HHsearch alignment for GI: 254780784 and conserved domain: TIGR03665

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=98.34  E-value=1.4e-06  Score=72.27  Aligned_cols=80  Identities=35%  Similarity=0.637  Sum_probs=68.4

Q ss_pred             EEECCCCEEEEECCCCHHHHHHHHHHCCEEEEE-CCEEEEEE--ECCHHHHHHHHHHHHHHCC--CCC-----CCCEEEE
Q ss_conf             997711500003786077998999868889980-88089999--6898999999999998524--754-----6867899
Q gi|254780784|r  556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIA--SSSLAEIEAAREMIRSITD--VPE-----VNKIYKG  625 (699)
Q Consensus       556 ~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~-d~g~v~i~--~~~~~~~~~a~~~i~~~~~--~~e-----~g~~y~~  625 (699)
T Consensus         2 v~IP~~Rig~lIGk~G~~~k~Iee~~~~~i~ids~tg~V~i~~~~~Dp~~~~KA~d~I~Ai~rGf~pe~A~~Ll~dd~~l   81 (172)
T TIGR03665         2 VKIPKDRIGVLIGKGGETKKEIEERTGVKLDIDSETGEVKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALKLLDDDYML   81 (172)
T ss_pred             CCCCHHHEEEEECCCCCHHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEE
T ss_conf             66873563555568701399999997987998468634883578899899999999999987699989999873657069


Q ss_pred             EEEEEEECCE
Q ss_conf             9999941536
Q gi|254780784|r  626 QVVKVMDFGA  635 (699)
Q Consensus       626 ~v~~i~~fGa  635 (699)
T Consensus        82 evidi~~~~~   91 (172)
T TIGR03665        82 EVIDLKEYGK   91 (172)
T ss_pred             EEEEHHHHCC
T ss_conf             9998898447