HHsearch alignment for GI: 254780784 and conserved domain: PRK04282

>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional.
Probab=99.68  E-value=1.2e-14  Score=137.77  Aligned_cols=198  Identities=26%  Similarity=0.356  Sum_probs=156.1

Q ss_pred             CEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECC-CC---CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             989999914004546728999978948999997278-88---87777354068665232013367888735789887145
Q gi|254780784|r   13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE   88 (699)
Q Consensus        13 gr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~-~~---~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kREgrpsd~E   88 (699)
T Consensus        34 ~R~i~i~~g~l~~-a~GSa~v~~G~T~Vla~V~~ei~~p~~~~p~eG~~--~~~v~~~~~a---~~~-~--~~g~~~~~~  104 (271)
T PRK04282         34 YRPIEIETGVIKK-AEGSALVKLGNTQVIAGVKLELGEPFPDTPDEGVL--IVNAELLPLA---SPT-F--EPGPPDENA  104 (271)
T ss_pred             CCCEEEEECCCCC-CCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCE--EEEEEECCCC---CCC-C--CCCCCCCCH
T ss_conf             6675999798588-88059999689489999872356765668985437--9999657867---776-6--579976302


Q ss_pred             HHHHHHHHCCCCCC----------CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------
Q ss_conf             31111232126776----------746886883789999821888877899999999998732688--------------
Q gi|254780784|r   89 ILISRMIDRSIRPL----------FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP--------------  144 (699)
Q Consensus        89 iL~sRlIDR~lRPL----------FPkgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIP--------------  144 (699)
T Consensus       105 ~e~~~~l~r~l~~s~~idle~LcI~~g~~~W~i~idv~VL~~dGn~~--dA~~~A~~aAL~~~~~P~v~~~~~~~~~~~~  182 (271)
T PRK04282        105 IELARVVDRGIRESGAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLL--DASMLAAVAALLNTKLPAVVKEDGGVVLDLG  182 (271)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCHH--HHHHHHHHHHHHHCCCCEEEECCCCEEECCC
T ss_conf             88999999887642523247636577775179999999991599688--8899999999986689716851663121136


Q ss_pred             ------CCCCEEEEEEEECCCCEEECCCCCCC-CCCCEEEEEECCCC-HHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------23541123552047732436850002-22101355305443-233312-4443248999988753168899999
Q gi|254780784|r  145 ------FEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-VLMVEL-EANQLSEDVVLDAIIFGHNECKPVI  215 (699)
Q Consensus       145 ------f~GPVaaVRVG~idge~ViNPt~ee~-esdLDLvVAGT~d~-IlMIE~-~A~EVsEe~mleAI~~Ahe~Ik~iI  215 (699)
T Consensus       183 ~~~~l~i~~~Pi~vT~~~i~~~~l~Dpt~~EE~~~~~~~~V~~n~~g~i~~l~k~g~~~i~~~~l~~~~~~A~~~~~~l~  262 (271)
T PRK04282        183 EKVPLPINNKPVSVTFAKIGNYLVVDPTLEEELVMDARITITTDEDGIICAMQKSGLGSFTEEEVEEAIDLALKKAKELR  262 (271)
T ss_pred             CCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             66677635661378999999999977998898456876999990899799997789999599999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780784|r  216 EAISKL  221 (699)
Q Consensus       216 ~~Q~eL  221 (699)
T Consensus       263 ~~i~~a  268 (271)
T PRK04282        263 EKLKEA  268 (271)
T ss_pred             HHHHHH
T ss_conf             999986