HHsearch alignment for GI: 254780784 and conserved domain: PRK07899
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed.
Probab=99.75 E-value=1.7e-17 Score=160.99 Aligned_cols=85 Identities=36% Similarity=0.581 Sum_probs=77.1
Q ss_pred HHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEE
Q ss_conf 985247546867899999994153699828797104886631444547855603259889999997868-9986668730
Q gi|254780784|r 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689 (699)
Q Consensus 611 ~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~ 689 (699)
T Consensus 285 ~~~~~k~~vG~vv~GkV~~l~~fGAFVel~~GIEGLVHISElS~~~v~~P~dvv~~GdeV~vkIl~ID~e~rRISLSiKQ 364 (484)
T PRK07899 285 QVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVSVGDEVMVKVIDIDLERRRISLSLKQ 364 (484)
T ss_pred HHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEECCEEC
T ss_conf 98986489989899999987266059993699676678776456444798884779988999999875776785423001
Q ss_pred CCCCCC
Q ss_conf 477878
Q gi|254780784|r 690 VDQNTG 695 (699)
Q Consensus 690 ~~~~~~ 695 (699)
T Consensus 365 a~e~~~ 370 (484)
T PRK07899 365 ANEDYD 370 (484)
T ss_pred CCCCCC
T ss_conf 678988