HHsearch alignment for GI: 254780784 and conserved domain: PRK12328
>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=95.74 E-value=0.073 Score=33.85 Aligned_cols=230 Identities=18% Similarity=0.234 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEEECCCEEEEEEEECCCCCCCCCCC-C
Q ss_conf 78899999999999999872886658867753378799844754667--00899987976899998168652122334-4
Q gi|254780784|r 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH--GSSLFIRGDTQAIVVVTLGTREDEQYVDS-L 366 (699)
Q Consensus 290 ~i~~af~~l~k~ivR~~ILeeg~R~DGR~~dEIRpIs~EvgvLPrvH--GSALFtRGETQaL~tvTLG~~~d~Q~iD~-l 366 (699)
T Consensus 113 ~AKQvi~QkireaEr~~i~~efk~r~G---------eiV~G~V~r~~~~~~~~vdlg~~ea~L------p~~eqip~E~y 177 (375)
T PRK12328 113 TLFKELEYHIQRLLEDSIFEKYKEKVG---------SVVFGTVVRVDNEENTFIEIDEIRAIL------PMKNRIKGEKF 177 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---------CEEEEEEEEEECCCCEEEECCCCEEEE------CHHHCCCCCCC
T ss_conf 999999999999999999999986429---------489999999965884899739817980------27763886558
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 544203587740588754453345567---65024679999999874107864468738999853110278522356677
Q gi|254780784|r 367 SGTQRNDFMMHYNFLPCATGEVSRMGA---PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443 (699)
Q Consensus 367 ~~~~~k~fmlHYNFPpfsvGE~~~~~~---~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~ 443 (699)
T Consensus 178 ~~Gdrik~~i~------~V~~~~~~gpqI~lSR---t~p~fv~~LFe~EVPEI~dG--~VeIk~IaRepG~RtKIA-V~S 245 (375)
T PRK12328 178 KVGDVVKAVLR------RVKIDKKNGIKLELSR---TSPKFLEALLELEVPEIKDG--EVIIIHCARIPGERAKVA-LFS 245 (375)
T ss_pred CCCCEEEEEEE------EEECCCCCCCEEEEEC---CCHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCEEEE-EEE
T ss_conf 99986999999------9872789995899967---98899999999888998489--689999853788740699-992
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCC-CCCCCHHHHHHHHH
Q ss_conf 77987625950225412133200440882899863144220136551001005565124432453-65568899999999
Q gi|254780784|r 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQ 522 (699)
Q Consensus 444 ~slal~dagvp~~~~VaGiamGLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~GiTa~QmDiK-~~gi~~~il~~al~ 522 (699)
T Consensus 246 ~-----d~~---iDpVGA-cVG~k--G~RI~~I~~EL~gE--------------------kIDii~~s~d~~~fi~nALs 294 (375)
T PRK12328 246 N-----SAN---IDPVGA-TVGVK--GVRINAVSKELNGE--------------------NIDCIEYSNIPEIFIARALA 294 (375)
T ss_pred C-----CCC---CCCEEE-EECCC--CCCHHHHHHHHCCC--------------------EEEEEECCCCHHHHHHHCCC
T ss_conf 5-----998---674047-88888--63099999985796--------------------27899778888999986378
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEE
Q ss_conf 99999999999998435667433224487579999771150000378607799899986888998088089
Q gi|254780784|r 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 (699)
Q Consensus 523 ~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v 593 (699)
T Consensus 295 PA~V~~V~i---------------~e-~~~~a~viV~~~qlSlAIGk~GqNvrLAskLtgw~IDI~s~~~~ 349 (375)
T PRK12328 295 PAIILSVKI---------------EK-IPKKAIVTLPSEQKSKAIGKNGINIRLASMLTGYEIELNEIGSV 349 (375)
T ss_pred CCCCEEEEE---------------EC-CCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEEEEHHHH
T ss_conf 553018999---------------56-88879999880143376269987199999977987998677887