HHsearch alignment for GI: 254780784 and conserved domain: COG1847
>COG1847 Jag Predicted RNA-binding protein [General function prediction only].
Probab=90.18 E-value=1.1 Score=24.24 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEE
Q ss_conf 536556889-9999999999999999999984356674332244875799997711500003786077998999868889
Q gi|254780784|r 507 MKIGGISEN-IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 (699)
Q Consensus 507 iK~~gi~~~-il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i 585 (699)
T Consensus 49 v~v~~~~~~~~~~~~~~~~~~~L~ell~~m~~~~~i---~v~~-~~~~v~~~i~~~~~~~LIG~~Gk~LdALQ~L~n~~l 124 (208)
T COG1847 49 VKVEPKADETVIEKIAQEAKDYLEELLELMDFEVTI---TVSE-EGRRVVVSIEGEDAGRLIGKHGKTLDALQYLANLYL 124 (208)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE---EEEE-CCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 035531465303579999999999999983986599---9962-475799994488610230367740179999999985
Q ss_pred EEECCEEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 98088089999689899999999999852
Q gi|254780784|r 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT 614 (699)
Q Consensus 586 ~i~d~g~v~i~~~~~~~~~~a~~~i~~~~ 614 (699)
T Consensus 125 ~~~~g~~~~v~ldv~~yRerR~e~L~~LA 153 (208)
T COG1847 125 NKIGGKFKRVTLDVGDYRERRKETLIKLA 153 (208)
T ss_pred HHHCCCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 35059615899982068999999999999