RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780783|ref|YP_003065196.1| transcription regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
(149 letters)
>d2gmya1 a.152.1.3 (A:2-148) Hypothetical protein Atu0492
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 147
Score = 27.8 bits (61), Expect = 0.40
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 61 PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
R + +R SI NGC +C+ M K + + + + + ++
Sbjct: 30 EHRFIHLIKLRASIINGCAFCV--DMHVKESRHDGLSEQWINLMSVWRESPVYTEQERAL 87
Query: 121 REYATTRSKLAKNM 134
+ +K+A+
Sbjct: 88 LGWVDAVTKIAETG 101
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.66
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 81 CLEDGMQFK---SLKRHLKTHHN 100
C F+ L H K +H+
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHD 33
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 26.7 bits (59), Expect = 0.78
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 78 CLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNL 112
CL+C + H K H D K L
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGL 52
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence
genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 26.9 bits (59), Expect = 0.87
Identities = 8/70 (11%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 76 NGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMG 135
N C L LK +K +++ +E+ + ++ + +E + ++
Sbjct: 6 NDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISEN-----KEKEYYLKDIINHLN 60
Query: 136 LGRGRKKRVL 145
+ + + +
Sbjct: 61 YKQPQVVKAV 70
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3
{Arthrobacter globiformis [TaxId: 1665]}
Length = 315
Score = 25.3 bits (54), Expect = 2.5
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 86 MQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSK 129
F++ LK R W+ P+ + E TR+
Sbjct: 29 YWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTA 72
>d2o4da1 a.152.1.3 (A:2-145) Hypothetical protein PA0269
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 25.1 bits (54), Expect = 2.7
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 61 PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
L V +R S NGC YC+ M ++ +T + + + +
Sbjct: 30 ERPLIELVYLRTSQINGCAYCV--NMHANDARKAGETEQRLQALCVWQETPYFTPRERAA 87
Query: 121 REYATTRSKLAKNM 134
+ ++L++
Sbjct: 88 LAWTEQLARLSQGA 101
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 24.3 bits (52), Expect = 4.4
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 89 KSLKRHLKTHHNMTPDEYRIKW-NLASDYPM 118
K +++ + N+ +E +K+ + S
Sbjct: 92 KLIQQTFRQFANLNREESILKFFEILSPVYR 122
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 346
Score = 24.3 bits (52), Expect = 4.7
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 11/127 (8%)
Query: 25 VSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQP--ERLKPAVPIRKSIENGCLYCL 82
GS AL C + + R G CL
Sbjct: 141 FDQFFGEGCAPGSQRNSSLCAL--------CIGSERAPGRECLANNHERYYGYTGAFRCL 192
Query: 83 EDGMQFKSLKRH-LKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMGLGRGRK 141
+ +K ++ + + + K D+ ++ + A A+N L R
Sbjct: 193 VEKGDVAFVKDQVVQQNTDGKNKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPN 252
Query: 142 KRVLTSK 148
V+
Sbjct: 253 HAVVARD 259
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 24.1 bits (51), Expect = 4.8
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 57 DNVQPERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDY 116
D+ +K A I + G L G + + +LK H P +Y I +N A
Sbjct: 19 DHTISPAVKNA--IAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQ 76
Query: 117 PMVSREY 123
Sbjct: 77 KAADGST 83
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 24.4 bits (53), Expect = 4.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 81 CLEDGMQFK---SLKRHLKTH 98
C E G F L +H +TH
Sbjct: 15 CDECGKSFSHSSDLSKHRRTH 35
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 24.3 bits (52), Expect = 5.2
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 70 IRKSIENGCLYCLEDGMQFK---SLKRHLKTH 98
+ + C G +FK L H+K H
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId:
1422]}
Length = 119
Score = 23.9 bits (52), Expect = 6.2
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 116 YPMVSREYATTRSKLAKNM 134
YP ++++Y TT S++ + +
Sbjct: 51 YPDIAKKYNTTASRVERAI 69
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.5 bits (51), Expect = 7.3
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 81 CLEDGMQFK---SLKRHLKTHHNM 101
C + F L H K H +
Sbjct: 14 CPDCDRSFSRSDHLALHRKRHMLV 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.386
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,015
Number of extensions: 22697
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 20
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)