HHsearch alignment for GI: 254780784 and conserved domain: cd04473

>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.

Probab=99.57  E-value=1.2e-14  Score=137.82  Aligned_cols=64  Identities=38%  Similarity=0.606  Sum_probs=60.9

Q ss_pred             CCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf             475468678999999941536998287971048866314445478556032598899999978689986668
Q gi|254780784|r  615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS  686 (699)
Q Consensus       615 ~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lS  686 (699)
T Consensus        12 ~dlevG~~y~G~V~~v~~fGaFV~l~~~~~GLiHiS~l~~~--------~~vGD~V~VkV~~I~~~Gki~L~   75 (77)
T cd04473          12 EDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLLRD--------YEVGDEVIVQVTDIPENGNIDLI   75 (77)
T ss_pred             CCCCCCCEEEEEEEEEEECCEEEECCCCCEEEEEEHHCCCC--------CCCCCEEEEEEEEECCCCCEEEE
T ss_conf             03523999999998896628899926998796893166687--------89999999999999999979318