HHsearch alignment for GI: 254780784 and conserved domain: cd00164
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.97 E-value=1e-09 Score=97.62 Aligned_cols=64 Identities=47% Similarity=0.724 Sum_probs=61.1
Q ss_pred EEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEE
Q ss_conf 899999994153699828797104886631444547855603259889999997868-9986668
Q gi|254780784|r 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686 (699)
Q Consensus 623 y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lS 686 (699)
T Consensus 1 v~G~V~~i~~~G~fV~~~~~~~gli~~s~~s~~~~~~~~~~~~~G~~V~~~Vi~vd~~~~~i~LS 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEECC
T ss_conf 98999999784599998987178898889167653595109859999999999998999989769