HHsearch alignment for GI: 254780784 and conserved domain: TIGR02696
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; InterPro: IPR014069 The of the characterization of two proteins from Streptomyces coelicolor ahs been presented . The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. It has also been shown that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase ..
Probab=98.70 E-value=1.3e-08 Score=88.78 Aligned_cols=203 Identities=21% Similarity=0.399 Sum_probs=166.0
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCC-CCCCCC-C-----CEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 89999914004546728999978948999997278888-777735-4-----0686652320133678887357898871
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFF-P-----LTVNYQERTYAVGKIPGGYLRRESRPTE 86 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~-~~~dFf-P-----LtVdY~Ek~yAaGkIPGgF~kREgrpsd 86 (699)
T Consensus 352 r~l~~ev~~~Pr-~hGsa~f~rGetq~lGv~tl~ml~m~q~~d~l~P~~~~ry~h~yn~PPys~Ge~-----GrvG~Pkr 425 (725)
T TIGR02696 352 RSLSAEVEVIPR-VHGSALFERGETQILGVTTLNMLKMEQQIDSLSPVTSKRYLHHYNFPPYSTGET-----GRVGSPKR 425 (725)
T ss_pred HHHHCCEEEECC-CCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC-----CCCCCCCC
T ss_conf 521000024133-101023205760354034778888876553116202300110037887566764-----56688753
Q ss_pred HHHHHHHHHHCCCCCCCC--CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC----
Q ss_conf 453111123212677674--68868837899998218888778999999999987326882354112355204773----
Q gi|254780784|r 87 NEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ---- 160 (699)
Q Consensus 87 ~EiL~sRlIDR~lRPLFP--kgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~idge---- 160 (699)
T Consensus 426 reiGhG~laeral~PvlP~~e~fPyair~vseal~snGsts--mGsvCastl~l~~aGvPl~~~vaGiamGl~~~~~~~~ 503 (725)
T TIGR02696 426 REIGHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTS--MGSVCASTLSLLNAGVPLKAPVAGIAMGLISDEVDGE 503 (725)
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 20256502211000344676656368999988741577630--3578999999986488620002012222222200354
Q ss_pred --EEECCCC---CCCCCCCEEEEEECCCCHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --2436850---0022210135530544323331244--43248999988753168899999999999998
Q gi|254780784|r 161 --YVLNPRL---DEDQGSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 (699)
Q Consensus 161 --~ViNPt~---ee~esdLDLvVAGT~d~IlMIE~~A--~EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~ 224 (699)
T Consensus 504 ~~y~~ltdi~Gaeda~GdmdfkvaGt~~~~talqldtkldGiP~~vla~al~~a~~ar~~il~~~~~~i~~ 574 (725)
T TIGR02696 504 TRYVALTDILGAEDALGDMDFKVAGTREFVTALQLDTKLDGIPAEVLAEALKQAKDARLAILDVLAEAIDT 574 (725)
T ss_pred EEEEEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 25676420113201025532122144787777753100257647899999998898899999999998507