HHsearch alignment for GI: 254780784 and conserved domain: PRK03983
>PRK03983 exosome complex exonuclease Rrp41; Provisional.
Probab=100.00 E-value=1.6e-41 Score=356.37 Aligned_cols=236 Identities=30% Similarity=0.483 Sum_probs=208.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 99999872886658867753378799844754667008999879768999981686521223344544203587740588
Q gi|254780784|r 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 (699)
Q Consensus 302 ivR~~ILeeg~R~DGR~~dEIRpIs~EvgvLPrvHGSALFtRGETQaL~tvTLG~~~d~Q~iD~l~~~~~k~fmlHYNFP 381 (699)
T Consensus 3 ~~~~~l~~eg~R~DGR~~~elR~i~~~~g~~~~adGSa~~~~G~T~Vl~~V~-gp~e~~~~--~~~~~~~~~l~v~~~~~ 79 (243)
T PRK03983 3 EPPKLILEDGLRLDGRKPDELRPIKIEVGVLKNADGSAYVEWGNNKIIAAVY-GPREMHPR--HLQLPDRAVLRVRYNMA 79 (243)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEC-CCCCCCCC--CCCCCCCEEEEEEEECC
T ss_conf 7744566989659995988843869996979999889999978949999975-78445732--00378748999999658
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 75445334556765024679999999874107864468738999853110278522356677779876259502254121
Q gi|254780784|r 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 (699)
Q Consensus 382 pfsvGE~~~~~~~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp~~~~VaG 461 (699)
T Consensus 80 pfa~~~r~-~~~~~~~~~els~~i~~~l~~~i~~~~~p~s~I~V~v~Vl~~DG~~~~aainaa~lAL~dAgIpm~d~v~a 158 (243)
T PRK03983 80 PFSVDERK-RPGPDRREIEISKVIREALEPAIMLEQFPRSVIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAG 158 (243)
T ss_pred CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEECCCCCCCEECCCCCEEEHHHCCCCCCCCEEE
T ss_conf 87667665-78998318999999999987542898879709999999991799810001035367654569872463517
Q ss_pred EEEEEEEECCEEEEEEECCCCCCCCCCCCEEEE--ECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 332004408828998631442201365510010--055651244324536556889999999999999999999998435
Q gi|254780784|r 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 (699)
Q Consensus 462 iamGLi~~~~~~~iLtDI~G~ED~~GdMDFKva--GT~~GiTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~ 539 (699)
T Consensus 159 ~svg~~~----~~~ilDp~~~Ee~~~~~~l~va~~~~~~~i~~~q~~---G~~s~~~l~~~l~~a~~~~~~i~~~~~~~l 231 (243)
T PRK03983 159 CAVGKVD----GVIVLDLNKEEDNYGEADMPVAIMPKLGEITLLQLD---GNLTRDEFLEALELAKKGAKRIYQIQREAL 231 (243)
T ss_pred EEEEEEC----CEEEECCCHHHHCCCCCEEEEEEECCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999989----999988983774057740699996699989999998---858899999999999999999999999999
Q ss_pred CCCCCCCCC
Q ss_conf 667433224
Q gi|254780784|r 540 SESRLQLGE 548 (699)
Q Consensus 540 ~~~~~~~~~ 548 (699)
T Consensus 232 ~~~~~~~~~ 240 (243)
T PRK03983 232 KNKYLEIAE 240 (243)
T ss_pred HHHHHHHHH
T ss_conf 878876555