HHsearch alignment for GI: 254780784 and conserved domain: PRK00173

>PRK00173 rph ribonuclease PH; Reviewed.
Probab=99.97  E-value=4.9e-30  Score=263.00  Aligned_cols=203  Identities=23%  Similarity=0.260  Sum_probs=171.6

Q ss_pred             CEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCC-C--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCC---CCCCH
Q ss_conf             9899999140045467289999789489999972788-8--8777735406866523201336788873578---98871
Q gi|254780784|r   13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-L--KDGQDFFPLTVNYQERTYAVGKIPGGYLRRE---SRPTE   86 (699)
Q Consensus        13 gr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~-~--~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kRE---grpsd   86 (699)
T Consensus        11 ~R~i~i~~g-~~~~A~GSa~v~~G~T~Vl~~v~~~~~~p~~~~~~~~g~l~~ey~mlP~st~~----R~~R~~~~g~~~~   85 (237)
T PRK00173         11 LRPVTITRN-YTKHAEGSVLVEFGDTKVLCTASVEEGVPRFLKGQGQGWVTAEYGMLPRATHT----RNDREAAKGKQGG   85 (237)
T ss_pred             CCCEEEEEC-CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC----CCCCCCCCCCCCC
T ss_conf             446599948-77998736999968929999997266675300377653367775216767788----6757655688760


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEE--EEEEEECCCCCCHHHHHHHHHHHHHHHC-----------CCCCCCCEEEEE
Q ss_conf             453111123212677674688688378--9999821888877899999999998732-----------688235411235
Q gi|254780784|r   87 NEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQ  153 (699)
Q Consensus        87 ~EiL~sRlIDR~lRPLFPkgf~~evQI--v~~VLS~D~~~dpdvlAi~aASaAL~IS-----------dIPf~GPVaaVR  153 (699)
T Consensus        86 r~~Eisrli~ralr~~i~l~~~~~~~I~i~~~VL~aDGg~~--~Asi~aa~lAL~dA~~~~~~~~~~~~~P~~~~v~avs  163 (237)
T PRK00173         86 RTQEIQRLIGRSLRAVVDLKALGERTITLDCDVLQADGGTR--TASITGAYVALADALNKLVARGKLKKNPLKDHVAAVS  163 (237)
T ss_pred             CHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEECCCCCC--CEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf             06899999999987761185549859999999861589821--2012357899999999998648666788546411168


Q ss_pred             EEECCCCEEECCCCCCC-CCCCEEEEEECCCC-HHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             52047732436850002-22101355305443-233312444--32489999887531688999999999999
Q gi|254780784|r  154 VDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLA  222 (699)
Q Consensus       154 VG~idge~ViNPt~ee~-esdLDLvVAGT~d~-IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~  222 (699)
T Consensus       164 ~G~i~~~~v~D~~~~Ed~~~d~d~~v~~~~~g~iv~iQ~~ge~~~fs~ee~~~~l~~A~~gi~~I~~~q~~aL  236 (237)
T PRK00173        164 VGIVDGEPVLDLDYVEDSAAETDMNVVMTGDGGFVEVQGTAEGAPFSREELNALLDLAEGGIAELVALQKAAL  236 (237)
T ss_pred             EEEECCEEEECCCHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998786877888467626876369998699989999714677985999999999999999999999999974