HHsearch alignment for GI: 254780784 and conserved domain: pfam03725
>pfam03725 RNase_PH_C 3' exoribonuclease family, domain 2. This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components contain a copy of this domain. A hypothetical protein from S. pombe appears to belong to an uncharacterized subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Probab=98.90 E-value=1.5e-09 Score=96.42 Aligned_cols=64 Identities=34% Similarity=0.625 Sum_probs=60.0
Q ss_pred CCEEEEEEEECCCCEEECCCCCC---CCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54112355204773243685000---22210135530544323331244432489999887531688
Q gi|254780784|r 147 GPVVGAQVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210 (699)
Q Consensus 147 GPVaaVRVG~idge~ViNPt~ee---~esdLDLvVAGT~d~IlMIE~~A~EVsEe~mleAI~~Ahe~ 210 (699)
T Consensus 1 ~~v~avtvg~i~~~~i~dpt~~Ee~~~~~~l~v~~~~~~~~v~~~~~g~~~l~~~~l~~~l~~a~~~ 67 (67)
T pfam03725 1 GPVAAVTVGKIDGELVLDPTLEEESLADSDLTIVVAGTGDIVALMKEGGGGLTEEELLEALELAHKG 67 (67)
T ss_pred CCEEEEEEEEECCEEEECCCHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9889999999999999998967863314736899968999999991899785999999999987079