HHsearch alignment for GI: 254780784 and conserved domain: TIGR03319
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=97.31 E-value=0.0028 Score=45.42 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6502467999999987410786446873899985311027852235667777987625950
Q gi|254780784|r 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 (699)
Q Consensus 394 ~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp 454 (699)
T Consensus 254 pvRREi-----Ar~aLe~Li~DGRIhP~rIEe~v~--k~~~e~~~~i~~~Ge~a~~elgi~ 307 (514)
T TIGR03319 254 PVRREI-----ARMALEKLIQDGRIHPARIEEMVE--KATKEVDNAIREEGEQAAFDLGVH 307 (514)
T ss_pred HHHHHH-----HHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 688999-----999999998749948899999999--999999999999999999981999