HHsearch alignment for GI: 254780784 and conserved domain: COG1097

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis].
Probab=95.84  E-value=0.03  Score=36.97  Aligned_cols=63  Identities=29%  Similarity=0.490  Sum_probs=52.8

Q ss_pred             EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf             999977115000037860779989998688899808808999968989999999999985247
Q gi|254780784|r  554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV  616 (699)
Q Consensus       554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~  616 (699)
T Consensus       148 ~iv~i~p~kVpRvig~~~sm~~~l~~~~~~~I~VG~NG~IWV~~~~~~~e~~~~~aI~~ie~e  210 (239)
T COG1097         148 QIVKIPPSKVPRVIGKKGSMLNMLKEKTGCEIIVGQNGRIWVDGENESLEELAIEAIRKIERE  210 (239)
T ss_pred             EEEEECHHHCCEEECCCCCHHHHHHHCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             899976022524766886478876540576899966988996278863279999999987554