HHsearch alignment for GI: 254780784 and conserved domain: COG1185
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1959.61 Aligned_cols=690 Identities=55% Similarity=0.893 Sum_probs=677.7
Q ss_pred CCCEEEEEEEECCEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 97208999998998999991400454672899997894899999727888877773540686652320133678887357
Q gi|254780784|r 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80 (699)
Q Consensus 1 m~~~~~~~~~~ggr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kR 80 (699)
T Consensus 1 ~~~~~~~~~~~~~~~l~~etg~~A~qa~gav~~~~gdt~vl~t~~~~~-~~~~~dF~PLtV~y~Ek~yaaGkiPGgf~kR 79 (692)
T COG1185 1 MFNKIVKTIEWGGRTLTLETGKIARQANGAVLVRYGDTVVLATVVASK-PKEGQDFFPLTVNYEEKTYAAGKIPGGFFKR 79 (692)
T ss_pred CCCCEEEEEEECCEEEEEECCHHHHHCCCCEEEEECCEEEEEEEEECC-CCCCCCCCCEEEEEEEEHHCCCCCCCCCCCC
T ss_conf 976268988888846999824335525750899978979999975147-8889884431673545012067677742036
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf 89887145311112321267767468868837899998218888778999999999987326882354112355204773
Q gi|254780784|r 81 ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160 (699)
Q Consensus 81 Egrpsd~EiL~sRlIDR~lRPLFPkgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~idge 160 (699)
T Consensus 80 EGrpse~e~L~sRLIDRpiRPlFp~g~~~evqIv~tvls~D~~~~pdi~a~~gaSaAl~ls~iPf~gpi~~vrvg~idg~ 159 (692)
T COG1185 80 EGRPSEKEILTSRLIDRPIRPLFPKGFRNEVQIVNTVLSVDPENDPDILAMVGASAALSLSGIPFLGPIGAVRVGYIDGI 159 (692)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCE
T ss_conf 77887520267764066553355212065408999998667877868899878889875137986676014899998898
Q ss_pred EEECCCCCC-CCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHH
Q ss_conf 243685000-222101355305443233312444324899998875316889999999999999838898644743-125
Q gi|254780784|r 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238 (699)
Q Consensus 161 ~ViNPt~ee-~esdLDLvVAGT~d~IlMIE~~A~EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~-~~~ 238 (699)
T Consensus 160 ~vlNPt~~e~~~s~lDlvVAGT~~aV~MVE~~a~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~~~g~~~~~~~~~~~~~ 239 (692)
T COG1185 160 FVLNPTLEELEESKLDLVVAGTKDAVNMVESEADELDEEVMLEAVEFGHEAIQSVINAQEELALEVGKKKWELEPPSLDE 239 (692)
T ss_pred EEECCCHHHHHHCCEEEEECCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 99778766654163125760786664104346666888999999998889899999999999997376553233568648
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 79999999989888887410001224899999999997302231000002678899999999999999872886658867
Q gi|254780784|r 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318 (699)
Q Consensus 239 ~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~~~~~~~i~~af~~l~k~ivR~~ILeeg~R~DGR~ 318 (699)
T Consensus 240 ~l~~~i~~~~~~~l~~a~~i~~K~eR~~~~~~~~~~i~~~~~~~e~~-~~~~~~~~~~~l~~~~vR~~Il~~~vR~DGR~ 318 (692)
T COG1185 240 ELEAKVRDLAEDELKEAVGIREKQERSAALDAIKEKIEEELSGEEES-SLKEIKAILEKLEKKPVRRLILEGKVRIDGRF 318 (692)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999867889998644513334667888999999997542134-27889999998767999999863884357887
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 75337879984475466700899987976899998168652122334454420358774058875445334556765024
Q gi|254780784|r 319 SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 (699)
Q Consensus 319 ~dEIRpIs~EvgvLPrvHGSALFtRGETQaL~tvTLG~~~d~Q~iD~l~~~~~k~fmlHYNFPpfsvGE~~~~~~~~RRE 398 (699)
T Consensus 319 ~~~VRpi~~ev~~lpr~HGS~LFtRGeTQal~v~TLG~~~d~Qiid~l~~e~~krfm~hYNFPp~SvGE~g~~g~p~RRE 398 (692)
T COG1185 319 GDEVRPIGIEVGVLPRTHGSALFTRGETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFSVGETGRMGSPGRRE 398 (692)
T ss_pred CCEEEEEEEEECCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 65265403775478875302210068875146897577413666552053233325421267998745567788987533
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEE
Q ss_conf 67999999987410786446873899985311027852235667777987625950225412133200440882899863
Q gi|254780784|r 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 (699)
Q Consensus 399 iGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp~~~~VaGiamGLi~~~~~~~iLtD 478 (699)
T Consensus 399 iGHG~LA~Ral~~vlp~~e~fpytiRvVsEi~eSNGSsSmaSVCg~sLaLmdAGVPIk~pVAGIAMGLI~eg~~~~vLsD 478 (692)
T COG1185 399 IGHGALAERALAPVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKYAVLSD 478 (692)
T ss_pred CCCCHHHHHHHHHHCCCHHCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEEECC
T ss_conf 46736468888650995100780455220111046741222345517988757896355554300152324874476400
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 14422013655100100556512443245365568899999999999999999999984356674332244875799997
Q gi|254780784|r 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558 (699)
Q Consensus 479 I~G~ED~~GdMDFKvaGT~~GiTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i 558 (699)
T Consensus 479 I~G~EDhlGDMDFKVAGT~~GiTAlQMDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~pr~els~~aPri~t~~i 558 (692)
T COG1185 479 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNEAISEPRKELSPYAPRIETIKI 558 (692)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 26653345773268725767750104556645888999999998799999999999999875114344245872499613
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEE
Q ss_conf 71150000378607799899986888998088089999689899999999999852475468678999999941536998
Q gi|254780784|r 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638 (699)
Q Consensus 559 ~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~e~g~~y~~~v~~i~~fGafve 638 (699)
T Consensus 559 ~~dKI~dvIG~gGk~I~~I~eetg~~IdieddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~ 638 (692)
T COG1185 559 DPDKIRDVIGPGGKTIKAITEETGVKIDIEDDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVE 638 (692)
T ss_pred CHHHHHHCCCCCCCCHHHHHHHHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEE
T ss_conf 88887632188632034655734767984589858999565688899999999987431015289988999864125898
Q ss_pred CCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 287971048866314445478556032598899999978689986668730477
Q gi|254780784|r 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 (699)
Q Consensus 639 ~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lSrk~~~~ 692 (699)
T Consensus 639 l~~gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD~~Gri~ls~~~~~~ 692 (692)
T COG1185 639 LLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEIDKQGRIRLSIKAVLE 692 (692)
T ss_pred ECCCCCEEEEEHHHHHHHHHCCCCEEECCCEEEEEEEEECCCCCCCCEEHHCCC
T ss_conf 338962068743533455532045354486599999633666770321121049