HHsearch alignment for GI: 254780784 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=98.69 E-value=1.4e-07 Score=80.43 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=62.2
Q ss_pred CCCCCCCEEEEEEEEEEECCEEEECCC-CCCEEEEEEECCCCCCC-----------CHHHHCCCCCEEEEEEEEECC-CC
Q ss_conf 475468678999999941536998287-97104886631444547-----------855603259889999997868-99
Q gi|254780784|r 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA-----------KTSDVVKEGDTVWVKLLDFDD-RG 681 (699)
Q Consensus 615 ~~~e~g~~y~~~v~~i~~fGafve~~~-g~~gl~HiS~l~~~~v~-----------~~~d~~~~Gd~i~vk~~~~d~-~g 681 (699)
T Consensus 639 m~~~iGe~f~G~IsgVt~fG~FVeL~~~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~ 718 (813)
T PRK11642 639 MLDQVGNVFKGVIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDER 718 (813)
T ss_pred HHHHCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHC
T ss_conf 99744997889996076100899954886378888012888318983357889865079788269979999999742137
Q ss_pred CEEEEE
Q ss_conf 866687
Q gi|254780784|r 682 KIKLSM 687 (699)
Q Consensus 682 ~i~lSr 687 (699)
T Consensus 719 qIDfeL 724 (813)
T PRK11642 719 KIDFSL 724 (813)
T ss_pred EEEEEE
T ss_conf 355898