HHsearch alignment for GI: 254780784 and conserved domain: COG0539

Probab=99.62  E-value=1.5e-15  Score=145.08  Aligned_cols=109  Identities=36%  Similarity=0.611  Sum_probs=90.9

Q ss_pred             EEEEC-CEEEEEEECCHHHHH-HHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHH
Q ss_conf             99808-808999968989999-9999999852475468678999999941536998287971048866314445478556
Q gi|254780784|r  585 VNIDD-DGTVKIASSSLAEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD  662 (699)
Q Consensus       585 i~i~d-~g~v~i~~~~~~~~~-~a~~~i~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d  662 (699)
T Consensus       158 ie~d~~~n~vv~S--rR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdi-gGvdGLlHiseiS~~rv~~P~~  234 (541)
T COG0539         158 LELDKKRNNVVLS--RRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDI-GGVDGLLHISEISWKRVDHPSE  234 (541)
T ss_pred             EEECCCCCCEEEE--HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEE-CCEEEEEEHHHCCCCCCCCHHH
T ss_conf             9985334847877--177766778887999972478876699999986157479992-5716688647606555589899


Q ss_pred             HCCCCCEEEEEEEEECC-CCCEEEEEEECCCCCCC
Q ss_conf             03259889999997868-99866687304778789
Q gi|254780784|r  663 VVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK  696 (699)
Q Consensus       663 ~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~~~~~~  696 (699)
T Consensus       235 vvkvGd~VkvkVi~~D~e~~RVsLSlK~l~~dPw~  269 (541)
T COG0539         235 VVKVGDEVKVKVISLDEERGRVSLSLKQLEEDPWE  269 (541)
T ss_pred             HCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCCHH
T ss_conf             53569889999999726788699994650469477