HHsearch alignment for GI: 254780784 and conserved domain: COG1096
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis].
Probab=96.74 E-value=0.009 Score=41.21 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=63.7
Q ss_pred HCCCCCCCCEEEEEEEEEEECCEEEECCC--C--------CCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf 52475468678999999941536998287--9--------7104886631444547855603259889999997868998
Q gi|254780784|r 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCG--A--------RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 (699)
Q Consensus 613 ~~~~~e~g~~y~~~v~~i~~fGafve~~~--g--------~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~ 682 (699)
T Consensus 58 ~~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~--~~ 135 (188)
T COG1096 58 TPPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG--DP 135 (188)
T ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--CC
T ss_conf 7776898879999995326608999999994333367887402589782023111020134464617999998617--87
Q ss_pred EEEEEE
Q ss_conf 666873
Q gi|254780784|r 683 IKLSMK 688 (699)
Q Consensus 683 i~lSrk 688 (699)
T Consensus 136 ~~Lst~ 141 (188)
T COG1096 136 IQLSTK 141 (188)
T ss_pred EEEEEC
T ss_conf 189852