HHsearch alignment for GI: 254780784 and conserved domain: COG1097

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis].

Probab=97.08  E-value=0.0036  Score=44.50  Aligned_cols=74  Identities=24%  Similarity=0.447  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCC----CHHHHCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf             7546867899999994153699828797104886631444547----8556032598899999978689986668730
Q gi|254780784|r  616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA----KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV  689 (699)
Q Consensus       616 ~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~----~~~d~~~~Gd~i~vk~~~~d~~g~i~lSrk~  689 (699)
T Consensus        61 iP~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~~~~~L~~k~  138 (239)
T COG1097          61 IPEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDRDGEVELTLKD  138 (239)
T ss_pred             CCCCCCEEEEEEEEECCCCEEEECCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEC
T ss_conf             488899999999997156338972895323742666200225542234522267687899999972677753799606