HHsearch alignment for GI: 254780784 and conserved domain: TIGR03665
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=98.34 E-value=1.4e-06 Score=72.27 Aligned_cols=80 Identities=35% Similarity=0.637 Sum_probs=68.4
Q ss_pred EEECCCCEEEEECCCCHHHHHHHHHHCCEEEEE-CCEEEEEE--ECCHHHHHHHHHHHHHHCC--CCC-----CCCEEEE
Q ss_conf 997711500003786077998999868889980-88089999--6898999999999998524--754-----6867899
Q gi|254780784|r 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIA--SSSLAEIEAAREMIRSITD--VPE-----VNKIYKG 625 (699)
Q Consensus 556 ~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~-d~g~v~i~--~~~~~~~~~a~~~i~~~~~--~~e-----~g~~y~~ 625 (699)
T Consensus 2 v~IP~~Rig~lIGk~G~~~k~Iee~~~~~i~ids~tg~V~i~~~~~Dp~~~~KA~d~I~Ai~rGf~pe~A~~Ll~dd~~l 81 (172)
T TIGR03665 2 VKIPKDRIGVLIGKGGETKKEIEERTGVKLDIDSETGEVKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALKLLDDDYML 81 (172)
T ss_pred CCCCHHHEEEEECCCCCHHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEE
T ss_conf 66873563555568701399999997987998468634883578899899999999999987699989999873657069
Q ss_pred EEEEEEECCE
Q ss_conf 9999941536
Q gi|254780784|r 626 QVVKVMDFGA 635 (699)
Q Consensus 626 ~v~~i~~fGa 635 (699)
T Consensus 82 evidi~~~~~ 91 (172)
T TIGR03665 82 EVIDLKEYGK 91 (172)
T ss_pred EEEEHHHHCC
T ss_conf 9998898447