HHsearch alignment for GI: 254780784 and conserved domain: cd02394

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=97.95  E-value=2.8e-05  Score=61.60  Aligned_cols=57  Identities=37%  Similarity=0.539  Sum_probs=51.3

Q ss_pred             EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEEC----CEEEEEEECCHHHHHHHHHHHH
Q ss_conf             999977115000037860779989998688899808----8089999689899999999999
Q gi|254780784|r  554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD----DGTVKIASSSLAEIEAAREMIR  611 (699)
Q Consensus       554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d----~g~v~i~~~~~~~~~~a~~~i~  611 (699)
T Consensus         2 ~~i~vp~~~h~~iIG~~G~~i~~i~~~~~~~I~~P~~~~~~~~V~I~G~-~~~V~~A~~~i~   62 (62)
T cd02394           2 EEVEIPKKLHRFIIGKKGSNIRKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKAKEEIL   62 (62)
T ss_pred             CEEEECHHHCCCEECCCCCCHHHHHHHHCCEEEECCCCCCCCEEEEECC-HHHHHHHHHHHC
T ss_conf             4899897881975889997399999985979995899999983999839-999999999749