HHsearch alignment for GI: 254780784 and conserved domain: COG1094

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only].

Probab=97.40  E-value=0.00082  Score=49.71  Aligned_cols=85  Identities=32%  Similarity=0.501  Sum_probs=66.3

Q ss_pred             CCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEE-CCEEEEEEEC----CHHHHHHHHHHHHHHCC--CCC---
Q ss_conf             4875799997711500003786077998999868889980-8808999968----98999999999998524--754---
Q gi|254780784|r  549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASS----SLAEIEAAREMIRSITD--VPE---  618 (699)
Q Consensus       549 ~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~-d~g~v~i~~~----~~~~~~~a~~~i~~~~~--~~e---  618 (699)
T Consensus         5 ~~~~~~~v~iPk~R~~~lig~~g~v~k~ie~~~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~   84 (194)
T COG1094           5 AEKSSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKAL   84 (194)
T ss_pred             CCCCEEEEECCCHHHEEEECCCCCCHHHHHHHCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             20010455457045101225663105898861575899977877699983687788588998999999986689989999


Q ss_pred             --CCCEEEEEEEEEEEC
Q ss_conf             --686789999999415
Q gi|254780784|r  619 --VNKIYKGQVVKVMDF  633 (699)
Q Consensus       619 --~g~~y~~~v~~i~~f  633 (699)
T Consensus        85 ~LL~d~~~levIdi~~~  101 (194)
T COG1094          85 KLLEDDYYLEVIDLKDV  101 (194)
T ss_pred             HHHCCCCEEEEEEHHHH
T ss_conf             98627857999997884