HHsearch alignment for GI: 254780784 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=98.69  E-value=1.4e-07  Score=80.43  Aligned_cols=73  Identities=30%  Similarity=0.494  Sum_probs=62.2

Q ss_pred             CCCCCCCEEEEEEEEEEECCEEEECCC-CCCEEEEEEECCCCCCC-----------CHHHHCCCCCEEEEEEEEECC-CC
Q ss_conf             475468678999999941536998287-97104886631444547-----------855603259889999997868-99
Q gi|254780784|r  615 DVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA-----------KTSDVVKEGDTVWVKLLDFDD-RG  681 (699)
Q Consensus       615 ~~~e~g~~y~~~v~~i~~fGafve~~~-g~~gl~HiS~l~~~~v~-----------~~~d~~~~Gd~i~vk~~~~d~-~g  681 (699)
T Consensus       639 m~~~iGe~f~G~IsgVt~fG~FVeL~~~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~  718 (813)
T PRK11642        639 MLDQVGNVFKGVIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDER  718 (813)
T ss_pred             HHHHCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHC
T ss_conf             99744997889996076100899954886378888012888318983357889865079788269979999999742137


Q ss_pred             CEEEEE
Q ss_conf             866687
Q gi|254780784|r  682 KIKLSM  687 (699)
Q Consensus       682 ~i~lSr  687 (699)
T Consensus       719 qIDfeL  724 (813)
T PRK11642        719 KIDFSL  724 (813)
T ss_pred             EEEEEE
T ss_conf             355898