HHsearch alignment for GI: 254780784 and conserved domain: PRK06299

>PRK06299 rpsA 30S ribosomal protein S1; Reviewed.
Probab=99.66  E-value=1.9e-15  Score=144.32  Aligned_cols=79  Identities=34%  Similarity=0.545  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCC-CCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECCCC
Q ss_conf             754686789999999415369982879710488663144-4547855603259889999997868-99866687304778
Q gi|254780784|r  616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN  693 (699)
Q Consensus       616 ~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~-~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~~~  693 (699)
T Consensus       273 ~~~~G~~v~g~V~~i~~fGafVel~~gveGlvhiSelsw~~~~~~p~~~~~~G~~V~~kIl~id~~~~risLS~K~~~~n  352 (556)
T PRK06299        273 KYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKEN  352 (556)
T ss_pred             HCCCCCEEEEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf             47899989999999827607999549958998878716754447978954479779999999724436888863236679


Q ss_pred             C
Q ss_conf             7
Q gi|254780784|r  694 T  694 (699)
Q Consensus       694 ~  694 (699)
T Consensus       353 P  353 (556)
T PRK06299        353 P  353 (556)
T ss_pred             H
T ss_conf             7