HHsearch alignment for GI: 254780784 and conserved domain: PRK07899

>PRK07899 rpsA 30S ribosomal protein S1; Reviewed.
Probab=99.75  E-value=1.7e-17  Score=160.99  Aligned_cols=85  Identities=36%  Similarity=0.581  Sum_probs=77.1

Q ss_pred             HHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEE
Q ss_conf             985247546867899999994153699828797104886631444547855603259889999997868-9986668730
Q gi|254780784|r  611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV  689 (699)
Q Consensus       611 ~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~  689 (699)
T Consensus       285 ~~~~~k~~vG~vv~GkV~~l~~fGAFVel~~GIEGLVHISElS~~~v~~P~dvv~~GdeV~vkIl~ID~e~rRISLSiKQ  364 (484)
T PRK07899        285 QVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVSVGDEVMVKVIDIDLERRRISLSLKQ  364 (484)
T ss_pred             HHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEECCEEC
T ss_conf             98986489989899999987266059993699676678776456444798884779988999999875776785423001


Q ss_pred             CCCCCC
Q ss_conf             477878
Q gi|254780784|r  690 VDQNTG  695 (699)
Q Consensus       690 ~~~~~~  695 (699)
T Consensus       365 a~e~~~  370 (484)
T PRK07899        365 ANEDYD  370 (484)
T ss_pred             CCCCCC
T ss_conf             678988