HHsearch alignment for GI: 254780784 and conserved domain: COG1097
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis].
Probab=95.84 E-value=0.03 Score=36.97 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=52.8
Q ss_pred EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 999977115000037860779989998688899808808999968989999999999985247
Q gi|254780784|r 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616 (699)
Q Consensus 554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~ 616 (699)
T Consensus 148 ~iv~i~p~kVpRvig~~~sm~~~l~~~~~~~I~VG~NG~IWV~~~~~~~e~~~~~aI~~ie~e 210 (239)
T COG1097 148 QIVKIPPSKVPRVIGKKGSMLNMLKEKTGCEIIVGQNGRIWVDGENESLEELAIEAIRKIERE 210 (239)
T ss_pred EEEEECHHHCCEEECCCCCHHHHHHHCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 899976022524766886478876540576899966988996278863279999999987554