HHsearch alignment for GI: 254780784 and conserved domain: COG0689

>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=3.9e-31  Score=271.89  Aligned_cols=221  Identities=29%  Similarity=0.417  Sum_probs=194.8

Q ss_pred             HHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEE-ECCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             87288665886775337879984475466700899987976899998-16865212233445442035877405887544
Q gi|254780784|r  307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT-LGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT  385 (699)
Q Consensus       307 ILeeg~R~DGR~~dEIRpIs~EvgvLPrvHGSALFtRGETQaL~tvT-LG~~~d~Q~iD~l~~~~~k~fmlHYNFPpfsv  385 (699)
T Consensus         3 ~~~~~~R~dgR~~~elR~i~~~~~~~~~a~GS~~~~~G~tkVic~vsGp~e~~p~~l~~~~~g~~t~----ey~m~p~sT   78 (230)
T COG0689           3 ESEDGMRPDGRKPDELRPIKITRGVLKHAEGSSLIEFGNTKVICTVSGPREPVPRFLRGTGKGWLTA----EYGMLPRST   78 (230)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCHHHCCCCCEEEEE----EECCCCCCC
T ss_conf             7666737788884524646887155467885379996780899997067778885443777217999----970201234


Q ss_pred             CCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             53345567650-24679999999874107864468738999853110278522356677779876259502254121332
Q gi|254780784|r  386 GEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM  464 (699)
Q Consensus       386 GE~~~~~~~~R-REiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp~~~~VaGiam  464 (699)
T Consensus        79 ~~-R~~~~~~~gR~~eisrli~~al~~~i~L~~~p~~~I~i~~dVlqaDggTrta~It~A~lAL~DAgipl~~~vaaiSv  157 (230)
T COG0689          79 DE-RKKREADRGRTKEISRLIGRALRAVIDLELLPESTIDIDCDVLQADGGTRTASITGASLALADAGIPLRDLVAAISV  157 (230)
T ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEHHHHHHHHHHHCCCCHHHHEEEEEE
T ss_conf             33-32344334303279999999998876565447638999999998789754202667999998739945653027678


Q ss_pred             EEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCC----CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             00440882899863144220136551001005565----1244324536556889999999999999999999998435
Q gi|254780784|r  465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL  539 (699)
Q Consensus       465 GLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~G----iTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~  539 (699)
T Consensus       158 gi~~~~----~~lDl~~~Eds~~~~d~~v~~~~~~~~~ei~~~~~~---~~~~~del~~lL~la~~g~~~~~~~~~~al  229 (230)
T COG0689         158 GIVDGV----IVLDLDYEEDSAAEADMNVVMTGNGGLVEIQGLAED---GPFTEDELLELLDLAIKGCNELRELQREAL  229 (230)
T ss_pred             EEECCC----EEECCCCHHHCCCCCCCEEEEEECCCEEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             887793----576374321112244714999706973789986306---997999999999999999999999999975