HHsearch alignment for GI: 254780784 and conserved domain: cd02394
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=97.95 E-value=2.8e-05 Score=61.60 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=51.3
Q ss_pred EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEEC----CEEEEEEECCHHHHHHHHHHHH
Q ss_conf 999977115000037860779989998688899808----8089999689899999999999
Q gi|254780784|r 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD----DGTVKIASSSLAEIEAAREMIR 611 (699)
Q Consensus 554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d----~g~v~i~~~~~~~~~~a~~~i~ 611 (699)
T Consensus 2 ~~i~vp~~~h~~iIG~~G~~i~~i~~~~~~~I~~P~~~~~~~~V~I~G~-~~~V~~A~~~i~ 62 (62)
T cd02394 2 EEVEIPKKLHRFIIGKKGSNIRKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKAKEEIL 62 (62)
T ss_pred CEEEECHHHCCCEECCCCCCHHHHHHHHCCEEEECCCCCCCCEEEEECC-HHHHHHHHHHHC
T ss_conf 4899897881975889997399999985979995899999983999839-999999999749