HHsearch alignment for GI: 254780784 and conserved domain: PRK11824

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=99.87  E-value=1.6e-20  Score=185.70  Aligned_cols=301  Identities=19%  Similarity=0.311  Sum_probs=220.8

Q ss_pred             EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCC-------CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             899999140045467289999789489999972788887-------7773540686652320133678887357898871
Q gi|254780784|r   14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-------GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE   86 (699)
Q Consensus        14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~-------~~dFfPLtVdY~Ek~yAaGkIPGgF~kREgrpsd   86 (699)
T Consensus       325 RPI~~EvgvLPr-~HGSaLFTRGETQaL~~~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~-----g~~~~p~R  398 (694)
T PRK11824        325 RPISIEVGVLPR-THGSALFTRGETQALVVATLGTLRDAQIIDGLEGEYKKRFMLHYNFPPYSVGET-----GRVGSPGR  398 (694)
T ss_pred             CCCEEECCCCCC-CCCCEEEECCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCC-----CCCCCCCC
T ss_conf             452578388788-874345871560699999725830101001567651104799747899767876-----67789763


Q ss_pred             HHHHHHHHHHCCCCCCCC--CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC--CCCEE
Q ss_conf             453111123212677674--68868837899998218888778999999999987326882354112355204--77324
Q gi|254780784|r   87 NEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYV  162 (699)
Q Consensus        87 ~EiL~sRlIDR~lRPLFP--kgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~i--dge~V  162 (699)
T Consensus       399 REIGHG~LAeRAL~~vlP~~e~FPYtIRvvSEileSNGSSS--MAsVCg~sLALmdAGVPik~~VAGIAmGLi~e~~~~~  476 (694)
T PRK11824        399 REIGHGALAERALEPVLPSEEEFPYTIRVVSEILESNGSSS--MASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKYA  476 (694)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHH--HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEE
T ss_conf             10033699999887118985669834899988004488534--4889878799885799646640047777787087379


Q ss_pred             ECCCC---CCCCCCCEEEEEECCCCHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             36850---00222101355305443233312444--32489999887531688999999999999983889864474312
Q gi|254780784|r  163 LNPRL---DEDQGSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF  237 (699)
Q Consensus       163 iNPt~---ee~esdLDLvVAGT~d~IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~~~  237 (699)
T Consensus       477 iLtDI~G~EDh~GDMDFKvAGT~~GITA~QmDiKi~Gi~~~il~~Al~qA~~gR~~IL~~M~~~i~~pr~~~s~~aP~i~  556 (694)
T PRK11824        477 VLSDILGDEDHLGDMDFKVAGTRDGITALQMDIKIDGITREIMEEALEQAKEGRLHILGKMNEAISEPRTELSPYAPRIE  556 (694)
T ss_pred             EEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf             99740444102477531562366644888740344796989999999999999999999998736665433356898799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH------HCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             57999999998988888741000122489999999999730223100------000267889999999999999987288
Q gi|254780784|r  238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS------SWNEGEIVSVFEDIQAKVVRTVMLDKK  311 (699)
Q Consensus       238 ~~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~------~~~~~~i~~af~~l~k~ivR~~ILeeg  311 (699)
T Consensus       557 ~~------~i~~~ki~~vIG~gG-----k~Ik~i~e~tg~~Idi~ddG~v~i~~~~~~~~~~A~~-~I~~i~~~--~evG  622 (694)
T PRK11824        557 TI------KIDPDKIRDVIGPGG-----KTIREITEETGAKIDIEDDGTVKIAASDGEAAEAAKE-RIEGITAE--PEVG  622 (694)
T ss_pred             EE------EECHHHHHHEECCCH-----HHHHHHHHHHCCEEEEECCCEEEEEECCHHHHHHHHH-HHHHHCCC--CCCC
T ss_conf             99------978798665068633-----8899999988988999689179999899999999999-99984576--8589


Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf             66588677533787998447546670
Q gi|254780784|r  312 VRMDGRDSETVRDISAQVGLLQRTHG  337 (699)
Q Consensus       312 ~R~DGR~~dEIRpIs~EvgvLPrvHG  337 (699)
T Consensus       623 ~iy~g~-V~~i~~fGafve~~pg~~G  647 (694)
T PRK11824        623 EIYEGK-VVRIVDFGAFVEILPGKDG  647 (694)
T ss_pred             CEEEEE-EEEEEECEEEEEECCCCEE
T ss_conf             779999-9999844189996799806