HHsearch alignment for GI: 254780784 and conserved domain: PRK04282
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional.
Probab=99.68 E-value=1.2e-14 Score=137.77 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=156.1
Q ss_pred CEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECC-CC---CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 989999914004546728999978948999997278-88---87777354068665232013367888735789887145
Q gi|254780784|r 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88 (699)
Q Consensus 13 gr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~-~~---~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kREgrpsd~E 88 (699)
T Consensus 34 ~R~i~i~~g~l~~-a~GSa~v~~G~T~Vla~V~~ei~~p~~~~p~eG~~--~~~v~~~~~a---~~~-~--~~g~~~~~~ 104 (271)
T PRK04282 34 YRPIEIETGVIKK-AEGSALVKLGNTQVIAGVKLELGEPFPDTPDEGVL--IVNAELLPLA---SPT-F--EPGPPDENA 104 (271)
T ss_pred CCCEEEEECCCCC-CCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCE--EEEEEECCCC---CCC-C--CCCCCCCCH
T ss_conf 6675999798588-88059999689489999872356765668985437--9999657867---776-6--579976302
Q ss_pred HHHHHHHHCCCCCC----------CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------
Q ss_conf 31111232126776----------746886883789999821888877899999999998732688--------------
Q gi|254780784|r 89 ILISRMIDRSIRPL----------FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP-------------- 144 (699)
Q Consensus 89 iL~sRlIDR~lRPL----------FPkgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIP-------------- 144 (699)
T Consensus 105 ~e~~~~l~r~l~~s~~idle~LcI~~g~~~W~i~idv~VL~~dGn~~--dA~~~A~~aAL~~~~~P~v~~~~~~~~~~~~ 182 (271)
T PRK04282 105 IELARVVDRGIRESGAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLL--DASMLAAVAALLNTKLPAVVKEDGGVVLDLG 182 (271)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCHH--HHHHHHHHHHHHHCCCCEEEECCCCEEECCC
T ss_conf 88999999887642523247636577775179999999991599688--8899999999986689716851663121136
Q ss_pred ------CCCCEEEEEEEECCCCEEECCCCCCC-CCCCEEEEEECCCC-HHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ------23541123552047732436850002-22101355305443-233312-4443248999988753168899999
Q gi|254780784|r 145 ------FEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-VLMVEL-EANQLSEDVVLDAIIFGHNECKPVI 215 (699)
Q Consensus 145 ------f~GPVaaVRVG~idge~ViNPt~ee~-esdLDLvVAGT~d~-IlMIE~-~A~EVsEe~mleAI~~Ahe~Ik~iI 215 (699)
T Consensus 183 ~~~~l~i~~~Pi~vT~~~i~~~~l~Dpt~~EE~~~~~~~~V~~n~~g~i~~l~k~g~~~i~~~~l~~~~~~A~~~~~~l~ 262 (271)
T PRK04282 183 EKVPLPINNKPVSVTFAKIGNYLVVDPTLEEELVMDARITITTDEDGIICAMQKSGLGSFTEEEVEEAIDLALKKAKELR 262 (271)
T ss_pred CCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 66677635661378999999999977998898456876999990899799997789999599999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780784|r 216 EAISKL 221 (699)
Q Consensus 216 ~~Q~eL 221 (699)
T Consensus 263 ~~i~~a 268 (271)
T PRK04282 263 EKLKEA 268 (271)
T ss_pred HHHHHH
T ss_conf 999986