HHsearch alignment for GI: 254780784 and conserved domain: PRK13806
>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=99.63 E-value=1.1e-15 Score=146.39 Aligned_cols=87 Identities=31% Similarity=0.493 Sum_probs=54.0
Q ss_pred HHHHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CC----CE
Q ss_conf 99985247546867899999994153699828797104886631444547855603259889999997868-99----86
Q gi|254780784|r 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG----KI 683 (699)
Q Consensus 609 ~i~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g----~i 683 (699)
T Consensus 191 ~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdl~~GvdGllHiSeiSw~rv~~p~~~~~vGd~v~vkVl~id~e~~~~~~ri 270 (489)
T PRK13806 191 SLATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVEGMVHISELSWSRVQQADEAVSVGDRVRVKVLGIGEAPKGKGLRI 270 (489)
T ss_pred HHHHHHHHHCCCCEECEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCHHHEECCCCEEEEEEEEEECCCCCCCEEE
T ss_conf 89999986114880042999975753899937980799983555865668888945169889999999864456665069
Q ss_pred EEEEEECCCCCC
Q ss_conf 668730477878
Q gi|254780784|r 684 KLSMKVVDQNTG 695 (699)
Q Consensus 684 ~lSrk~~~~~~~ 695 (699)
T Consensus 271 sLs~Kql~~dPW 282 (489)
T PRK13806 271 SLSAKQAGGDPW 282 (489)
T ss_pred EEECCCCCCCHH
T ss_conf 860166788957