HHsearch alignment for GI: 254780784 and conserved domain: COG2996
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].
Probab=92.37 E-value=0.46 Score=27.34 Aligned_cols=88 Identities=30% Similarity=0.394 Sum_probs=39.7
Q ss_pred EEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE-ECCEEEEC-CCCCCEEEEEEECCCCCCCCHH
Q ss_conf 899808808999968989999999999985247546867899999994-15369982-8797104886631444547855
Q gi|254780784|r 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHF-CGARDGLVHISQLSTERVAKTS 661 (699)
Q Consensus 584 ~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~e~g~~y~~~v~~i~-~fGafve~-~~g~~gl~HiS~l~~~~v~~~~ 661 (699)
T Consensus 43 e~evGdev~vFiY~D~~~rl~aTt~-----~p~~tvg~~g~~~Vv~v~~~lGaFlD~Gl~-KDl~vp~~elp~-----~~ 111 (287)
T COG2996 43 ELEVGDEVTVFIYVDSEDRLIATTR-----EPKATVGEYGWLKVVEVNKDLGAFLDWGLP-KDLLVPLDELPT-----LK 111 (287)
T ss_pred CCCCCCEEEEEEEECCCCCEEHEEE-----CCEEEECCEEEEEEEEECCCCCEEEECCCC-CCEEEEHHHCCC-----CC
T ss_conf 5113768999999888776301010-----413740532379999873775158965987-003616253644-----31
Q ss_pred HH-CCCCCEEEEEEEEECCCCCE
Q ss_conf 60-32598899999978689986
Q gi|254780784|r 662 DV-VKEGDTVWVKLLDFDDRGKI 683 (699)
Q Consensus 662 d~-~~~Gd~i~vk~~~~d~~g~i 683 (699)
T Consensus 112 ~~wpq~Gd~l~v~l-~~Dkk~Ri 133 (287)
T COG2996 112 SLWPQKGDKLLVYL-YVDKKGRI 133 (287)
T ss_pred CCCCCCCCEEEEEE-EECCCCCE
T ss_conf 23778798999999-98567847