HHsearch alignment for GI: 254780784 and conserved domain: pfam03726

>pfam03726 PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain. This family contains the RNA binding domain of Polyribonucleotide nucleotidyltransferase (PNPase) PNPase is involved in mRNA degradation in a 3'-5' direction.

Probab=99.26  E-value=4e-11  Score=109.16  Aligned_cols=80  Identities=35%  Similarity=0.558  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             79999999989888887410001224899999999997302231000002678899999999999999872886658867
Q gi|254780784|r  239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD  318 (699)
Q Consensus       239 ~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~~~~~~~i~~af~~l~k~ivR~~ILeeg~R~DGR~  318 (699)
T Consensus         1 EL~~~V~~~~~~~l~~A~~i~dK~eR~~a~~~ik~~~~e~l~~e~~~~~~~~i~~~~~~lek~~vR~~Il~~~~RiDGRd   80 (80)
T pfam03726         1 ELEEKVAALAEERLSEAYTITGKQERYAALDEIKADVVAAFAEEEDEEDEKEIKDIFKALEKKVVRSRILDGGPRIDGRD   80 (80)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             98999999999999999730135999999999999999885011541139999999999999999999985899999988