HHsearch alignment for GI: 254780784 and conserved domain: TIGR03591
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=99.86 E-value=2e-20 Score=184.75 Aligned_cols=300 Identities=19% Similarity=0.321 Sum_probs=219.7
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCC--------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999914004546728999978948999997278888777--------7354068665232013367888735789887
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ--------DFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~--------dFfPLtVdY~Ek~yAaGkIPGgF~kREgrps 85 (699)
T Consensus 321 RpIs~EvgvLPr-~HGSaLFtRGETQaL~v~TLG~~-~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~-----g~~~~p~ 393 (684)
T TIGR03591 321 RPISIEVGVLPR-THGSALFTRGETQALVVTTLGTE-RDEQIIDDLEGEYRKRFMLHYNFPPYSVGEV-----GRVGGPG 393 (684)
T ss_pred CCHHCCCCCCCC-CCCCEEEEECCCEEEEEEEECCC-HHHHHHCCCCCCCCEEEEEECCCCCCCCCCC-----CCCCCCC
T ss_conf 240203387577-77435788526507999950682-2211011457651104899747999767876-----7788998
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-C--CC
Q ss_conf 1453111123212677674--68868837899998218888778999999999987326882354112355204-7--73
Q gi|254780784|r 86 ENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-N--GQ 160 (699)
Q Consensus 86 d~EiL~sRlIDR~lRPLFP--kgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~i-d--ge 160 (699)
T Consensus 394 RREIGHG~LAeRAL~~vlP~~e~FPYtIRvvSeileSNGSSS--MAsVCg~sLALmdAGVPik~~VAGIAmGLi~e~d~~ 471 (684)
T TIGR03591 394 RREIGHGALAERALKAVLPSEEEFPYTIRVVSEILESNGSSS--MASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDER 471 (684)
T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 501226799999998518982338814899988004688434--289999999998679963665025777768737874
Q ss_pred EEECCCC---CCCCCCCEEEEEECCCCHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2436850---00222101355305443233312444--324899998875316889999999999999838898644743
Q gi|254780784|r 161 YVLNPRL---DEDQGSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235 (699)
Q Consensus 161 ~ViNPt~---ee~esdLDLvVAGT~d~IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~ 235 (699)
T Consensus 472 y~iLtDI~G~EDh~GDMDFKvaGT~~GITa~QmDiKi~Gi~~~il~~Al~qA~~~R~~IL~~M~~~i~~pr~~~s~~aP~ 551 (684)
T TIGR03591 472 FAVLSDILGDEDHLGDMDFKVAGTRDGITALQMDIKIDGITREIMEQALEQAKEGRLHILGEMNKVISEPRAELSPYAPR 551 (684)
T ss_pred EEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 79997313341014775305633666448887403558978999999999999999999999997352543344578875
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH------HCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1257999999998988888741000122489999999999730223100------0002678899999999999999872
Q gi|254780784|r 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS------SWNEGEIVSVFEDIQAKVVRTVMLD 309 (699)
Q Consensus 236 ~~~~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~------~~~~~~i~~af~~l~k~ivR~~ILe 309 (699)
T Consensus 552 i~~~------~i~~~ki~~vIG~gGk-----~Ik~i~~~tg~~I~i~ddG~v~i~~~~~~~~~~A~~-~I~~~~~--~~e 617 (684)
T TIGR03591 552 IETI------KINPDKIRDVIGPGGK-----VIREITEETGAKIDIEDDGTVKIAASDGEAAEAAIK-MIEGITA--EPE 617 (684)
T ss_pred EEEE------EECHHHHHHEECCCCH-----HHHHHHHHHCCEEEEECCCEEEEEECCHHHHHHHHH-HHHHHCC--CCC
T ss_conf 7999------9787886650787528-----898999988988998589089999899999999999-9998516--685
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 8866588677533787998447546670
Q gi|254780784|r 310 KKVRMDGRDSETVRDISAQVGLLQRTHG 337 (699)
Q Consensus 310 eg~R~DGR~~dEIRpIs~EvgvLPrvHG 337 (699)
T Consensus 618 vG~~y~g~-V~~i~~fGafve~~pg~~G 644 (684)
T TIGR03591 618 VGKIYEGK-VVRIMDFGAFVEILPGKDG 644 (684)
T ss_pred CCCEEEEE-EEEEEECEEEEEECCCCCE
T ss_conf 89779999-9999844089996799814