RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780783|ref|YP_003065196.1| transcription regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
(149 letters)
>gnl|CDD|106740 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-amino acid
hydrolase fusion protein; Provisional.
Length = 591
Score = 29.2 bits (65), Expect = 0.44
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 39 ITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKSIENGCLYCLEDGMQFKS-LKRHLKT 97
I + AL V+ A + R P + K+ E G L G Q K+ L
Sbjct: 43 IAAIKQALAGVLDAADRAAKLDLIRAHPELA-GKAAEAGELTAESTGEQAKAGLNL---- 97
Query: 98 HHNMTPDEYRIKWNLASDY 116
TP+E+ L +DY
Sbjct: 98 ---CTPEEFAAIQKLNADY 113
>gnl|CDD|139033 PRK12518, PRK12518, RNA polymerase sigma factor; Provisional.
Length = 175
Score = 27.4 bits (61), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 82 LEDGMQ------FKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAK 132
L+D +Q +K L + L+ + YRI WN+A+D R++A S++
Sbjct: 37 LDDLVQEVFLRVWKGLPK-LRNPAYFSTWLYRITWNVATDA---RRQFAQRPSRIQD 89
>gnl|CDD|179962 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 27.0 bits (61), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 3 DDASFDSSERFLEMTVDIVAAYVSNHV 29
+D SF++ + E TV I AAYV +
Sbjct: 404 EDISFEAPDMSGE-TVTIDAAYVDEKL 429
>gnl|CDD|152448 pfam12013, DUF3505, Protein of unknown function (DUF3505). This
family of proteins is functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 247 to 1018 amino acids in length.
This region contains two segments that are likely to be
C2H2 zinc binding domains.
Length = 174
Score = 26.7 bits (59), Expect = 2.8
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 27 NHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKSIENGCLYCLEDGM 86
+H +P A L + + Q P L P +P + +G G
Sbjct: 34 HHHLPRATTQQLRQAIRQWDDLIRDPEAVQ---LPSALSPPIPGL-PVYDGYRCRAPPGC 89
Query: 87 QF-----KSLKRHLKTHHNMTPDE 105
+ K++++H + HH T
Sbjct: 90 PYITRSLKTMRKHWREHHGWTRAA 113
>gnl|CDD|132039 TIGR02994, ectoine_eutE, ectoine utilization protein EutE. Members
of this family, part of the succinylglutamate
desuccinylase / aspartoacylase family (pfam04952),
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it the operon is
known to be induced by ectoine), Mesorhizobium loti,
Silicibacter pomeroyi, Agrobacterium tumefaciens, and
Pseudomonas putida.
Length = 325
Score = 25.9 bits (57), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 21 VAAYVSNHVVPMADIGSLITDVHS 44
+A Y H++P+ADI + D HS
Sbjct: 124 IADYFQRHLLPLADI---VLDFHS 144
>gnl|CDD|80125 pfam05865, Cypo_polyhedrin, Cypovirus polyhedrin protein. This
family consists of several Cypovirus polyhedrin protein.
Polyhedrin is known to form a crystalline matrix
(polyhedra) in infected insect cells.
Length = 247
Score = 25.5 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 88 FKSLKRHLKTHHNMTPDEYRIKWNLASDYP 117
FK+LK + + HN + DEY + N + YP
Sbjct: 64 FKALKEYREGQHNDSYDEYEV--NQSIYYP 91
>gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
Provisional.
Length = 413
Score = 25.5 bits (56), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 18 VDIVAAYVSNHVVPMADIGSLITDV 42
VD VAA V+N VV +D+ L+ V
Sbjct: 7 VDKVAAVVNNGVVLESDVDGLMQSV 31
>gnl|CDD|162544 TIGR01817, nifA, Nif-specific regulatory protein. This model
represents NifA, a DNA-binding regulatory protein for
nitrogen fixation. The model produces scores between the
trusted and noise cutoffs for a well-described NifA
homolog in Aquifex aeolicus (which lacks nitrogenase),
for transcriptional activators of alternative
nitrogenases (VFe or FeFe instead of MoFe), and
truncated forms.
Length = 534
Score = 25.4 bits (56), Expect = 5.9
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 2 DDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPC 55
+ RFLEM +++ V H + LI + +++ +AP
Sbjct: 133 RSRERLEEEVRFLEMVANLIGQTVRLHRLVAQRRERLIAEAVQLSKQLRDKAPE 186
>gnl|CDD|183826 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 25.0 bits (56), Expect = 7.2
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 1 MDDDASFDSSERFLEMTVDIVAAYVSNHVVP-----MADIGSLITDVHS 44
++ + D SE L+M D++ V ++ P D+ L + +
Sbjct: 649 LEGE---DLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKT 694
>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional.
Length = 989
Score = 24.7 bits (53), Expect = 9.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 31 PMADIGSLITDVHSALQRVVSRA----PCQDNVQPERLKP 66
P D+ +L D+ V+RA P DNVQP R P
Sbjct: 600 PEPDVVALRQDIPLETLHYVARAAMQAPSGDNVQPWRFVP 639
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.132 0.386
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,351,436
Number of extensions: 133875
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 17
Length of query: 149
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,157,793
Effective search space: 266098752
Effective search space used: 266098752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)