HHsearch alignment for GI: 254780784 and conserved domain: PRK13806

>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=99.69  E-value=2.1e-16  Score=152.10  Aligned_cols=81  Identities=40%  Similarity=0.634  Sum_probs=73.5

Q ss_pred             CCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCC-CCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECC
Q ss_conf             24754686789999999415369982879710488663144-4547855603259889999997868-998666873047
Q gi|254780784|r  614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD  691 (699)
Q Consensus       614 ~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~-~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~  691 (699)
T Consensus       286 ~~k~~vG~~v~g~V~~i~~fGaFVel~~gieGlvHiSelSw~~~~~~p~~~~~~Gd~v~vkIl~iD~e~rrisLs~Kq~~  365 (489)
T PRK13806        286 GDRLEADQVVEGKVVRLAPFGAFVEVLPGVEGLVHISEMSWTRRVNKPEEVVAPGDTVSVKIKELDPAKRRISLSLRDAE  365 (489)
T ss_pred             HHHCCCCCEEEEEEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEHHHCC
T ss_conf             86367998379999972454069996388079998044255345789899606687299999997143378996567534


Q ss_pred             CCC
Q ss_conf             787
Q gi|254780784|r  692 QNT  694 (699)
Q Consensus       692 ~~~  694 (699)
T Consensus       366 ~nP  368 (489)
T PRK13806        366 GDP  368 (489)
T ss_pred             CCC
T ss_conf             695