HHsearch alignment for GI: 254780784 and conserved domain: PRK08406
>PRK08406 transcription elongation factor NusA-like protein; Validated.
Probab=93.70 E-value=0.18 Score=30.72 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 35667433224487579999771150000378607799899986888998088089999689899999999999852475
Q gi|254780784|r 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617 (699)
Q Consensus 538 ~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~ 617 (699)
T Consensus 20 T~~~~~DCi~d~~~~riiFvV~~g~mG~AIGk~G~~Ik~l~~~lgkkIdiVe------~seD------p~~FI~N~l~Pa 87 (142)
T PRK08406 20 TGATVRDCIIDEEYDRIIFVVKEGDMGLAIGKGGENVKRLKEKLGKDIELVE------YSED------PEEFIKNLLAPA 87 (142)
T ss_pred HCCCEEEEEECCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHCCCEEEEE------CCCC------HHHHHHHCCCCC
T ss_conf 7997235687089988999987676889758796079999998589458996------4789------999998706932
Q ss_pred CCCCEEEEEEEEEE-ECCEEEECCCCCCEEE
Q ss_conf 46867899999994-1536998287971048
Q gi|254780784|r 618 EVNKIYKGQVVKVM-DFGAFVHFCGARDGLV 647 (699)
Q Consensus 618 e~g~~y~~~v~~i~-~fGafve~~~g~~gl~ 647 (699)
T Consensus 88 ~V~~V~---i~~~~~~~~a~V~V~~~~~~lA 115 (142)
T PRK08406 88 KVKSVK---ISEKNGKKVAYVTVAPEDKGIA 115 (142)
T ss_pred EEEEEE---EECCCCCEEEEEEECHHHHHHH
T ss_conf 567999---9827996899999685652043