HHsearch alignment for GI: 254780784 and conserved domain: PRK13806

>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=99.63  E-value=1.1e-15  Score=146.39  Aligned_cols=87  Identities=31%  Similarity=0.493  Sum_probs=54.0

Q ss_pred             HHHHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CC----CE
Q ss_conf             99985247546867899999994153699828797104886631444547855603259889999997868-99----86
Q gi|254780784|r  609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG----KI  683 (699)
Q Consensus       609 ~i~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g----~i  683 (699)
T Consensus       191 ~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdl~~GvdGllHiSeiSw~rv~~p~~~~~vGd~v~vkVl~id~e~~~~~~ri  270 (489)
T PRK13806        191 SLATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVEGMVHISELSWSRVQQADEAVSVGDRVRVKVLGIGEAPKGKGLRI  270 (489)
T ss_pred             HHHHHHHHHCCCCEECEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCHHHEECCCCEEEEEEEEEECCCCCCCEEE
T ss_conf             89999986114880042999975753899937980799983555865668888945169889999999864456665069


Q ss_pred             EEEEEECCCCCC
Q ss_conf             668730477878
Q gi|254780784|r  684 KLSMKVVDQNTG  695 (699)
Q Consensus       684 ~lSrk~~~~~~~  695 (699)
T Consensus       271 sLs~Kql~~dPW  282 (489)
T PRK13806        271 SLSAKQAGGDPW  282 (489)
T ss_pred             EEECCCCCCCHH
T ss_conf             860166788957