BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] (699 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/699 (100%), Positives = 699/699 (100%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT Sbjct: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH Sbjct: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG Sbjct: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL Sbjct: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA Sbjct: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE Sbjct: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP Sbjct: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS Sbjct: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS Sbjct: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL Sbjct: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT Sbjct: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV Sbjct: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 >gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 699 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/698 (84%), Positives = 641/698 (91%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDVHTVE++WAGRPLKLETGRIA+QSDGAVLATYGETVVLATVV+DR+LK QDFFPLT Sbjct: 1 MFDVHTVEVDWAGRPLKLETGRIAQQSDGAVLATYGETVVLATVVFDRNLKKDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYAVGKIPGGYLRRESRPTENE+LISRMIDRSIRPLF K YKNETQVIINVMQH Sbjct: 61 VNYQERTYAVGKIPGGYLRRESRPTENEVLISRMIDRSIRPLFPKHYKNETQVIINVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180 DLE+ PHVVSMVA SAALMLSGLPFEGP+ GAQVDY++ +YVLNP LD ++GSLDLFVSG Sbjct: 121 DLENDPHVVSMVAVSAALMLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEKGSLDLFVSG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T+DAVLMVELEANQLSEDVVLDAI+FGH ECKPVIEAISKL KMCAKEPI DSKD SKL Sbjct: 181 TRDAVLMVELEANQLSEDVVLDAIMFGHAECKPVIEAISKLVKMCAKEPIFFDSKDLSKL 240 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 EEEM M DLR S FIPEK VRC+ I+D+K+K+ S+F +E SSW E E+ SVFED+ A Sbjct: 241 EEEMFHMFGADLRNSSFIPEKSVRCEAINDIKEKVFSHFCTEDSSWTEEEVSSVFEDMHA 300 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVR +++ K+RMDGRD ETVRDISAQVGLLQRTHGSS F RG TQAIVVVTLGT+EDE Sbjct: 301 KVVRASIVENKIRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDE 360 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 QYVDSL+GTQRNDFMMHYNF P + GEV R+GAPSRREIGHGRLARRAIHP+LPQ AQFP Sbjct: 361 QYVDSLAGTQRNDFMMHYNFFPFSVGEVGRIGAPSRREIGHGRLARRAIHPILPQAAQFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YTLRIVSEIT S+GSSSMATVCG+SLALMDAGVPISKPVAGIAMGLVK+ D F++LSDIS Sbjct: 421 YTLRIVSEITGSNGSSSMATVCGASLALMDAGVPISKPVAGIAMGLVKEDDQFVVLSDIS 480 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G+EDH GHMDFKV+GTDSGITAMQMDMKI GIS++I+++ALQQ KRGRLHILNEMSKV+S Sbjct: 481 GEEDHFGHMDFKVSGTDSGITAMQMDMKIRGISKDIIMVALQQGKRGRLHILNEMSKVIS 540 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 ESRLQLGEFTPRVEIM IPPDQIRNVIG+GGKVIR IVE+TGAKVNIDDDGT+KIASSS Sbjct: 541 ESRLQLGEFTPRVEIMVIPPDQIRNVIGVGGKVIRNIVEKTGAKVNIDDDGTIKIASSSP 600 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AEIEAA EMIR ITDVPEVNKIYKG VVKVMDFGAFV+FCGARDGLVHIS LSTERVAKT Sbjct: 601 AEIEAACEMIRLITDVPEVNKIYKGHVVKVMDFGAFVNFCGARDGLVHISHLSTERVAKT 660 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SD+VKEGD VWVKLLDFDDRGKIKLSMKVVDQNTGKPI Sbjct: 661 SDIVKEGDVVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 >gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii NGR234] gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii NGR234] Length = 717 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/703 (68%), Positives = 573/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQVI+ VMQH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P VVSMVAASAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ+AVLMVE EA +L EDV+L A++FG +PVI+AI KLA++ AKEP D +D S Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFDPEDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE M + +++LR + I EK R +D +K K+ +F E+ + EI SVF+ Sbjct: 241 LENAMLAIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHTAEEIGSVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + FM+HYNF P + GE RMG+P RREIGHG+LA RAI P+LP+ Sbjct: 361 GEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +L Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SSS EIEAAR+ I SI PEV +IY+G VVK DFGAFV+F GARDGLVHISQL++ER Sbjct: 601 SSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703 >gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 712 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/701 (66%), Positives = 569/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L EDV+L A++FGH +PV++AI KLA++ AKEP +D+S Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I +K R +D +K K+ ++F E + + E+ ++F+ Sbjct: 241 LESEMLGLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PE+ +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701 >gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3] gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3] Length = 715 Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/701 (66%), Positives = 571/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV +S K GQDFFPLT Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ LDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +L+EDV+L A++FGH +PVI+AI KLA++ AKEP + +DFS Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I EK R +D +K K+ ++F E + ++ EI +VF+ Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S EIEAAR+ I SI PEV +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEV 701 >gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium radiobacter K84] gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium radiobacter K84] Length = 710 Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/701 (67%), Positives = 568/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+HTVEIEWAGRPLKLETG+IARQ+DGAV+ATYGETVVLATVV +S K GQDFFPLT Sbjct: 1 MFDIHTVEIEWAGRPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++SMVA SAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ+AVLMVE EA +LSEDV+L A++FGH +PVI+AI KLA++ AKEP +D S Sbjct: 181 GTQEAVLMVESEAKELSEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPEDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE EM + + +LR + +K R +D +K K+ ++F E ++ I +VF+ Sbjct: 241 LEAEMLSIAEGELRTAYKNTQKAERYAAVDAVKAKVKAHFFPEGVEPKYSAEVIGAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD GITA+QMD+KI GI+E IM +AL QAK GRLHIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTDGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PEV +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ + Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEL 701 >gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae WSM419] gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae WSM419] Length = 714 Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/702 (67%), Positives = 573/702 (81%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQVII VMQH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+ Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +LSE+++L A++FG +PVI+A+ +LA++ AKEP + D S Sbjct: 181 GTQDAVLMVESEAKELSEEIMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFEPDDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE M + +EDLR + I EK R +D +K K+ +F E+ + EI SVF+ Sbjct: 241 LENAMLSIAEEDLRKAYKITEKAQRYAAVDAVKAKVKEHFLPEGVENPAHTAEEIASVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD K R+DGRD TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+S EIEAAR+ I SI PEV ++Y+G VVK DFGAFV+F GARDGLVHISQL++ER Sbjct: 601 SASGKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEI 702 >gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium tumefaciens str. C58] gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium tumefaciens str. C58] Length = 713 Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/701 (66%), Positives = 571/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV +S K GQDFFPLT Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ LDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +L+E+++L A++FGH +PVI+AI KLA++ AKEP + +DFS Sbjct: 181 GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I EK R +D +K K+ ++F E + ++ EI +VF+ Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVKAHFLPEEGEAKYSPEEIGAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S EIEAAR+ I SI PEV +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEV 701 >gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti 1021] gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti BL225C] gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti AK83] gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti 1021] gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti AK83] gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti BL225C] Length = 717 Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/703 (67%), Positives = 573/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQVII VMQH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+ Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ+AVLMVE EA +L EDV+L A++FG +PVI+A+ +LA++ AKEP + +D S Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFNPEDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE M + +++LR + I EK R +D +K K+ +F E+ + EI +VF+ Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGVENPAHTAEEIAAVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD K R+DGRD TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGTD+GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+S EIEAAR+ I SI PEV ++Y+G VVK DFGAFV+F GARDGLVHISQL++ER Sbjct: 601 SASAKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703 >gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. viciae 3841] gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Rhizobium leguminosarum bv. viciae 3841] Length = 712 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/701 (66%), Positives = 568/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+EDV+L A++FGH +PV++AI KLA++ AKEP D+S Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I +K R +D +K K+ ++F E + + E+ ++F+ Sbjct: 241 LESEMLGLAEGELRNAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PE+ ++Y+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701 >gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 712 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/701 (66%), Positives = 568/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PV++AI KLA++ AKEP D+S Sbjct: 181 GTYDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I +K R +D +K K+ ++F E + + E+ ++F+ Sbjct: 241 LETEMLGLAEGELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PE+ ++Y+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701 >gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652] gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli CIAT 652] Length = 706 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/695 (66%), Positives = 564/695 (81%), Gaps = 3/695 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 +EIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLTVNYQE+ Sbjct: 1 MEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 60 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QHDLE++P Sbjct: 61 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNP 120 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+GT DAV Sbjct: 121 DILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAV 180 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 LMVE EA +L EDV+L A++FGH +PV++AI KLA++ AKEP +D+S LE EM Sbjct: 181 LMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSALESEML 240 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQAKVV 303 + + +LR + I +K R +D +K K+ ++F E + + E+ ++F+ +QAK+V Sbjct: 241 GLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKHLQAKIV 300 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYV Sbjct: 301 RWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYV 360 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 DSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTL Sbjct: 361 DSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTL 420 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDE Sbjct: 421 RVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDE 480 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K ++ESR Sbjct: 481 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKAITESR 540 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIASSS EI Sbjct: 541 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEI 600 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAAR+ I SI PE+ +IY+G VVK DFGAFV+F GARDGLVHISQL++ERVAKT DV Sbjct: 601 EAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTQDV 660 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 VKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 695 >gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42] gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli CFN 42] Length = 712 Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/701 (66%), Positives = 572/701 (81%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SM+A+SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENNPDILSMIASSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L EDV+L A++FGH +PV++AI KLA++ AKEP +D+S+ Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 LE EM + + +LR + I +K R +D +K K+ ++F E + + E+ ++F+ Sbjct: 241 LEGEMLKHFEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PE+ +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT+DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 AKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701 >gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4] gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4] Length = 714 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/702 (65%), Positives = 568/702 (80%), Gaps = 3/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+VH+VEIEWAGRPLKLETG+IARQ+DGAVLA+YGETVVLATVV +S K GQDFFPLT Sbjct: 1 MFNVHSVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ LDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +L+EDV+L A++FGH +PVI+AI KLA++ AKEP + +D S Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297 LE EM + + +LR + I +K R +D +K K+ ++F E + + I +VF+ Sbjct: 241 LEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKVKAHFFPEGAEPKYTNEVIGAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMAN 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KIAS Sbjct: 541 AITEGRSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S EIEAAR+ I SI PE+ +Y+G VVK DFGAFV+F G+RDGLVHISQL+ +RV Sbjct: 601 ASGKEIEAARKWIHSIVAEPEIGVVYEGTVVKTADFGAFVNFFGSRDGLVHISQLAVDRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 AKT DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 AKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 702 >gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 712 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/701 (66%), Positives = 566/701 (80%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV ++ K GQDFFPLT Sbjct: 1 MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+E+V+L A++FGH +PV++AI KLA++ AKEP +D+S+ Sbjct: 181 GTYDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE EM + + +LR I +K R +D +K K+ ++F E + I +VF+ Sbjct: 241 LEAEMLKHFEAELREGYKITQKADRYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAK+VR +LD K R+DGRD TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS EIEAAR+ I SI PE+ +IY+G VVK DFGAFV+F GARDGLVHISQL++ERV Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701 >gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae str. Houston-1] gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str. Houston-1] Length = 733 Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV +S K QDFFPLT Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE++YAVG+IPGGYL+RESRP+ENE LISR+IDR IRPLF+ YKN+TQVI++V+QH Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA +L ED++L A++FGH +P+++AI KLA++ AK+P +D S Sbjct: 181 GTENAVLMVESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPRDFVPEDLSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE M +M ++D+R + I +K R +D LK ++++ F + E ++ +I +VF+ Sbjct: 241 LETAMLEMAEKDIRKAYTITDKQERYAALDALKTEIINKFMPETEEDCKFSVDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR+ +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+G + F++HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M I D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT++IA Sbjct: 541 KALTSARAELSEFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGAKINIEDDGTIRIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ IEAA+ I SI D PEV IY+G VVK +FGAFV+F G+RDGLVHISQL+TER Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V KT+DVVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I+ Sbjct: 661 VTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQKTGKEII 703 >gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica DFL-43] gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica DFL-43] Length = 706 Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/702 (66%), Positives = 561/702 (79%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H VEIEW GRPL LETG++ARQ+DGAV+ATYGETVVLATVV +S K GQDFFPLT Sbjct: 1 MFDTHKVEIEWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L SR+IDR +RPLF YKN+TQ+II VMQH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++++VAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+EDV+L A++FGH +PVI+AI KLA+ AKEP + D S Sbjct: 181 GTNDAVLMVESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAAAKEPRDFSAPDHSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 LE EM M + DLR + +K R ID++K K+ +F+ E + I +VF+ Sbjct: 241 LEAEMLSMCEADLRKAYENTDKAARYAAIDEVKAKVKEHFAPAEGEEPRFTSEVIGAVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAKVVR +L+ K R+DGRD TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 SLQAKVVRGAILETKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+GT++ FM+HYNF P + GE R G+P RREIGHG+LA RAI+P++P Sbjct: 361 GEDEQYVDSLTGTKKATFMLHYNFPPYSVGETGRTGSPGRREIGHGKLAWRAINPMMPSA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+DF +L Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT GITA+QMD+KI GI+E IM +AL QA+ GRLHIL EM Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMG 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 L+ESR QLGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NIDDDGT+KIA Sbjct: 541 NALTESRGQLGEFAPRIEVMNIPVDKIRDVIGTGGKIIREIVEKTGAKINIDDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SSS EIEAA++ I SI PEV IY+G VVKV DFGAFV+F G +DGLVHISQL+ ER Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGVIYEGTVVKVADFGAFVNFFGPKDGLVHISQLAAER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKTSDVVKEG VWVKLL FD+RGK++LSMKVVDQ TGK + Sbjct: 661 VAKTSDVVKEGQKVWVKLLGFDERGKVRLSMKVVDQETGKEV 702 >gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi ATCC 49188] gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 713 Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/703 (65%), Positives = 565/703 (80%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+V+L A++FG +PVI+AI KLA++ AKEP +D S Sbjct: 181 GTADAVLMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE +M +++ DLR + I EK R +D K K ++F E ++ + +VF+ Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYVAVDAAKAKAKAHFFPEGVEEPEFSAEKFATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RRE+GHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 DQFPYTIRSVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+++R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK +V Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEVV 703 >gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1] gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1] Length = 715 Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV + K G DFFPLT Sbjct: 1 MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQVII V+QH Sbjct: 61 VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++SMVAASAAL LSG+PF GPV A+V Y+ G+Y+LNP LDE + LDL V+ Sbjct: 121 DLENDPDILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA++L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S Sbjct: 181 GTSDAVLMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE EM ++++ DLR + I K R ++ K K+ F +E W ++ +VF+ Sbjct: 241 LEAEMLKVVEADLRDAYKITNKQARYDAVNAAKAKVKEAFLPEGAEAYKWTPEQVATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD +VR I A+VG+L RTHGS++F RG+TQA+VV TLGT Sbjct: 301 ALQAKIVRWNILDTGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RA+HP+LP Sbjct: 361 GEDEQYVDSLTGTVKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAP 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L Sbjct: 421 EQFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI+E IM +AL+QAK GRLHIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 LSESR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 NALSESRGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAAR+ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ ER Sbjct: 601 SSNGKEIEAARKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAPER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V KT+DVVKEGD V+VKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VQKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii as4aup] gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii as4aup] Length = 731 Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV +S K QDFFPLT Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L ED++L A++FGH +PV++AI KLA++ AK+P +D S+ Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE+ M +M ++D+R + I +K R ID LK ++++ F + E ++ +I +VF+ Sbjct: 241 LEKAMQKMAEQDIRKAYTITDKQERYAAIDALKTEILNKFMPETEEDCKFSADQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD + R+DGR+ TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 QLQAKIVRGNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + F++HYNF P + GE R G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M I D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA Sbjct: 541 KALTSARAELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ IEAA+ I SI D PEV IY+G VVK +FGAF++F G+RDGLVHISQL++ER Sbjct: 601 SADAKAIEAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFINFFGSRDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V KT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQKTGKEI 702 >gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3] Length = 733 Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/700 (63%), Positives = 569/700 (81%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV ++ K Q+FFPLT Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YAVGKIPGGY +RE+RP+E+E LISR+IDR IRPLF YKN+TQVI++V+QH Sbjct: 61 VNYQEKNYAVGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++++A+SAAL LSG+PF GP+ A++ Y NGQY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA++L EDV+L+A++FG +PVI AI KLA++ AKEP +D S Sbjct: 181 GTENAVLMVESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE M +MI++DLR + I +K R ID LK+K+++ F + E+ +N +I +VF+ Sbjct: 241 LENNMLKMIEQDLRDTYTITDKQKRHAAIDLLKEKVINNFIPEAEENCEFNTDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++QAK+VR +LD R+DGR+ VR I ++VGL RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 NLQAKIVRKNILDTGKRIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+G + F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+EIM IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA Sbjct: 541 KALARARSELSEFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS L IEAA+ I SI D PEV IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEVGSIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGK 700 >gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 733 Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV ++ K Q+FFPLT Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YAVGKIPGGYL+RESRP+E+E LISR+IDR IRPLF YKN+TQVI++V+QH Sbjct: 61 VNYQEKNYAVGKIPGGYLKRESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++++A+SAAL LSG+PF GP+ A++ Y NGQY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA++L EDV+LDA++FG +PVI AI KLA++ AKEP +D S Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296 LE++M +M+++DLR I +K R +D LK+++++ F+ E + +N +I +VF+ Sbjct: 241 LEKDMLEMVEQDLRDIYTITDKQKRHAALDFLKEEVINKFTQETEKNCEFNTDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGR+ VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 QLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+G + F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G F +L Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGAGGKVIREIVEKTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS L IEAA+ I SI D PEV IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++ Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703 >gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum CIP 105476] gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum CIP 105476] Length = 731 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/700 (62%), Positives = 566/700 (80%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV +S K QDFFPLT Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH Sbjct: 61 VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L ED++L A++FGH +PV++AI KLA++ AK+P +D S Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE+ M +M ++D+R + I +K R ID LK ++++ F + E ++ +I +VF+ Sbjct: 241 LEKAMQEMAEQDIRKAYTITDKQERYAAIDALKTEIINKFMPETEEDCQFSTDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD K R+DGR+ TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 QLQAKIVRGNILDTKKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+D+L+G + F++HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E++ I D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA Sbjct: 541 KALTSARAELSEFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ IEAA+ I SI D PEV IY+G VVK DFGAF++F G+RDGLVHISQL++ER Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGAIYQGTVVKTADFGAFINFFGSRDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V KT+D+VKEGD VWVKL+ FD+RGK++LSMK VDQ TGK Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKAVDQKTGK 700 >gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C] Length = 733 Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV + K Q+FFPLT Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YAVGKIPGGYL+RE+RP+E+E LISR+IDR IRPLF YKN+TQVI++V+QH Sbjct: 61 VNYQEKNYAVGKIPGGYLKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++++A+SAAL LSG+PF GP+ A++ Y NGQY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA++L EDV+LDA++FG +PVI AI KLA++ AKEP +D S Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296 LE++M +MI++DLR I +K R ID LK+++++ F+ E + +N +I +VF+ Sbjct: 241 LEKDMLKMIEQDLRDVYTITDKQKRHAAIDLLKEEVINKFTQETEKNCEFNTDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGR+ VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+G + F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G+ F +L Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGEQFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS L IEAA+ I SI D PEV IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++ Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703 >gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella bacilliformis KC583] gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis KC583] Length = 733 Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/702 (63%), Positives = 565/702 (80%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL +ETGR+ARQ+DGAV+ATYGETVVLATVV ++ K QDFFPLT Sbjct: 1 MFKTHKVEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF YKN+TQVI++V+QH Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SM+AASAAL LSG+PF GP+ GA+V Y NG YVLNP LDE + LDL V+ Sbjct: 121 DLENNPDILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA++LSE+V+L AI FG +PVI+AI +LA++ AKEP +DFS Sbjct: 181 GTENAVLMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296 LE+ M +MI++DLR + I +K R ID +K +++S F+ E + +I +VF+ Sbjct: 241 LEKTMLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 RLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVD L+G + F++HYNF P + GE R+ +P RREIGHG+LA RAIHP+LP Sbjct: 361 SEDEQYVDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F+IL Sbjct: 421 EAFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVIL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E+IM +AL+QAK GR HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+++R +L EF+PR+E+M IP ++IR VIG GGKVIR IVEQTGAK+NI+DDGT+KIA Sbjct: 541 KALTDARTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S IE A+ I SI D PEV IY+G VVK +FGAF++F G+ DGLVHISQL+++R Sbjct: 601 SPDTKSIETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASKR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+DVVKEGD VWV+L+ FD+RGKI+LSMKVVDQ TGK I Sbjct: 661 VAKTTDVVKEGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEI 702 >gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella schoenbuchensis R1] Length = 733 Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/700 (63%), Positives = 561/700 (80%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL LETG+IARQ+DGAVLATYGET+VLATVV ++ K QDFFPLT Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF YKN+TQVI++V+QH Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA +L EDV+L A+IFG +PVI+AI KLA++ AKEP +D S Sbjct: 181 GTENAVLMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPRDFIPEDLSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296 LE M M+++DL+ + I +K R ID +K ++V F S E+ +N +I +VF+ Sbjct: 241 LETTMLGMVEKDLQKAYTITDKQERHTAIDAIKAEVVDKFMSKIEENCEFNADQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGR TVR I ++VG+L R HGS+LF RG+TQA+V+ TLGT Sbjct: 301 HLQAKIVRQNILDTGKRIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+GT + F++HYNF P + GE R+ +P RREIGHG+LA RAIHP+LP Sbjct: 361 SEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL Sbjct: 421 DSFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAIL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL+QAK GR+HILNEMS Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMS 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVEQTGAK+NI+D+G +KIA Sbjct: 541 KALTSARDELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGAIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ IEAA+ I SI D PE+ IY+G VVK +FGAFV+F G+RDGLVHISQL++ER Sbjct: 601 STDAKAIEAAKRWIHSIVDEPEIGSIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V KT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK Sbjct: 661 VEKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGK 700 >gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana str. Toulouse] gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str. Toulouse] Length = 733 Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV ++ K QDFFPLT Sbjct: 1 MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YAVG+IPGGYL+RESRPTE+E LISR+IDR IRPLF+ YKN+TQVI++V+Q+ Sbjct: 61 VNYQEKFYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y N QY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L ED++L A++FGH +PV++AI KLA++ AK+P +D S Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIPEDLSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296 LE M +M+++D+R + I +K R ID LK ++++ F SE + ++ +I +VF+ Sbjct: 241 LETAMLEMVEQDIRKAYTITDKQERSTAIDVLKTEIINKFMSETEENCKFSADQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR+ +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + F++HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+ +P+AGIAMGL+K+G+ F IL Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAIL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QA+ GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTNNGITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M I D+IR+VIG GGKVIR IVEQTGAK+NI+D+GT+KIA Sbjct: 541 KALTSARDELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ IEAA+ I SI D PEV IY+G VVK +FGAFV+F G+RDGLVHISQL+TER Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGGIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V KT++VVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I Sbjct: 661 VTKTTNVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEI 702 >gi|254713431|ref|ZP_05175242.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M644/93/1] gi|254716212|ref|ZP_05178023.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M13/05/1] gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1] gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1] gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1] gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1] Length = 714 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis biovar Abortus 2308] gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC 23365] gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC 23445] gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19] gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str. 2308 A] gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6 str. 870] gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3 str. Tulya] gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3 str. 686] gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis M163/99/10] gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis B2/94] gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13] gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4 str. 292] gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis M292/94/1] gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M490/95/1] gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94] gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9 str. C68] gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM 4915] gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99] gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94] gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13] gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1] gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL 07-0026] gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5 str. B3196] gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653] gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2] gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH domain, type 1 [Brucella melitensis biovar Abortus 2308] gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC 23365] gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC 23445] gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19] gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str. 2308 A] gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM 4915] gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94] gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1] gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13] gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL 07-0026] gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5 str. B3196] gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2] gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653] Length = 714 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti MAFF303099] gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti MAFF303099] Length = 715 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/703 (64%), Positives = 561/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K G DFFPLT Sbjct: 1 MFNQHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+ YKN+TQ+++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+ Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+++L A++FGH +PVI+AI KLA++ AKEP + D+S Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 LE EM +++ ++L + I +K R +D +K K+ + F+ E + +I SVF+ Sbjct: 241 LEGEMLKIVGDELSNAYKITDKQQRYAAVDAVKAKVKAAFAPAEGEEPKYTSEQIGSVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++QAKVVR +LD R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I +I PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ ER Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 703 >gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1] gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1] Length = 714 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 1 str. 16M] gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis ATCC 23457] gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 1 str. Rev.1] gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 3 str. Ether] gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 2 str. 63/9] gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC 23457] gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 2 str. 63/9] gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis M28] gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis M5-90] Length = 714 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAEEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae 73] gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae 73] Length = 733 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/703 (62%), Positives = 571/703 (81%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV ++ K Q+FFPLT Sbjct: 1 MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YAVGKIPGGY +RE+RP E+E LISR+IDR IRPLF + YKN+TQVI++V+QH Sbjct: 61 VNYQEKNYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++++A+SAAL LSG+PF GP+ A++ Y NGQY+LNP +DE + LDL V+ Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA++L E+V+L+AI+FG +PVI AI KLA++ AKEP ++ S Sbjct: 181 GTENAVLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPRDFIPENLSV 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE+ M +M+++DL+ + I +K R ID LK+++++ F + E+ +N +I +VF+ Sbjct: 241 LEKNMLKMVEQDLKDAYTITDKQKRHTAIDVLKEEVINKFMQKTEENCEFNTDQIATVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGR+ VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL+G + F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAIL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R +L EF+PR+E+M I D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA Sbjct: 541 KALTSARSELSEFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS L IEAA+ I SI D PE+ IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEIGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++ Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703 >gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330] gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330] Length = 714 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDED+LG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC 25840] gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC 25840] Length = 714 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 557/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL +ETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E E + ++F Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFT 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33] gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33] gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33] Length = 714 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E E + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAI+P+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIYPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5 str. 513] gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str. 513] Length = 714 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKE +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703 >gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium opportunistum WSM2075] gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium opportunistum WSM2075] Length = 715 Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/703 (64%), Positives = 561/703 (79%), Gaps = 4/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K G DFFPLT Sbjct: 1 MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+ YKN+TQ+++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+ Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+++L A++FGH +PVI+AI KLA++ AKEP + D+S Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFTAPDYSV 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 LE EM +++ ++L + +K R +D +K K+ + F+ + + + +I SVF+ Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGDEAKYTSEQIGSVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++QAKVVR +LD R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT SGIT++QMD+KI GI+E IM +AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTTSGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I +I PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ ER Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ +GK IV Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQASGKEIV 703 >gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 715 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/702 (63%), Positives = 560/702 (79%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K G DFFPLT Sbjct: 1 MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+ YKN+TQ+++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+ Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+++L A++FGH +PVI+AI KLA++ AKEP + D+S Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 LE EM +++ ++L + +K R +D +K K+ + F+ E + + +I SVF+ Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGEDAKYTSEQIGSVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++QAKVVR +LD R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 HALTGARSELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I +I PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ +R Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANDR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEL 702 >gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 710 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/702 (62%), Positives = 562/702 (80%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H VEI+WAGRPL LETG+IARQ+DGAVLATYGETVVLATVV + K G DFFPLT Sbjct: 1 MFDTHKVEIDWAGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF++ YKNETQV++ V+QH Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V++MVAASAAL LSG+PF GP+ GA+V YING+Y LNP +DE + LDL V+ Sbjct: 121 DLENDPDVLAMVAASAALTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA++L+ED++L A++FGH +PVI+AI KLA+ AKEP D+S Sbjct: 181 GTEGAVLMVESEAHELAEDIMLGAVMFGHRGFQPVIDAIIKLAEHAAKEPREHVVADYSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE EM Q+++ +LR + I +K R +D +K K+ +F E + +++ ++ +VF+ Sbjct: 241 LEAEMLQLVEGELRDAYKITDKTQRYTAVDAVKAKVTGHFLPEGVEDTKYSKEQVGTVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD +TVR I ++ G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 SLQAKIVRWNILDTGGRIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ+VD+L+GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPAP 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSE+TES+GSSSMATVCG+SLALMDAGVP+ + VAGIAMGL+K+ + F +L Sbjct: 421 EQFPYTIRAVSEVTESNGSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQEMG 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + LSESR +LGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 QALSESRAELGEFAPRIEVMQIPTDKIRDVIGAGGKIIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SSS EIEAA++ I SI PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL+ +R Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLAADR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 702 >gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium LMG 3301] gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium LMG 3301] Length = 714 Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/702 (64%), Positives = 561/702 (79%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV++ V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE + LDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +LSE+++L A++FG +PVI+AI KLA++ AKEP +D S Sbjct: 181 GTSEAVLMVESEAQELSEEIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE +M +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSPEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKQPFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+++R Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK I Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEI 702 >gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris CGA009] gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris CGA009] Length = 722 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/699 (62%), Positives = 556/699 (79%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P V++MVAASAAL LSG+PF+GP+ A+V +IN +YVLNP LDE + L+L V+ Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI LA+ AKEP + D S+ Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM +++++LR + IP K R + +K+K +++F E +++ I VF++ Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSLSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699 >gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris TIE-1] gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris TIE-1] Length = 722 Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/699 (62%), Positives = 555/699 (79%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV +S ++G DF PLT Sbjct: 1 MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P V++MVAASAAL LSG+PF+GP+ A+V +IN +YVLNP LDE + L+L V+ Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI LA+ AKEP + D S+ Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM +++++LR + IP K R + +K+K +++F E +++ I VF++ Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSLSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PE+ +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEIGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699 >gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi HTCC2506] gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi HTCC2506] Length = 711 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/702 (63%), Positives = 565/702 (80%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEI+WAGR L LETG+IARQ+DGAVLATYGETVV+ATVV ++ K G DFFPLT Sbjct: 1 MFNSHKVEIDWAGRRLTLETGKIARQADGAVLATYGETVVMATVVSEKQPKAGFDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGG+ +RE RP+E E L SR+IDR IRPLF++ YKN+TQV++ V+QH Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLTVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P VV+MVAASAAL LSG+PF GP+ GA+V YING+Y +NP +DE + +LDL V+ Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE EA++LSEDV+L A++ GH +PVI+AI KLA++ AKEP ++ D S Sbjct: 181 GTKDAVLMVESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKEPREHNAPDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296 LE EM ++ ++DLR + I +K R + K+K+V++F E + + E+ +VF+ Sbjct: 241 LEGEMLKLAEDDLRAAYKITDKQERTNAVATAKEKVVAHFLPEGEDEPKFTKEEVNAVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD + R+DGR +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 SLQAKIVRWNILDTQSRIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ+VD+L+GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+ +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L E+R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NIDDDG +KIA Sbjct: 541 KALGEARSELGEFAPRIEVMQIPTDKIRDVIGSGGKVIREIVEKTGAKINIDDDGVIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SSS EIEAA++ I SI PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL R Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLGEGR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ++G+ I Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDSGEEI 702 >gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB18] gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB18] Length = 715 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/699 (62%), Positives = 550/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV +S K+G DF PLT Sbjct: 1 MFNIHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF ++NETQVI+ V+ H Sbjct: 61 VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P ++++VA+SAAL LSG PF+GP+ A+V +IN +YVLNP LDE LDL V+ Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PV++AI +LA+ AKEP + D S Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPREVAVVDESV 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+E+ +I+ +LR + IP K R + K+K+++++ E +++ I VF++ Sbjct: 241 LEKEILGLIEPELRAAYAIPVKQDRYAAVGKAKEKVMAHYFPEGQEPQYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR+I AQVG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+DSLSGT + F++HYNF P + GE RMG RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRMGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E I D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS Sbjct: 541 ALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGE 699 >gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] Length = 722 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P V++MVAASAAL LSG PF GP+ A+V +IN +YVLNP LDE + L+L V+ Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI +LA+ AKEP + D + Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELIEIDNAA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM +I+++LR + IP K R + +K+K +++F E +++ I VF++ Sbjct: 241 IEKEMLGLIEQELRAAYAIPVKQERYAAVGKVKEKALAHFFPEGQEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR I AQ G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+GT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GIT++QMD+KIGGI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQATGE 699 >gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] Length = 723 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/701 (61%), Positives = 555/701 (79%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H+VEI+W GRPLKLETG+IARQ+DGAV+A+YGETVVLATVV ++ ++G DF PLT Sbjct: 6 MFHKHSVEIDWGGRPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLT 65 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 66 VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 125 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D+E+ P V++MVAASAAL LSG+PF+GP+ A+V ++N +YVLNP LDE + L+L V+ Sbjct: 126 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTRLELVVA 185 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSED++L A++FGH +PVI AI +LA+ AKEP + + D S Sbjct: 186 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVAAIDNSA 245 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297 LE+EM +I++DLR + IP K R + K+K+++++ E + +++ + VF++ Sbjct: 246 LEKEMLALIEQDLRAAYAIPVKQDRYAAVGKAKEKVLAHYFPEGAEPKYDKLRVAEVFKE 305 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 306 LEAKIVRWNILDTGKRIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 365 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+DSLSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 366 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 425 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G + +LS Sbjct: 426 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 485 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K Sbjct: 486 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAK 545 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 546 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 605 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++AA + I+SI PEV ++Y+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 606 NDGEAMKAAIKWIKSIASDPEVGQVYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAVGRV 665 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ I Sbjct: 666 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDI 706 >gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisA53] gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisA53] Length = 721 Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/699 (62%), Positives = 547/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFHKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF ++NETQVI+ V+ H Sbjct: 61 VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P ++++VA SAAL LSG PF+GP+ A+V +IN +YVLNP LDE + LDL V+ Sbjct: 121 DMENDPDILALVATSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PV++AI +LA+ AKEP + D S Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPRDVKVIDESV 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+E+ +I++DLR + IP K R + K K+++++ E +++ I VF++ Sbjct: 241 LEKEILGLIEQDLRAAYAIPVKQDRYAAVGKAKDKVMAHYFPEGQEPQYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+DSLSGT + F++HYNF P + GE RMG RREIGHG+LA RA+HPVLP Sbjct: 361 EDEQYIDSLSGTYKEQFLLHYNFPPFSVGETGRMGGTKRREIGHGKLAWRALHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTDHGITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGE 699 >gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris HaA2] gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris HaA2] Length = 718 Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGET+VLATVV ++ ++G DF PLT Sbjct: 1 MFNKHSVEIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +++MVAASAAL LSG PF+GP+ A+V +IN +YVLNP LDE + L+L V+ Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI +LA+ AKEP + D S Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELVVIDDSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E+EM +++++LR + IP K R + +K+K +++F E +++ I VF++ Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQERYAAVGKVKEKAIAHFFPEGEEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+GT + F++HYNF P + GE R+G RREIGHG+LA RAI PVLP Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL++ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLASGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSM+VVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMRVVDQETGE 699 >gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium japonicum USDA 110] gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum USDA 110] Length = 720 Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF ++NETQVI V+ H Sbjct: 61 VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P +V++VA+SAAL LSG PF+GP+ A+V ++N +YVLNP LDE LDL V+ Sbjct: 121 DMENDPDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PVI AI +LA+ AKEP + D + Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVIDNAA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+EM +++++LR + IP K R + +K+K+++++ E +++ I VF++ Sbjct: 241 LEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ + F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S ++AA + I+SI PEV +IY G VVKVM+FGAFV+F G++DGLVHISQL++ RV Sbjct: 601 SDGEAMKAAIKWIKSIASEPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLASARV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699 >gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] Length = 714 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/699 (60%), Positives = 550/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV ++ K+G DF PLT Sbjct: 1 MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A G+IPGGY +RE RP+E E L+SR+IDR IRPLF K Y+ +TQVI+ + H Sbjct: 61 VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V+MVAASAAL LSG+PF GP+ A+V ++N +++LNP LDE LDL V+ Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+V+L A++FGH +PVI+AI LA+ AKEP I++ D S+ Sbjct: 181 GTADAVLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKEPREIETIDNSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E++M + + +LR + IP K R + +KKK++ +F E +++ I VF++ Sbjct: 241 IEKDMRAVGEAELRKAYAIPVKQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A VVR +LD +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEADVVRNNILDTGLRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G+P RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ I AA + I+SIT PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+ RV Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAANRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL DDRGK++LSMK V+Q TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVNQETGE 699 >gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130] gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130] Length = 709 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/697 (61%), Positives = 540/697 (77%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ HTVEIEW GRPL LE G++ARQ+DG+V+ TYGET V+ VV ++ K DFFPLT Sbjct: 3 MFEKHTVEIEWGGRPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY E+ YA GKIPGG+ +RE+RP+ENE L+ R+IDR IRPLF++ YKN+TQV V+ H Sbjct: 63 VNYIEKAYAAGKIPGGFFKREARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSH 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E++P +V+M+A SAAL +SG+PF GP+ GA+V I+G YVLNP +DE + LDL V+ Sbjct: 123 DMENNPDIVAMIATSAALTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESDLDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EAN LSE+V+L A++FGH E +PVI+A+ +LA+ CAKEP D SK Sbjct: 183 GTTDAVLMVESEANVLSEEVMLGAVMFGHEEFQPVIDAVIQLAEKCAKEPRPHTVPDNSK 242 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298 LE E+++++ + + + I +K R ID+ K F SE S+ E VF+ + Sbjct: 243 LEGEVTKLVGKAIEKAYTIADKQDRYAAIDEAKATAKDKFLSEESTDEEKTTFGGVFKQV 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 QA VVR ++ K R+DGRD +TVR I +QVG+L RTHGS+LF RG+TQAIVV TLGT + Sbjct: 303 QANVVRGSIIKTKKRIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGD 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ++D+L+GT + +F++HYNF P + GE R+G SRREIGHG+LA RA+ VLP Sbjct: 363 DEQFIDALTGTYKENFLLHYNFPPYSVGETGRIGFTSRREIGHGKLAWRAVKAVLPSKED 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+ PVAGIAMGL+K+GDDF +LSD Sbjct: 423 FPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGDDFAVLSD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT GIT++QMD+KI GI+E+IM +AL+QAK GR ILNEMSK Sbjct: 483 ILGDEDHLGDMDFKVAGTAEGITSLQMDIKITGITEDIMKIALEQAKGGRETILNEMSKA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+E R +LGEF PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS Sbjct: 543 LTEGRSELGEFAPRIESFKIPTDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I+AA + IRSITD PEV +IY+G VVK +DFGAFV+F GA+DGLVHISQL+ ERV Sbjct: 603 DGKAIDAALKWIRSITDDPEVGEIYQGTVVKTVDFGAFVNFFGAKDGLVHISQLADERVG 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 KT+DVV EGD VWVKL+ FDDRGK++LSMKVVDQ TG Sbjct: 663 KTTDVVNEGDKVWVKLMGFDDRGKVRLSMKVVDQETG 699 >gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 724 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/701 (61%), Positives = 541/701 (77%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV R K GQDFFPLT Sbjct: 1 MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+ YKN+TQV++ V+ H Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++ +YVLNP ++E + S LDL V+ Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+V+L A++FGH +PVIEAI +LA+ AKEP + D S Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVF 295 LE ++ ++ + DLR + I +K R + + K K+ YF E ++ V Sbjct: 241 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 300 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++AK+VR +LD +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG Sbjct: 301 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T EDEQ++DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+ +G+ F + Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK L+ +R +LGE PR+E+M I D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI Sbjct: 541 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS+S I+AA I+SI PEV IY G VVKV+DFGAFV+F G++DGLVHISQLS E Sbjct: 601 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+ Sbjct: 661 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGE 701 >gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB5] gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB5] Length = 722 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/699 (60%), Positives = 549/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPL+LETG++ARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFNKHSVEIDWGGRPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P ++++VA+SAAL LSG PF+GP+ A+V +IN +YVLNP LDE + LDL V+ Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI LA+ AKEP + D S Sbjct: 181 GTSDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKEPRELTVIDDSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM +++++LR + I K R + +K+K +++F E +++ I VF++ Sbjct: 241 IEKEMLGLVEQELRAAYAIAVKQERYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQYVDSL+GT + F++HYNF P + GE R+G RREIGHG+LA RAI PVLP Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ+TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQDTGE 699 >gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium caulinodans ORS 571] gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans ORS 571] Length = 756 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/701 (61%), Positives = 541/701 (77%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV R K GQDFFPLT Sbjct: 33 MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 92 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+ YKN+TQV++ V+ H Sbjct: 93 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 152 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++ +YVLNP ++E + S LDL V+ Sbjct: 153 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 212 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+V+L A++FGH +PVIEAI +LA+ AKEP + D S Sbjct: 213 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 272 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVF 295 LE ++ ++ + DLR + I +K R + + K K+ YF E ++ V Sbjct: 273 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 332 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++AK+VR +LD +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG Sbjct: 333 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 392 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T EDEQ++DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 393 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 452 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+ +G+ F + Sbjct: 453 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 512 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM Sbjct: 513 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 572 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK L+ +R +LGE PR+E+M I D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI Sbjct: 573 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 632 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS+S I+AA I+SI PEV IY G VVKV+DFGAFV+F G++DGLVHISQLS E Sbjct: 633 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 692 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+ Sbjct: 693 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGE 733 >gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4] gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4] Length = 710 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/698 (61%), Positives = 546/698 (78%), Gaps = 3/698 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VE++W GRPL LETG+IARQ+DGAV+ATYGET V+ATVV +S K GQDFFPLT Sbjct: 1 MFDIHRVEVDWGGRPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+ YKN+TQVI+ V+ H Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+ ++ SLDL V+ Sbjct: 121 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L ED +L A++FG +PVI+AI KLA+ AKEP + D S+ Sbjct: 181 GTSEAVLMVESEAKELDEDTMLGAVVFGQKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVS-VFED 297 L + + ++DL+ + I K R ID K K+V + + + E +V +F+ Sbjct: 241 LFGTIKGIAEDDLKAAYKITSKTERKNAIDAAKAKVVEAVIENGGDAAPEATVVGELFKK 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VR +LD R+DGRD TVR IS++VG+L R HGS+LF RG+TQ +VV TLGT Sbjct: 301 LEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ+VD L GT + FM+HYNF P + GE RMG+P RREIGHG+LA RA+HP+LP Sbjct: 361 EDEQFVDLLQGTMKEHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMLPAHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ PVAGIAMGL+K+GD F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGEMAN 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E+R +LGE PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 AITEARSELGEHAPRIEMLKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA I SI PEV IY+G VVK +DFGAFV+F GARDGLVHISQL+ ++V Sbjct: 601 SDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGARDGLVHISQLAPKKV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETG 698 >gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum SL003B-26A1] gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum SL003B-26A1] Length = 708 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/701 (61%), Positives = 545/701 (77%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VE+EW GRPL LETG++ARQ+DGAV+ATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFDIHRVEVEWGGRPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF++ YKN+TQVI+ V+ H Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E++P ++++VA+SAAL LSG+PF GPV GA+V YING+YVLNP +D+ + SLDL V+ Sbjct: 121 DMENAPDILALVASSAALTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESSLDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L EDV+L A++FGH+ + VI+AI KLA+ AKEP ++ D S Sbjct: 181 GTGDAVLMVESEAKELPEDVMLGAVMFGHSGFQTVIDAIIKLAETAAKEPRGLNLPDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFED 297 L + + EDL+ + I K R +D K K+V + V +F+ Sbjct: 241 LFARIKDIAAEDLKAAYTITGKTERRNAVDAAKTKVVEAVITNAGDAAPAATVVGDLFKK 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VR +++ R+DGRD +TVR I ++VG+L R HGS+LF RG+TQ +VV TLGT Sbjct: 301 LEAEIVRGAIIETGHRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ+VD+L GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAI+P+LP Sbjct: 361 EDEQFVDALEGTYKAHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAKH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ PVAGIAMGL+K+GD F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL+QA+ GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGITSLQMDIKIQGITEEIMKVALEQAREGRVHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E+R +LGE PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVKIAS Sbjct: 541 AITEARPELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+AA I SI PEV IY+G VVK ++FGAFV+F GA+DGLVHISQL+ +V Sbjct: 601 ADGKAIKAAINWINSIAAEPEVGMIYEGTVVKCVEFGAFVNFFGAKDGLVHISQLAPRKV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ+TGK I Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDTGKEI 701 >gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter winogradskyi Nb-255] gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255] Length = 718 Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/699 (60%), Positives = 550/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV +S ++G DF PLT Sbjct: 1 MFNQHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR +RPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P +++MVAASAAL LSG PF+GP+ A+V +IN +YVLNP LDE LDL V+ Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+++L A++FGH +PVI+AI +LA+ AKEP + D ++ Sbjct: 181 GTADAVLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKEPRELKVIDDTE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM ++++DLR + IP K R + +K+K +++F E +++ + VF++ Sbjct: 241 IEKEMLGLVEQDLRAAYAIPVKQDRYAAVGKVKEKALAHFFPEGQEPKYDKLRVAGVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD +TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+DSL+GT + F++HYNF P + GE R+G RREIGHG+LA RAI PVLP Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPYSVGETGRLGGAKRREIGHGKLAWRAIRPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G+ + +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R +LGE PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEG V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTSDVVKEGAKVKVKLLGFDDRGKTRLSMKVVDQETGE 699 >gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM 12614] gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM 12614] Length = 709 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/699 (61%), Positives = 543/699 (77%), Gaps = 10/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VE+EW GRPL LETG++ARQ+DGAV+A+YGET VLATVV +S K GQDFFPLT Sbjct: 1 MFDIHRVEVEWGGRPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+ YKN+TQV+I V+ H Sbjct: 61 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P +++MVA+SAAL LSG+PF GP+ GA+V YING+YVLNP +D+ + +LDL V+ Sbjct: 121 DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L ED++L A++FGH +PVI+AI KLA+ AKEP + D S+ Sbjct: 181 GTNDAVLMVESEAKELDEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV----- 294 L ++ M + DL + I K R ID K K+V + + EGE V Sbjct: 241 LFGKVKAMAESDLVAAYKITSKTDRKNAIDAAKAKVVEALITNAA---EGEAVESTILGE 297 Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F+ ++A++VR +LD R+DGRD TVR IS++VG+L R HGS+LF RG+TQ +VV T Sbjct: 298 QFKKLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVAT 357 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT EDEQY+D L GT ++ FM+HYNF P + GE RMG+P RREIGHG+LA RAI+P++ Sbjct: 358 LGTGEDEQYIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMM 417 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+KDGD F Sbjct: 418 PPHHEFPYTVRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRF 477 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM +AL QAK GR+HIL Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILG 537 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EMSK ++E+R +LGE PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTV Sbjct: 538 EMSKAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTV 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 KIAS+ I+AA I SI PEV IY+G VVK +DFGAFV+F GA+DGLVHISQL+ Sbjct: 598 KIASADGKAIKAAVNWINSIAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ++VAK +DV+KEGD VWVKL+ FD+RGK++LSMKVVDQ Sbjct: 658 PKKVAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQ 696 >gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. BTAi1] gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp. BTAi1] Length = 720 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/699 (60%), Positives = 543/699 (77%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV +S ++G DF PLT Sbjct: 1 MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF ++NETQVI+ + H Sbjct: 61 VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +++MVAASAAL LSG+PF+GP+ A+V + N +Y+LNP LDE LDL V+ Sbjct: 121 DMENDPDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PVI AI +LA+ AKEP + D S Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRDVAIIDNSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM + ++DLR + IP K R + +K+K+++YF E + + + VF++ Sbjct: 241 IEKEMLGIAEQDLRKAYAIPVKQERYAAVAAVKEKVMAYFFPEGQEPKYEKLRVADVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD +TVR+I +VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G + +LS Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S ++AA + I+SI PE+ +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV Sbjct: 601 SDGEAMKAAIKWIKSIASDPEIGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KT+DVVKEGD V VKLL FDDRGK +LSMK VDQ TG+ Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAVDQTTGE 699 >gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] Length = 718 Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/701 (61%), Positives = 545/701 (77%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H E++W GR L LETGR+ARQ+DGAVLATYG+T VLAT V ++ K GQDFFPLT Sbjct: 1 MFDIHREELDWGGRTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF++ YKN+TQV++ V+ H Sbjct: 61 VNYQEKAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P VVSMVAASAAL LSG+PF GP+ GA+V +I+ +YVLNP LDE + +LDL V+ Sbjct: 121 DLENDPDVVSMVAASAALTLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+E+V+L A++FGH +PVI+AI +LA+ AKEP + D S Sbjct: 181 GTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKEPREFAAPDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEK---YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VF 295 LE E+ +I+ DLR + I K Y K + ++E + E + +S V Sbjct: 241 LETELRGLIEADLRAAYKIARKQDRYAAVDAAKAKAKAHYAALAAEGQAVPEAQTLSEVL 300 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++++AK+VR +LD VR+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLG Sbjct: 301 KELEAKIVRWTILDDGVRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLG 360 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T EDEQ++DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 TGEDEQFIDSLEGTYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPILPP 420 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYTLR VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F + Sbjct: 421 AHEFPYTLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAV 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QAK GR HIL EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K L+ +R +LGE PR+E++ IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+ Sbjct: 541 AKALTGARAELGEHAPRIEVIQIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKV 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS+S I+AA I+SI PEV +IY+G VVKV+DFGAFV+F GA+DGLVH+SQL+ E Sbjct: 601 ASASGESIKAALNWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGAKDGLVHVSQLAKE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVAK SDVVKEGD V VKLL FD+RGK +LSMKVVDQ TG+ Sbjct: 661 RVAKPSDVVKEGDKVKVKLLGFDERGKTRLSMKVVDQATGE 701 >gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha carboxidovorans OM5] gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha carboxidovorans OM5] Length = 714 Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/699 (60%), Positives = 548/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV ++ K+G DF PLT Sbjct: 1 MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+ Y+ +TQVI+ + H Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P +V+MVAASAAL LSG+PF GPV A+V ++N +++LNP LDE LDL V+ Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA +L E+++L A++FGH +PV++AI +LA+ AKEP + + + Sbjct: 181 GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDVVATVNAD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+E+ ++++DLR + IP K R + K K++ +F E + + ++ VF+D Sbjct: 241 LEKEILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEGIEPRYEKLRVLDVFKD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+DSL+GT + F++HYNF P + GE R+G+P RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +GD F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ I AA + I+SIT PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+ RV Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAASRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KTSDVVKEGD V VKLL DDRGK++LSMK VDQ TG+ Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGE 699 >gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] Length = 712 Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/700 (60%), Positives = 547/700 (78%), Gaps = 2/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VE++W GRPL LETG++ARQ+DGAV+ATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFDIHRVEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGG+ +RE RP+E+E L SR+IDR IRPLF YKNETQV++ V+ H Sbjct: 61 VNYQEKAYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P VV+MV ASAAL +SG+PF GP+ GA+V YING+YVLNP +D+ ++ +LDL V+ Sbjct: 121 DLENAPDVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+V+L A++FGH +PVI+AI +LA+ AKEP ++ D S Sbjct: 181 GTNDAVLMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELNLPDHSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298 L ++ ++ E+L + I K R +D +K K+V + E ++S +F+ Sbjct: 241 LFGKVQELANEELGAAYSITAKTERKNAVDAVKAKVVEALVTGEEGAPEANVISDLFKKA 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A +VR +LD R+DGRD TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT E Sbjct: 301 EAAIVRGRILDTGSRIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGE 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ++D L GT++ FM+HYNF P + GE RMG+P RREIGHG+LA RA++P+LP Sbjct: 361 DEQFIDLLEGTKKATFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHD 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGL+K+G+ F +LSD Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLSD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+K Sbjct: 481 ILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E+R +LGE PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS Sbjct: 541 ITEARSELGEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I+AA I SI PEV IY+G VVK +DFGAFV+F GARDGLVHISQL+ +VA Sbjct: 601 DGKAIKAALNWINSIAAEPEVGVIYEGTVVKTVDFGAFVNFFGARDGLVHISQLAPRKVA 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K +DV+KEGD V+VKL+ FD+RGK++LSMKVVDQ TG+ I Sbjct: 661 KVTDVIKEGDKVFVKLMGFDERGKVRLSMKVVDQETGQEI 700 >gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] Length = 714 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/699 (60%), Positives = 545/699 (77%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H E++WAGR L LETGRIARQ+DGAVLATYGET VLATVV R+ K G DFFPLT Sbjct: 1 MFEIHREELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+N+TQV++ V+ H Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++++VA SAAL +SG+PF GPV GA+V YING LNP +DE + +LDL V+ Sbjct: 121 DLENDPDILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE ++L+A++ GH +PVI+AI +LA+ AKEP + D ++ Sbjct: 181 GTGDAVLMVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRELAVADKAE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297 +E + + + +LR + I K R K +D +K K+ E + +++ ++ F D Sbjct: 241 VEAAVRDIAEGELREAYKITAKQERYKAVDAVKAKVALALFPEDAEPRFSKEKVAEAFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LQAKVVRWNILDLGVRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ+VDSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP A Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAA 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+RIVSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+T++QMD+K+ GI+E IM +AL QAK GRLHIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGEF PR+E + IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 541 ALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA I+SI + PEV +IY+G VVKV+DFGAFV+F G++DGLVHISQL+ RV Sbjct: 601 SDGNSIKAAIAWIKSIANDPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK+SDVVKEG+ V VKLL FDDRGK++LSM+ VDQ TG+ Sbjct: 661 AKSSDVVKEGEKVKVKLLGFDDRGKVRLSMRYVDQETGE 699 >gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 715 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/699 (61%), Positives = 542/699 (77%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H EIEWAGR L LETG+IARQ+DGA+ ATYGET VLATVV +S+K G DFFPLT Sbjct: 3 MFEIHREEIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+NETQVI+ V+ H Sbjct: 63 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAH 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++SMVA+SAAL LSG+PF GPV A+V Y+NGQY +NP LDE +LDL V+ Sbjct: 123 DLENDPDILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSEDV+L A++ GH+ +PVI+AI +LA+ AKEP + D ++ Sbjct: 183 GTSDAVLMVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEPRDLILPDKTE 242 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E + + + DLR + I K R +D +K K+ + + + + + VF D Sbjct: 243 VEVAVLAIAENDLREAYKITSKQDRYAAVDAVKAKVFGDLLPAEGEAKFPKDLVAEVFHD 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 303 LQAKVVRWNILDNGIRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ +D+L GT R F++HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP A Sbjct: 363 EDEQLIDNLEGTYRERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMLPTPA 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ + +LS Sbjct: 423 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLS 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+K Sbjct: 483 DILGDEDHLGDMDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ +R +LGEF PR+E + IP ++IR VIG GGKVIR I E+TGAK+NI+DDGTVK+AS Sbjct: 543 AITGARAELGEFAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAKINIEDDGTVKVAS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA I+SI PEV IY G VVKV+DFGAFV+F G++DGLVHISQL+ RV Sbjct: 603 SDGNSIKAAINWIKSIATDPEVGHIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AKTSDVVKEGD V VKLL FDDRGK++LSM++VDQ TG+ Sbjct: 663 AKTSDVVKEGDKVKVKLLGFDDRGKVRLSMRLVDQETGE 701 >gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] Length = 717 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/699 (61%), Positives = 546/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF VH E++WAGR L LETG++ARQ+DGAV+A++GET VLATVV ++ K GQDFFPLT Sbjct: 1 MFQVHREELDWAGRKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF Y+ +TQVI+ V+ H Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P +++MVAASAAL LSG+PF GPV GA+V YINGQ LNP ++E + S LDL V+ Sbjct: 121 DLENDPDILAMVAASAALTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSE+ +L+A++ GH +PVI+AI +LA+ AK+P + D + Sbjct: 181 GTSDAVLMVESEAKELSEETMLEAVMTGHRGFQPVIDAIIRLAERAAKDPRDLIVPDLAH 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297 + E ++++ + DLR + K R +D +K K+++ E S ++ + ++ VF++ Sbjct: 241 VAEAVARIAEADLREAYKHTVKQERYAAVDAVKAKVMTELFPEGSEPAFTKEQVGEVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD +R+DGRD +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 LQAKVVRWNILDTGIRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ+VDSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP A Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ P AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QAK GRLHIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ SR +LGEF PR+E + IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 541 ALTTSRAELGEFAPRIETLKIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA I+SI PEV IY+G VVK DFGAFV+F GA+DGLVHISQLS +RV Sbjct: 601 SDGNSIKAAINWIKSIASDPEVGMIYEGTVVKTADFGAFVNFFGAKDGLVHISQLSKQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AKT+DVVKEGD V VKLL FDDRGK++LSM+ VDQ TG+ Sbjct: 661 AKTTDVVKEGDRVKVKLLGFDDRGKVRLSMRAVDQETGE 699 >gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11] gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11] Length = 711 Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/705 (60%), Positives = 547/705 (77%), Gaps = 10/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VE++W GRPL LETG++ARQ+DG+V+ATYGET VLATVV ++ + GQDFFPLT Sbjct: 2 MFDIHRVEVDWGGRPLILETGKVARQADGSVMATYGETKVLATVVSAKAPRAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+ YKN+TQV+I V+ H Sbjct: 62 VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+ + +LDL V+ Sbjct: 122 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESALDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+ +L A++FGH + VI+AI KLA+ AKEP + D S+ Sbjct: 182 GTSDAVLMVESEAKELDEETMLGAVMFGHKGFQTVIDAIIKLAEAGAKEPREFTAADHSE 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV----- 294 L ++ + +DL + I K R +D K K+V + + EGE V Sbjct: 242 LLGKVKAIAADDLAAAYKITAKTERKNAVDAAKAKVVEALITNAA---EGETVEANVLGE 298 Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F+ ++A++VR +LD R+DGRD TVR IS++VG+L R HGSSLF RG+TQ +VV T Sbjct: 299 QFKKLEAEIVRGGILDTGTRIDGRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVAT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT EDEQ++D L GT ++ FM+HYNF P + GE RMG+P RREIGHG+LA RAI+P+L Sbjct: 359 LGTGEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPML 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+K+G+ F Sbjct: 419 PAHHEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKEGERF 478 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL Sbjct: 479 AVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRIHILG 538 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM+ ++E+R +LGE PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTV Sbjct: 539 EMANAITEARSELGEHAPRIEMMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTV 598 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 KIASS I+AA I SI PEV IY+G VVK +DFGAFV+F GA+DGLVHISQL+ Sbjct: 599 KIASSDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++VAK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I Sbjct: 659 PKKVAKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 703 >gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 720 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/699 (59%), Positives = 549/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 1 MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+ ++NETQVI+ V+ H Sbjct: 61 VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P V++MVAASAAL LSG PF GP+ A+V ++N +YVLNP LDE L+L V+ Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSED++L A++FGH +PVI AI +LA+ AKEP + D S Sbjct: 181 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+EM +I+ +LR + I +K R + K K+++++ E +++ I +VF+ Sbjct: 241 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G+ RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G + +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 601 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+ Sbjct: 661 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGE 699 >gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter hamburgensis X14] gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis X14] Length = 748 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/699 (59%), Positives = 549/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV ++ ++G DF PLT Sbjct: 29 MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 88 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+ ++NETQVI+ V+ H Sbjct: 89 VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 148 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D+E+ P V++MVAASAAL LSG PF GP+ A+V ++N +YVLNP LDE L+L V+ Sbjct: 149 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 208 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSED++L A++FGH +PVI AI +LA+ AKEP + D S Sbjct: 209 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 268 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 LE+EM +I+ +LR + I +K R + K K+++++ E +++ I +VF+ Sbjct: 269 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 328 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 329 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 388 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G+ RREIGHG+LA RAIHPVLP Sbjct: 389 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 448 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G + +LS Sbjct: 449 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 508 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K Sbjct: 509 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 568 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS Sbjct: 569 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 628 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++AA + I+SI PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+ RV Sbjct: 629 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 688 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+ Sbjct: 689 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGE 727 >gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] Length = 714 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/699 (60%), Positives = 540/699 (77%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +H E++WAGR L LETG+IARQ+DGAV A++GET VLATVV ++ K GQDFFPLT Sbjct: 1 MFQIHREELDWAGRKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF Y+N+TQVI+ V+ H Sbjct: 61 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P +++MVAASAAL LSG+PF GPV A+V YINGQ LNP ++E + S LDL V+ Sbjct: 121 DLENDPDILAMVAASAALTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +LSEDV+L A++ GH +PVI+AI +LA+ AK+P ++ D S+ Sbjct: 181 GTSDAVLMVESEAQELSEDVMLGAVMTGHRGFQPVIDAIIRLAERAAKDPRDLNVADKSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 + ++ + + +LR + + K R +D +K K+ + E + +++ + F D Sbjct: 241 VTAAVAAIAEAELRTAYKLTVKQERYAAVDAVKAKVFAALLPEGGEAKFSKEHVAEAFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LQAKVVRWNILDDGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ+VDSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP A Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ KP AGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+T++QMD+KI GI+E IM +AL QA+ GRLHIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ SR +LGEF PR+E + I D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALTTSRAELGEFAPRIETLKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA I+SI PEV +IY+G VVK DFGAFV+F GA+DGLVHISQL+ +RV Sbjct: 601 SDANSIKAAINWIKSIASDPEVGQIYEGTVVKTADFGAFVNFFGAKDGLVHISQLAKQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KT+DVVKEGD V VKLL FDDRGK++LSM+VVDQ TG+ Sbjct: 661 NKTTDVVKEGDKVKVKLLGFDDRGKVRLSMRVVDQQTGE 699 >gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. ORS278] gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278] Length = 719 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/699 (60%), Positives = 546/699 (78%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV ++ +DG DF PLT Sbjct: 1 MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF ++NETQVI+ V+ H Sbjct: 61 VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V++VAASAAL LSG+PF+GP+ A+V + N +Y+LNP LDE LDL V+ Sbjct: 121 DMENDPDIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L+ED++L A++FGH +PVI AI +LA+ AK+P + D S Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPRDVAIIDNSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+EM + ++DLR + I K R + +K+K+++YF E +++ + +VF++ Sbjct: 241 IEKEMLGIAEQDLRKAYAIAIKQERYAAVGAVKEKVMAYFFPEGQEPKYDKLRVAAVFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR +LD R+DGRD++TVR+I +VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQY+D+LSGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G F +LS Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E I D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS Sbjct: 541 ALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S ++AA + I+SI PEV +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV Sbjct: 601 SDGEAMKAAIKWIKSIASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KT+DVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699 >gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis excentricus CB 48] gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis excentricus CB 48] Length = 760 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/700 (59%), Positives = 538/700 (76%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEWAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT Sbjct: 11 MFDIKRKTIEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 70 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+ H Sbjct: 71 VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSH 130 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P ++ MVAASAAL LSG+PF GP+ GA+V IN +YVLNP LD+ + +LDL V+ Sbjct: 131 DMENDPDILGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESALDLVVA 190 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDA++MVE EA +LSED +L A++F H +PVI+AI +LA+ AKEP +++DFS Sbjct: 191 GTQDALMMVESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDFSD 250 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIV-SVFE 296 + ++ ++ D+ + K+ R + + KKK + S E+ E I S F+ Sbjct: 251 VVAKIKDLVGPDIIAAYAHKGKHERHAAVGEAKKKAAAVLVKSEENPEGYEPAIFGSAFK 310 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +A V+R ++D R+DGR + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 311 ECEADVLRRDIIDHGKRVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGT 370 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 371 GEDEQFIDALEGTYKERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSA 430 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +PV+GIAMGL+ + D + +L Sbjct: 431 EEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYAVL 490 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM AL+QA GRLHIL EM+ Sbjct: 491 SDILGDEDHLGDMDFKVAGTELGITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMN 550 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K +S +R +LGEF P++E + I D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA Sbjct: 551 KAISGAREELGEFAPKIETIKIATDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 610 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +S ++I+AAR+ I+SI PE+ IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+ E+ Sbjct: 611 ASEQSKIDAARDWIKSIASEPEIGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQIKNEK 670 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAKTSDV+ EGD V VK L FDDRGK KLSMKVVDQ TG+ Sbjct: 671 VAKTSDVLSEGDEVKVKFLGFDDRGKTKLSMKVVDQETGE 710 >gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula bermudensis HTCC2503] gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula bermudensis HTCC2503] Length = 708 Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/699 (58%), Positives = 534/699 (76%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + EWAGRPL LETGRIARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFTITKKTTEWAGRPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF+ +KNE QV+ VM H Sbjct: 61 VNYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P VV+M+AASAAL +SG+PF GP+ A+V Y +G+Y++NP + +GS LDL ++ Sbjct: 121 DLENDPDVVAMIAASAALTISGIPFMGPIGAARVAYKDGEYLVNPTGADLEGSRLDLVMA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE EA++LSED++L A+I GH K +I+ I A+ CAKEP DFS Sbjct: 181 GTADAVMMVESEADELSEDIMLGAVIKGHAAAKEMIDHIISFAEQCAKEPWDYQPPDFSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297 + + + + L + +K R I + K+ + + ++ + + ++ + Sbjct: 241 QKPRVEEAARSGLAAAYQQTDKTQRVAAIGEAKQAAYDALTGDDAADPMDPAVVATLLKQ 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++++VR +++ + R+DGRD++TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 IESEIVRNAIIEGRPRIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTA 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ++D+L GT + +F++HYNF P + GE RMG+P RREIGHG+LA RA+ VLP Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRAVLPSQE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYVIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+T++QMD+K+ GI+E IM AL QAK GR+HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 LS SR +LGEF PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+N++DDGT+KIAS Sbjct: 541 ALSASRGELGEFAPRIETMKIPVDKIRDVIGSGGKVIREIVEKTGAKINVEDDGTIKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S ++I+AA + IR +TD PEV ++YKG+VVK +DFGAFV+F GARDGLVHISQL+ R Sbjct: 601 SEHSQIDAAVKWIRGLTDEPEVGEVYKGKVVKTVDFGAFVNFFGARDGLVHISQLNDGRP 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 KT+DVVKEGD V+VKLL FDDRGK++LSMKVVDQ TGK Sbjct: 661 EKTTDVVKEGDEVFVKLLGFDDRGKVRLSMKVVDQETGK 699 >gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 733 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/700 (60%), Positives = 533/700 (76%), Gaps = 2/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H VEI+W GR LKLETG ARQ+D AV+A YG+T VLATVV RS+K G DFFPLT Sbjct: 1 MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYA GKIPGGY +RE RP+E E L SR+IDR IRPLF + +KNETQV++ V+ H Sbjct: 61 VNYQERTYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P ++ MVAASAAL LSGLPF GP+ GA+V +NG+ VLNP +DE + S LDL V+ Sbjct: 121 DLENDPDILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE EA +L E +L+A++FGH +PVI+AI LA+ AKEP I D +K Sbjct: 181 GTADAVMMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPWDIKIPDKAK 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298 E+ ++ ++ L+ + EK R + + KK + S NE ++S F+ + Sbjct: 241 YAGEVKKLAEKTLKQAFSTKEKGKRQDLVAEAKKAISEGISIPADDPNEKVLLSDAFKAL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++R +L K+R+DGRD +TVR I ++V +L RTHGS+LF RG+TQA+VV TLGT E Sbjct: 301 EMDIMRGDVLKTKMRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGE 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ++DSL GT++ F++HYNF P + GEV RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 DEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQED 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ PVAGIAMGL+K+GD+F++LSD Sbjct: 421 FPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEFVVLSD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QA GR+HIL EM+K Sbjct: 481 ILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKS 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IV ++GAK++I+DDGTVKIAS+ Sbjct: 541 LTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAKIDIEDDGTVKIASA 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + IE A IR IT PEV +IYKG+VVKVM+FGAFV+F GA+DGLVHISQL+ R Sbjct: 601 NRESIEKALARIRGITSEPEVGQIYKGKVVKVMEFGAFVNFFGAKDGLVHISQLAPGRPE 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VVKEG V+VKLL FDDRGK +LSMK+VDQ TG+ I Sbjct: 661 SVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEI 700 >gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium radiotolerans JCM 2831] gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 739 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/701 (59%), Positives = 533/701 (76%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W R L LETG++ARQ+DGAV+ATYGET VLATVV + K G DF PLT Sbjct: 1 MFDVQREELMWGDRKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178 DLE+ P +V+MVAASAAL LSG+PF GP+ GA+V YING Y LNP + E ++ SLDL V Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 +GTQDAVLMVE EA +LSEDV+L A++FGH +PVIEAI +LA+ AKEP + + + Sbjct: 181 AGTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFKAPENA 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFED 297 +E+ + ++ + +LR + K R +D +K K+++ E + E V + F++ Sbjct: 241 DVEKAVLEVCEAELRAAYTKTVKQERYAAVDAVKAKVMAALCPEGAEKFPAEKVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q+KVVR +LD R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 AQSKVVRWNILDSGARIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI PVLP Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGVTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+NI+D G VKIAS Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDTGVVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+AA IRSI PEV IY G +VK M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 601 ADGKAIKAAYNWIRSIVAEPEVGVIYDGTIVKCMEFGAFVNFFGAKDGLVHISELAAQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AK DVVKEGD V VK L DDRGKI+LSMKVVDQ TG+ I Sbjct: 661 AKVQDVVKEGDKVKVKFLGQDDRGKIRLSMKVVDQQTGEDI 701 >gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter autotrophicus Py2] gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter autotrophicus Py2] Length = 730 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/701 (60%), Positives = 544/701 (77%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+H E++W GR L LETG++ARQ+DG+VLATYG+T VLATVV R K GQDFFPLT Sbjct: 1 MFDIHREELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + YK +TQV+I V+ H Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P VV+MVAASAAL LSG+PF GPV A+V +I+ +YVLNP +DE + +L+L V+ Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAVLMVE EA +L E+++L A++FGH +PVIEAI KLA+ AKEP D S+ Sbjct: 181 GTGDAVLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVS-VF 295 +E ++ ++ + DLR + I +K R + K K+ Y+ + + ++VS V Sbjct: 241 VESKVREIAEADLRAAYKIKQKQDRYAAVGAAKSKVKKYYEELALDGTKVPTAQVVSDVL 300 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++AK+VR +LD +R+DGRD TVR I ++VG+L R HGS+LF RG+TQA+VV TLG Sbjct: 301 KALEAKIVRWNILDDGIRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T EDEQ++DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYTLR+VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F + Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAV 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K L+ +R +LGE PR+E+M I D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI Sbjct: 541 AKALTTARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS+S I+AA I+SI PEV +IY+G VVKV+DFGAFV+F G++DGLVH+SQ++ E Sbjct: 601 ASASGDAIKAAINWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHVSQMANE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVAK SDVVKEGD V VKL+ FD+RGK +LSMKVVDQ TG+ Sbjct: 661 RVAKPSDVVKEGDKVKVKLMGFDERGKTRLSMKVVDQTTGE 701 >gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum lavamentivorans DS-1] gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum lavamentivorans DS-1] Length = 728 Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/702 (59%), Positives = 537/702 (76%), Gaps = 3/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + EIEW GR L LETG+IARQ+DGAVLATYG+T VLATVV +R K G DFFPLT Sbjct: 1 MFKITREEIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNETQVI V+ H Sbjct: 61 VNYQEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V+M+A SAAL +SGLPF GP+ A+V YI G+Y LNP +DE + +LDL V+ Sbjct: 121 DMENDPDIVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE EA +LSED++L A++FGH E +PVI+ I ++A+ CAKEP ID KD S+ Sbjct: 181 GTADAVMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L ++ ++ + D+R + + +K R + + K K+ S + + ++ +E ++ VF+ Sbjct: 241 LVAKVRELAESDVRAAYGLKDKGQRHEALAAAKDKVKSALCNPEDPNAVSETDVGGVFKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ VVR +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 IESDVVRNSILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ++D+L GT + +F++HYNF P + GE R+G RRE+GHG+LA RA+ VLP Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPFSVGETGRVGFTGRREVGHGKLAWRALRAVLPPKT 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+T++QMD+KI GI+E IM AL QAK GRLHIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R ++GE+ PR+E++ +P D+IR VIG GGKVIR IVE+TGAKV+I DDGT+K+AS Sbjct: 541 ALDTARPEMGEYAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAKVDISDDGTIKVAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A I+ I PEV KIY+G VVK +DFGAFV+F G RDGLVHISQ++ RV Sbjct: 601 SDGESIRKAIAWIQGIVAEPEVGKIYEGTVVKAVDFGAFVNFFGPRDGLVHISQMAPTRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 + SDVVKEGD V VKLL FDDRGK++LSMK V+Q TG+ IV Sbjct: 661 EQVSDVVKEGDKVKVKLLGFDDRGKVRLSMKHVNQETGEEIV 702 >gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC 21756] gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC 21756] Length = 712 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/700 (58%), Positives = 528/700 (75%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT Sbjct: 1 MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++ MVAASAAL LSG PF GP+ A+V +++G YVLNP LDE + +DL V+ Sbjct: 121 DLENDPDILGMVAASAALTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE E +LSE++VL + F H + + VI+AI LA+ AKEP + +D Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 ++ EM ++ D+ I +K R + I + KKK + + + ++ ++ ++F+ Sbjct: 241 IKAEMKGIVGADIAAGYKITKKQDRYEAIGNAKKKAIEALGKSDTNPAGYDPQKLAAIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++A VVR +LD +R+DGRD TVR I +VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKDGFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI+ IM AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R +G+F P++E + IP D+IR VIG GGKVIR IV TGAKV+I+DDG VK++ Sbjct: 541 KAMDAPREDVGDFAPKIETITIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGIVKVS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +S A+I+AA + I+SITD EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAK SDV+KEG V VKLL FDDRGK KLSMKVVDQ TG+ Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGE 700 >gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium nodulans ORS 2060] gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060] Length = 725 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/701 (59%), Positives = 529/701 (75%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV + K G DF PLT Sbjct: 1 MFDVQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P +VSMVAASAAL LSG+PF GP+ A+V Y+ QY LNP + E +GS LDL V+ Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L EDV+L A++FGH +PVIEAI +LA+ AKEP D S+ Sbjct: 181 GTEAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297 +E+ + ++ + DLR + K R +D +K K+++ + E + + + + F++ Sbjct: 241 VEKAVLEIGEADLREAYKKTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD R+DGRD TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+HP+LP Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G +KIAS Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVIKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G VVK M+FGAF++F GA+DGLVHIS+L+ +RV Sbjct: 601 SDAKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHISELAPQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AK +DVVKEGD V VK L D+RGKI+LSMKVVDQ TG+ I Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDI 701 >gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp. 4-46] gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp. 4-46] Length = 725 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/699 (59%), Positives = 528/699 (75%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV + K G DF PLT Sbjct: 1 MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +VSMVAASAAL LSG+PF GP+ A+V Y+ GQY LNP + E ++ SLDL V+ Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA +L EDV+L A++FGH +PVIEAI +LA+ AKEP D ++ Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLTE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297 +E+ + ++ + DLR + K R +D +K K+++ E + + ++ + F++ Sbjct: 241 VEKAVLEIGEADLREAYRKTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +QAKVVR +LD R+DGRD TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+HP+LP Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPPAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ + +LS Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G VKIAS Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G VVK M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFVNFFGAKDGLVHISELAPQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK +DVVKEGD V VK L D+RGKI+LSMKVVDQ TG+ Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGE 699 >gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi BJ001] gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi BJ001] Length = 745 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/701 (59%), Positives = 530/701 (75%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W R L LETG+ ARQ+DGAV+ATYGET VLATVV + K G DF PLT Sbjct: 1 MFDVQREELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +VSMVAASAAL LSG+PF GP+ A+V Y+NG Y LNP + E + +LDL V+ Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +LSEDV+L A++FGH +PVIEAI +LA+ AKEP + + Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFSPPENAD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E+ + + + +LR + I K R K +D +K K+V+ + ++ ++ + F++ Sbjct: 241 VEKAVLDICESELRDAYKITVKQDRYKAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q+KVVR +LD R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI PVLP Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR HIL EM++ Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGVVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAPQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AK DVVKEG V VK L D+RGKI+LSMKVVDQ TG+ I Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 701 >gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii ATCC 17100] gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii ATCC 17100] Length = 709 Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/701 (58%), Positives = 540/701 (77%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ E+EW GR L LETGRIARQ+DGAVLA YGET VLATVV +R +DFFPLT Sbjct: 1 MFDIFREEVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE RPTE E L+SR+IDR IRPLF+ +KNETQVI+ V+ H Sbjct: 61 VNYQEKAYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D+E+ P +V+MVAASAAL +SGLPF GP+ ++V Y G+Y+LNP D+ + S LDL V+ Sbjct: 121 DMENDPDIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238 GT DAVLMVE EA +LSED++L A++FG KPVI+AI LA+ AKEP I D+K+ Sbjct: 181 GTVDAVLMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEPWTIPDAKN-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297 + E ++ +++++DL+ + I K R ++ + K K ++ F S+E ++ + ++ F++ Sbjct: 239 EFESKVKKLVEKDLKKAFQIAGKQERQTKVAEAKAKAIAEFVSAESTAGEKNKVAEAFKE 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+ VVRT +L R+DGRD +TVR I +QVG++ RTHGSSLF RG+TQA+VV TLGT Sbjct: 299 IEKHVVRTSILKTGKRIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTG 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+HP++P++ Sbjct: 359 EDEQWIDSLEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPKSD 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI PVAGIAMGL+K+ + +LS Sbjct: 419 TFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVAVLS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+ IM +AL+QA GRLHIL EMSK Sbjct: 479 DIIGDEDHLGDMDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMSK 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IVE++GAK++I DDGTVKIA+ Sbjct: 539 ALNAARGELGEFAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAKIDISDDGTVKIAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++L+ I+ A I+SI PEV IYKG+VVK+++FGAFV+F G+RDGLVHISQ++ R+ Sbjct: 599 ANLSSIQDAINRIKSIASEPEVGVIYKGKVVKIVEFGAFVNFFGSRDGLVHISQMAERRL 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 S+VVK+G V+VK L FD+RGK++L+MK +DQ GK + Sbjct: 659 KHASEVVKDGQEVYVKCLGFDERGKVRLTMKGIDQTDGKEV 699 >gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] Length = 748 Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W R L LETG+ ARQ+DG+V+ATYGET VLATVV + K G DF PLT Sbjct: 1 MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+MVAASAAL LSG+PF GP+ A+V Y+NG Y LNP + E + +LDL V+ Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +LSEDV+L A++FGH +PVIEAI +LA+ AKEP + + Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E + + + +LR + K R +D +K K+V+ + ++ ++ + F++ Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q+KVVR +LD R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI PVLP Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK DVVKEG V VK L D+RGKI+LSMKVVDQ TG+ Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 699 >gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium chloromethanicum CM4] gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium chloromethanicum CM4] gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] Length = 745 Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W R L LETG+ ARQ+DG+V+ATYGET VLATVV + K G DF PLT Sbjct: 1 MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+MVAASAAL LSG+PF GP+ A+V Y+NG Y LNP + E + +LDL V+ Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +LSEDV+L A++FGH +PVIEAI +LA+ AKEP + + Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E + + + +LR + K R +D +K K+V+ + ++ ++ + F++ Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q+KVVR +LD R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI PVLP Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK DVVKEG V VK L D+RGKI+LSMKVVDQ TG+ Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 699 >gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens PA1] gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium extorquens PA1] Length = 752 Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV E+ W R L LETG+ ARQ+DG+V+ATYGET VLATVV + K G DF PLT Sbjct: 8 MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 67 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H Sbjct: 68 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 127 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+MVAASAAL LSG+PF GP+ A+V Y+NG Y LNP + E + +LDL V+ Sbjct: 128 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 187 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAVLMVE EA +LSEDV+L A++FGH +PVIEAI +LA+ AKEP + + Sbjct: 188 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 247 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297 +E + + + +LR + K R +D +K K+V+ + ++ ++ + F++ Sbjct: 248 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 307 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q+KVVR +LD R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 308 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 367 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 EDEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI PVLP Sbjct: 368 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 427 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS Sbjct: 428 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 487 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK Sbjct: 488 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 547 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS Sbjct: 548 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+AA IRSI PE IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV Sbjct: 608 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 667 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK DVVKEG V VK L D+RGKI+LSMKVVDQ TG+ Sbjct: 668 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 706 >gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis biprosthecum C19] gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis biprosthecum C19] Length = 749 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/701 (58%), Positives = 536/701 (76%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ I+WAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT Sbjct: 1 MFDIKRKSIDWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV+ V+ H Sbjct: 61 VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V+MVAASAAL LSG+PF GP+ GA+V I+G++VLNP D+ + +LDL V+ Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKESTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DA++MVE EA +LSED +L A++F H +PVIEAI ++A+ AKEP +++DFS Sbjct: 181 GTTDALMMVESEAKELSEDKMLAALMFAHRGMQPVIEAIIEMAEHAAKEPFDFEAEDFSG 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHS--SWNEGEIVSVFE 296 + + ++ +D+R + I K+ R + K K ++ +E + + + + F+ Sbjct: 241 IVTSIKGLVGQDIRDAYTITGKHDRHAAVGAAKSKAGLALLKTEANPDGVDAAKFGAAFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +A V+R +++ R+DGR + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 ECEADVLRRDIIEHGKRVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQY+D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 GDDEQYIDALDGTYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTV 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ PV+GIAMGL+ + ++ I Sbjct: 421 EEFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPSGEYAI 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT +GIT++QMD+K+ GI+E IM AL+QA GRLHIL EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGTVNGITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K +S +R +LGEF P++E + I D+IR VIG GGKVIR IVE+TGAK++I DDGT+KI Sbjct: 541 NKAISGAREELGEFAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIQDDGTIKI 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 ++S ++I+AAR+ ++SI PEV IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+S E Sbjct: 601 SASEQSKIDAARDWVKSIASEPEVGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQISKE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 +V K SDV+ EGD V VK L FDDRGK KLSMKV+DQ TG+ Sbjct: 661 KVGKVSDVLNEGDEVKVKFLGFDDRGKTKLSMKVIDQETGE 701 >gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 764 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/701 (58%), Positives = 533/701 (76%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ I+WAGRPL LETGRIARQ+DGAVLATYGET+VLATVVY R+ K G DFFPLT Sbjct: 17 MFDIKRKTIDWAGRPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGLDFFPLT 76 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGGY +RE RPTE E L+SR+IDR IRPLF K +KNETQV+I V+QH Sbjct: 77 VNYQEKTFAAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 136 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P +V MVA SAAL LSG+PF GP+ A+V YI+G++VLNP LD+ S LDL V+ Sbjct: 137 DLENDPDIVGMVATSAALTLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPDSQLDLVVA 196 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DA++MVE EA +LSE V+LDA++F H +PVI+AI ++A+ AK+P ++D S Sbjct: 197 GTSDALMMVESEAKELSEQVMLDALMFAHRGMQPVIDAIIEMAEHAAKDPFDFQAEDHSG 256 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296 + ++ ++ ED++ + P K+ R + + KKK + + + + ++ Sbjct: 257 VVTQIQSLVGEDIKAAYTHPGKHARHEAVGAAKKKASAALVKTDENPDGVDSAKFGVAWK 316 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +A V+R ++D R+DGR + VRDI ++VG+ RTHGS+LF RG+TQAIVV TLGT Sbjct: 317 ECEAHVLRRDIIDNAHRVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGT 376 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQYVDSL+GT + F++HYNF P + GE RMG RREIGHG+LA RAI P+LP + Sbjct: 377 GEDEQYVDSLAGTYKEKFLLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRAIRPMLPTS 436 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVP+ KPV+GIAMGL+ + +F I Sbjct: 437 EEFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPSGEFAI 496 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT GIT++QMD+K+ GI+E IM A+ QA GRLHIL+EM Sbjct: 497 LSDILGDEDHLGDMDFKVAGTRDGITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEM 556 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 K + +R +LGE+ P++E + +P D+IR++IG GGK+IR IVE+TGAK+NI+DDGTVKI Sbjct: 557 DKAIDGARTELGEYAPKIESIKVPVDKIRDIIGTGGKIIREIVEKTGAKINIEDDGTVKI 616 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+S +I+AA+ I SI PE IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E Sbjct: 617 AASDQEKIDAAKNWISSIVSEPEPGMIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 676 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVA +DV+ EG V VK L FDDRGK KLSMKVVDQ+TG+ Sbjct: 677 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQSTGE 717 >gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3] gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3] Length = 745 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/701 (58%), Positives = 528/701 (75%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEWAGRPL LETGRIARQ+DGAVLATYGETVVLATVVY RS K G DFFPLT Sbjct: 1 MFDIKRKTIEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNETQV+I V+QH Sbjct: 61 VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D+E+ P V+ MVAASAAL +SG+PF GP+ A+V I+G+ VLNP +D+ GS LDL V+ Sbjct: 121 DMENDPDVLGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDA++MVE EA +LSE+ +L+A++F H +PVI+AI LA+ AKEP ++D S Sbjct: 181 GTQDALMMVESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAKEPFDFQAEDHSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 + + +++ ED++ + P KY R +D KK + + + + F+ Sbjct: 241 VVTSIKKLVGEDIKAAYTHPGKYDRRSGVDAAKKTAAAALVKTDENPEGVDSSKFAAAFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +A V+R +++ R+DGR + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 ECEADVLRRDIIENAHRVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQY+DSL GT + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP Sbjct: 361 GEDEQYIDSLQGTYKESFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PV+GIAMGL+ + +F I Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFAI 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT GIT++QMD+K+ GI++ IM AL QA GRLHIL+EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK + R +LGE P++E + I D+IR VIG GGKVIR IVE+TGAK++I DDGT+K+ Sbjct: 541 SKAMDAPRAELGEHAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIGDDGTIKV 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A++ +I+AA+ I+SI PEV IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E Sbjct: 601 AANDQEKIDAAKAWIQSIASEPEVGTIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVA +DV+ EG V VK L FDDRGK KLSMKVVDQ TG+ Sbjct: 661 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQTTGE 701 >gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus CB15] gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus NA1000] gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus CB15] gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase [Caulobacter crescentus NA1000] Length = 712 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/700 (58%), Positives = 532/700 (76%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT Sbjct: 1 MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH Sbjct: 61 VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P ++ MVAASAAL LSG PF GP+ A+V +++G YVLNP LDE + +DL V+ Sbjct: 121 DLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE E +LSE++VL + F H + + VI+AI LA+ AKEP + +D Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEH-SSWNEGEIVSVFE 296 ++ +M ++ D+ + I +K R + + KKK ++ S E+ + ++ ++ ++F+ Sbjct: 241 IKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++A VVR +LD +R+DGRD +TVR I +VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI+ IM AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R +G+F P++E + IP D+IR VIG GGKVIR IV TGAKV+I+DDG VK++ Sbjct: 541 KAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +S A+I+AA + I+SITD EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAK SDV+KEG V VKLL FDDRGK KLSMKVVDQ TG+ Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGE 700 >gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] Length = 715 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/700 (57%), Positives = 524/700 (74%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEW G+ L LETGR+ARQ+DGAVLATYGET+VLAT V+ +S K GQDFFPLT Sbjct: 1 MFDIKRKTIEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPG + RRE P++ E L SR+IDR IRPLF K +KNE QVI V+ H Sbjct: 61 VNYQEKFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+MVAASAAL+LSG+PF GP+ A+V Y+NG+YVLNP LDE + ++DL V+ Sbjct: 121 DLENDPDIVAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AV+MVE E +L+E+ VL + F H +PVI+AI +LA+ AKEP D + Sbjct: 181 GTAEAVMMVESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAKEPFDFQPDDTDE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296 + ++ +I DLR + I K R I K+K ++ F+ ++ ++ ++ VF+ Sbjct: 241 IAAKVKDLIGGDLRAAYQITGKSERHAAIGAAKEKAMTAFAKSEANPEGYDANKLGGVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+A +VR +L+ R+DGR + VR I +VG+L R HGS+LF RG+TQA+ V TLGT Sbjct: 301 EIEADIVRRSILETGKRIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ +D+L G FM+HYNF P + GE RMG+P RRE+GHG+LA RA+ P+LP Sbjct: 361 GDDEQLIDALEGKYFEKFMLHYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPSY 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+RIVSEI ES+GSSSMATVCGSSLALMDAGVP+ KPV+GIAMGL+ + D F +L Sbjct: 421 EEFPYTIRIVSEIFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKDGFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT GIT++QMD+KI GI+E IM AL+QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++ R +LGEF P++E + IP D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA Sbjct: 541 KAMTAPRAELGEFAPKIETIKIPVDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ +I+AA+E I+SI PEV +IY G+VVK++DFGAFV+F GA+DGLVH+SQ+S ER Sbjct: 601 AAEQTKIDAAKEWIKSIASEPEVGQIYTGKVVKIVDFGAFVNFFGAKDGLVHVSQISNER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAK SDV+ EG V VKLL FDDRGK +LSMKVVDQ TG+ Sbjct: 661 VAKVSDVLTEGQQVKVKLLGFDDRGKTRLSMKVVDQETGE 700 >gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum SW] gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum centenum SW] Length = 707 Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/699 (57%), Positives = 531/699 (75%), Gaps = 5/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V E+ W GR L LETG++ARQ+DGAV A+YG+TVVLAT V ++ K G DFFPLT Sbjct: 1 MFKVFRKEMMWGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RPTE E+L SR+IDR IRPLF+ Y+NETQVI+ V+ H Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE+ P +V+MVA SAAL +SG+PF GP+ A+V Y +GQ+VLNP L++ + S LDL V+ Sbjct: 121 DLENDPDIVAMVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA +L EDV+L A++FGH E +PVI+ I LA+M AK+P+ I + + K Sbjct: 181 GTTEGVLMVESEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAKDPMAIPAPAYDK 240 Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++ M+ +I +D+R + + K R I K K + +E ++ + SVF++ Sbjct: 241 DAVKTRMAALIGQDVRQAYTLTVKQERYAAIGAAKLKALETMVAEGTAPEA--VASVFKE 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +++ ++R +++ R+DGR + +R I +QVG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 299 LESDILRGSVIETGKRIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTN 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ VD+L G R FM+HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 359 QDEQIVDALEGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPLLPTKE 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMATVCGSSL++MDAGVP+ +PVAGIAMGL+K+G+ F +LS Sbjct: 419 TFPYTIRVVSEITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAVLS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI I+E IM +AL QAK GR+HIL+EM+K Sbjct: 479 DILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNK 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R + + PR+ ++ IP D+IR+VIG GGKVIR IVEQTGAK++I+DDGTVK+A+ Sbjct: 539 ALNTAREAVNQNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 EAA + I+ I PEV +IY+G+VVK+MDFGAFV+F G+RDGLVHIS+L ERV Sbjct: 599 VDGKASEAAIKWIKGIVAEPEVGEIYEGKVVKIMDFGAFVNFLGSRDGLVHISELKNERV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 AK +DVVK+GD V VK+L FDDRGK+KLSMKVVDQ TG+ Sbjct: 659 AKVTDVVKQGDAVKVKVLGFDDRGKVKLSMKVVDQTTGE 697 >gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum JF-5] gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum AIU301] gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum JF-5] gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum AIU301] Length = 717 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/702 (57%), Positives = 537/702 (76%), Gaps = 6/702 (0%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MFD + E++W GR L LETG++ARQ+DGAV+A+YG+TVVLATVV RS+K GQDFFPL Sbjct: 2 MFDKYFRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPL 61 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQE+ YA G+IPGG+ +RE RPTE E L SR+IDR IRPLF ++NE QVI+NV+ Sbjct: 62 TVNYQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLS 121 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 HDLE+ P +VS+VAASAAL LSG+PF GPV A++ YI+G+Y+LNP + + LDL + Sbjct: 122 HDLENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVL 181 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKD 236 +GT++ VLMVE EA++LSE+ +L A+ FGH +PVI+AI +LA+ AK+P +V +S + Sbjct: 182 AGTEEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDE 241 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L + ++ +E LR + EK R ++I +K ++ ++E S + + +F+ Sbjct: 242 EKALAARVDELAREGLRAAYAEREKTARHEKIGAVKAAVLETLAAEERSVEKAK--GMFK 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++A +VR +LD +R+DGRD+ TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 300 ELEADIVRNAILDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ VD++ G R F++HYNF P + GE R+G+P RRE+GHG+LA RAIHP+LP Sbjct: 360 AQDEQIVDAIEGEYRERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPGK 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ F +L Sbjct: 420 DKFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++G+T++QMD+KI I+ IM +AL QAK GRLHIL EMS Sbjct: 480 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMS 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R + PR+ ++ +P D+IR+VIG GGKVIR IVE +G K++I+DDGT+KIA Sbjct: 540 KALTGAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCKIDIEDDGTIKIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++S + + A + IRS+T PEV +IY G+VVK+ DFGAFV+F GARDGLVHIS+L+ R Sbjct: 600 ATSDEQAQKAIDRIRSLTSEPEVGQIYTGKVVKIADFGAFVNFFGARDGLVHISELAQGR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VA+T DVVK GDTV VK++ DDRGK+KLSM+VVDQ TG I Sbjct: 660 VARTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVVDQATGADI 701 >gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC 49814] gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC 49814] Length = 709 Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/702 (59%), Positives = 527/702 (75%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ V I+WAGRPL LETGRIARQ+DGAVLATYGET VLATVV + DFFPLT Sbjct: 1 MFDIQKVTIDWAGRPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGG+ +RE+RPTE E L SR+IDR IRPLF +KNETQV++ V+ + Sbjct: 61 VNYQEKYYAAGRIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P VV+MVAASAAL +SG+PF GP+ A+V Y +G+Y++NP LD+ LDL V+ Sbjct: 121 DMENDPDVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAV+MVE EA +LSE+V+L A++ GH + VI+ I LA+ AKEP +D S Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHESFQTVIDGIIDLAERSAKEPWDFQPEDKSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEH-SSWNEGEIVSVFE 296 ++ +++ D+ + I EK R + + ++K + S E+ W+E +F+ Sbjct: 241 ELAKLEELVGADISAAYKIKEKAERYAAVGEAREKAAAQLVVSEENPEGWSEAFFKGIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++AKVVR ++ VR+DGR + VR I +V +L RTHGS+LF RG+TQAI V TLGT Sbjct: 301 SLEAKVVRGDIIKTGVRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ++D L GT +++FM+HYNF P + GEV RMG RREIGHG+LA RA+ VLP Sbjct: 361 GEDEQFIDGLEGTSKSNFMLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRALKAVLPSN 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVPI++PV+GIAMGL+KD D +L Sbjct: 421 EDFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDEDGIAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI++ IM AL+QAK GR HIL+EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGLTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L SR + PR+ M+IP D+IR+VIG GGKVIR IVE+TGAKV+++DDGTVKIA Sbjct: 541 KALDGSRDDVSGNAPRIVTMSIPTDKIRDVIGTGGKVIRQIVEETGAKVSVEDDGTVKIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+AA + I +T PEV +IY+G+VVKVMDFGAFV+F GA+DGLVHISQL+ ER Sbjct: 601 AVDKESIDAAYKWIHGLTAEPEVGEIYEGKVVKVMDFGAFVNFFGAKDGLVHISQLAEER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V +TSDVVKEG TVWVKLL FDDRGK++LSMKVVDQ TGK I Sbjct: 661 VKQTSDVVKEGQTVWVKLLGFDDRGKVRLSMKVVDQETGKEI 702 >gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10] gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10] Length = 710 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/702 (57%), Positives = 516/702 (73%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ IEWAGRPL +ETGR+ARQ+DGAV+ +YGET VLAT V + K G DFFPLT Sbjct: 1 MFDIQKETIEWAGRPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RPT+ E L SR+IDR IRPLF K +KNE QV++ V+ H Sbjct: 61 VNYQEKYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V M+ ASAAL+LSGLPF GP+ A+V Y +G+YV+NP DE D LDL V+ Sbjct: 121 DLENDPDIVGMIGASAALVLSGLPFMGPIGAARVGYKDGEYVINPPCDEMDDSELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQDAV+MVE EA +LSE+V+L A++ GH +PVI+ I KLA+ AKEP D S Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHKAFQPVIDMIIKLAERAAKEPWDYAPADHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFE 296 E ++ +I +DL + I +K R K + K K V + ++ + V + Sbjct: 241 EEAKVRDLIGDDLAAAYTIVDKTERYKAVGAAKDKAVEALLQTEERPDGIDMTTLKDVMK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++ +VR ++ R+DGR + VR I ++ G+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 AVESSIVRGGIIKTGKRIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ++D+L+GT + FM+HYNF P + GE S AP RREIGHG+LA RA+ VLP Sbjct: 361 GEDEQFIDALTGTYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAVKAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCG+SL++MDAGVPI++PV+GIAMGL+KD + +L Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLSMMDAGVPITRPVSGIAMGLIKDPEGIAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI E IM AL QA GRLHIL EM Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGVTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEEMG 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L E+R +LGEF PR+E + IP D+IR+VIG GGKVIR IVE TGAKV+++DDG +K++ Sbjct: 541 KALGEARTELGEFAPRIETITIPTDKIRDVIGSGGKVIREIVETTGAKVDVNDDGVIKVS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+AA + I +T PE +IYKG+VVKVMDFGAFV+F G +DGLVH+SQL ER Sbjct: 601 SSDGASIKAALDWIHGLTAEPEEGQIYKGKVVKVMDFGAFVNFFGPKDGLVHVSQLKAER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V SDVVKEG V+VKLL FDDRGK++LSMK++DQ TG+ I Sbjct: 661 VNHPSDVVKEGQEVYVKLLGFDDRGKVRLSMKIIDQETGEEI 702 >gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31] gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31] Length = 716 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/700 (57%), Positives = 523/700 (74%), Gaps = 4/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ + K GQDFFPLT Sbjct: 1 MFEIMRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY E+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV+ V+QH Sbjct: 61 VNYIEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+M AASAAL++SG PF GP+ G +V Y+N +Y+LNP LDE + +DL V+ Sbjct: 121 DLENDPDIVAMCAASAALVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE E +LSE++VL + F H + VI I +LA+ AKEP +D Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPEDTDA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296 L+ E+ + + DL + I K R + K K V F+ + + + +++SVF+ Sbjct: 241 LKAEVKKAVGADLADAYTIRAKGDRHAALSAAKSKAVDTFAKSDANPAGIDPLKLISVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++A +VR +LD +R+DGR +TVR I +VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 ELEADIVRRSILDTGIRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ++D+L GT + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP Sbjct: 361 GDDEQFIDALEGTYKEAFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALRPMLPAK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCG+SLA+MDAGVP+ +PV+GIAMGL+ + D F +L Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEKDGFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+T++QMD+KI GI+E IM AL QAK GR HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQAKGGREHILGEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R ++G++ P++E + IP D+IR VIG GGKVIR IV TGAKV+I+D+GTVK++ Sbjct: 541 KAMDAPREEVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGAKVDINDEGTVKVS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +S A+I+AA + I+SIT EV IY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER Sbjct: 601 ASDGAKIKAAIDWIKSITQEAEVGAIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VAK SDV+KEG V VKLL FDDRGK KLSMKVVDQ TG+ Sbjct: 661 VAKPSDVLKEGQIVKVKLLGFDDRGKTKLSMKVVDQETGE 700 >gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp. SXCC-1] Length = 761 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/706 (57%), Positives = 520/706 (73%), Gaps = 17/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V +S+K GQDFFPLT Sbjct: 50 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 109 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+ V+ H Sbjct: 110 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 169 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P VV+++ SAAL LSG+PF GPV A+V Y NG+YVLNP + + + LDL V+ Sbjct: 170 DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA 229 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA +LSEDV+L A+ FGH +PVI+ I LA+ AK P D ++ Sbjct: 230 GTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAAKAPW-----DLAE 284 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKY------VRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 EE+ K D I E Y VR K++ ++ +++ + + Sbjct: 285 PTAEEIKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIGEADADAAK---- 340 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + +D++A VVRT +LD R+DGRD ET+R I ++VG+L R HGS+LF RG+TQA+VV Sbjct: 341 PMIKDLEADVVRTEVLDTGYRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVA 400 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ VD+L G RN+FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+ Sbjct: 401 TLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPL 460 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ DD Sbjct: 461 LPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEDD 520 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +LSDI GDEDHLG MDFKVAGT+ G+TA+QMD+KI I+ IM +AL QA++GRLHIL Sbjct: 521 FAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHIL 580 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K L+E R + P++ +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT Sbjct: 581 GEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGT 640 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + IA+SS + E A E IR IT PEV IY G+VVK DFGAFV+F G RDGLVHIS+L Sbjct: 641 IMIAASSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISEL 700 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + RV+KT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG I Sbjct: 701 AEGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQKTGADI 746 >gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 709 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/696 (56%), Positives = 519/696 (74%), Gaps = 4/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ T IEWAGR L LETGR+ARQ++GAVLATYGET VLAT V + +K G DFFPLT Sbjct: 1 MFDIQTETIEWAGRTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGGY +RE RPT+ E L SR+IDR IRPLF K +KN+TQV+I V+ H Sbjct: 61 VNYQEKYFAAGKIPGGYFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P VV M+ ASAAL LSGLPF GP+ A+V Y +G+Y++NP + E D LDL V+ Sbjct: 121 DLENDPDVVGMIGASAALCLSGLPFLGPIGAARVGYKDGEYIINPTVAEMDDTELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE EA +LSE+ +L A++ GH +PVI+ I +LA+ AK+P + +D S Sbjct: 181 GTSDAVMMVESEAKELSEETMLGAVMAGHEAFQPVIDMIIRLAEKAAKDPWEFEPEDHSD 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV---SVFE 296 LE ++ ++ +++ + I K R + K+K V+ ++ + + ++V V + Sbjct: 241 LEAKVKALVGDEIAKAYTITNKTERQAAVSAAKEKAVAELAATEENPDGADMVVLKDVLK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++A VVR ++ R+DGR + VR I ++ +L RTHGS+LF RG+TQA+ VVTLGT Sbjct: 301 GVEASVVRGGIIKTGKRIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ++D+L+GT + F++HYNF P + GE S AP RREIGHG+LA RA++ V+P Sbjct: 361 GEDEQFIDALTGTYKERFLLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRALNAVMPNA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVPI++PV+GIAMGL+KD + +L Sbjct: 421 ETFPYTVRLVSEITESNGSSSMATVCGGSLALMDAGVPITRPVSGIAMGLIKDPEGVAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+++IM AL QAK GR+HIL EM+ Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEEMN 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K LS +R L E P++E + IP D+IR+VIG GGKVIR IVE+TGAKV+++D+G +K++ Sbjct: 541 KALSGTREALNEHAPKIETIQIPTDKIRDVIGSGGKVIRQIVEETGAKVDVNDEGLIKVS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S S I+AA + I+ +T PEV +IYKG+VVKV+DFGAFV+F G RDGLVH+SQ+ ER Sbjct: 601 SVSADSIKAALDWIKGLTAEPEVGEIYKGKVVKVVDFGAFVNFFGPRDGLVHVSQMKNER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V DVV EG VWVKLL FDDRGK++LSMKVVDQ Sbjct: 661 VGHPKDVVSEGQEVWVKLLGFDDRGKVRLSMKVVDQ 696 >gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] Length = 735 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/702 (56%), Positives = 532/702 (75%), Gaps = 8/702 (1%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MFD + +I W G+ L LETG++ARQ+DGAV+A G+T+VL TVV RS+K GQDFFPL Sbjct: 1 MFDNYFRKDIAWGGKTLTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKPGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQE+ +A GKIPGG+ +RE RP+E E LISR+IDR IRPLF + ++NE QVI V+ Sbjct: 61 TVNYQEKAFAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 HD+E+SP +V++V SAAL LSG+PF GPV A+V YI+GQYVLNP L++ + + LDL V Sbjct: 121 HDMENSPDIVALVGCSAALTLSGIPFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-- 236 +GT + VLMVE EA++L+E+V+L A+ FGH +PVIE I +LA+ AKEP + +D Sbjct: 181 AGTAEGVLMVESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKAAKEPWDLPEEDPA 240 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + L+ +++++ + + + +K +R ++ + KK +++ S + ++ +G + + Sbjct: 241 VAALKAKLAELGRAPIAEAYKETQKLLRQTKVGEAKKAILAQLSEDEAAMAKG----LLK 296 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++A VVR +LD +R+DGRD++TVR I A+VG+L R HGS+LF RG+TQA+ V TLGT Sbjct: 297 ELEADVVRNAILDTGLRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ +D L+G R +FM+HYNF P + E RMG+P RREIGHG+LA RAIHP+LP+ Sbjct: 357 GQDEQIIDQLAGEYRENFMLHYNFPPYSVNETGRMGSPGRREIGHGKLAWRAIHPLLPEK 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +P AGIAMGL+K+ F +L Sbjct: 417 EKFPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPCAGIAMGLIKEEKGFAVL 476 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GITA+QMD+KI I+ IM +AL+QAK GRLHIL EM+ Sbjct: 477 SDILGDEDHLGDMDFKVAGTEQGITALQMDIKITSITPEIMKIALEQAKGGRLHILGEMA 536 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ +R + P++ ++ +P D+IR VIG GGKVIR IVE TG K++I+DDGT+KIA Sbjct: 537 KGLTGARTDVAANAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIEDDGTIKIA 596 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+S +AA + IR IT PE+ IY G VVK +FGAFV+F GA+DGLVHIS+L+ ER Sbjct: 597 STSPEATQAAIDRIRGITAEPEIGVIYNGTVVKTAEFGAFVNFLGAKDGLVHISELANER 656 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+D+VK+GD V VK+L FDDRGK+KLSM+VVDQ TG I Sbjct: 657 VAKTTDIVKQGDKVKVKVLGFDDRGKVKLSMRVVDQATGADI 698 >gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510] gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510] Length = 711 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/699 (56%), Positives = 520/699 (74%), Gaps = 6/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF VH EIEW GR L LETG+IARQ++GAVL TYG+T VL T V ++ K G DFFPLT Sbjct: 9 MFTVHRKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLT 68 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RPTE E L+SR+IDR IRPLF+ ++NETQVI V+ H Sbjct: 69 VNYQEKAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH 128 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +VSMV ASAAL +SG+PF GP+ A+V Y NGQY+LNP +D+ + LDL V+ Sbjct: 129 DLENDPDIVSMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDQVEDTDLDLVVA 188 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA +L+E+V+L A++FGH+ +PVI I LA+ AKEP + + + Sbjct: 189 GTTEGVLMVESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKEPWDLPEPAYDR 248 Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L+ + + + + + K R +++ K K + + E + + G F++ Sbjct: 249 KALKARLRETVGAAVEAAYTETVKQSRYEKVGAAKAKALETLAEEFDAQSIG---FEFKE 305 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A ++R +L R+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 306 LEADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTS 365 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP+ Sbjct: 366 QDEQIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKE 425 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYTLR+VSE+TES+GSSSMATVCG+SL+LMDAG P+++PVAGIAMGL+K+ F +LS Sbjct: 426 DFPYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAVLS 485 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI I+E IM +AL QAK GRLHIL EM+K Sbjct: 486 DILGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAK 545 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R + E PR+ ++ IP ++IR+VIG GGKVIR IVEQTGAK++IDDDGTVK+++ Sbjct: 546 ALTGAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDDDGTVKVSA 605 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA E I+ I PE+ +Y G+VVKV+DFGAFV+F G+RDGLVHIS+L+ +RV Sbjct: 606 VDQKKSDAAIEWIKGIVAEPEMGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISELAQQRV 665 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 K SDVV +GD+V VK++ FDDRGK+KLSMK VDQ TG+ Sbjct: 666 GKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQVDQATGE 704 >gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter diazotrophicus PAl 5] gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter diazotrophicus PAl 5] gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 712 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/705 (57%), Positives = 517/705 (73%), Gaps = 13/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V RS+K GQDFFPLT Sbjct: 1 MFNYYRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+ V+ H Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P + +++ SAAL LSG+PF GPV +V Y +G Y+LNP L E + +LDL V+ Sbjct: 121 DLENDPAIAALIGCSAALTLSGIPFFGPVAACRVGYADGAYILNPTLPEMKESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA++LSEDV+L A+ FGH + VI+AI LA+ AK P D + S Sbjct: 181 GTSEGVLMVESEASELSEDVMLGAVTFGHEAFQAVIDAIISLAEHAAKAPW--DLAEPSA 238 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 E + Q I R + I E Y R K++ K+ +++ ++E + Sbjct: 239 EEIALKQRIDTLGRAA--IAEAYQERVKQQRYKKVGAAKEAVLAALATEGLDVTAAK--P 294 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +D++A VVR+ +LD R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV T Sbjct: 295 ILKDLEADVVRSAVLDTGYRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVAT 354 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L G R +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+L Sbjct: 355 LGTAQDEQVIDALEGEYRTNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLL 414 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+RIVSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ F Sbjct: 415 PGKDTFPYTMRIVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDRGF 474 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAGT+SGITA+QMD+KI I+ IM +AL QA+ GRLHIL Sbjct: 475 AVLSDILGDEDHLGDMDFKVAGTESGITALQMDIKITSITPEIMKIALGQARDGRLHILG 534 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EMSK L+E R + P++ +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ Sbjct: 535 EMSKALTEGRSDVSSTAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTI 594 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IA+SS + A E IR I PE+ IY G+VVK DFGAFV+F GARDGLVHIS+L+ Sbjct: 595 MIAASSEDQATRAIERIRGIVAEPELGAIYTGKVVKTADFGAFVNFLGARDGLVHISELA 654 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 RVAKT+DVV +GD V VK+L FDDRGK+KLSM+VVDQ TG I Sbjct: 655 QGRVAKTTDVVNQGDVVKVKVLGFDDRGKVKLSMRVVDQQTGADI 699 >gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter hansenii ATCC 23769] gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter hansenii ATCC 23769] Length = 710 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/701 (56%), Positives = 524/701 (74%), Gaps = 7/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V +S+K GQDFFPLT Sbjct: 1 MFDYFRTEIEWGGRPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF ++NE QV+ V+ H Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V+++ SAAL LSG+PF GPV +V YI+G+YVLNP + + + +LDL V+ Sbjct: 121 DMENDPAIVALIGCSAALTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237 GT++ VLMVE EA +LSE V+L A+ FGH + VI+AI +LA+ AK P +V S + Sbjct: 181 GTEEGVLMVESEAAELSEKVMLGAVTFGHEAFQDVIDAIIELAEHAAKAPWDLVEPSAEE 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 KL +++ ++ ++ + + K VR K++ K +++ + + + ++ Sbjct: 241 IKLRKKIEKLGRKAIAEAYQERVKQVRYKKVAAAKDAILAKLDPAEAEAAK----PLLKE 296 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A VVR+ +L+ R+DGRD +T+R I ++VG+L R HGS+LF RG+TQA+V+ TLGT Sbjct: 297 LEANVVRSAVLETGHRIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTG 356 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 357 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKD 416 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ ++F +LS Sbjct: 417 TFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEEFAVLS 476 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI I+ IM +AL QA+ GR+HIL EMSK Sbjct: 477 DILGDEDHLGDMDFKVAGTENGITALQMDIKITSITPEIMEIALDQARGGRMHILGEMSK 536 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+E R + P++ +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ IA+ Sbjct: 537 ALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAA 596 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS + E A E IR I PE+ KIY G+VVK DFGAFV+F G RDGLVHIS+L+ RV Sbjct: 597 SSDEQAEKAIERIRGIVAEPEIGKIYNGKVVKTADFGAFVNFLGPRDGLVHISELAQGRV 656 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG I Sbjct: 657 AKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADI 697 >gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum magneticum AMB-1] gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum magneticum AMB-1] Length = 720 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/707 (57%), Positives = 513/707 (72%), Gaps = 17/707 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+VH EI W GR L LETG++ARQ+DGAV+ TYGET VL TVV +S K G DFFPLT Sbjct: 3 MFNVHRKEITWGGRKLVLETGKVARQADGAVMVTYGETSVLCTVVGAKSQKPGIDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+ ++NE QV+ V+ H Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179 DLE+ P + ++V SAAL +SGLPF GPV A+V Y++G YVLNP + D + LDL V+ Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPKSELDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA QLSEDV+L A++FGH E + VI+AI LA+ CAK+P D + Sbjct: 183 GTVEGVLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKDPW-----DLPE 237 Query: 240 LEEEMSQMIKE--DLRVSCFIPEKYVRCKQID------DLKKKMVSYFSSEHSSWNEGEI 291 E++ + + D V + E Y K+ D +KKK ++ + G Sbjct: 238 PPAEVAVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAVKKKALALLTEAAEIAVAG-- 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + + ++A VVR +L VR+DGRD++TVR I +VG+L R HGS+LF RG+TQA+VV Sbjct: 296 -GILKHLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT +DEQ +D L+G R FM+HYNF P + GE RMG+P RREIGHG+LA RA+ P Sbjct: 355 ATLGTGQDEQIIDQLAGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAMRP 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ KPVAGIAMGL+K+G Sbjct: 415 CLPAKESFPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGT 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 DF +LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI I+E IM +AL QAK GR+HI Sbjct: 475 DFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITSITEEIMKIALGQAKDGRIHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K L +R + PR+ ++IP ++IR VIG GGKVIR I EQTGAK++IDDDG Sbjct: 535 LGEMNKGLDHARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDDDG 594 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+K+AS + A + IR I PE+ IY G+VVKV+DFGAFV+F G+RDGLVHIS+ Sbjct: 595 TIKVASVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVVDFGAFVNFLGSRDGLVHISE 654 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 L+ ERVAKT+DVVK+GD V VK+L FDDRGK+KLSMK VDQ TG+ I Sbjct: 655 LARERVAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVDQTTGEDI 701 >gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum gryphiswaldense MSR-1] Length = 721 Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/702 (56%), Positives = 515/702 (73%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V EI W GR L LE G+IARQ+DGAVLATYG+T VL TVV ++ K G DFFPLT Sbjct: 3 MFNVTRKEITWGGRKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF Y+NETQV+ V+ H Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVDGYRNETQVVCTVLSH 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ P +V+MV ASAAL +SGLPF GP+ A+V YING+YVLNP + + +LDL V+ Sbjct: 123 DLENDPDIVAMVGASAALTISGLPFMGPIAAARVGYINGEYVLNPTTAQVKESALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237 GT + VLMVE EA +LSED++L A++ GH E + VI+AI +A+ CAKEP + + + Sbjct: 183 GTVEGVLMVESEAKELSEDIMLGAVMHGHREFQAVIQAIIDMAESCAKEPWDVPAPPAEV 242 Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + +E + + I +L + I +K R + +K K ++ + G I F+ Sbjct: 243 AVVEGKFAAAGIPAELAEAYKIVKKQDRYAAVGAVKVKALALLTEAAELAVAGPI---FK 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++A VVR +L +R+DGRD++TVR I +QVG+L R HGS+LF RG+TQA+VV TLGT Sbjct: 300 HMEADVVRGNILKTGIRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ +D+L G R +FM+HYNF P + GE RMG+P RREIGHG+LA RA+ P LP Sbjct: 360 GQDEQIIDALDGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPCLPTK 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PVAGIAMGL+K+ F +L Sbjct: 420 ESFPYTIRVVSEITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+TA+QMD+KI I+E IM +AL QAK GRLHIL EMS Sbjct: 480 SDILGDEDHLGDMDFKVAGTAEGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMS 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L +R ++ PR+ IP ++IR VIG GGKVIR I E TGAK++IDDDGT+K+A Sbjct: 540 KGLDSARTEVSGNAPRIITFNIPKEKIREVIGTGGKVIREICENTGAKIDIDDDGTIKVA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S + A + IR I PE+ +Y G+VVKV+DFGAFV+F G+RDGLVHIS++S +R Sbjct: 600 SVDADAGQRAIDWIRGIVAEPELGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISEISRDR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VAKT+DV+K+GD+V VK+L FDDRGK+KLSMK VDQ TG+ I Sbjct: 660 VAKTADVLKQGDSVKVKVLGFDDRGKVKLSMKCVDQETGEDI 701 >gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/703 (54%), Positives = 517/703 (73%), Gaps = 5/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL V + +K+GQDFFPLT Sbjct: 1 MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ A G+IPGG+ +RE+RPTE E L+SR+IDR +RPLF + + NE VI V+ Sbjct: 61 VNYQEKFSAAGRIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177 D E+ P +V+M+AASAAL +SG+PF GP+ A+V + NG+Y LNP +D+G LDL Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGRLDLV 180 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KD 236 V+ T DAV+MVE EA +L+E+ +L A++F H+EC+ VI AI +LA+ AK+P + S D Sbjct: 181 VAATNDAVMMVESEAKELTEEEMLGAVMFAHDECRKVIGAIIELAEQAAKDPWELASGDD 240 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVF 295 + ++ + QMI +D+ + + +K R +++ ++K+ +++SSE + + + Sbjct: 241 HADMKSAIKQMIGDDIAKAYKLTDKSARSDALNEAREKVKAHYSSEEFDGQQKMTAIKLV 300 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + +++++VR +L R+DGR + VR I A VGLL RTHGSSLF RG+TQAI TLG Sbjct: 301 KKLESEIVRGAILKDGQRIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLG 360 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T++ EQ +D L G N FM+HYNF P + GEV R G RREIGHG+LA RA+HPVLP Sbjct: 361 TKDAEQMIDGLEGLSYNHFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVLPS 420 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+R++S+ITES+GSSSMATVCG L++MDAGVPI +PV+GIAMGL+ +GDDF + Sbjct: 421 HEDFPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV 480 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAG++SGIT++QMD+K+ GI++ IM AL+QAK GR HIL EM Sbjct: 481 LSDILGDEDHLGDMDFKVAGSESGITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEM 540 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K L +R + + PR+E M I +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI Sbjct: 541 TKALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKI 600 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +SS+ EIEAAR+ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ E Sbjct: 601 SSSNADEIEAARKWIEGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNE 660 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 RV K +DVV EG V VK+L+ D+RGK++LSM+VVDQ TG+ + Sbjct: 661 RVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 703 >gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 709 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/701 (55%), Positives = 516/701 (73%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + E++W G PL LE+G++ARQ+DGAV+ T GET VL T V + K GQDFFPLT Sbjct: 1 MFKIFRKELDWGGTPLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+ENE L+ R+IDR IRPLF K +K ETQVI V+ H Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSENETLVCRLIDRPIRPLFPKSFKCETQVICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E++P + +M+ ASAAL LSG+PF GP+ GA++ +IN +YVLNP +++ D+ LDL ++ Sbjct: 121 DMENNPDIAAMIGASAALTLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDESDLDLVMA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA +LSE+V+L A+ FGH+ KPVIEAI LA+ CAKEP +D + Sbjct: 181 GTMEGVLMVESEAQELSEEVMLGAVNFGHDAIKPVIEAIIDLAESCAKEP-----RDLPE 235 Query: 240 LEEE---MSQMIKE---DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 E +S ++KE + I +K R + ++ + ++ + G ++ Sbjct: 236 EPAETSTISDILKEFEGAFEAAYKIADKAERQAAVGAVRSEAKDKIGDDYDAVLVGGLI- 294 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A VVR +L VR+DGRD++TVR I ++ G L R HGS+LF RG+TQA+VV T Sbjct: 295 --KGLEADVVRGAILKTGVRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVAT 352 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +DSL G R++FM+HYNF P + GE R+G+P RREIGHG+LA RAI P++ Sbjct: 353 LGTGQDEQIIDSLVGEGRSNFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAIRPLM 412 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+VSEITES+GSSSMATVCG SLALMD+GVP+++PVAGIAMGL+K+GDDF Sbjct: 413 PSKEEFPYTVRLVSEITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDF 472 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAG+D+GIT++QMD+KI I+ IM +AL QA+ GR+HIL Sbjct: 473 AVLSDILGDEDHLGDMDFKVAGSDAGITSLQMDIKITSITPEIMQIALDQARDGRIHILG 532 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM+K L+ +R L + P++ + IP D+IR++IG GGK+IR I E TGAK++I+DDGTV Sbjct: 533 EMAKALTSAREVLADSAPKITTLNIPVDKIRDIIGPGGKIIREICETTGAKIDIEDDGTV 592 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 K+A+ + A EAA IR I PE+ IY G+VVK +DFGAFV+F GA+DGLVHIS+L Sbjct: 593 KVAAVTGASGEAAVARIRDIVAEPELGVIYDGKVVKTVDFGAFVNFLGAKDGLVHISELQ 652 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 R KT+D+ KEGDTV VK++ FDDRGK+KLSMK VDQ T Sbjct: 653 NGRTEKTTDICKEGDTVKVKVIGFDDRGKVKLSMKRVDQET 693 >gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium ATCC 15444] gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium ATCC 15444] Length = 713 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/702 (54%), Positives = 518/702 (73%), Gaps = 4/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +V +EWAGR L +ETG++ARQ+DGAV+ YG+T+VLAT V+ + K GQDFFPLT Sbjct: 1 MFNKQSVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A G+IPGG+ +RE RPTE E L SR+IDR IRPLF +K+E QV++ + + Sbjct: 61 VNYQEKYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE+ ++++V ASAAL+LSG PF GP+ A+V Y +GQY++NP + E ++ LDL V+ Sbjct: 121 DLENDADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV+MVE +A +LSEDV+L A++ GH+ +PVI+AI LA+ AKEP + D S Sbjct: 181 GTTDAVMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIV-SVFE 296 + + + DL + I K R I K K + + E E+ +VF+ Sbjct: 241 ALKSVIDTVGADLSKAYKITAKGERYAAIGAAKDKAKAALLGTDEAPGVMTPEVFKTVFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +A VVR +L R+DGR + +R I A+ G L RTHGSSLF RG+TQAI V TLGT Sbjct: 301 EAEASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQY+D L GT++ FM+HYNF P + GE RMG RREIGHG+LA RA+ VLP+ Sbjct: 361 SDDEQYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKH 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMATVCG SLA+MDAGVP+++PV+GIAMGL+ +G +F +L Sbjct: 421 EDFPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT++G+T++QMD+K+ GI+++IM AL+QAK GR+HIL EM Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMG 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L+ SR QL E P++EI+ +P D+IR+VIG GGKVIRGIV++TGAKVNIDDDGTV+I+ Sbjct: 541 KALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDGTVQIS 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+AA +MI+ IT EV +IY+G+VV + DFG FV+F G +DGLVH+SQ++ +R Sbjct: 601 AMDRKSIDAAIKMIKGITAEAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQMANKR 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + ++VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + Sbjct: 661 IGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEL 702 >gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter pasteurianus IFO 3283-01] gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-01] gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-03] gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-07] gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-22] gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-26] gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-32] gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1 [Acetobacter pasteurianus IFO 3283-12] Length = 716 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/701 (55%), Positives = 524/701 (74%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V + +K GQDFFPLT Sbjct: 1 MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI V+ H Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P + +++ SAAL LSG+PF GPV A+V + +G ++LNP ++ + L+L V+ Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDF 237 GT + VLMVE EA++LSE+V+LDA+ FGH +PV++AI LA+ AKEP + +K+ Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 +L +++ + ++ + + +K VR +++ ++ ++ +++ + + +D Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAAREAIIEKLTADELDVAAAK--PMIKD 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A VVR+ +L R+DGRD TVR I +VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R +FM+HYNF P + GE R+G+P RREIGHG+LA RAIHP++P Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI I+ IM +AL QA+ GR+HIL EMSK Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+E+R + P++ M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+ Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + + A + I I PE+ +IY G+VVK DFGAFV+F GARDGLVHIS+L+ RV Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG I Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699 >gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum DM001] gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum DM001] Length = 716 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/701 (55%), Positives = 523/701 (74%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V + +K GQDFFPLT Sbjct: 1 MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI V+ H Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P + +++ SAAL LSG+PF GPV A+V + +G ++LNP ++ + L+L V+ Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDF 237 GT + VLMVE EA++LSE+V+LDA+ FGH +PV++AI LA+ AKEP + +K+ Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 +L +++ + ++ + + +K VR +++ + +V +++ + + +D Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAARAAIVEKLTADELDVAAAK--PMIKD 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A VVR+ +L R+DGRD TVR I +VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R +FM+HYNF P + GE R+G+P RREIGHG+LA RAIHP++P Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI I+ IM +AL QA+ GR+HIL EMSK Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+E+R + P++ M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+ Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + + A + I I PE+ +IY G+VVK DFGAFV+F GARDGLVHIS+L+ RV Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG I Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699 >gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae DFL 12] gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae DFL 12] Length = 711 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/707 (55%), Positives = 510/707 (72%), Gaps = 12/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +EW L LETG+IARQ+DG V+ATYGET V+A V Y RS K GQDFFPLT Sbjct: 1 MFNQVKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF +KNE VI V+ H Sbjct: 61 VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DLE+ P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+YVLNP +D+ DQ Sbjct: 121 DLENDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +LSE +L A+ FGH + +PVI+ I +LA+ AKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S+L ++ ++ +R + I +K R I + +++ S E + + + Sbjct: 240 QPADYSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLSDEEQT--DPNLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + +++ ++R ++ R+DGR +TVR I ++VG+L RTHGS+LF RG+TQ +VV Sbjct: 298 SALKKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ++D+L G +++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+ IM AL+QAK GRLHI Sbjct: 478 SYAVLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LSE R Q E PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 597 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS++ I+ A EMI SI PE K+Y G VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 598 IIKIASANGEAIKKAYEMIHSIVAEPEEGKVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQ 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ I Sbjct: 658 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 704 >gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii RW1] gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii RW1] Length = 774 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/700 (53%), Positives = 508/700 (72%), Gaps = 3/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD VEI+W G+ L LETGR+ARQ+DGAVLAT GETVVL V RS+K+GQDFFPLT Sbjct: 1 MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ ++ G+IPGG+ +RE TE E L+SR+IDR IRPLF + + NE VI V+ + Sbjct: 61 VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179 D E+ P +++M+AASAAL +SG+PF GP+ A+V Y +G+Y+LNP D G LDL V+ Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238 T DAV+MVE EA +LSE+V+L A++F H + VI+AI KLA+ AK+P + + D S Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLS 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + ++ +++ +D+ + + K R +++ + K F+ + + ++ + + + + Sbjct: 241 AAKTKLKKLVGKDITAAYKLTNKSARSSALNEARAKAKEAFA-DATPQDQMAAIKLVKKL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A++VRT +L R+DGRD+ TVR I A+ L R HGS+LF RG+TQ+I TLGT+E Sbjct: 300 EAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKE 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 EQ +D L+G + FM+HYNF P + GEV R GAP RRE+GHG+LA RA+H VLP + Sbjct: 360 SEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+ S+ITES+GSSSMATVCG SLA+MDAGVPI +PV+GIAMGL+ +G DF ++SD Sbjct: 420 FPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT GIT MQMD+KI GI+E I AL QAK GR HIL EM+K Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L +R +L PR+E M++P D+IR++IG GGK+IR IV TGAKV+IDDDGTVKI+SS Sbjct: 540 LDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSS 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A+IEAAR I I PEV KIY G+VV ++DFGAFV+F G +DGLVH+S++ ERV Sbjct: 600 DTAQIEAARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K +D + EG V VK+L+ D+RGK++LSM+VVDQ TG+ + Sbjct: 660 KVADALSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 699 >gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter bethesdensis CGDNIH1] gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 720 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/701 (54%), Positives = 513/701 (73%), Gaps = 4/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E++ GR L LETG+IARQ+DGAVLA G+T+VL T V +S K GQDFFPLT Sbjct: 1 MFNYFRKELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+E+E L+SR+IDR IRPLF + + NE QVI V+ H Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D+E+ P +V+++ SAAL LSG+PF GPV ++V +NG +VLNP L++ + LDL V+ Sbjct: 121 DMENDPDIVALIGCSAALTLSGIPFFGPVAASRVGLVNGAFVLNPTLEQRAESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--F 237 GT + VLMVE EA +LSED +L A+ FGH +PVI+AI LA+ A++P + ++ Sbjct: 181 GTAEGVLMVESEAEELSEDQMLAAVEFGHKGFQPVIDAIIALAEHAARDPWTLPEQNPEH 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L++ +++ + L + K +R ++I KK+++ + E S+ +D Sbjct: 241 VALKQRLNEAGRTLLGNAYQEKVKQLRQEKISAAKKQIIETLGI-GGTPEESIAKSMLKD 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A +VR +LD +R+DGRD+ TVR I +VG+L R HGS+LF RG+TQA+ V TLGT Sbjct: 300 LEADIVRNAILDTGIRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTG 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ VD+L+G R+ FM+HYNF P + GE RMG+P RREIGHG+LA RA+HPVLP Sbjct: 360 QDEQVVDALTGEYRSHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPVLPAKD 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+ F +LS Sbjct: 420 AFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ G+T++QMD+KI I+ IM +ALQQA+ GR+HIL EM+K Sbjct: 480 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKITSITTEIMRIALQQARDGRMHILGEMAK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ +R + PR+ ++ +P ++IR VIG GGKVIR IVE +GAK++I+DDGT+KIAS Sbjct: 540 AITGARGSVAATAPRITVINVPKEKIREVIGTGGKVIREIVEFSGAKIDIEDDGTIKIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + A + I+ I PEV KIY G+VVK DFGAFV+F G+RDGLVHIS+L RV Sbjct: 600 TSEESTQKAIDRIQGIVAEPEVGKIYNGKVVKTADFGAFVNFLGSRDGLVHISELQQGRV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 KTSDV+ GD V VK+L FDDRGK+KLSM++VDQ TG+ I Sbjct: 660 NKTSDVINVGDVVKVKVLGFDDRGKVKLSMRLVDQTTGEDI 700 >gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] Length = 763 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/702 (54%), Positives = 510/702 (72%), Gaps = 5/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE VI V+ Sbjct: 61 VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177 D E+ P +V+M+AASAAL +SG+PF GP+ A+V + NG+Y LNP L +++G LDL Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLANALDEEGRLDLV 180 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKD 236 V+ TQDAV+MVE EA +L+E+ +L A+ F H+E + V+ AI LA+ AK+P I+ + D Sbjct: 181 VAATQDAVMMVESEAKELTEEEMLGAVAFAHDEARKVVGAIVDLAEQAAKDPWEIERADD 240 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 S +++E+ +I +D+ + I +K R +ID + K+ + + E + + + Sbjct: 241 LSGMKDEIRGLIGDDIAAAYKITDKSERRDRIDAARDKVKAKYEDEDGQ-TQSAANKIIK 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++++VR +L R+DGR + VR I A VGLL RTHGS+LF RG+TQAI TLGT Sbjct: 300 KLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 ++ EQ +D L G N+FM+HYNF P + GEV R G SRRE GHG+LA RA+HPVLP Sbjct: 360 KDAEQMIDGLEGLSYNNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDH 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+RI+S+ITES+GSSSMATVCG L++MDAGVPI +PV+GIAMGL+ +G+DF +L Sbjct: 420 EDFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAG+++GIT MQMD+K+ GI++ IM AL+QAK GR HIL EM+ Sbjct: 480 SDILGDEDHLGDMDFKVAGSEAGITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMA 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K L +R + + PR+E M I +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+ Sbjct: 540 KALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKIS 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ EIEAAR+ I I + EV K+Y G+VV ++DFGAFV+F G +DGLVH+S++ ER Sbjct: 600 SSNADEIEAARKWIEGIVEEAEVGKVYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V K +DVV EG V VK+L+ D RGK++LSM+VVDQ TG+ + Sbjct: 660 VEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 701 >gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] Length = 778 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/701 (54%), Positives = 516/701 (73%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV V IE AG+ L LETGRIARQ+D AVLATYGETVVL V +S+KDGQDFFPLT Sbjct: 8 MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLT 67 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR IRPLF + + NE VI V+ Sbjct: 68 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 127 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ES P +V+M+AASAAL LSG+PF GP+ A+V Y +G+Y LNP L+E +G LDL V+ Sbjct: 128 DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLDLVVA 187 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 T +AV+MVE EA +LSEDV+L A++F H+ K V+ AI LA+ AK+P + ++D Sbjct: 188 ATGNAVMMVESEAKELSEDVMLGAVMFAHDAAKKVVNAIIDLAEQAAKDPWEMAAQDDLG 247 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED 297 L+++++++I +D+ + + +K R +++ + K ++F+ E + + + + Sbjct: 248 GLKKKLTKLIGKDIAAAYKLTDKSARSNALNEARAKAKAFFAEEELDAQTVMAGIKLTKK 307 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VRT +L R+DGR + +R I A VG L RTHGS+LF RG+TQAI TLGT+ Sbjct: 308 LEAEIVRTAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK 367 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + EQ +D L+G +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP Sbjct: 368 DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 427 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G D+ ++S Sbjct: 428 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAVIS 487 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I +AL+QAK GR HIL EMSK Sbjct: 488 DILGDEDHLGDMDFKVAGTENGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 547 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 LS +R +L PR+E + I +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S Sbjct: 548 ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A+IEAA++ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ ERV Sbjct: 608 SDTAQIEAAKKWILGIVEEAEVGKIYSGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 667 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K +DVV EG V VK+L+ D RGK++LSM+VVDQ TG+ + Sbjct: 668 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 708 >gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium aromaticivorans DSM 12444] gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 772 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/698 (54%), Positives = 504/698 (72%), Gaps = 4/698 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR +RPLF + + NE VI V+ + Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFV 178 D E+ P +V+M+AASAAL +SG+PF GP+ A+V +I G+YVLNP+ D G LDL V Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIAAARVGFIEGEYVLNPKQDVALADGRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDF 237 + T AV+MVE EA +LSED +L A++F H+E K VI AI +LA+ AK+P ID S + Sbjct: 181 AATDTAVMMVESEAKELSEDEMLGAVLFAHDEIKKVIGAIIQLAEKAAKDPWDIDLSDNT 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + +++++ ++ +D+ + + +K R ++ + +E + + + + Sbjct: 241 ADIKKKLKDLVGKDVAAAYKLTDKSARSNALN-EARAKAKAAFAEEGAQTQMVAMKTMKK 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A +VR +L R+DGR + VR I A VG L RTHGSSLF RG+TQAI TLGT+ Sbjct: 300 VEADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTK 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + EQ +D L G + +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP Sbjct: 360 DAEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+RI+S+ITES+GSSSMATVCG L++MDAGVP+ +PV+GIAMGL+ +GD F +LS Sbjct: 420 EFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GIT MQMD+K+ GI+ I +AL+QA GR HIL EM+K Sbjct: 480 DILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L E+R +L PR+E + I +IR+VIG GGKVIR IV TGAKV+IDD+G +KI+S Sbjct: 540 ALGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S L +IEAA+ I I + EV KIYKG+VV ++DFGAFV+F G +DGLVH+S++ ERV Sbjct: 600 SDLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 K +DVVKEG V+VK+L+ D RGK++LSM+VVDQ TG Sbjct: 660 EKPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETG 697 >gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis RB2256] gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256] Length = 771 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/701 (54%), Positives = 504/701 (71%), Gaps = 9/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV V IEW G L LETG++ARQ+DGAV+AT GETVVL V +S+KDGQDFFPLT Sbjct: 1 MFDVKKVSIEWGGETLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKDGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR IRPLF + + NE I V+ + Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFV 178 D + P +++MVAASAAL +SG+PF GP+ A+V Y+NG+Y+LNP DE +G LDL V Sbjct: 121 DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNP-TDEQVAEGDLDLVV 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237 + T DAV+MVE EAN+LSE+V+L A++F H+ CK V++AI KLA+ AKEP I S D Sbjct: 180 AATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEIASSDDD 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSV 294 + L++++ ++I +D+ + + +K R +++ + K F ++ + G + + Sbjct: 240 AALKDKLRKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFIADGLDPQAVMAG--IKI 297 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + ++A++VRT +L + R+DGR + +R I A+ L R HGS+LF RG+TQ I TL Sbjct: 298 VKKLEAEIVRTAILKEGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTL 357 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT++ EQ +D L+G FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP Sbjct: 358 GTKDAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLP 417 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+ S+ITES+GSSSMA+VCG SLA+MDAGVPI +PV+GIAMGL+ +G D+ Sbjct: 418 SKDEFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYA 477 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI GDEDHLG MDFKVAGT GIT MQMD+KI GI+ I AL QAK GR HIL E Sbjct: 478 ILSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALAQAKEGRAHILGE 537 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M+K L E R +L PR+E M I +IR+VIG GGKVIR IV TGAKV+IDD+G +K Sbjct: 538 MNKALGEVRTELSAHAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIK 597 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I+SS L +IEAAR+ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ Sbjct: 598 ISSSDLDQIEAARKWIAGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIRN 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ERV K +DV+ EG V VK+L+ D RGK++LSM+VVDQ TG Sbjct: 658 ERVEKVADVLSEGQDVKVKVLEIDPRGKVRLSMRVVDQETG 698 >gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 748 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/696 (55%), Positives = 513/696 (73%), Gaps = 2/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ EI+W G+ L LETG++ARQ+DGAV+AT GETVVL V +++K+GQDFFPLT Sbjct: 1 MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E LISR+IDR IRPLF + + NET VI VM + Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P +++M+AASAAL LSG+PF GP+ A+V Y +G+++LNP L++ ++ LDL V Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+DAV+MVE EAN+L E+V+L+A+ F H +PVI+AI LA+ AKEP + S D S Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ ++ ++ + + K R + + K + F E + I + + ++ Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVEALSKAKAVLDEAFP-EADPTEKLRIQKLAKKLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 AK+VRT +L + R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V TLGT + Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +D L+G FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP A F Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R++S+ITES+GSSSMATVCG LALMDAGVP+++PV+GIAMGL+ + D F ILSDI Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM AL+QAK GR HIL EMSK L Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E R ++ PR+E M++P D+IR+VIG GGKVIR IV TGAKV+I+DDGTV+++SS Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A IEAARE I I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++ ERV K Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SDV+ EG V VK+L+ D+RGK++LSM+VVDQ TG Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETG 695 >gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 748 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/696 (55%), Positives = 512/696 (73%), Gaps = 2/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ EI+W G+ L LETG++ARQ+DGAV+AT GETVVL V +++K+GQDFFPLT Sbjct: 1 MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E LISR+IDR IRPLF + + NET VI VM + Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P +++M+AASAAL LSG+PF GP+ A+V Y +G+++LNP L++ ++ LDL V Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+DAV+MVE EAN+L E+V+L+A+ F H +PVI+AI LA+ AKEP + S D S Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ ++ ++ + + K R + K + F E + I + + ++ Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVDALSKAKAVLDEAFP-EADPTEKLRIQKLAKKLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 AK+VRT +L + R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V TLGT + Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +D L+G FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP A F Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R++S+ITES+GSSSMATVCG LALMDAGVP+++PV+GIAMGL+ + D F ILSDI Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM AL+QAK GR HIL EMSK L Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E R ++ PR+E M++P D+IR+VIG GGKVIR IV TGAKV+I+DDGTV+++SS Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A IEAARE I I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++ ERV K Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SDV+ EG V VK+L+ D+RGK++LSM+VVDQ TG Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETG 695 >gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum ATCC 11170] gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170] Length = 708 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/698 (55%), Positives = 511/698 (73%), Gaps = 6/698 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+V EIEW GR L LETGRIARQ+DGAV+A+ G+T VL T V ++ K DFFPLT Sbjct: 3 LFNVFRKEIEWGGRKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKT-KSKFDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF YKNETQ++ V+ H Sbjct: 62 VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCH 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 DLE++P +V++V ASAAL LSGLPF GP+ A+V I+G +VLNP D+ S LDL V+ Sbjct: 122 DLENNPDIVAIVGASAALTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237 GT++ VLMVE EA++LSE +LDA++FGH +PVI+AI LA+ CA+EP I + + Sbjct: 182 GTREGVLMVESEAHELSEQQMLDAVMFGHEGYQPVIDAIIALAEQCAREPRAIEPPAPEA 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + ++ ++ + LR + +K VR ++D ++ + + F+ + ++ + F+D Sbjct: 242 EAVAAKVREVGEAGLRDAYKEADKMVRHDKVDAVRDAVTAAFAGDDAALAL--AGAAFKD 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +VR +LD +R+DGRD++TVR I G+L R HGS+LF RG+TQA+V TLGT Sbjct: 300 LEKDIVRGSILDTGLRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTG 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP++P Sbjct: 360 QDEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMMPAKD 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ VAGIAMGL+K+ + F +LS Sbjct: 420 AFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDERFAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GIT++QMD+KI I++ IM +AL QAK GR+HIL EM+K Sbjct: 480 DILGDEDHLGDMDFKVAGTANGITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEMTK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L +R + +F PR+ + +PP ++R VIG GGKVIR I E TG K++I+DDGT+KIAS Sbjct: 540 ALGNARSDVSDFAPRITTIKVPPQKVREVIGSGGKVIREITEVTGTKIDIEDDGTIKIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + A + I+ I PE+ +Y G+VVK+MDFGAFV+F G RDGLVHIS+LS +RV Sbjct: 600 ADAEATQRAVDWIKGIVAEPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 K DVV GD V VK + FDDRGKIKLSMK VDQ TG Sbjct: 660 KKVGDVVNVGDQVKVKCVGFDDRGKIKLSMKQVDQVTG 697 >gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] Length = 716 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/706 (53%), Positives = 514/706 (72%), Gaps = 17/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ ++W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNISKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +K+E V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G+YVLNP +D+ QG Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + D+S+L E + +E +R + I +K R + +K+++ S E + + S Sbjct: 241 APDYSELFEVVKGFGEEKMRAAYAISDKQERVAAVSAVKEEIKGQLSEEQ--LEDANLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ K R+DGR + VR I ++ +L RTHGSSLF RG+TQA+VV T Sbjct: 299 ALKKLESNVLRADVVKNKRRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L G R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +DG + Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDGGE 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHIL Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 EM+K L+E+ GEF+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D Sbjct: 539 AEMAKALTEA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG +KIAS++ I+ A +MI SI PE +YKG+VVK++DFGAFV+F G RDGLVH+ Sbjct: 595 DGVIKIASANGEAIQKAYDMIYSIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHV 654 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SQ+ R+ SDV+KEG V+VKLL FDDRGK++L+MK+VDQ TG Sbjct: 655 SQIENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700 >gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] Length = 762 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/706 (53%), Positives = 512/706 (72%), Gaps = 9/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE R TE E L SR+IDR RPLF + + NE VI V+ + Sbjct: 61 VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR----LDEDQGSLD 175 D E+ P +V+M+AASAAL +SG+PF GP+ A+V + N G+YVLNP L ED G LD Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGED-GRLD 179 Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS- 234 L V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI +LA+ AK P +D Sbjct: 180 LVVAATQDAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQAAKAPWELDPV 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIV 292 +D S +++ I DL + I +K R ++ ++K F+ +E + Sbjct: 240 EDKSAKMDKLRAAIGSDLEAAYKITDKSARQDAVNAAREKAREAFADLAESDPAEYLGTL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +++++VR +L R+DGR + VR I A VGLL RTHGS+LF RG+TQAI Sbjct: 300 KLVKKLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT++ EQ +D L G ++FM+HYNF P + GEV R G SRRE GHG+LA RA+ PV Sbjct: 360 TLGTKDAEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPYT+R++S+ITES+GSSSMATVCG +L++MDAGVP+++PV+GIAMGL+ +G+D Sbjct: 420 LPDAEEFPYTIRVLSDITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGED 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM AL+QAK GR HIL Sbjct: 480 FAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTQALEQAKAGRAHIL 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K L+ +R ++ + PR+E M I +IR+VIG GGKVIR IV +TGAKV+IDD+GT Sbjct: 540 GEMAKALTGARTEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KI+SS+ EIEAA++ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ Sbjct: 600 IKISSSNADEIEAAKKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEM 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ERV K +DVV EG V VK+L+ D+RGK++LSM+VVDQ TG+ + Sbjct: 660 KNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 705 >gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis HTCC2594] gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis HTCC2594] Length = 769 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/707 (54%), Positives = 513/707 (72%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL V RS+K+GQDFFPLT Sbjct: 1 MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAARSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE VI V+ + Sbjct: 61 VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR----LDEDQGSLD 175 D E+ P +V+M+AASAAL +SGLPF GP+ A+V + N G+YVLNP L ED G+LD Sbjct: 121 DGETEPDIVAMIAASAALTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGED-GNLD 179 Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS- 234 L V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI LA+ AK+P +D Sbjct: 180 LVVAATQDAVMMVESEAKELTEEQMLGAVMFAHEESRKVIGAIIDLAEQAAKDPWELDPV 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE--GEI 291 +D S E++ +I +DL + I K R ++ + K ++S E S E G + Sbjct: 240 EDKSAALEKLRGVIGDDLAKAYKITNKAQRQDAVNAARTKAREHYSDLEESDPAEYMGRL 299 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + + +++ +VR +L R+DGR ++ VR I A VGLL RTHGS+LF RG+TQAI Sbjct: 300 -KLVKKLESDIVRKAILKDGQRIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICT 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++ EQ +D L G ++FM+HYNF P + GEV R G SRRE GHG+LA RA+ P Sbjct: 359 TTLGTKDSEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRP 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +GD Sbjct: 419 VLPDNEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGD 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 DF +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM AL+QAK GR HI Sbjct: 479 DFTVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTKALEQAKAGRAHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M++ L SR ++ + PR+E M I +IR+VIG GGKVIR IV +TGAKV+IDD+G Sbjct: 539 LGKMTEALGSSRGEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KI+SS+ EIEAAR+ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S+ Sbjct: 599 VIKISSSNADEIEAARKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + ERV K +DVV EG V VK+L+ D RGK++LSM+VVDQ TG+ + Sbjct: 659 MKNERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 705 >gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 715 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/707 (54%), Positives = 512/707 (72%), Gaps = 12/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD I+W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF +K+E V+ V+ H Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL +SG+PF GP+ A+V + +G+YVLNP RL+ +Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E +L A+ FGH +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 S D+S L + + + D+R + I +K R I+ K K+++ S E + + Sbjct: 240 ASPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEEE--LLDPNLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + +++ ++R ++D + R+DGRD++TVR I +VG L RTHGSSLF RG+TQA+VV Sbjct: 298 SALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L G R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHI Sbjct: 478 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LSE R + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDG Sbjct: 538 LGEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDG 597 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+KIAS++ I+ A +MI SI PE KIY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 598 TIKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQ 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++ +R+ ++V+KEG V VKLL FDDRGK++L MK+VDQ TG+ I Sbjct: 658 IAGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEI 704 >gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus denitrificans PD1222] gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222] Length = 736 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/708 (53%), Positives = 512/708 (72%), Gaps = 12/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD I+W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 22 MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 81 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF +K+E V+ V+ H Sbjct: 82 VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 141 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL +SG+PF GP+ A+V + +G+YVLNP RL+ +Q Sbjct: 142 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQ- 200 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E +L A+ FGH +PVI+ I LA+ AKEP Sbjct: 201 RLDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEF 260 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 S D+S L + + + D+R + I +K R I+ K K+++ S E + + Sbjct: 261 ASPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEEE--LLDPNLG 318 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + +++ ++R ++D + R+DGRD++TVR I +VG L RTHGSSLF RG+TQA+VV Sbjct: 319 SALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVT 378 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L G R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 379 TLGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 438 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 439 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 498 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHI Sbjct: 499 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHI 558 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LSE R + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDG Sbjct: 559 LGEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDG 618 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+KIAS++ I+ A +MI SI PE KIY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 619 TIKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQ 678 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ +R+ ++V+KEG V VKLL FDDRGK++L MK+VDQ TG+ I Sbjct: 679 IAGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIA 726 >gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 714 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/707 (53%), Positives = 510/707 (72%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V IEW G L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF +KNE +I+ V+ H Sbjct: 61 VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V Y NG+YVLNP +D+ Q Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +LSE +L A+ FGH +PVI+ I A+ AKEP Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292 D++ L ++ + + +R + I EK R ID + + + S +E + N G Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELADENLG--- 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + F+ +++ ++R +++ R+DGRD++TVR I ++ +L RTHGS+LF RG+TQA+VV Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT EDEQ +D+L G R++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LS + + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS+ A I+ A +MI SI PE +IY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++ +R+ ++V+KEG V VKLL FD+RGK++L MK+VDQ TG+ I Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703 >gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides ATCC 17025] gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides ATCC 17025] Length = 740 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/708 (52%), Positives = 510/708 (72%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V IEW G L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 27 MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 86 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF +KNE +I+ V+ H Sbjct: 87 VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 146 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V Y NG+YVLNP +D+ Q Sbjct: 147 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 206 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +LSE +L A+ FGH +PVI+ I A+ AKEP Sbjct: 207 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 266 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292 D++ L ++ + + +R + I EK R ID + + + S +E + N G Sbjct: 267 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELADENLG--- 323 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + F+ +++ ++R +++ R+DGRD++TVR I ++ +L RTHGS+LF RG+TQA+VV Sbjct: 324 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 383 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT EDEQ +D+L G R++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 384 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 443 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 444 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 503 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 504 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHI 563 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LS + + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 564 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 622 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS+ A I+ A +MI SI PE +IY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 623 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 682 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ +R+ ++V+KEG V VKLL FD+RGK++L MK+VDQ TG+ I Sbjct: 683 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIA 730 >gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium nitrogenifigens DSM 19370] gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium nitrogenifigens DSM 19370] Length = 763 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/700 (53%), Positives = 503/700 (71%), Gaps = 3/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR +RPLF + + NE VI VM + Sbjct: 61 VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P +V+M+AASAAL +SG+PF GP+ A+V + +G+Y LNP + + +G LDL V+ Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 T AV+MVE EA +L+ED +L A++F H E + VI AI +LA+ AK+P +D D + Sbjct: 181 ATDTAVMMVESEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKAAKDPWEVDLTDNTA 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++ ++ ++ +D+ + + K R ++ + K + FS E S + + + + Sbjct: 241 DIKAKLKSIVGDDIAAAYKLTNKSERANALNAARDKAKAAFS-EESPQTQMVAIKTLKKV 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++ +VRT +L R+DGR VR I + VG L RTHGS+LF RG+TQ I TLGT++ Sbjct: 300 ESDIVRTAILKDGQRIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKD 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 EQ +D L G FM+HYNF P + GEV R GAP RREIGHG+LA RA++PVLP Sbjct: 360 AEQMIDGLDGLTYQRFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALNPVLPSKED 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R++S++TES+GSSSMATVCG L+LMDAGVPI +PV+GIAMGL+ +GDDF +LSD Sbjct: 420 FPYTIRVLSDVTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGDDFTVLSD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT GIT++QMD+K+ GI+E I AL QAK GR HIL EM++ Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L E R +L PR+E ++I +IR VIG GGKVIR IV TGAKV+IDD+G +KI+S+ Sbjct: 540 LGEVRTELSAHAPRIETISIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGVIKISSA 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +A+IEAA++ I I + PEV K+Y G+VV ++DFGAFV+F G RDGLVH+S++ ERV Sbjct: 600 DVAQIEAAKKWILGIVEEPEVGKVYNGKVVNIVDFGAFVNFMGGRDGLVHVSEMKNERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K +DVVKEG V VK+L+ D+RGK++LSM++VDQ TG I Sbjct: 660 KPTDVVKEGQEVKVKVLEIDNRGKVRLSMRLVDQETGAEI 699 >gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium vulgare Y25] gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium vulgare Y25] Length = 713 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/707 (53%), Positives = 508/707 (71%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG+IARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNQIKKSIQWGDETLTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RPTE E LISR+IDR RPLF + +K+E V+ V+ H Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V Y NG Y LNP +DE + Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNKSEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSED +L A++F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D S L ++ + ED+R + I K R ID K+ + + E + + + + Sbjct: 241 PADTSALLAAVTALGGEDMRAAFAIRTKQDRVAAIDAAVAKIKAGLTEEQLA--DSSLGA 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 V + +++ V+R+ ++ R+DGR + VR I ++ GLL R HGS+LF RG+TQ +VV T Sbjct: 299 VIKQLESDVLRSDIVKHGRRIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471 P FPYT+R+VSEITES+GSSSMA+VCG SL+++DAGVP+ PVAG+AMGLV KDG Sbjct: 419 PANTDFPYTIRVVSEITESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLEKDG- 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QA+ GRLHI Sbjct: 478 SWAVLTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMRKALAQARTGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K L+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMAKSLTTAN-AFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+KIASS+ I+ A +MI SI PE+N IYKG VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 TIKIASSNGEAIKKAYDMIWSIVAEPEINGIYKGTVVKLVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG VWVKLL FDDRGK++LSMK+VDQ TG+ I Sbjct: 657 IENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKIVDQATGEEI 703 >gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp. TrichCH4B] gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp. TrichCH4B] Length = 712 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V T ++W L LETG++ARQ+DG V+AT GET V+A V Y R K GQDFFPLT Sbjct: 1 MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+ Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + +E +R + I +K R + K+++++ + E +G + S Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQR--EDGNLSS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR + VR I Q GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +D Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHIL Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K L+E+ + + PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 GEMAKSLTEAS-EFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS++ I+ A +MI +I PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASANGEAIQKAYDMIYAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704 >gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040] gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040] Length = 711 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V T ++W L LETG++ARQ+DG V+AT GET V+A V Y R K GQDFFPLT Sbjct: 1 MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+ Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + +E +R + I +K R + K+++++ + E +G + S Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQQ--EDGNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR + VR I Q GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV + D Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHIL Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K L+E+ + + PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 GEMAKSLTEAS-EFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS++ I+ A +MI +I PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASANGEAIQKAYDMIHAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704 >gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans 621H] gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans 621H] Length = 716 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/701 (55%), Positives = 518/701 (73%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD EIEWAGRPL LETG++ARQ+DGAV+ TYG+TVVL T V +S+K GQDFFPLT Sbjct: 1 MFDYFRKEIEWAGRPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE RP+E E+L +R+IDR IRPLF + ++NE Q+ V+ + Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ P +VS++ SAAL LSG+PF GPV A++ I+G+ V+NP DE + S LDL V+ Sbjct: 121 DNENDPALVSLIGCSAALTLSGIPFFGPVACARIGRIDGKLVVNPTHDEIKDSTLDLMVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237 GT + VLMVE EA++LSE+ +L+A+ GH +PVI+AI LA+ AK P + S K+ Sbjct: 181 GTAEGVLMVESEASELSEETMLEAVTLGHTSFQPVIDAIIALAEHAAKAPWDLPSLTKEE 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L + + ++ + + + +K R K++ + K ++ + E + + ++ Sbjct: 241 IALRKRVEKVGNKLMADAYKERQKQARYKKVAEAKDRINEILADEGLDVELAK--PMLKE 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A+VVR +L +R+DGRD +TVR I A+VG+L R HGSSLF RG+TQA+VV TLGT Sbjct: 299 LEAQVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTG 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D+L G R++FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 359 QDEQIIDALEGEYRSNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLLPSKE 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+ + +LS Sbjct: 419 AFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGYAVLS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+TA+QMD+KI I+ IM +AL+QA+ GR+HIL EM+K Sbjct: 479 DILGDEDHLGDMDFKVAGTADGVTALQMDIKITSITPEIMKIALEQAREGRIHILGEMAK 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+E R ++ P++ +++P ++IR+VIG GGKVIR IVE +GAKV+I DDGTV IA+ Sbjct: 539 ALTEGRGEVSGNAPKITTISVPKEKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTVTIAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S+ + + A I I PE+ +IY+G+VVK DFGAFV+F G RDGLVHIS+L+ RV Sbjct: 599 SNDEQAQKAIARIEGIVAEPEIGRIYEGKVVKTADFGAFVNFLGPRDGLVHISELAEGRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 AKTSDVVK+GD V VK++ FDDRGK+KLSM+VVDQ TG I Sbjct: 659 AKTSDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQATGADI 699 >gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus SB 1003] gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus SB 1003] Length = 717 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/704 (53%), Positives = 507/704 (72%), Gaps = 12/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V I+W G L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNVTKKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RP+E E L+SR+IDR RPLF +KNE V+ V+ Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPSEKETLVSRLIDRPCRPLFVPGFKNEVLVMATVLSC 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V + +G YVLNP +D+ + Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLRDNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +L+ED +L A+ FGH + +PVI+ I LA+ AKEP D Sbjct: 181 LDLVIAGTKDAVMMVESEAYELTEDEMLGAVKFGHEQMQPVIDLIIALAEDAAKEPFHFD 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIV 292 D+S L + + + ++R + + +K R I + S S E + N G + Sbjct: 241 PPDYSALLDRVKAAGEAEMRAAFALRDKQERSNAISATVDLIKSKLSEEDLADINLGSAI 300 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 E + ++R +++ R+DGRD++TVR I A+VG+L RTHGS+LF RG+TQ +VV Sbjct: 301 KALE---SGILRGDIINGGARIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L+G R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQIIDALNGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILESDG 477 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMQQALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LS R + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALSAGRQEFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 597 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS++ I+ A +MI SI PE KIY+G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 598 VIKIASANAEAIKKAYDMIYSIVAEPEEGKIYRGKVVKLVDFGAFVNFFGKRDGLVHVSQ 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ++ +R+ ++ +KEG VWVKLL FDDRGK++L MK+VDQ TG Sbjct: 658 IAGKRLNHPNEALKEGQEVWVKLLGFDDRGKVRLGMKMVDQETG 701 >gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] Length = 771 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/703 (54%), Positives = 510/703 (72%), Gaps = 7/703 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV V IE G+ L LETGRIARQ+D AVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR +RPLF + + NE VI V+ Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ES P +V+M+AASAAL LSG+PF GP+ A+V Y +G+Y LNP LDE G LDL V+ Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 T +AV+MVE EA +LSEDV+L A++F H K V+ AI LA+ AK+P V + Sbjct: 181 ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLD 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295 L++++ ++I +D+ + + +K R I+ + K ++F+ E S G + + Sbjct: 241 DLKKKLKKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQSVMAG--IKLT 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A++VRT +L + R+DGR + +R I A VG L RTHGS+LF RG+TQAI TLG Sbjct: 299 KKLEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T++ EQ +D L+G FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP Sbjct: 359 TKDAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPS 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F + Sbjct: 419 KEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 +SDI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I +AL+QAK GR HIL EM Sbjct: 479 ISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK LS +R +L PR+E + I +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI Sbjct: 539 SKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +SS + +IEAA++ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ E Sbjct: 599 SSSDINQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNE 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 RV K +DVV EG V VK+L+ D RGK++LSM+VVDQ TG+ + Sbjct: 659 RVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701 >gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides KD131] gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides KD131] Length = 716 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V IEW G L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF +KNE +I+ V+ H Sbjct: 61 VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V + G+YVLNP +D+ Q Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +LSE +L A+ FGH +PVI+ I A+ A EP Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292 D++ L ++ + + +R + I EK R ID + + + S +E + N G Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELADENLG--- 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + F+ +++ ++R +++ R+DGRD++TVR I ++ +L RTHGS+LF RG+TQA+VV Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT EDEQ +D+L G R++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LS + + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS+ A I+ A +MI SI PE +IY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++ +R+ ++V+KEG V VKLL FD+RGK++L MK+VDQ TG+ I Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703 >gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] Length = 716 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/707 (53%), Positives = 504/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV I+W L LETG++ARQ+DG+V+AT GET V+A V + R+ K GQDFFPLT Sbjct: 1 MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+ Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + D+S+L ++ +E +R + I +K R + ++ + + E +G + S Sbjct: 241 APDYSELSAAVAAAGEEQMRAAFAITDKQERTAAVAAAREAIKEALTEEQ--LEDGNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGR + +R I A+ +L RTHGS+LF RG+TQA+ V T Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + Sbjct: 419 PAATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGN 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM K LSE+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 GEMGKALSETN-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS I+ A EMI SI PE +IY G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPDGESIKKAYEMIHSIVAEPEEGQIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704 >gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides 2.4.1] gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides ATCC 17029] gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides WS8N] gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides 2.4.1] gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides WS8N] Length = 716 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V IEW G L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF +KNE +I+ V+ H Sbjct: 61 VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ A+V + G+YVLNP +D+ Q Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +LSE +L A+ FGH +PVI+ I A+ A EP Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292 D++ L ++ + + +R + I EK R ID + + + S +E + N G Sbjct: 241 PPDYAALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELADENLG--- 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + F+ +++ ++R +++ R+DGRD++TVR I ++ +L RTHGS+LF RG+TQA+VV Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT EDEQ +D+L G R++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK LS + + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS+ A I+ A +MI SI PE +IY G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++ +R+ ++V+KEG V VKLL FD+RGK++L MK+VDQ TG+ I Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703 >gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 690 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/689 (54%), Positives = 509/689 (73%), Gaps = 4/689 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V+ EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV + + D+FPL+ Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF +KNE Q++ V+ + Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P ++++ A+SAAL +SG+PF GPV ++V +++G+Y+LNP E + SLDL V+ Sbjct: 121 DKENQPDILAITASSAALAISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE EAN L+E+ +L+A+ FGH PVIE + +LAK C K ++ KD S+ Sbjct: 181 GTKDAVLMVESEANGLTEEEMLNAVKFGHEGFVPVIEMVEELAKECRKPEWTVEKKDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++++ + +DL + +K R QI ++ K F E+ ++++ ++ S ++++ Sbjct: 241 VKQKLEETFTKDLTKAFATRDKQDRSNQISEITDKAKKLFE-ENENYSDLDVNSELKNLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K+VRT +L K R+DGR VR I +VG+L RTHGS+LF RG+TQAIVV TLGT +D Sbjct: 300 KKIVRTDILKNKNRIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ ++SL G QR FM+HYNF P + GE R+G RREIGHG+LA RAI+ LP F Sbjct: 360 EQRIESLDGLQRERFMLHYNFPPFSVGETGRIGT-GRREIGHGKLAWRAINSSLPSKEAF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGTSLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT GIT++QMD+KI GI+ IM AL QAK GR+HIL EM+K L Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALSQAKDGRVHILGEMNKAL 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S SR +G+ TP++E + + I VIG GG IR IVE++GAKV+++D+G V +A+ Sbjct: 539 SASREDVGKHTPKMEQVNVDKKDIAAVIGKGGATIREIVEKSGAKVDVNDEGVVTVAAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A +MI+ IT E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+ +RVAK Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELADKRVAK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +DVVKEGD V VK++ F DRGK+KLSMK Sbjct: 659 VTDVVKEGDEVKVKVIGF-DRGKVKLSMK 686 >gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I] gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I] Length = 703 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/698 (53%), Positives = 504/698 (72%), Gaps = 11/698 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLTV+YQE+ Y Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ HDL + P + Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181 V+M+AASAAL +SG PF GP+ GA+V +++G+YVLNP +D+ Q LDL V+GT Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 ++AV+MVE EA +L+E +L A+ F H + +PVI+ I LA+ AKEP + D+S+L Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEETAKEPFDFQAPDYSELY 240 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + +E +R + I +K R + ++ + + + E + + S + ++A Sbjct: 241 EAVKAAGEEQMRAAFAITDKQERTAAVAAARETIKAALTEEQ--LEDANLGSAMKKLEAG 298 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R ++ R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VLP FPY Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480 T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + +L+DI Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAVLTDIL 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHILNEM K LS Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMGKALS 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS + Sbjct: 539 ETN-EFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASPNG 597 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A +MI SI PE ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 598 DAIQKAYDMIYSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ I Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 695 >gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] Length = 716 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/707 (53%), Positives = 503/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV I+W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ G +V Y NG+YVLNP +D+ Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGCRVGYTNGEYVLNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHQQIQPVIDLIISLAEDAAKEPFEFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L E + +E +R + I +K R + ++ + + + E + + + Sbjct: 241 PPDYSALYEAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQ--LEDPNLGA 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGR + VR I A+ GLL RTHGS+LF RG+TQA+ V T Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D D Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGD 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GRLHIL Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 NEMSK LSE+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 NEMSKALSETS-EFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE KIY G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNAEAIQKAYDMIHSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMK VDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKCVDQETGEEIV 704 >gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2] gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2] Length = 710 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/706 (52%), Positives = 505/706 (71%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLT Sbjct: 1 MFNEVKKSVQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 D+ + P +V+M+AASAAL +SG PF GP+ +V + +G+Y+LNP +D+ + Sbjct: 121 DMVNDPDMVAMIAASAALTISGAPFRGPIAACRVGFEDGEYILNPEIDDMHNLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIIDLAEDCAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +D+S L + ++ +R + I +K R + K ++V S E +G + + Sbjct: 241 PEDYSDLSAAVKAAGEDKMRAAYAITDKQERTAAVTAAKAEIVEALSEEQQ--EDGNLGA 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++KV+R ++ R+DGR +T+R I ++ G+L RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKGLESKVLRGDVVKNGKRIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L+G +++FM+HYNF P + GEV R+ P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV + D + Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDDGE 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GRLHIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMSKALAQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM K L+ ++ + P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMGKALTGAQ-EFSVHAPKIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +K+AS+ I+ A +MI SI PE IYKG+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKLASNDAEAIKKAYDMIHSIVAEPEEGVIYKGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 +R+ SDV+KEG VWVKLL FDDRGK++L+MK+VDQ TG+ I Sbjct: 658 ENKRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLAMKMVDQETGEEI 703 >gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium BAL199] gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium BAL199] Length = 684 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/678 (55%), Positives = 503/678 (74%), Gaps = 7/678 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+DGAV+A YG+TVVL TVV ++ + G DFFPL+V+YQE+TY+ GKIPGG+ +RE Sbjct: 1 MARQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIPGGFFKREG 60 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RPTE E+L SR+IDR IRPLF K +KNETQVI V+ HDLE+ P VV+MV SAAL +SG Sbjct: 61 RPTEKEVLTSRLIDRPIRPLFVKGFKNETQVICTVLAHDLENDPDVVAMVGTSAALCISG 120 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ G +V Y NG+YVLNP +++ + S LDL V+GTQ+ VLMVE A++L+E+V+L Sbjct: 121 VPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQEGVLMVESMASELTEEVML 180 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIP 259 A+ FGH +PVI+AI +LA+ CAK+P+ + + D + L + K D + P Sbjct: 181 GAVTFGHESFQPVIQAIIELAEACAKDPMDLPAPDLDGNGLRGRVEAACKADFEAAYDEP 240 Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319 K R Q K + S E + + + + I++ +VR +L R+DGRD+ Sbjct: 241 NKSER--QNKLAAAKAKAIASLEDPAEADAA-KGLLKGIESDIVRGRILKTGQRIDGRDT 297 Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379 +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT +DEQ VD+L G R +FM+HYN Sbjct: 298 KTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRENFMLHYN 357 Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439 F P + GE RMG+P RREIGHG+LA RA P++P FPYT+R+VSEITES+GSSSMA Sbjct: 358 FPPYSVGEAGRMGSPGRREIGHGKLAWRATRPLMPTKDAFPYTVRVVSEITESNGSSSMA 417 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 TVCG+SLA+MDAGVP+ +P+AGIAMGL+K+G+ F +LSDI GDEDHLG MDFKVAGTD G Sbjct: 418 TVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAVLSDILGDEDHLGDMDFKVAGTDKG 477 Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559 ITA+QMD+KI I++ IM +AL QA+ GRLHIL EM+K L+ +R + + P++ +M IP Sbjct: 478 ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKALTNAREGVSDTAPKMTMMKIP 537 Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619 D+IR VIG GGKVIR I E TGAK++I+DDG+VKI++ + ++AA ++SI PE+ Sbjct: 538 VDKIREVIGSGGKVIREICETTGAKIDIEDDGSVKISAVEQSALDAAYNWVKSIVAEPEI 597 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678 +IY G+VVKV++FG FV+F G +DGLVHISQL + R K +VVKEGD+V VK++ FD Sbjct: 598 GEIYTGKVVKVLEFGCFVNFLGPKDGLVHISQLVADRRPEKVDEVVKEGDSVKVKVIGFD 657 Query: 679 DRGKIKLSMKVVDQNTGK 696 DRGK+KLSMKVVDQ TG+ Sbjct: 658 DRGKVKLSMKVVDQKTGE 675 >gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium EB080_L06A09] Length = 709 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/708 (53%), Positives = 503/708 (71%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG+IARQ+D V+ATYGET VLA V + + K+GQ FFPLT Sbjct: 1 MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF +K+E Q+ + V+ H Sbjct: 61 VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL LSG PF GP+ +V + GQYVLNP D+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I +A+ A EP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEEAANEPFDY 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 S D+S+L + ++++R + + +K R + K ++ S + S + Sbjct: 240 QSPDYSELYSAVKAQGEDNIRSAYALTDKQERTSAVSAAKDSIIDALSEDQVS--DPNFG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + ++++VVR ++ R+DGRD TVR I ++ +L RTHGS+LF RG+TQA+ V Sbjct: 298 TCLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+LSGT R++F++HYNF P + GE RM P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPPATEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM A+ QAK GRLHI Sbjct: 478 EYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMAQAKDGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+ L+E+ E PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G Sbjct: 538 LGEMANALTEAG-SFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIASS+ +IE A+EMI I PEV IY G VVKVMDFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASSNGEQIEKAKEMIMEIAAEPEVGVIYTGTVVKVMDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ ERV SD+VKEG V VKL+ FDDRGK++LSMKV+DQ TG+ I+ Sbjct: 657 MANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEII 704 >gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 690 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/689 (54%), Positives = 508/689 (73%), Gaps = 4/689 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V+ EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV + + D+FPL+ Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF +KNE Q++ V+ + Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++ P ++++ A+SAAL +SG+PF GPV ++V ++G+Y+LNP E + +LDL V+ Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE E + L+E+V+LDA+ FGH PVIE I +LAK C K ++ KD S+ Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++++ + EDL + +K R QI ++ K F+ E ++++ + ++++ Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQERSNQISEISDKAKQLFA-EDENYSDFNVNDELKNLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K+VRT +L K R+DGR VR I +VG+L RTHGS+LF RG+TQAIVV TLGT +D Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ ++SL G R FM+HYNF P + GE R+G RRE+GHG+LA RAI+ LP +F Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIGT-GRREVGHGKLAWRAINSSLPPKEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT GIT++QMD+KI GI+ IM AL+QAK GR+HIL EM+K L Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SESR +GE TP++E + + I VIG GG IR IVE++GAK++++D+G V +A+ Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A +MI+ IT E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D+VKEGD V VK++ F DRGK+KLSMK Sbjct: 659 VTDIVKEGDEVKVKVIGF-DRGKVKLSMK 686 >gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] Length = 713 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/704 (53%), Positives = 509/704 (72%), Gaps = 13/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF ++W L LETG++ARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT Sbjct: 1 MFKEVKKTLQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G YVLNP +D+ DQ Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+ED +L A++F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEDEMLGAVMFAHEQIQPVIDLIIDLAEDAAKEPFEF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S+L + +E ++V+ I +K R + +K ++ + S E + + + Sbjct: 240 TPPDYSELFGVVKAAGEEKMKVAYAISDKQERVAAVAAVKDEIKAGLSEEQLA--DANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++++V+R+ ++ K R+DGR + VR I ++ G+L RTHGS+LF RG+TQA+VV Sbjct: 298 SALKKLESQVLRSDVVVNKRRIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDALQGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGLV + D Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEEDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 SYGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKTALSQAKEGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK +SE+ E PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKAISEAG-SFSEHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS + I+ A +MI +I PE +YKG+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASPNGEAIQKAYDMIYAIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + R+ SDV+KEG V+VKLL FDDRGK++L+MK+VDQ TG Sbjct: 657 IENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700 >gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] Length = 781 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/701 (53%), Positives = 507/701 (72%), Gaps = 3/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV V IE G+ L LETGRIARQ+D AVLATYGETVVL V +S+K+GQDFFPLT Sbjct: 1 MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR IRPLF + + NE VI V+ Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ES P +V+M+AASAAL LSG+PF GP+ A+V Y +G+Y LNP LDE G LDL V+ Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 T AV+MVE EA +LSEDV+L A++F H K ++ AI LA+ AK+P V D Sbjct: 181 ATGSAVMMVESEAKELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED 297 L++++ ++I +D+ + + +K R +++ + K + F ++ + + + + Sbjct: 241 DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTKK 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VR +L R+DGR + +R I A VG L RTHGS+LF RG+TQ+I TLGT+ Sbjct: 301 LEAEIVRGAILKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTK 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + EQ +D L+G +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP Sbjct: 361 DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F +LS Sbjct: 421 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I +AL+QAK GR HIL EMSK Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 LS +R +L PR+E + I +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S Sbjct: 541 ALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A+IEAA++ I I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ ERV Sbjct: 601 SDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K +DVV EG V VK+L+ D RGK++LSM+VVDQ TG+ + Sbjct: 661 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701 >gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2] gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2] Length = 711 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/707 (52%), Positives = 507/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V I+W G L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNVTRKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF +KNE +I+ V+ H Sbjct: 61 VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +++M+AASAAL +SG+PF GP+ A+V + G YVLNP +++ Q Sbjct: 121 DLVNEPDILAMIAASAALTISGVPFMGPIGAARVGFSKGAYVLNPDVEDMQKLRENPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL ++GT+DAV+MVE EA +LSED +L A+ FGH +PVI+ I A+ CAKEP Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEDEMLGAVKFGHEAMQPVIDLILDFAEDCAKEPFDFA 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + + +R + I +K R ID + + + E + + + S Sbjct: 241 PPDYSALYAAVKAAGETQMRAAFAIRDKQDRTNAIDAASAAIKAALTDEQKA--DENLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ ++R +++ R+DGRD++TVR I+++ G+L RTHGS+LF RG+TQ +V+ T Sbjct: 299 AIKKLESSILRGDIINGGARIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT EDEQ +D+L G R++F++HYNF P + GEV R G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472 P +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 419 PPATEFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGR 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +L+DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GRLHIL Sbjct: 479 FAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMEQALAQAKDGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EMSK L+ + + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 GEMSKALTGPQ-AFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVELSGAKVDINDDGV 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIASSS I+ A ++I SI PE+ +IY G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASSSAEAIKKAYDLIWSIVAEPEIGQIYTGRVVKLVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 +++R+ ++ +KEG V VKLL FDDRGK++L MK+VDQ TG I Sbjct: 658 ASKRLQHPNEYLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGAEIT 704 >gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 692 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/688 (54%), Positives = 495/688 (71%), Gaps = 5/688 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+++ G+ L LETGR+ARQ+DGAVL T GET+VL T V R LK GQDFFPLTVNYQE+ Sbjct: 7 EVDFGGQRLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNYQEKA 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D E+ P Sbjct: 67 YAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + +M+ ASAAL +SG+PF+GP+ A+V Y++G +VLNP + LDL V+GT+ AVL Sbjct: 127 IPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE EA +L E +L A++FGH +PVI I +LA K P + + L+E ++ Sbjct: 187 MVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPALQEAIT 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVR 304 Q LR + + EK R K++D+++ ++ F S+ + ++V V + ++ ++VR Sbjct: 247 QAALAPLREAYGLVEKQARSKRLDEIRSSLLEQFGG--SAGEQADVVRGVVKKLETQIVR 304 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +LD R+DGRD TVR I +VG++ RTHGS+LF RG+TQA+V+ TLGT+ DEQ VD Sbjct: 305 GRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVD 364 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G R+ FM+HYNF P +TGE +G+P RREIGHGRLA+RA+ VLP ++FPY+LR Sbjct: 365 ALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSESEFPYSLR 424 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 IVSEI ES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+KDG+ + +L+DI GDED Sbjct: 425 IVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTDILGDED 484 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT++G+TA+QMD+KI GI+ IM AL+QA GRLHIL++M+ VL++ R Sbjct: 485 HLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAVLAQGRS 544 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 QL + PR+ M I PD+IR+VIG GGKVIR + E+TGA ++I DDGTV IAS + E Sbjct: 545 QLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDDGTVTIASVNGEAGE 604 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AAR I +T EV IY G+V K+MDFGAFV RDGL+HISQ+STERV D V Sbjct: 605 AARRRIELLTADVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHISQISTERVNDVHDYV 664 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 KEG +V VK+L+ D +GKIKLSMK + Q Sbjct: 665 KEGQSVRVKVLEVDRQGKIKLSMKDIAQ 692 >gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11] gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11] Length = 705 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/695 (53%), Positives = 498/695 (71%), Gaps = 11/695 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++W L LETG++ARQ+DG V+AT GET V+A V + + K GQDFFPLTV+YQE+ Y Sbjct: 1 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ HDL + P + Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181 V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+ Q LDL V+GT Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFTDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 ++AV+MVE EA +L+E +L A+ F H + +PVI+ I LA+ AKEP + D+S+L Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEEAAKEPFDFQAPDYSELY 240 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + + ++R + I +K R + ++ + + S E + + S + ++A Sbjct: 241 EAVKAAGETEMRAAFAITDKQERTAAVAAARETIKAALSEEQ--LEDANLGSAMKKLEAG 298 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R ++ R+DGRD+ TVR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DEQ Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQ 358 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VLP FPY Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480 T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + ILSDI Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL EMSK LS Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKALS 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+ Sbjct: 539 ETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASADG 597 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A +MI SI PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 598 TAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETG 692 >gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales bacterium HTCC2654] Length = 716 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/704 (52%), Positives = 507/704 (72%), Gaps = 12/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG++ARQ+DG V+AT GET V+A V + + K+GQDFFPLT Sbjct: 1 MFNEVKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF + +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G+YVLNP D+ DQ Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDLRNNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHEQIQPVIDLIIDLAEDSAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + D+S + E + ++ +R + I +K R + K+++ + + E + + + Sbjct: 240 AAPDYSAIFEAVKAAGEDKVRAAYAITDKQERVAAVAAAKEEIKASLTEEQLA--DPSLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +++ V+R ++ + R+DGR + VR I A+VGLL RTHGS+LF RG+TQ +VV Sbjct: 298 TALKKLESSVLRGSVVKEGKRIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L+GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDALTGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDA VP+ PVAG+AMGLV +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HI Sbjct: 478 SYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K LS R + PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMNKALSAGRTEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 597 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS + I+ A +MI +I PE ++YKG+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 598 VIKIASPNNDSIQKAYDMIHAIVAEPEEGQVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQ 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + R+ SDV+KEG V+VKLL FDDRGK++L+MK+VDQ TG Sbjct: 658 IENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 701 >gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter ubique HTCC1062] gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1062] Length = 690 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/689 (54%), Positives = 508/689 (73%), Gaps = 4/689 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V+ EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV + + D+FPL+ Sbjct: 1 MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF +KNE Q++ V+ + Sbjct: 61 VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++ P ++++ A+SAAL +SG+PF GPV ++V ++G+Y+LNP E + +LDL V+ Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE E + L+E+V+LDA+ FGH PVIE I +LAK C K ++ KD S+ Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++++ + EDL + +K R QI ++ K F+ + + +++ + ++++ Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLFADDEN-YSDFNVNDELKNLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K+VRT +L K R+DGR VR I +VG+L RTHGS+LF RG+TQAIVV TLGT +D Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ ++SL G R FM+HYNF P + GE R+G RRE+GHG+LA RAI+ LP +F Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIGT-GRREVGHGKLAWRAINSSLPPKEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT GIT++QMD+KI GI+ IM AL+QAK GR+HIL EM+K L Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SESR +GE TP++E + + I VIG GG IR IVE++GAK++++D+G V +A+ Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A +MI+ IT E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D+VKEGD V VK++ F DRGK+KLSMK Sbjct: 659 VTDIVKEGDEVKVKVIGF-DRGKVKLSMK 686 >gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1] gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1] Length = 706 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/704 (52%), Positives = 509/704 (72%), Gaps = 11/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EI+W L LETGR+ARQ+DG+V+AT GET V+A V + +S K G DFFPLT Sbjct: 1 MFNIVKKEIQWGEETLTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNET V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNETLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+M+AASAAL +SG PF GP+ G +V + +G+Y+LNP +D+ + Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGFEDGEYILNPEIDDMHDLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E +L A+ F H+ +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHDSIQPVIDLIIDLAEDAAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + D+S+L E + ++ +R + I +K R + +K+ + S E + + + Sbjct: 241 APDYSELFEAVKAAGEDKMREAYAITDKLERQAAVSAVKEGVKEGLSEEQ--LEDPNLSA 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R+ ++ R+DGR + VRDI ++ +L RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLESTVLRSDVVKNGRRIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +D Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI++ IM AL+QAK GRLHIL Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITQEIMEKALEQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K ++E+ + E PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 AEMAKAVTEAG-EFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE KIYKG+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGDSIQKAYDMIHSIVAEPEEGKIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 ER+ SDV+ EG VWVKLL FDDRGK++L+MK+V+Q TG+ Sbjct: 658 KNERLNHPSDVLSEGQEVWVKLLGFDDRGKVRLAMKMVNQETGE 701 >gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi DSS-3] gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3] Length = 714 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/707 (52%), Positives = 506/707 (71%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV T ++W L LE+G+IARQ+DG+V+AT GET V+A V + R K GQDFFPLT Sbjct: 1 MFDVTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ G +V Y++G+YVLNP +D+ Q Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E +L A+ F H + +PV++ I A+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + +E +R + I +K R + ++ + + + E + +G + S Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQLA--DGNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGL+ +D Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K LS + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 AEMNKALSGA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704 >gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] Length = 710 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/704 (52%), Positives = 501/704 (71%), Gaps = 11/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG+IARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT Sbjct: 1 MFNETKKSIQWGEETLTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+YVLNP +D+ QG Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYVLNPTVDDMQGLRNNPDQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV++ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVVDLIIDLAEDSAKEPFDFS 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L E + +E +R + I +K R I K ++ + + E + + + Sbjct: 241 PPDYSALYEAVKAAGEEKVRAAYAISDKQERVAAISAAKDEIKASLTEEQ--LEDPNLGT 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR + VR I ++ +L RTHGS+LF RG+TQA+VV T Sbjct: 299 ALKKLESAVLRGDVVKNGRRIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L G R++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +D Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL+QAK GR+HIL Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALEQAKAGRMHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K ++E+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 539 GEMAKAITEA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE K+YKG VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGEAIQKAYDMIYSIVAEPEEGKVYKGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 +R+ SD +KEG VWVKLL FDDRGK++LSMKVVDQ TG+ Sbjct: 658 ENKRLNHPSDALKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGE 701 >gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens ISM] gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens ISM] Length = 713 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/707 (52%), Positives = 505/707 (71%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNEVKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP +D+ DQ Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYILNPTVDDMHELRSNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV++ I LA++ AKEP Sbjct: 180 RLDLVVAGTRDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVVDLIIDLAEVAAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + D+S L + ++++R + I +K R + + + + + E + + Sbjct: 240 QAPDYSDLYAAVKAAGEKEMRAAFAITDKQERTAAVAAARTAIKAALTEEQ--LEDANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGRD+ TVR I ++ GLL RTHGS+LF RG+TQ +VV Sbjct: 298 SALKKLEASILRGDVVKGGKRIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ++D+L GT +++F++HYNF P + GE R+G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQFIDALHGTFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 DF IL+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+ IM AL QAK GRLHI Sbjct: 478 DFAILTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKQALAQAKDGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EMSK L+E+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMSKALTEAS-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS + I+ A +MI SI PE ++Y G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASPNGEAIQKAYDMIHSIVAEPEEGQVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ I Sbjct: 657 IENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEI 703 >gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HIMB114] gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HIMB114] Length = 692 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/689 (53%), Positives = 506/689 (73%), Gaps = 3/689 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EI WAG+ L +ETG+IARQ+DGAV+ +G+TV+++T V + DFFPLT Sbjct: 1 MFNIVKKEINWAGKNLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF ++NETQV+ V+ + Sbjct: 61 VNYQEKFYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E P +++++A+SAAL +SGLPF+GPV ++V I+G+++LNP + + S L+L V+ Sbjct: 121 DKECDPDILAVIASSAALSISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA+ L+E +LDA+ FGH PVI I +LAK +K I+SKDFS+ Sbjct: 181 GTKEAVLMVESEASGLTEAQMLDAVKFGHENFLPVINLIEELAKEASKPKWEIESKDFSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L+ ++S +K+ L + +K R I + +K+ F + + + + +I + ++ Sbjct: 241 LKSKISSEVKDHLVKAFSEKDKKQRSSMISEANEKVEKLFEGDET-YTKVQIKDQLKSLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VRT +L +K R+DGR + VRDI +VG++ R HGSSLF RG+TQAIV TLGT +D Sbjct: 300 KDIVRTKILKEKSRIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +SL G Q++ FM+HYNF P + GEV R+G RREIGHG+LA RAI+ LP+ F Sbjct: 360 EQRFESLEGMQKSRFMLHYNFPPFSVGEVGRVGGTGRREIGHGKLAWRAINAALPKHEDF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+RIVS+ITES+GSSSMATVCGSS+ALM AGVPI KP+AGIAMGL+K+G++F +LSDI Sbjct: 420 PYTIRIVSDITESNGSSSMATVCGSSMALMHAGVPIEKPIAGIAMGLIKEGNEFSVLSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GIT++QMD+KI GI+ IM AL+QAK+GRL ILNEM+K + Sbjct: 480 LGDEDHLGDMDFKVAGSADGITSLQMDIKINGITFEIMEKALEQAKKGRLDILNEMAKAI 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 ES +L ++TPR+E + + I VIG GG IR IVE +GAKV+I+D G V ++++ Sbjct: 540 KESNKELSQYTPRMEKIQVDKKDIATVIGKGGANIREIVEVSGAKVDINDSGEVTVSAAD 599 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A +MI S+ + PEV KIY G+VVK+MDFGAFV+F G +DGLVHISQL+ +RV K Sbjct: 600 QETRDKAIQMINSLVEKPEVGKIYSGKVVKIMDFGAFVNFLGKQDGLVHISQLAEKRVEK 659 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDVVKEGD V VK++ F DRGK+KLS+K Sbjct: 660 VSDVVKEGDEVNVKVIGF-DRGKVKLSIK 687 >gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] Length = 705 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/698 (52%), Positives = 498/698 (71%), Gaps = 11/698 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLTV+YQE+ Y Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ HDL + P + Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181 V+M+AASAAL LSG PF GP+ GA+V + +G+YVLNP +D+ Q LDL V+GT Sbjct: 121 VAMIAASAALTLSGAPFMGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 +DAV+MVE EA +LSE +L A+ F H + +PV++ I LA+ A EP + D+S L Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVVDLIISLAEEAANEPFEFAAPDYSDLY 240 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + + ++R + I +K R + ++ + S E + + S + ++A Sbjct: 241 EAVKAAGETEMRAAFAISDKQERTAAVAAARETIKGALSEEQ--LEDANLGSALKKLEAG 298 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R ++ R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ Sbjct: 299 ILRGDVVKTGKRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++D+L G +++F++HYNF P + GEV R+G P RREIGHG+LA RA+ VLP FPY Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480 T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + ILSDI Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+ IM AL QAK GRLHIL EM+K L+ Sbjct: 479 GDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKALT 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E+ + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS++ Sbjct: 539 EAS-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASANG 597 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A +MI +I PE IY G+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 598 EAIQKAYDMIHAIVAEPEEGAIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SDV+KEG V VKLL FDDRGK++LSMK+VDQ TG+ I Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 695 >gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b] gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b] Length = 712 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/704 (53%), Positives = 499/704 (70%), Gaps = 19/704 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF ++W L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 2 MFKEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +K+E V+ V+ H Sbjct: 62 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSH 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP R + DQ Sbjct: 122 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYSDGEYILNPDVEDMHDLRNNPDQ- 180 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +LSED +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 RLDLVVAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDTAKEPFDF 240 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S L + + ++ +R + I +K R + K+ + + S E + + Sbjct: 241 SPPDYSALYDAVKAAGEDKVRAAYAITDKQERTAAVSAAKEAIKASLSEEQ--LEDPNLG 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A V+R ++ R+DGR +TVR I ++ GLL RTHGS+LF RG+TQA+VV Sbjct: 299 SALKKLEASVLRGDVVKTGKRIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVT 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L G R++F++HYNF P + GE R+G P RRE+GHG+LA RA+ V Sbjct: 359 TLGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREVGHGKLAWRALQAV 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 419 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+ IM AL QAK GRLHI Sbjct: 479 EYAVLTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKKALAQAKDGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LNEMS L+E+ G+F+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+ Sbjct: 539 LNEMSNALTEA----GDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 594 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+G +KIAS + I+ A EMI SI PE IYKG VVK++DFGAFV+F G RDGLVH Sbjct: 595 DEGIIKIASPNSEAIQKAYEMIHSIVAEPEEGGIYKGTVVKIVDFGAFVNFFGKRDGLVH 654 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +SQ+ R+ SDV+KEG VWVKLL FDDRGK++LSMK+VDQ Sbjct: 655 VSQIENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKLVDQ 698 >gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] Length = 712 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/707 (53%), Positives = 498/707 (70%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V ++W L LETG++ARQ+DG V+AT GET V+A V + R K GQDFFPLT Sbjct: 1 MFNVTKKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL LSG PF GP+ A+V + G+YVLNP RL+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S+L + +E +R + I +K R + ++ + + S E + + Sbjct: 240 QPADYSELFAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQ--LEDANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGR + VR I ++ G+L RTHGS+LF RG+TQA+ V Sbjct: 298 SALKKLEAGILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + ILSDI GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+ IM AL QAK GRLHI Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K LSE+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 538 LGEMAKALSETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS+ I+ A +MI SI PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASADGTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG V VKLL FDDRGK++LSMK+VDQ TG+ I Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 703 >gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] Length = 773 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/697 (52%), Positives = 495/697 (71%), Gaps = 3/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ V IEW G+ L LETG++ARQ+DGAV+AT GETVVL V +++K+GQDFFPLT Sbjct: 1 MFNTKKVAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ + G+IPGG+ +RE TE E LISR+IDR IRPLF + + NE I V+ + Sbjct: 61 VHYQEKFSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D E+ P +++M+AASAAL +SG+PF GP+ A+V Y NG+Y LNP E +G LDL V+ Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T DAV+MVE EA +LSE+V+L A++F H VIEAI LA+ AK+P ++ D K Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASGQVIEAIIDLAEQAAKDPWELNVGDDQK 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++ E+ +++ +D+ + + +K R + + + K + ++ + + + + + Sbjct: 241 AVKAELKKLVGKDITAAYKLTDKQARQTALGEARAKAKAA-MADRTPQEQLAAAKLVKKL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A++VRT +L R+DGR + +R I ++V L R HGS+LF RG+TQ I TLGT++ Sbjct: 300 EAEIVRTAILKDGRRIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKD 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 EQ +D L+G FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP + Sbjct: 360 AEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+ S+ITES+GSSSMATVCG SL+LMDAGVP+ +PV+GIAMGL+ +G D+ ILSD Sbjct: 420 FPYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAILSD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT GIT MQMD+KI GI++ I AL QAK GR HIL EM+K Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L E+R +L PR+E M I +IR+VIG GGKVIR IV TGAKV+IDD+G +KI+SS Sbjct: 540 LGETRTELSAHAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISSS 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A+IEAA I+ I + EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ ERV Sbjct: 600 DSAQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 K SDV+ EG V VK+L+ D RGK++LSM+VVDQ TG Sbjct: 660 KVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETG 696 >gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 695 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/695 (55%), Positives = 509/695 (73%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EI W + L LETGR+ARQ+DGAV+ T GETV+LAT V + K DFFPLT Sbjct: 1 MFNITKKEITWGDKKLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE+RPTE E LISR+IDR IRPLF ++NETQV+ V+ + Sbjct: 61 VNYQEKYYAAGKIPGGYFKREARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ P ++++A+SAAL +SG+PF GPV A+V I+G++VLNP ++ + S L+L V+ Sbjct: 121 DKENDPEALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQLELIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE EA+ LSE +LDA+ FGH++ K VI I AK KE I+ KD+S+ Sbjct: 181 GTEDAVLMVESEASGLSEKQMLDAVKFGHDKAKEVINLIKDFAKEAGKERWKIEEKDYSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L+E++S + +DL+ + +K +R I K K+ + F + + +++ EI F+ ++ Sbjct: 241 LKEKISSAVADDLQKAFDESDKQIRTGLIAAAKDKVTAMFEGDET-YSKVEIGDQFKSVE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K+VRT +L R+D R VRDI +VG+L + HGSSLF RG+TQA+VV TLGT +D Sbjct: 300 KKIVRTQILKDSKRIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +++L G +R+ FM+HYNF P + GEV R+G RREIGHG+LA RAI+ LP +F Sbjct: 360 EQRLETLDGAERSRFMLHYNFPPYSVGEVGRIGT-GRREIGHGKLAWRAINSSLPSKEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI P+AGIAMGL+K+GDD+ ILSDI Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGDDYSILSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT GIT++QMD+KI GI+ +IM AL QAK GR+HIL EM+K L Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFDIMEKALDQAKEGRIHILGEMAKAL 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 +ESR +L + TP++E + + I VIG GG IR IVE +GAK++I+DDG V IA++ Sbjct: 539 TESRKELSKNTPKMERIQVDKKDIAAVIGKGGATIREIVELSGAKLDINDDGMVTIAAAD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A +M++ I PE+ KIYKG+VVK+M+FGAFV+F G +DGLVHISQL+ +RV Sbjct: 599 EESRMKAVQMVKDIVAKPEMGKIYKGKVVKIMEFGAFVNFLGKQDGLVHISQLAAKRVEN 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 SDVVKEGD V VK++ F DRGK+KLSMK V ++T Sbjct: 659 VSDVVKEGDEVSVKVVGF-DRGKVKLSMKEVTEDT 692 >gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium HTCC2083] gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium HTCC2083] Length = 713 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/706 (51%), Positives = 502/706 (71%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V IEW L LETG++ARQ+DG V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNVTKKSIEWGDDTLTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL++ P ++M+AASAAL +SG PF GP+ A+V +++G+Y LNP +D+ Q Sbjct: 121 DLDNDPDTLAMIAASAALTISGAPFMGPIACARVGFVDGEYTLNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE +L A+ F H + +PVI+ I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHEQIQPVIDLIVDLAEDCAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S+L ++ ++D+R + I +K R ++D + + + E + + + S Sbjct: 241 PADYSELSAAVAAAGEKDMRAAFAITDKQERTTAVNDARAVIKDALTEEQLA--DANLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGRD+ T+R I ++ GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 AMKGLEAGILRGDVVKTGKRIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++DSL G +++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDSLHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGL+ + D Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLIMEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ +IM AL QAK GR+HIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPDIMEKALAQAKDGRMHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM K + ++ + PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMGKAIDGAQ-EFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGESIKKAYDMIYSIVAEPEEGMVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQATGEEV 703 >gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] Length = 710 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/707 (52%), Positives = 500/707 (70%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF I+W L LETG++ARQ+DG V+ATYGET V+A V + + K GQDFFPLT Sbjct: 1 MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF +KNE VI V+ H Sbjct: 61 VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ +V + +G Y+LNP +D+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEDGDYILNPEMDDMHKLRENPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKEPFNF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + D+S L + ++ ++ +R + I +K R + D + + + S E + + Sbjct: 240 SAPDYSDLSKAVAAAGEKQMRAAFAISDKQERTTAVSDARTAIKAALSEEQ--LGDENLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGR ++ +R+I ++ G+L RTHGS+LF RG+TQ +VV Sbjct: 298 SALKKLEASILRGDVVKTGKRIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +DSL G +++F++HYNF P + GEV R G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDSLQGMYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMEDSG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GR+HI Sbjct: 478 EYAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMKEALAQAKVGRIHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K +S S + E P++E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 538 LGEMNKAMS-STGEFSEHAPKIETMQVPVDKIREVIGSGGKVIREIVEVSGAKVDINDEG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIASS+ I+ A +MI SI PE +Y G VVK++DFGAFV+F G +DGLVH+SQ Sbjct: 597 IIKIASSNAEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703 >gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] Length = 710 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/711 (52%), Positives = 502/711 (70%), Gaps = 19/711 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +EW L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT Sbjct: 1 MFNEVKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF +KNE +I V+ H Sbjct: 61 VHYGEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLLICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ A+V + G+YVLNP +D+ DQ Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAAARVGFTEGEYVLNPSIDDMHKLRDNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +LSE +L A+ F H+ +PVI+ I LA+ CAKEP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEAEMLGAVRFAHDSFQPVIDLIIDLAEDCAKEPFAY 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 DFS+L ++ ++D+R + + +K R + + + + + E + + Sbjct: 240 APADFSELSTAVAAAGEKDMRAAFALTDKQERTSAVSAARDVIKAALTDEQ--LEDANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGRD+ T+R I ++ G+L RTHGS+LF RG+TQ +VV Sbjct: 298 SALKKLEAGILRGDVVKTGKRIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+L GT +++FM+HYNF P + GEV R G RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDALHGTYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GR+HI Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMEKALAQAKDGRMHI 537 Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 L EM+K LS + G+F+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+ Sbjct: 538 LGEMNKALSGA----GDFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+G +KIAS + I+ A +MI SI PE IY G+VVK++DFGAFV+F G RDGLVH Sbjct: 594 DEGVIKIASPNGDSIKKAYDMIHSIVAEPEEGVIYDGKVVKIVDFGAFVNFFGKRDGLVH 653 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 +SQ+ R+ SDV+KEG V VKLL FDDRGK++L+MK+VDQ TG IV Sbjct: 654 VSQIENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLAMKMVDQETGLEIV 704 >gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] Length = 704 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/699 (53%), Positives = 494/699 (70%), Gaps = 13/699 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++W L LETG++ARQ+DG V+AT GET V+A V + R K GQDFFPLTV+YQE+ Y Sbjct: 1 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ HDL + P + Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQGSLDLFVSG 180 V+M+AASAAL LSG PF GP+ A+V + G+YVLNP RL+ DQ LDL V+G Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQ-RLDLVVAG 179 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T+DAV+MVE EA +L+E +L A+ F H + +PVI+ I LA+ AKEP D+S+L Sbjct: 180 TKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQPADYSEL 239 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + +E +R + I +K R + ++ + + S E + + S + ++A Sbjct: 240 FAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQ--LEDANLGSALKKLEA 297 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++R ++ R+DGR + VR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DE Sbjct: 298 GILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDE 357 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q++D+L G +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VLP FP Sbjct: 358 QFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFP 417 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDI 479 YT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + ILSDI Sbjct: 418 YTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDI 477 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+ IM AL QAK GRLHIL EM+K L Sbjct: 478 LGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKAL 537 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SE+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+ Sbjct: 538 SETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASAD 596 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I+ A +MI SI PE +Y G+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 597 GTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNH 656 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SDV+KEG V VKLL FDDRGK++LSMK+VDQ TG+ I Sbjct: 657 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 695 >gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter denitrificans OCh 114] gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter denitrificans OCh 114] Length = 711 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/706 (51%), Positives = 501/706 (70%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ IEW L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+Y+LNP +D+ Q Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE +L A+ F H+ +PV++ I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAKEPFDFS 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S+L + + ++R + I +K R + ++ +++ S E + + S Sbjct: 241 PPDYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQK--EDPNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGR ++ +RDI + GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL+QAK GR+HIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K ++ ++ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMAKSITGAQ-DFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE +Y G VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ I Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 703 >gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] Length = 702 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/696 (52%), Positives = 498/696 (71%), Gaps = 11/696 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLTV+YQE+ Y Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ HDL + P + Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181 V+M+AASAAL LSG PF GP+ A+V + G+YVLNP +D+ Q LDL V+GT Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 +DAV+MVE EA +LSE +L A+ F H+ +PVI+ I LA+ A EP + D+S+L Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVIDLIISLAEEAANEPFEFAAPDYSELF 240 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + ++R + I +K R + ++ + + S E ++ + S + ++A Sbjct: 241 EAVKAAGDTEMRAAFAISDKQERTAAVAAARETIKAALSEEQ--LDDANLGSAMKKLEAG 298 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R ++ R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV TLGT +DEQ Sbjct: 299 ILRGDVVKTGKRIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++D+L G +++F++HYNF P + GEV R+G P RREIGHG+LA RA+ VLP FPY Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480 T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D + ILSDI Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL+QAK GR+HIL EM+K LS Sbjct: 479 GDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKALS 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + + PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS + Sbjct: 539 GA-AEFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKIASPNG 597 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A +MI SI PE KIY G+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 598 DSIKKAYDMIYSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SDV+KEG V VKLL FDDRGK++LSMK++DQ TG+ Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKMIDQETGE 693 >gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 690 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/692 (54%), Positives = 500/692 (72%), Gaps = 13/692 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V R +K GQDFFPLTVNYQE+ Sbjct: 5 EVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKA 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI V+ D ++ P Sbjct: 65 YAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 ++++V ASAAL +SG+PF GP+ A+V YI+G+YVLNP + S LDL V+GT+ AVL Sbjct: 125 ILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQAVL 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241 MVE EA QLSE+++L+A++FGH + +PVIE I LA+ K V D ++ Sbjct: 185 MVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGVQVR 244 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQA 300 E+ + +++E + + EK R K+++D+++ M F S+ + G++V + + I+ Sbjct: 245 EKATPLLQE----AYALTEKQARSKRLEDVQQAMAVEFGSDDA--GRGDMVRGLLKKIET 298 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR +LD R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DE Sbjct: 299 GIVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDE 358 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G R+ FM+HYNF P +TGE +G+P RREIGHGRLA+RAI VLP ++FP Sbjct: 359 QIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFP 418 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y+LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+G F +L+DI Sbjct: 419 YSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDIL 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+ IM ALQQA GRLHIL M+ VLS Sbjct: 479 GDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLS 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS Sbjct: 539 RGRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDG 598 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AA+ I +T +V+ IY G+V K+MDFGAFV RDGL+HISQ+S ERV+ Sbjct: 599 EAGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDV 658 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 D +KEG V VK+L+ D +GKIKLSMK + Q Sbjct: 659 HDHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 690 >gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] Length = 711 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/706 (52%), Positives = 497/706 (70%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V I+W L LETG++ARQ+DG+V+AT GET V+A V Y R K GQDFFPLT Sbjct: 1 MFNVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ G +V Y G Y+LNP +D+ Q Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGYEGGDYILNPTIDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + ++++R + I +K R + ++ + + E + + S Sbjct: 241 PDDYSDLSAAVKAAGEDEMRAAFAIADKQERTAAVAAARETIKGKLTEEQ--LEDKNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++A ++R ++ R+DGR ++ +RDI A+ G+L RTHGS+LF RG+TQ +VV T Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGL+ +D Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMEKALAQAKDGRIHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K LS + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMNKALSGAS-DFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS++ I+ A +MI SI PE +Y G VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASANGDAIKKAYDMIYSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703 >gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 692 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/692 (54%), Positives = 500/692 (72%), Gaps = 13/692 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V R +K GQDFFPLTVNYQE+ Sbjct: 7 EVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKA 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI V+ D ++ P Sbjct: 67 YAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 ++++V ASAAL +SG+PF GP+ A+V YI+G+YVLNP + S LDL V+GT+ AVL Sbjct: 127 ILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241 MVE EA QLSE+++L+A++FGH + +PVIE I LA+ K V D ++ Sbjct: 187 MVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGVQVR 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQA 300 E+ + +++E + + EK R K+++D+++ M F S+ + G++V + + I+ Sbjct: 247 EKATPLLQE----AYALTEKQARSKRLEDVQQAMAVEFGSDDA--GRGDMVRGLLKKIET 300 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR +LD R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DE Sbjct: 301 GIVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDE 360 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G R+ FM+HYNF P +TGE +G+P RREIGHGRLA+RAI VLP ++FP Sbjct: 361 QIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y+LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+G F +L+DI Sbjct: 421 YSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDIL 480 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+ IM ALQQA GRLHIL M+ VLS Sbjct: 481 GDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLS 540 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS Sbjct: 541 RGRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDG 600 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AA+ I +T +V+ IY G+V K+MDFGAFV RDGL+HISQ+S ERV+ Sbjct: 601 EAGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDV 660 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 D +KEG V VK+L+ D +GKIKLSMK + Q Sbjct: 661 HDHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 692 >gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035] gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035] Length = 713 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/707 (52%), Positives = 498/707 (70%), Gaps = 11/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF ++W L LETG+IARQ+DG V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF +K+ET V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+++A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+ + Sbjct: 121 DLVNDPDIVALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV + I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAKEPFNFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + +E +R + I +K R I ++ + + S E + + S Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAIRDKQERTHAISAAREAIKAKLSDEQ--LEDQNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F+ +++ V+R ++ R+DGR + +R I + GLL RTHGSSLF RG+TQA+VV T Sbjct: 299 AFKKLESTVLRGDVVKNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GE R+GAP RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGLV + D Sbjct: 419 PPATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F ILSDI GDEDHLG MDFKVAGT GIT++QMD+K+ GI+ IM AL+QAK GRLHIL Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K LS + + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMNKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ IV Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEIV 704 >gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] Length = 710 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/707 (52%), Positives = 500/707 (70%), Gaps = 13/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF I+W L LETG++ARQ+DG V+ATYGET V+A V + + K GQDFFPLT Sbjct: 1 MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF + +KNE VI V+ H Sbjct: 61 VHYGEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVEGFKNEVLVICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL +SG PF GP+ +V + G Y+LNP +D+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEGGDYILNPEMDDMHKLRENPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I LA+ AK P Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKAPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + D+S L + +++ ++ +R + I +K R ++D + + + S E S + + Sbjct: 240 QAPDYSGLSKAVAKAGEKQMRKAFAIGDKQERTTAVNDARDAIKAALSEEQLS--DENLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV Sbjct: 298 SALKKLEASILRGDVVKTGKRIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +DSLSG +++FM+HYNF P + GEV R G RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDSLSGMYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMQDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GR+HI Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPAIMKEALAQAKVGRVHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K LS S + E PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 538 LGEMNKALS-SASEFSEHAPRIETMQIPVDKIREVIGSGGKVIREIVEMSGAKVDINDEG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIAS + I+ A +MI SI PE +Y G VVK++DFGAFV+F G +DGLVH+SQ Sbjct: 597 IIKIASPNGEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703 >gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] Length = 711 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/706 (52%), Positives = 500/706 (70%), Gaps = 19/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLT Sbjct: 1 MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL +SG PF GP+ +V + +G YVLNP RL+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S L + ++ +R + I +K R + ++ + + + E + + Sbjct: 240 QPVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQ--LEDANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV Sbjct: 298 SALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ++D+L G +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP + FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GR+HI Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHI 537 Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 L EM+K +S + GEF+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+ Sbjct: 538 LGEMNKAISGA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+G +KIAS + I+ A +MI SI PE +Y G VVK++DFGAFV+F G RDGLVH Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVH 653 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +SQ+ R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ T Sbjct: 654 VSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699 >gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] Length = 711 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/706 (52%), Positives = 500/706 (70%), Gaps = 19/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V ++W L LETG++ARQ+DG+V+AT GET V+A V + R K GQDFFPLT Sbjct: 1 MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172 DL + P +V+M+AASAAL +SG PF GP+ +V + +G YVLNP RL+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 180 RLDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDF 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D+S L + ++ +R + I +K R + ++ + + + E + + Sbjct: 240 QPVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQ--LEDANLG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S + ++A ++R ++ R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV Sbjct: 298 SALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ++D+L G +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 LP + FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 418 LPASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL QAK GR+HI Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHI 537 Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 L EM+K +S + GEF+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+ Sbjct: 538 LGEMNKAISGA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+G +KIAS + I+ A +MI SI PE +Y G VVK++DFGAFV+F G RDGLVH Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVH 653 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +SQ+ R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ T Sbjct: 654 VSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699 >gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] Length = 711 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/710 (52%), Positives = 497/710 (70%), Gaps = 17/710 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +EW L LETG++ARQ+DG+V+ATYGET V+A V + + K GQDFFPLT Sbjct: 1 MFKEVKKSVEWGEETLTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF +KNE VI V+ H Sbjct: 61 VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+M+AASAAL +SG PF GP+ +V + +G+Y+LNP LD+ + Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPISACRVGFEDGEYILNPELDDMHDLRNKPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + + I+ I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVKFAHEQIQTPIDLIIALAEECAKEPFDFQ 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + D++ L + ++ +R + I +K R + K + + + E + + S Sbjct: 241 APDYADLFAAVKAAGEDAMRDAYAITDKQERTSAVAAAKDAIKAALTEEQ--LEDENLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR ++ VRDI + GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLESGVLRGDVVKNGKRIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVAT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L G R++FM+HYNF P + GEV R G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQMIDALQGMYRSNFMLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +D D Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGD 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ +IM AL QAK GRLHIL Sbjct: 479 YAILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPDIMEKALAQAKEGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 EM+K +S + GEF+ PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D Sbjct: 539 GEMNKSISSA----GEFSAHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG +KIAS++ I A EMI SI PE +Y G VVK++DFGAFV+F G RDGLVH+ Sbjct: 595 DGIIKIASANADSIAKAYEMIHSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHV 654 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 SQ+ R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG I Sbjct: 655 SQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGAEIT 704 >gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HTCC2255] gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HTCC2255] gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium EB080_L11F12] gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium EB080_L27A02] Length = 709 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/708 (53%), Positives = 502/708 (70%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ I+W L LETG+IARQ+D V+ATYGET VLA V + + K+GQ FFPLT Sbjct: 1 MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF +K+E Q+ + V+ H Sbjct: 61 VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172 DL + P +V+M+AASAAL LSG PF GP+ +V + GQYVLNP D+ DQ Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQ- 179 Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I +A+ A EP Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEDAANEPFDY 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 S D+S+L + ++ +R + + +K R + K ++ S E S + Sbjct: 240 QSPDYSELYSAVKASGEDSIRSAYALTDKQERTSAVAAAKDLIIDALSEEQVS--DANFG 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + ++++VVR ++ R+DGRD TVR I ++ +L RTHGS+LF RG+TQA+ V Sbjct: 298 TCLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVT 357 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT +DEQ +D+LSGT R++F++HYNF P + GE RM P RREIGHG+LA RA+ V Sbjct: 358 TLGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAV 417 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471 LP +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ +D Sbjct: 418 LPPVTEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSG 477 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM A++QAK GRLHI Sbjct: 478 EYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMEQAKDGRLHI 537 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+ L+E+ E PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G Sbjct: 538 LGEMANALTEAG-SFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEG 596 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +KIASS+ +IE A+EMI I PEV +Y G VVKVMDFGAFV+F G RDGLVH+SQ Sbjct: 597 VIKIASSNGEQIEKAKEMIMEIAAEPEVGVVYTGTVVKVMDFGAFVNFFGKRDGLVHVSQ 656 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ ERV SD+VKEG V VKL+ FDDRGK++LSMKV+DQ TG+ I Sbjct: 657 MANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEIT 704 >gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] Length = 711 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/706 (51%), Positives = 497/706 (70%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ IEW L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ G +V Y G+YVLNP +D+ Q Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGCRVGYEGGEYVLNPTVDDMQDLRLNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +LSE +L A+ F H+ +PV++ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDTAKEPFDFA 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S+L + + ++R + I +K R + + +++ + E + + S Sbjct: 241 PADYSELSAAVKAAGETEMRAAFAISDKQERTSAVSAARDTIMAALTDEQK--EDPNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++ ++R ++ R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 AMKGLEGSILRGDVVKTGTRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGL+ + D Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL+QAK GR+HIL Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM+K ++ ++ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMAKAITGAQ-DFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE +Y G VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703 >gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] Length = 712 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/709 (52%), Positives = 501/709 (70%), Gaps = 17/709 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V +EW L LETG++ARQ+DG+V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNVTKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +KNE V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG PF GP+ G +V Y++G YVLNP +++ G Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYVDGDYVLNPDVEDMNGLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I LA+ AKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S L + + + +R + I +K R + K+ + + S E + + S Sbjct: 241 PPDYSALYDVVKAAGEAQMRDAYAITDKQERVAAVAAAKEAIKAGLSEEQ--LEDPNLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR + VR I + GLL RTHGS+LF RG+TQ +VV T Sbjct: 299 ALKKLESTVLRGTVVKDGKRIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L G R++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGLV +D + Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLEDDGE 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL Sbjct: 479 FAILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHIL 538 Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 EM+K ++ GEF+ PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D Sbjct: 539 GEMNK----AQAGTGEFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +G +KIAS + I+ A +MI SI PE +IYKG+VVK++DFGAFV+F G RDGLVH+ Sbjct: 595 EGIIKIASPNGDAIQKAYDMIHSIVAEPEEGQIYKGKVVKIVDFGAFVNFFGKRDGLVHV 654 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SQ+ R+ SDV+KEG V+VKLL FDDRGK++L+MK+VDQ TG+ I Sbjct: 655 SQIENRRLNHPSDVLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEI 703 >gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217] gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217] Length = 713 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/706 (52%), Positives = 495/706 (70%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF ++W L LETG+IARQ+DG V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF +K+ET V+ V+ H Sbjct: 61 VHYQERYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 DL + P +V+M+A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+ + Sbjct: 121 DLVNDPDIVAMIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHNLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV + I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVCDLIISLAEDCAKEPFNFT 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D+S+L + E + + I +K R I ++ + + S E + + + S Sbjct: 241 PPDYSELYAAVKAAGAEQMHAAFAIRDKQERTHAISAAREAIKAKLSEEQLA--DENLGS 298 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F+ +++ V+R ++ R+DGR + +R I + GLL RTHGSSLF RG+TQA+VV T Sbjct: 299 AFKKLESSVLRGDVVKNGNRIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTT 358 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ++D+L G +++F++HYNF P + GE R+G P RREIGHG+LA RA+ VL Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGLV + D Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F ILSDI GDEDHLG MDFKVAGT GIT++QMD+K+ GI+ IM AL+QAK GRLHIL Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM K LS + + PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G Sbjct: 539 GEMDKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIAS + I+ A +MI SI PE K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 R+ SDV+KEG V VKLL FDDRGK++LSMKVVDQ TG+ + Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703 >gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1] gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1] Length = 701 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/706 (50%), Positives = 493/706 (69%), Gaps = 15/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++HT +++ + + LETGR+ARQ++GAV+ TYG+TVVL T V + S++ GQDFFPL+ Sbjct: 1 MFNIHTKSVQFGEKTITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ +A GKIPGG+++RE+RP+E E+L SR+IDR IRPLF K + NETQV+ V+ + Sbjct: 61 VHYQEKFWAAGKIPGGFIKRETRPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + + +++ SAAL LSG+PFEGP+ GA+V +I+G+ VLNP +D+ S LDL V+ Sbjct: 121 DPDYPSDIAALIGCSAALALSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AV MVE E + LSED +LD ++F H +PVI AI +L K EP+ ++ Sbjct: 181 GTRSAVTMVESEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAEAGKPRWVVEPVQVNE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGE 290 +++ ++ + + E + IPEK R + + +K + + S E Sbjct: 241 ALLAEMNDKFAAQVTE----AYAIPEKMARYEAVAQVKAAAMEALGTIEVDGQSVKRSEE 296 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + S+F+ I+++ +R +L K R+DGR +R I+ +V +L R HG++LF RG+TQAI Sbjct: 297 VASLFKKIESRTLRQNVLQGK-RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIA 355 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 VTLGT DEQ V++LSG R+ F ++Y F P GE RMGAP RREIGHG+LA RA+ Sbjct: 356 TVTLGTSRDEQIVETLSGEYRDRFYLNYTFPPYCVGETGRMGAPGRREIGHGKLATRALT 415 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 ++P FPYTLRI SEITES+GSSSMATVCG+ LA+ DAGVPI PVAGIAMGLVK+G Sbjct: 416 AIVPSAEVFPYTLRITSEITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEG 475 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D + +LSDI GDEDHLG MDFKVAG GITA+QMD+KI GI+ IM AL+QA+ GRLH Sbjct: 476 DAYAVLSDILGDEDHLGDMDFKVAGNADGITALQMDIKITGITREIMAKALEQARAGRLH 535 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL EM K ++ R ++ + PR+ M I PD+IR VIG GGKVIR I E+TG ++I+DD Sbjct: 536 ILGEMGKAMTTHRAEMSAYAPRIHTMKIHPDKIREVIGSGGKVIRSITEETGCAIDIEDD 595 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 GT++IASS A E A ++I+SI E ++Y+G+VV++ DFGAFV+ +DGLVHIS Sbjct: 596 GTIRIASSDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHIS 655 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 QL+ RV +DVVKEGD V VK+LD D +G++KL+MK +++ + Sbjct: 656 QLANRRVQNVTDVVKEGDVVTVKVLDVDRQGRVKLTMKEMEEGAAE 701 >gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis SKA53] gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis SKA53] Length = 713 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/706 (51%), Positives = 503/706 (71%), Gaps = 11/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++W L LETG++ARQ+DG+V+AT GET V+A V + +S K GQDFFPLT Sbjct: 3 MFNEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF +KNE V+ V+ Sbjct: 63 VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSF 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173 D + P +++M+AASAAL +SG PF GP+ +V +++G+Y+LNP +D+ + Sbjct: 123 DGVNDPDMIAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTKPEQR 182 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I LA+ CAKEP Sbjct: 183 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHAQIQPVIDLIIDLAEDCAKEPFDFQ 242 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +D+S+L + ++ +R + I +K R + K +++ + + + + + Sbjct: 243 PEDYSELYATVKSAGEDKMRAAYAITDKQERTGAVSAAKADIIAALTEDQRA--DTNLGP 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + +++ V+R ++ R+DGR + +R I ++ G+L RTHGS+LF RG+TQ +VV T Sbjct: 301 ALKKLESAVLRGDVVKHGRRIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ +D+L+G +++FM+HYNF P + GEV R+ P RREIGHG+LA RA+ VL Sbjct: 361 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+ VAG+AMGLV + D Sbjct: 421 PAPTDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDDGS 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ IM AL+QAK GRLHIL Sbjct: 481 YAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMKKALEQAKAGRLHIL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EMSK L+ ++ + P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG Sbjct: 541 GEMSKALTGAQ-EFSVHAPKIETMQIPVDKIREVIGSGGKVIREIVETSGAKVDINDDGV 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +K+AS+ I+ A +MI SI PE K+YKG VVK++DFGAFV+F G RDGLVH+SQ+ Sbjct: 600 IKLASNDAEAIKRAYDMIYSIVAEPEEGKVYKGTVVKLVDFGAFVNFFGKRDGLVHVSQI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 +R+ SDV+KEG VWVKLL FDDRGK++L+MK+VDQ TG+ + Sbjct: 660 ENKRLNHPSDVLKEGQDVWVKLLGFDDRGKVRLAMKMVDQATGQEL 705 >gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus flagellatus KT] gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT] Length = 714 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/685 (51%), Positives = 490/685 (71%), Gaps = 3/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L LETG IARQ+DGAV+ +YG+TVVL +VV R +K+GQDFFPLTV+YQE+TY Sbjct: 8 ITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+ VM D E + Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDADI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ ASAAL +SG+PF GP+ A+V YING+YVLNP + + +LDL V+ T+ AVLM Sbjct: 128 PAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAATESAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA +L EDV+L ++++GH + + VI AI++LA KEP + ++L ++ Sbjct: 188 VESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTELIAKVEA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVVRT 305 + D+ + I K R ++D+++ +++ +E +S +E EI S+F +++AKVVR+ Sbjct: 248 LAGADINEAYKIKSKSARSSKLDEIRSRVLGELITETTSTSEANEIKSIFHNLEAKVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT DEQ +D+ Sbjct: 308 QILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDA 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP +F YT+R+ Sbjct: 368 LQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG L+L+DAGVP+ VAGIAMGL+K+G+ +L+DI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+SGITA+QMD+KI GI+ IM +AL QAK GRLHIL M + + E + Sbjct: 488 LGDMDFKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEAVGEQPQE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L EF PR+ M I P++IR+VIG GG VIR + E+TG ++I++DGT+KI +S E Sbjct: 548 LSEFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAEAGEE 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A++ I +IT EV ++Y G V+K++DFGA V +DGL+HISQ++ +RV +D +K Sbjct: 608 AKKRIEAITAEVEVGQVYDGTVLKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVADFLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 EG V VK+L+ DD+G+++LS K + Sbjct: 668 EGQVVKVKVLEVDDKGRVRLSAKAL 692 >gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas gardneri ATCC 19865] gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas gardneri ATCC 19865] Length = 704 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/697 (51%), Positives = 486/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + L Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKN-TALIN 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + + +K R I +KK ++ + +S W+ E+ F +++ Sbjct: 244 ALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +L+ KVR+DGR +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT D Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ D F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRL+IL EMSK L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSKALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 RL+L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 693 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/685 (52%), Positives = 481/685 (70%), Gaps = 3/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + ETG IARQ+ GAVL +TVVL T V + + G+DFFPLTVNYQERTY Sbjct: 8 FQYGQHTVTFETGEIARQASGAVLVNMADTVVLVTAVGLKDVAQGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI VM + E P V Sbjct: 68 AAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDV 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ASAAL LSGLPF+GP+ A+V Y+NG YVLNP + E + S LDL V+GT+ AVLM Sbjct: 128 PAMLGASAALALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLDLVVAGTEKAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA LSE+V+L A+++GH + + I+ I++LA K + ++ L+E ++ Sbjct: 188 VESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEAGKPAWDWVAPEENVALKEAVAA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQAKVVRT 305 + +L + I EK R +Q++ L+ +V+ ++ E + + ++ F ++ ++VR+ Sbjct: 248 ACEAELTAAYQIAEKQARNQQVNALRDAVVAKLATGEEGAPSAEKVKGAFGALEKRIVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQAIVV TLGT D Q +++ Sbjct: 308 RVLKGEPRIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEA 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G +R FM+HYNF P TGE +G+P RREIGHGRLA+R + V+P A+ PY LR+ Sbjct: 368 IEGERRERFMLHYNFPPFCTGETGMVGSPKRREIGHGRLAKRGVQAVMPGEAECPYVLRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGL+K+GD F ++SDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAVISDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G++A+QMD+KI GI+ IM AL QAK GRLHIL +M+ VLSE R + Sbjct: 488 LGDMDFKVAGSKDGVSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAVLSEPRTE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR + I PD+IR+VIG GG IR + E+TG ++I DDGTVKIAS A + Sbjct: 548 VSAYAPRFTTLKIHPDKIRDVIGKGGATIRALTEETGTSIDISDDGTVKIASVDKAAGDE 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 AR I +T EV +IY+G+VVK+MDFGAFV RDGLVHISQ+S ERV SD + Sbjct: 608 ARRRIEELTADVEVGRIYEGRVVKIMDFGAFVTILPGRDGLVHISQISEERVESVSDRLT 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 EGD V VK+L+ D +G+I+LSMK V Sbjct: 668 EGDLVKVKVLEVDKQGRIRLSMKEV 692 >gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii C-113] gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii C-113] Length = 695 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/691 (51%), Positives = 486/691 (70%), Gaps = 15/691 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE+ RPL LETG IARQ+ GAV+ YGETVVL TVV + +G+DFFPLTVNYQERTY Sbjct: 8 IEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D E+ P + Sbjct: 68 AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSENDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 S++ ASAAL LSG+PF P+ A+V YI+GQYVLNP L + ++ +LDL V+GT+ AVLM Sbjct: 128 PSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVAGTEKAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE EA +L E+++L +++FGH E + VI+ I +LA+ K + D+ S +EEE + Sbjct: 188 VESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGK-----PAWDWQSPIEEEDLK 242 Query: 247 MIKEDLRVSCFIPEKY-VRCKQ-----IDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQ 299 D+ + E Y VR KQ + +L+ +V S ++S W+ +++ ++ Sbjct: 243 SAIRDIG-EARVQEAYQVRSKQERQACLTELRNSIVGSLVPEDNSQWSREQVLEAMGALE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR +L R+DGRD+ +R IS GLL RTHGS+LF RG+TQ++V TLGT D Sbjct: 302 KRLVREQILAGGERIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ G +R FM+HYNF P GE +G+P RREIGHGRLA+R+++ V+P F Sbjct: 362 AQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEESF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI PVAGIAMGL+K+ D F +LSDI Sbjct: 422 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFAVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM AL QA+ GR HIL +M++++ Sbjct: 482 LGDEDHLGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNEII 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R ++ E+ PR+ + I P++IR+VIG GG IR + E+TG ++I DDGTVKI S+ Sbjct: 542 STPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSAD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A+ + A+ + I EV KIY+G+V ++MDFGAFV +DGL+HISQ+S ERV Sbjct: 602 KADGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVKN 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SD + EGD + VK+L+ D +G+++LS+K + Sbjct: 662 VSDKLSEGDIIRVKVLEVDKQGRVRLSVKAI 692 >gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 704 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/695 (50%), Positives = 486/695 (69%), Gaps = 6/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF+GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA+ LSE+V+L A+ FGH E + VI I++L +P V +K+ + Sbjct: 185 VLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMIAA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 D +KEGD V VK+L+ D +G+I+LS+K V++ G Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698 >gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0070_08D07] Length = 695 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/677 (51%), Positives = 482/677 (71%), Gaps = 2/677 (0%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 +ET +IA+Q+ G L + G TVV+ TVV +S + GQDFFPLTVNYQE+ YA GKIPGG+ Sbjct: 17 IETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTVNYQEKAYAAGKIPGGF 76 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 RRE RP+E E L SR+IDR IRPLF K + NE QV+ V+ D + P + +M+ SAA Sbjct: 77 FRREGRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTDKDQDPDIAAMIGTSAA 136 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196 L +SGLPFEGP+ A+V Y +G Y+LNP + G L++ V+GT++AVLMVE EA +LS Sbjct: 137 LAISGLPFEGPIGAARVGYKDGAYLLNPGYEALKDGDLNMMVAGTEEAVLMVESEAKELS 196 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVS 255 ED +L A+++GH E + VI +I + A + +E + ++ S+ +++++ +L + Sbjct: 197 EDQMLGAVLYGHQEMQVVISSIKEFAADLGVQESVWAPPQENSESVVRVNEIVNTELGEA 256 Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMD 315 I +K R + LK+K+++ S+ + +EG+++S F ++ +VR +L+ + R+D Sbjct: 257 YKIVDKLERQNAVQSLKEKLLASALSDDNGLSEGDLLSAFSKLEKSLVRERVLNGEPRID 316 Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375 GRD +TVR I +VG+L +THGS+LF RG+TQA+VV TLGT D +D+L GT ++ FM Sbjct: 317 GRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRDAAIIDALEGTYKDQFM 376 Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435 +HYNF P + GE MG P RRE+GHG+LARR + VLP +FPYTLR+VSEITES+GS Sbjct: 377 LHYNFPPYSVGETGMMGGPKRREVGHGKLARRGVSAVLPDPDEFPYTLRVVSEITESNGS 436 Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495 SSMA+VCG+SLALMDAGVP++ PVAG+AMGLVK+G+ + +L+DI GDEDHLG MDFKVAG Sbjct: 437 SSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAVLTDILGDEDHLGDMDFKVAG 496 Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555 + G+TA+QMD+KI GI+E IM +AL QA RLHIL +M+KV+S+SR L E P +E Sbjct: 497 SSKGVTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKVISQSRESLSENAPSMET 556 Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615 M + PD+IR++IG GG IR IVE+TGA+V+IDDDG V+I + + A +AA I IT Sbjct: 557 MKVHPDKIRDIIGKGGATIRSIVEETGAEVDIDDDGLVRIYAENGASKDAAVNKIEEITA 616 Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 EV KIY G+V +++DFGAFV +DGL+HISQ++ ERV +D + EG V V +L Sbjct: 617 EAEVGKIYDGKVARIVDFGAFVTILPGKDGLLHISQIADERVESVTDYLSEGQKVEVVVL 676 Query: 676 DFDDRGKIKLSMKVVDQ 692 D D RG+IKLS+K V+ Sbjct: 677 DLDQRGRIKLSIKEVEN 693 >gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus Ueda107] gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus Ueda107] Length = 710 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/688 (50%), Positives = 484/688 (70%), Gaps = 11/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + + LETGRIARQ+ GAVL + GE VL TVV + GQDFFPL+V+YQE+ Sbjct: 7 KFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEKA 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGGY +RE RP+E E L SR+IDR IRPLF + + NE QVI V+ D + P Sbjct: 67 YAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTDKKQDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +SG+PF GP+ A+V Y G+ Y+LNP + + S LD+ V+GT+DAV Sbjct: 127 IAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVAGTKDAV 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKL 240 LMVE EA +L ED++L A+++GH E + VI+A ++LA+ K +P+ +++ + + Sbjct: 187 LMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQPVPENTELKTAI 246 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + I + R++ +K R ++ +L+ + V+ F++E S + + S+F ++ Sbjct: 247 KAAFGVAIGDAYRIT----DKAERYNRLGELRSEAVAQFATEESGISADAVKSLFGTLEY 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR+ ++ + R+DGRD++TVR I+ VG+L + HGS+LF RG+TQA+VV TLG D Sbjct: 303 NIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDV 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L G ++ F++HYNF P + GE RMG+ RREIGHGRLA+R + VLP+ FP Sbjct: 363 QIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPKAESFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YTLR+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ + F +L+DI Sbjct: 423 YTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA RLHIL EM+KVLS Sbjct: 483 GDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNKVLS 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +SR + E PR E + I PD+IR++IG GG IR I E+T + ++IDDDGTVK+ + Sbjct: 543 QSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDIDDDGTVKVYADDN 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++AA I +I E+ IY+G VV+++DFGAFV+F +DGLVHISQ++ ERV Sbjct: 603 EALQAALNRIGAIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIADERVNNV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD +KEG V VK LD D RG+IKLS+K Sbjct: 663 SDYLKEGQVVKVKCLDVDQRGRIKLSIK 690 >gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae] Length = 712 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/702 (50%), Positives = 492/702 (70%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAV+ + +TV+LATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+ Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL L+G+PF GPV A+V YI+GQYVLNP + + S LDL V+ Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI L + K + + ++ Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVS 293 L +SQ+ + LR + +K R +++ + ++ +E ++ N E+ S Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D+++G + +F+ HYNF P + GE RM P RREIGHGRLA+R + V+ Sbjct: 361 LGTARDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVM 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ VAGIAMGL+K+G+ F Sbjct: 421 PSLEAFPYTIRLVSEITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + + R +L +F PR+ + I P++IR+VIG GG VIR + E+TG +++I D+G V Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS + + A+ I +T EV KIY+G V+K++DFGA V +DGL+HISQ++ Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ERV +D +KEG V VK+L+ DDRG++KLSMK G Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702 >gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. 8004] gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris str. 8004] Length = 704 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L T V ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + L Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + + +K R I +KK ++ + +S W+ E+ F +++ Sbjct: 244 ALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +L+ KVR+DGR +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT D Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ D F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EMSK L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 704 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L T V ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + L Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + + +K R I +KK ++ + +S W+ E+ F +++ Sbjct: 244 ALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +L+ KVR+DGR +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT D Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ D F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EMSK L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. B100] gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris pv. campestris] Length = 735 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L T V ++ ++GQDFFPLTV+YQE Sbjct: 36 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 95 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 96 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 155 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 156 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 215 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + L Sbjct: 216 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 274 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + + +K R I +KK ++ + +S W+ E+ F +++ Sbjct: 275 ALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 334 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +L+ KVR+DGR +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT D Sbjct: 335 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 394 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 395 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 454 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ D F++LSDI Sbjct: 455 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 514 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EMSK L+ Sbjct: 515 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 574 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 575 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 634 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 635 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 694 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 695 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 731 >gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium HTCC5015] gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium HTCC5015] Length = 698 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/689 (50%), Positives = 486/689 (70%), Gaps = 8/689 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ G P+ +ETG +ARQ+ G+V+ +TVVL T + K Q FFPLTVNYQE+T Sbjct: 7 QFDFGGVPVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQEKT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + +RE RP+E E L +R+IDR IRPLF K + NE Q++ V+ + E P Sbjct: 67 YAAGKIPGSFFKREGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEVDPE 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 V +M+ SAAL +SG+PF+GP+ AQV Y +G+Y+LNP + D + L L V+GT+DAVL Sbjct: 127 VPAMIGTSAALSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDLALTVAGTEDAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EAN LSED++L A++FGH + + V++A+ +LA+ E V + + + +LE+ ++ Sbjct: 187 MVESEANCLSEDIMLGAVMFGHEKMQAVVQAVKELAEEVGTERWVFEEAEANVELEQAVA 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVFEDIQAK 301 ++DL + I +K R ++I +++ +V ++ + EG E+ SVF ++ Sbjct: 247 SAAQQDLGEAYTIADKMDRYQRIGEIRDAVVEQLAA--AEGEEGPEADEVKSVFAKLEKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR+ +L + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT D Q Sbjct: 305 IVRSRILAGEKRIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDAQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L+G +++F+ HYNF P GE +G+P RREIGHG+LA+R + V+P FPY Sbjct: 365 LIDDLAGEYKDNFLFHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVMPAQDDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R VSEITES+GSSSMA+VCGSSLA+MDAGVP+ PVAGIAMGL+K+GD F +L+DI G Sbjct: 425 TIRAVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDQFAVLTDILG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGTD G+TA+QMD+KI GI+ IM AL++AK GRLHIL EM+K L + Sbjct: 485 DEDHLGDMDFKVAGTDGGVTALQMDIKIQGITREIMAQALEEAKAGRLHILGEMAKELDK 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + PR + I PD+I +VIG GG IRGI E+TGA V+I+DDGT+KIAS Sbjct: 545 PREELSQHAPRYITVKIHPDKIGDVIGKGGATIRGITEETGASVDIEDDGTIKIASVKAE 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + E A++M+ +T EV KIY+G+VV + +FGAFV+ +DGLVHISQ++ ERV + Sbjct: 605 DGERAKKMVEELTAEIEVGKIYEGKVVGIKEFGAFVNILPGKDGLVHISQIAQERVENVT 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D + EG V VK+L+ D +G+++LSMK V Sbjct: 665 DHLSEGQEVRVKVLEVDRQGRVRLSMKEV 693 >gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/702 (50%), Positives = 490/702 (69%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAV+ + +TV+LATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+ Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL L+G+PF GPV A+V YI+GQYVLNP + + S LDL V+ Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI L + K + + ++ Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVS 293 L +SQ+ + LR + +K R +++ + ++ +E ++ N E+ S Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT DEQ +D L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ L Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G+ F Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + + R +L +F PR+ + I P++IR+VIG GG VIR + E+TG +++I D+G V Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS + + A+ I +T EV KIY+G V+K++DFGA V +DGL+HISQ++ Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ERV +D +KEG V VK+L+ DDRG++KLSMK G Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702 >gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani ATCC 19707] gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27] gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani ATCC 19707] gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27] Length = 695 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/688 (50%), Positives = 481/688 (69%), Gaps = 9/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE+ R L LETG IARQ+ GAV+ YGETVVL TVV + +G+DFFPLTVNYQERTY Sbjct: 8 IEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D E+ P + Sbjct: 68 AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSENDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 S++ ASAAL LSG+PF P+ A+V YI+GQYVLNP L + ++ +LDL V+GT+ AVLM Sbjct: 128 PSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVAGTEKAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI----VIDSKDFSKLEEE 243 VE EA +L E+++L +++F H E + VI+AI +LA+ K I+ +D +E Sbjct: 188 VESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEEDLKSAVQE 247 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + ++ + I K R + +L+ +V S E+S W+ +++ ++ ++ Sbjct: 248 VGEARAQE---AYQIRSKQERQASLAELRNSIVESLVPEENSRWSREQVLEAIGALEKRL 304 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR +L R+DGRD+ +R I+ GLL RTHGS+LF RG+TQ++V TLGT D Q Sbjct: 305 VREQILSGGERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQV 364 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D++ G +R FM+HYNF P GE +G+P RREIGHGRLA+R+++ V+P FPY Sbjct: 365 IDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEESFPYV 424 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI PVAGIAMGL+K+ D F +LSDI GD Sbjct: 425 IRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLSDILGD 484 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM AL QA+ GR +IL +M++++S Sbjct: 485 EDHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNEIISTP 544 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ E+ PR+ + I P++IR+VIG GG IR + E+TG ++I DDGTVKI S+ A+ Sbjct: 545 RQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSADKAD 604 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A+ + I EV KIY+G+V ++MDFGAFV +DGL+HISQ+S ERV SD Sbjct: 605 GQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVKNVSD 664 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + EGD + VK+L+ D +G+++LS+K + Sbjct: 665 KLSEGDVIRVKVLEVDKQGRVRLSVKAI 692 >gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23] gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23] gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 700 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/692 (51%), Positives = 480/692 (69%), Gaps = 4/692 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEE 243 VLMVE EA LSE+V+L A+IFGH E + VI+ I L A+ C + + L Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALVIA 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301 + ++I L + I +K R I +K ++ + E WN E++ F +++ + Sbjct: 245 LKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Q Sbjct: 305 TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+++G + +F+ HYNF P + GE R G P RREIGHGRLARR + V+P +FPY Sbjct: 365 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI G Sbjct: 425 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 485 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L ++ PR+ + I PD+IR+VIG GG I+ I ++TG +++I DDGT+ IAS + A Sbjct: 545 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNNA 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 605 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 665 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696 >gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa Temecula1] gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1] Length = 719 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/692 (51%), Positives = 480/692 (69%), Gaps = 4/692 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 24 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 83 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 84 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 143 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 144 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 203 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEE 243 VLMVE EA LSE+V+L A+IFGH E + VI+ I L A+ C + + L Sbjct: 204 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALVIA 263 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301 + ++I L + I +K R I +K ++ + E WN E++ F +++ + Sbjct: 264 LKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 323 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Q Sbjct: 324 TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 383 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+++G + +F+ HYNF P + GE R G P RREIGHGRLARR + V+P +FPY Sbjct: 384 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFPY 443 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI G Sbjct: 444 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 503 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 504 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 563 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L ++ PR+ + I PD+IR+VIG GG I+ I ++TG +++I DDGT+ IAS + A Sbjct: 564 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNNA 623 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 624 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 683 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 684 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715 >gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus Nc4] gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus Nc4] Length = 711 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/696 (51%), Positives = 484/696 (69%), Gaps = 25/696 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE+ R L LETG IARQ+ GAV+ YGET VL T V + +G+DFFPLTVNYQERTY Sbjct: 24 IEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNYQERTY 83 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D E+ P + Sbjct: 84 AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGENDPDI 143 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 S++ ASAAL LSG+PF P+ A+V YI+G+YVLNP L + ++ +LDL V+GT+ AVLM Sbjct: 144 PSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTEKAVLM 203 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE EA +L E+++L ++IFGH E + VI+AI +LA+ K P D+S E+ Sbjct: 204 VESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPW-----DWSTPVED---- 254 Query: 248 IKEDLRVSCF------IPEKY-VRCKQ-----IDDLKKKMVSYF-SSEHSSWNEGEIVSV 294 EDL + + + E Y VR KQ + + + +V E W++ +++ Sbjct: 255 --EDLMSAVWDCGEARLQEAYQVRSKQDRQASLAEARSFIVERLVPEEDPQWSKEQVLEA 312 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 ++ ++VR +L R+DGRD+++VR I+ GLL R HGS+LF RG+TQ++V TL Sbjct: 313 VSALEKRLVREQILAGGERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTL 372 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D++ G +R FM+HYNF P GE +GAP RREIGHGRLA+R+++ V+P Sbjct: 373 GTERDAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVP 432 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI++PVAGIAMGL+K+ D F Sbjct: 433 DEESFPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFA 492 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL QA+ GRLHIL + Sbjct: 493 VLSDILGDEDHLGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQK 552 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M++V+S R ++ E+ PR+ + I P++IR+VIG GG IR + E+TG ++I DDGTVK Sbjct: 553 MNEVISAPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDITDDGTVK 612 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I SS A+ + AR + I EV KIY+G+V ++MDFGAFV +DGL+HISQ+S Sbjct: 613 IFSSDKADGQEARRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISD 672 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD + EGD + VK+L+ D +G+++LS+K + Sbjct: 673 ERVKNVSDKLSEGDIIRVKVLEVDKQGRVRLSIKAI 708 >gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas suwonensis 11-1] gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas suwonensis 11-1] Length = 701 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/695 (51%), Positives = 486/695 (69%), Gaps = 6/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ G+V+ +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE RPTE E LISR+IDR IRPLF + YKNE Q+I VM + E Sbjct: 65 KFYAGGRIPGGFFKREGRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 + +++ ASAAL L+G PF+GP+ A+V Y +GQY+LNP E + L+L V+GT +A Sbjct: 125 GDIPALIGASAALSLAGTPFKGPIGAAKVGYKDGQYILNPSASELAESKLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI AI++L +P V +K+ L Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELVAEAGTKPSQWVAPAKN-EALIA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + I +K R I +KK + + ++ WN E+ F +++ Sbjct: 244 ALKEAVGNRLADAFQIRDKLERRDAIAAIKKDVAEQLAGRVAAEGWNPAELGKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD KVR+DGR +TVR IS + G+L RTHGS++F RG+TQAIVV TLGT D Sbjct: 304 RTMRDSVLDTKVRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QIIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSIEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ D F++LSDI Sbjct: 424 YTVRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM AL+QAK GRLHIL EM+K L+ Sbjct: 484 GDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALEQAKAGRLHILGEMAKALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L E+ PR+ + I PD+IR VIG GG I+GI ++TG +++I DDGT+ IAS + Sbjct: 544 APRAELSEYAPRLLTIKIHPDKIREVIGKGGATIQGITKETGTQIDIQDDGTIVIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 AAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SD +KEGD V VK+L+ D +G+I+LS+K V++ G Sbjct: 664 SDKLKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEG 698 >gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 720 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/691 (50%), Positives = 473/691 (68%), Gaps = 13/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+DGAVL +TVVL T V + G+ FFPLTVNYQERTY Sbjct: 30 FQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTY 89 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L R+IDR IRPLF + + NE QV+ V+ + E + Sbjct: 90 AAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADI 149 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAAL +SG+PF+GP+ A+V Y +G+Y+LNP +E S LDL V+GT++AVLM Sbjct: 150 PALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLM 209 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EANQL E+ +L A+++GH + + I+AI++L K P D+ LE Sbjct: 210 VESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA----LET 265 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQ 299 + ++ +DL + IPEK R +I +L+++ V E W E ++ F+ ++ Sbjct: 266 AIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLE 325 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VR +L + R+DGRD+ TVR I +VG L RTHGS++F RG+TQA+VV TLGT D Sbjct: 326 KDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRD 385 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ G ++ FM+HYNF P GE MG P RREIGHG+LA+R I V+P Sbjct: 386 AQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDC 445 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+K+ + F +LSDI Sbjct: 446 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDI 505 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+ IM AL+QA+ GRLHIL EM+ + Sbjct: 506 LGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAI 565 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R ++ E+ PR+ + I PD+IR+VIG GG IR + E+TG ++I DDG V IAS+ Sbjct: 566 SGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASAD 625 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A + AR I +T EV +Y+G+V K+MDFGAFV+ RDGLVHISQ+S ERV + Sbjct: 626 KAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVER 685 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D +KEGDTV VK+L+ D +G+I+LSMK V Sbjct: 686 VGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 716 >gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73] gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas albilineans] Length = 702 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/695 (50%), Positives = 484/695 (69%), Gaps = 6/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + + + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTSNA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSEDV+L A+ FGH E + VI AI++L +P V +K+ + + Sbjct: 185 VLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAAMIVA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300 + + + L + + +K R I +KK +++ + ++ W ++ F +++ Sbjct: 245 -LKEAVGGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVAADLAKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR IS + G+L RTHGS+LF RG+TQAIVV TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTMEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM AL QAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 SPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 D +KEGD V VK+L+ D +G+I+LSMK V++ G Sbjct: 664 GDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698 >gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 698 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/691 (50%), Positives = 473/691 (68%), Gaps = 13/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+DGAVL +TVVL T V + G+ FFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L R+IDR IRPLF + + NE QV+ V+ + E + Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAAL +SG+PF+GP+ A+V Y +G+Y+LNP +E S LDL V+GT++AVLM Sbjct: 128 PALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EANQL E+ +L A+++GH + + I+AI++L K P D+ LE Sbjct: 188 VESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA----LET 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQ 299 + ++ +DL + IPEK R +I +L+++ V E W E ++ F+ ++ Sbjct: 244 AIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLE 303 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VR +L + R+DGRD+ TVR I +VG L RTHGS++F RG+TQA+VV TLGT D Sbjct: 304 KDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRD 363 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ G ++ FM+HYNF P GE MG P RREIGHG+LA+R I V+P Sbjct: 364 AQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDC 423 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ PVAGIAMGL+K+ + F +LSDI Sbjct: 424 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDI 483 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+ IM AL+QA+ GRLHIL EM+ + Sbjct: 484 LGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAI 543 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R ++ E+ PR+ + I PD+IR+VIG GG IR + E+TG ++I DDG V IAS+ Sbjct: 544 SGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASAD 603 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A + AR I +T EV +Y+G+V K+MDFGAFV+ RDGLVHISQ+S ERV + Sbjct: 604 KAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVER 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D +KEGDTV VK+L+ D +G+I+LSMK V Sbjct: 664 VGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 694 >gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 706 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/691 (50%), Positives = 484/691 (70%), Gaps = 2/691 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+A+ +T V +VV + +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + SP + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPNVSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++M+ SAAL +SG+PF GP+ A+V +IN Q+VLNP ++ ++ LDL V+GT+DAVLM Sbjct: 128 ITMIGTSAALAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA++LSE+ +L A++FGH++ + VI AI++ A A I ++ + L+ ++++ Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQTVINAINEFAAEVATPAWDWIAPEENTVLKNKIAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + L + I EK R +I ++ ++ SE N E+ ++F D++ VVR Sbjct: 248 LAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLSEDLEVNTKEVHTIFHDLEKTVVRRS 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +D L Sbjct: 308 IIAGNPRIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDEL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P +FPYT+R+V Sbjct: 368 TGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK R+HIL+ M ++ R + Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNAINAPRDDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EF PR+ M I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATDGLQAKEA 607 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 I IT EV +IY G+V +++DFGAFV G ++GLVHISQ+S ERV K SD +KE Sbjct: 608 IRRIEEITADVEVGRIYTGKVTRIVDFGAFVSVIGTKEGLVHISQISQERVEKVSDYLKE 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 G V VK+L+ D +G+I+LSMK Q +P Sbjct: 668 GQEVPVKVLEIDRQGRIRLSMKEAVQPAEQP 698 >gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] - Buchnera sp. (strain APS) gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 707 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/686 (50%), Positives = 490/686 (71%), Gaps = 2/686 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ++ AV+A+ ET V TVV + + GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+ENEIL +R+IDR +RPLF K + NE Q+I V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 ++S++ ASAAL LSG+PF GPV A+V YIN QY+LNP D+ SLDL VSGTQ+A+L Sbjct: 128 IISIIGASAALSLSGIPFYGPVGAARVGYINNQYILNPISDDMKNSSLDLVVSGTQNAIL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE E+ LSE+ +L AIIFGH + + VI I L+ +K P VI + +K LE ++ Sbjct: 188 MVEAESKILSEEKILGAIIFGHQQQQVVINNIRSLSNEASKLPWVISYPETNKTLELKII 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++++ + I K R ++++ +K+ ++ F E+S+ + EI +F+ I+ KVVR Sbjct: 248 NSFEKNISDAYVIFNKQDRIEKLNSIKENIIKLFLDENSNIDTLEIEDIFQKIEKKVVRK 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQ++V VTLGT D Q +D Sbjct: 308 RILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + ++F+ HYNF P + GE+ +G+P RREIGHGRLA+R++ V+P FPYT+R+ Sbjct: 368 LLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPTLENFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGI+MGLVK+G+ ++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGNQHVLLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+ GITA+QMDMKI GI+ I+ AL +A+ RLHILN M++ L+ESR + Sbjct: 488 LGDMDFKVAGTEEGITALQMDMKIEGITNEIIHSALNEARLARLHILNVMNQALNESRSE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ I+ I P++I++VIG GG VIR + E+TG + I+DDGTVKI+S+ + + Sbjct: 548 ISEFAPRIHIIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKISSTVKEKAKN 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I+ IT EV +IY G+V +++DFGAFV ++GLVHISQ+S +RV K S+ +K Sbjct: 608 AIRRIKEITAEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDKRVDKVSNHLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVD 691 + VK+L+ D +G+++LS+K +D Sbjct: 668 IDQIISVKVLEIDRQGRLRLSIKEID 693 >gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12] gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12] Length = 700 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/693 (51%), Positives = 479/693 (69%), Gaps = 6/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+IFGH E + VI+ I L EP V +K+ L Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTEPSDWVPPAKN-DALVI 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300 + ++I L + I EK R I +K ++ + E WN E++ F +++ Sbjct: 244 ALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R G RREIGHGRLARR + V+P +FP Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GG I+ I + TG +++I DDGT+ IAS + Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNN 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696 >gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli AAC00-1] gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1] Length = 758 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/707 (49%), Positives = 496/707 (70%), Gaps = 14/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + + +ETG IARQ+ GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V YING+YVLNP + S +DL V+ Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA QLSED++L A++FGH + + I AI +L + K +P D Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ +Q+ +E LR + I K R + + + ++ +E + ++ ++ ++ Sbjct: 243 PFIAKV----TQLAEEKLRAAYQIRSKQARTQALREASASVLESLKAEGADFDAVKVEAL 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TL Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D+L+G + FM HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 359 GTERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F Sbjct: 419 TKEEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK RLHIL + Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + E++ ++ F P++ M I P++IR+VIG GG VIR + E+TG ++NID+DGT+ Sbjct: 539 MQEAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS+ A+ + A+ I IT E+ KIY+G VVK++DFGA ++ +DGL+HISQ++ Sbjct: 599 IASTDSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ---NTGKP 697 ERV K +D + EG V VK+L+ D++G++KLSM+ ++D+ ++G+P Sbjct: 659 ERVEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705 >gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas maltophilia R551-3] gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas maltophilia R551-3] Length = 702 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/698 (50%), Positives = 481/698 (68%), Gaps = 12/698 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L + V +S ++GQDFFPLT +YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + E Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 + +++ ASAAL L+G PF+GP+ A+V Y +G+Y+LNP + E + L+L V+GT +A Sbjct: 125 GDIPALIGASAALSLAGTPFKGPIAAAKVGYKDGEYILNPTVSELKESQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239 VLMVE EA LSEDV+L A+ FGH E + VI AI++L +P ++ S Sbjct: 185 VLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTALISA 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297 ++E + + E +V +K R I +KK +V + ++ WN E+ F + Sbjct: 245 VQEAVGPRLGEAFQVR----DKLQRRDAISAIKKDVVESLAGRVAAEGWNPAELSKEFGE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +R +LD KVR+DGR +TVR I+ + +L RTHGSSLF RG+TQAIV +TLGT Sbjct: 301 LEYSTMRNSVLDTKVRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTA 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D++SG + +F+ HYNF P + GE RM P RREIGHGRLA+R + V+P Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+GD F++LS Sbjct: 421 SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GI+A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S++RV Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 K DV+KEGD V VK+L+ D +G+I+LSMK V++ G Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698 >gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 700 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/693 (51%), Positives = 481/693 (69%), Gaps = 6/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ++GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A++ Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+IFGH E + VI+ I L +P V +K+ L Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300 + ++I L + I +K R I +K ++ + E WN E++ F +++ Sbjct: 244 ALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R G P RREIGHGRLARR + V+P +FP Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GG I+ I + TG +++I DDGT+ IAS + Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVNN 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 604 AAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696 >gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa 9a5c] gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c] Length = 719 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/693 (51%), Positives = 481/693 (69%), Gaps = 6/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ++GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 24 TKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 83 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 84 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 143 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A++ Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 144 GDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTANA 203 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+IFGH E + VI+ I L +P V +K+ L Sbjct: 204 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 262 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300 + ++I L + I +K R I +K ++ + E WN E++ F +++ Sbjct: 263 ALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 322 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Sbjct: 323 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 382 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R G P RREIGHGRLARR + V+P +FP Sbjct: 383 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 442 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI Sbjct: 443 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 502 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 503 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 562 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GG I+ I + TG +++I DDGT+ IAS + Sbjct: 563 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVNN 622 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 623 AAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 682 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 683 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715 >gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Dixon] gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Dixon] Length = 700 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/693 (51%), Positives = 479/693 (69%), Gaps = 6/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+IFGH E + VI+ I L +P V +K+ L Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300 + ++I L + I EK R I +K ++ + E WN E++ F +++ Sbjct: 244 ALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R G RREIGHGRLARR + V+P +FP Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GG I+ I + TG +++I DDGT+ IAS + Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNN 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696 >gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] Length = 710 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/693 (50%), Positives = 495/693 (71%), Gaps = 3/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ LKLETG +ARQ+DGAV+ +YGETVVL TVV ++++K+GQDFFPLT Sbjct: 5 MFNKVSKSMKLGAHELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA GKIPGG+ +RE RP+ENEIL+ R+IDR +RPLF K + N+ Q++ V+ Sbjct: 65 VDYQEKTYAAGKIPGGFFKREGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSS 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E + +++ ASAAL +SG+PF GP+ +V Y++G+YV+NP + Q S LDL V+ Sbjct: 125 DSEIDADIPAIIGASAALSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESELDLVVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAVLMVE EA +LSE V+LDA++ GH K VI+ I+ AK AK+P ++ + ++ Sbjct: 185 GTKDAVLMVESEAKELSEKVMLDAVLAGHKAAKDVIKLINDFAKDSAKDPWEWNAPEPNQ 244 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297 L ++S++ ++DL + I K R ++I ++K K+ + +E E E+ F + Sbjct: 245 ELISKISKLAEKDLSKAFSIKLKSERSQKISEIKDKVQAELITEDMGTLEVNEVNKEFFN 304 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++AK+VR+ +LD + R+DGRD+ TVR I +L RTHGS+LF RG+TQA+ V TLGT Sbjct: 305 LEAKIVRSKILDGEPRIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTP 364 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L G + FM+HYNF P +TGE R+G+P RREIGHGRLA+RA+ VLP+ Sbjct: 365 RDAQIIDALQGEYTDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALLAVLPEQE 424 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F YT+R+VSEI ES+GSSSMA+VCG +A++DAGVP+ VAGIAMGL+K+ + IL+ Sbjct: 425 DFDYTIRLVSEIMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILT 484 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+ IM +AL+QAK GR HIL+ M K Sbjct: 485 DILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITTEIMQVALKQAKEGREHILDLMKK 544 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L SR +L ++ PR+ + I PD+IR+VIG GG VI+ + E+T ++I DDG VK+A Sbjct: 545 ALKSSRTELSKYAPRIMTLNIHPDKIRDVIGKGGAVIKALTEETNTTIDITDDGLVKVAC 604 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S E + A + I+ IT EV++IY G+VVK++DFGA V +DGL+HISQ++ ERV Sbjct: 605 TSGEEGQLAIDRIKEITADVEVDQIYDGKVVKILDFGAIVQLIPGKDGLLHISQIAHERV 664 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D + EGD V VK+++ D +GK+++S K + Sbjct: 665 KSVKDHLSEGDEVKVKVIEVDQKGKVRVSAKAL 697 >gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] Length = 700 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/693 (51%), Positives = 480/693 (69%), Gaps = 6/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E + S L+L V+GT +A Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+IFGH E + VI+ I L +P V +K+ L Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300 + +I L + I +K R I +K ++ + E WN E++ F +++ Sbjct: 244 ALKGVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +LD +VR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Sbjct: 304 RTMRDALLDTEVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+++G + +F+ HYNF P + GE R G P RREIGHGRLARR + V+P +FP Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR+VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNN 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696 >gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 704 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 485/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + D L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++LA +P V +K+ + Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPSDWVAPAKNDGMIAA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas arsenicoxydans] gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Herminiimonas arsenicoxydans] Length = 710 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/697 (51%), Positives = 488/697 (70%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V YI+GQY+LNP + + S +DL V+ Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GT+ AVLMVE EA QLSE+V+L A++FGH++ K VI+AI L + K + +K+ Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKN- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIV 292 L ++ +E LR + +K R ++ D ++ + ++E +S + E+ Sbjct: 240 EALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVG 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 ++ D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ Sbjct: 300 NILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIA 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT DEQ +D+L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ Sbjct: 360 TLGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAA 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+KDG Sbjct: 420 LPAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGK 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +LSDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL Sbjct: 480 FAVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHIL 539 Query: 533 NEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 EM K V S + +L +F PR+ + I P++IR+VIG GG VIR + E+TG +++I D+G Sbjct: 540 GEMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEG 599 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS A + A+ I +T EV K+Y+G V+K++DFGA V +DGL+HISQ Sbjct: 600 VVTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQ 659 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ ERV +D +KEG V VK+L+ DDRG++KLSMK Sbjct: 660 IANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMK 696 >gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 707 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/688 (49%), Positives = 496/688 (72%), Gaps = 2/688 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+A+ +T V TVV +++ Q FFPLTVNYQERT Sbjct: 8 KFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPGG+ RRE RP+ENEIL +R+IDR IRPLF K + NE Q+I V+ + + +P Sbjct: 68 YAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 ++S++ ASAAL LSG+PF GP+ A+V ++N QYVLNP +D+ + S LDL VSGTQ+AVL Sbjct: 128 IISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVSGTQNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE E+ LSED +L AI+FGH + + VI I L+ +K P +I + ++LE +++ Sbjct: 188 MVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEASKLPWIISYPEINTELELKIT 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ ++D+ + I K R ++++ LK++++ F SE+S+ + EI +FE I+ +VR Sbjct: 248 KLAEKDISNAYLIFNKQERYEKLNFLKEEIIKLFFSENSNIDISEIEDIFEKIEKNIVRK 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ + R+DGR+ + +R + + G+L RTHGSSLF RG+TQ++V VTLGT D Q +D Sbjct: 308 RILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + ++F+ HYNF P + GE+ +G+P RREIGHGRLA+R++ V+P+ FPYT+RI Sbjct: 368 LLGDKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPKLDDFPYTIRI 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGI+MGLVK+GD +++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKYVLLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKV+GT+ GITA+QMD+KI GI+ IM +AL +AK RLHILN M + LS+ R + Sbjct: 488 LGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMKQALSKPRNE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I P++I++VIG GG VIR + E+TG + I+DDGT+KI+++ + + Sbjct: 548 ISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTIKISATIGEKAKN 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAF+ ++GLVHISQ+S +RV K SD + Sbjct: 608 AIRRIEEITAEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVEKVSDHLT 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 + VK+L+ D +G+++LS+K V+ + Sbjct: 668 VDQIISVKVLEIDRQGRLRLSIKEVENS 695 >gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Reinekea sp. MED297] gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Reinekea sp. MED297] Length = 706 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/700 (51%), Positives = 493/700 (70%), Gaps = 13/700 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T ++ + +ETGR+ARQ+ G+ + T G+TVVLATVV S+ GQDFFPL+V+YQ Sbjct: 8 TKSFKFGQHDVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQ 67 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ Y+VG+IPGGYL+RE RP+E E L SR+IDR IRPLF K + NE QVIINV+ + Sbjct: 68 EKFYSVGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTD 127 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQ 182 P + +M+A SAAL +SG+PF GP+ A+V Y + + Y+LNP ++ + S LD+ V+GTQ Sbjct: 128 DPDIAAMLATSAALAVSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETSRLDMVVAGTQ 187 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237 DAVLMVE EA +LSED +L A++F H E + + AI++ A K P + Sbjct: 188 DAVLMVESEAQELSEDQMLGAVLFAHQEFQVAVSAIAEFAAEHGKPAWDWAPEAENEALK 247 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 +K+ E + I E +VS +K R + DL+ + V ++E + ++ S+F Sbjct: 248 TKVSEAYAAKIAEAYQVS----DKMQRYAALSDLRAQAVETLATEDGETSADDVASMFGK 303 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+ VR +LD + R+DGRD +TVRDI +VG+L HGS+LF RG+TQA+V TLGT Sbjct: 304 IEKNTVRQRILDGQPRIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTL 363 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D + D L+GT ++FM+HYNF P + GE R+G RREIGHGRLA+R + ++P T Sbjct: 364 RDGKMEDMLTGTITDNFMLHYNFPPFSVGEAGRIGGVGRREIGHGRLAKRGVLAMMPNTD 423 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+ KPVAGIAMGLVK+GD F +L+ Sbjct: 424 DFPYTVRVVSEITESNGSSSMASVCGASLAMMDAGVPVKKPVAGIAMGLVKEGDKFTVLT 483 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+E IM +AL QA RLHIL EM++ Sbjct: 484 DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITEEIMEIALGQAMDARLHILREMAQ 543 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+ +R +L + P +++M + D+IR+VIG GG IR I++QTGA+V+I DDGTV+I + Sbjct: 544 VIGYARPELPDNAPTMDVMKVDQDKIRDVIGKGGATIRSIIDQTGAEVDISDDGTVRIYA 603 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ EAAR MI +IT PE+ ++YKG V ++ DFGAFV F +DGLVHISQ++ ER+ Sbjct: 604 AAKEGAEAARNMILAITAEPEIGEVYKGTVARLADFGAFVTFLPGKDGLVHISQIAQERI 663 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696 K +D + EG+ V VK+LD D RG++KLS+K V D++ K Sbjct: 664 EKVADKLSEGEAVVVKVLDVDARGRVKLSIKEVTDEDRAK 703 >gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas vesicatoria ATCC 35937] gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas vesicatoria ATCC 35937] Length = 704 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/697 (51%), Positives = 487/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMIAA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGSLAPRATVEGWVAGDLSKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++TPR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYTPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis Bem] gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis Bem] Length = 696 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/692 (50%), Positives = 478/692 (69%), Gaps = 13/692 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 VHTV+ E G+ + +ETG+IA+Q+ GAV+ G+T+VL T V +S K+GQ FFPLTVNY Sbjct: 2 VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QE+ YA G+IPG + +RE RP++NE L R+IDR IRPLF + + N+TQ++ V+ D + Sbjct: 62 QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++SM+ ASAALM+S +PF GP+ G +V ++GQ++ NP ++++ S L++ ++ +Q Sbjct: 122 NDPGILSMIGASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAASQ 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKD 236 DA+LMVE A ++SED +L+AI FGH +PV+ A +LAK P+V ++ Sbjct: 182 DAILMVEGSACEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKREIPAPVVNEA-- 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L+ +S + KE ++ + I K R ID + + V+ S+E +E EI E Sbjct: 240 ---LKARVSALAKEGMKQAVRIKTKVERHLAIDAIADETVAALSAEFEG-SEKEIKGFIE 295 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ +VR ++ R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV TLGT Sbjct: 296 DLEYDLVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGT 355 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +DSL G R FM+HYNF P + GE S AP RREIGHG LA RA+ VLP+ Sbjct: 356 SVDEQRIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKH 415 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+RIVS+ITES+GSSSMATVCG SL++MDAG+PI PVAGIAMGL+K+GDDF IL Sbjct: 416 DDFPYTIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAIL 475 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G+TA+QMD+KIGG++ IM AL QAK GR+HIL EM+ Sbjct: 476 SDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMA 535 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + SR L F PR+ + + D+IR+VIG GGK IR + E TG ++IDD G + IA Sbjct: 536 KTIGASRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIA 595 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S++ + A +MIR++T E K+Y G V K+M+FGAFV DGLVH+S+L TER Sbjct: 596 STNKEACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTER 655 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V SD++KEGD V VK + D +GKIKLS K Sbjct: 656 VKNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687 >gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 704 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 486/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKN-DGMIA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 244 ALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas perforans 91-118] gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas perforans 91-118] Length = 704 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/699 (51%), Positives = 487/699 (69%), Gaps = 14/699 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF+GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ E Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKN-----E 239 Query: 243 EMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFE 296 M +KE D S F + +K R I +KK ++ + + W G++ F Sbjct: 240 GMIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFG 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +++ + +R +L KVR+DGR +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT Sbjct: 300 ELEYQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P Sbjct: 360 ARDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTL 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++L Sbjct: 420 EEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ Sbjct: 480 SDILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMA 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 L+ R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IA Sbjct: 540 HALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S + +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ER Sbjct: 600 SVNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V K D +KEGD V VK+L+ D +G+I+LS+K V++ G Sbjct: 660 VEKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698 >gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 704 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 486/697 (69%), Gaps = 6/697 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ + +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKN-DGMIA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 244 ALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATIEGWAAGDLSKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D +KEGD V VK+L+ D +G+I+LS+K V++ G P Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700 >gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus VCS1703A] gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus VCS1703A] Length = 693 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/689 (50%), Positives = 481/689 (69%), Gaps = 6/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+V + + LETG IARQ+DGAV+ +T+VL TVV ++++ +GQDFFPLTV+YQ Sbjct: 3 HSVSFTYGQHQVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RP+E E LISR+IDR IRPLF+ + NE Q+I V+ ++ E Sbjct: 63 EKNYAAGKIPGGFFKREGRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 SP + S++ ASAAL LSGLPF GP+ A+V Y+N YVLNP + S LDL V+GT+ Sbjct: 123 SPDIPSIIGASAALKLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRLDLVVAGTES 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLE 241 AVLMVE EA+QLSE V+L+A++FGH + + VI++I++LA AK S +D +L+ Sbjct: 183 AVLMVESEADQLSEAVMLEAVMFGHRQQQVVIKSINELAAQAAKPAWAWQSPARD-EQLD 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQ 299 E+ +E L + I K R + + + V+ ++++ W E + + Sbjct: 242 TEVKNHFEERLVAAYQIAHKQTRQETVAQIHADAVALLGIQNNAHGWEETLVNEYVHHLA 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR +L K+ R+DGRD++TVR I+ +L R HGS+LF RG+TQA+VV TLGT D Sbjct: 302 YRIVRDRILKKQPRIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D+L G R++FM+HYNFLP + GE+ R+G+P RREIGHGRLARR + VLP F Sbjct: 362 AQLLDTLDGEVRDNFMLHYNFLPFSVGEIGRIGSPKRREIGHGRLARRGLSAVLPLEEDF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGL+K+GD+F IL+DI Sbjct: 422 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM AL QA GRLHIL M++ + Sbjct: 482 LGDEDHLGDMDFKVAGSATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L ++ PR M I ++I++VIG GG IR I EQTG + I+DDG+VKIA++ Sbjct: 542 AAPRAELSDYAPRFSSMRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A AR +I I PE+ +IY +V K+ DFGAF+ F ++GLVHISQ++ RV Sbjct: 602 KAAAANARRLIEEIVAEPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVND 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D + EG V VKLL+ D +G+++LS+K Sbjct: 662 VRDELTEGQEVKVKLLEIDRQGRVRLSIK 690 >gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae T7901] gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae T7901] Length = 705 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/688 (50%), Positives = 481/688 (69%), Gaps = 11/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETGRIARQ+ GAVLA+ G+T VL TVV + GQDFFPL+V+YQE+ Sbjct: 7 KFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEKA 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + NE QV+ V+ + + P Sbjct: 67 YAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +SG+PF GP+ A+V Y Y+LNP S LD+ V+GTQDAV Sbjct: 127 ICAMIGTSAALAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSELDMVVAGTQDAV 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKL 240 LMVE EAN+L ED++L A+++ H E + V++A+++LAK K +P ++ L Sbjct: 187 LMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVNQALVDAL 246 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + + +E + V+ I +K R ++ +L+ + V+ + E S ++ ++ VF ++ Sbjct: 247 KADF----EESIGVAYRITDKQKRYDRLSELRSQAVAQLAGEGSDISQDDVKKVFGKLEK 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR+ ++ + R+DGRD++TVR + +VG+L + HGS+LF RG+TQA+VV TLG+ D Sbjct: 303 NIVRSRVVAGEPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G R++FM+HYNF P + GE RMGA RREIGHGRLARR + +LP+ QFP Sbjct: 363 QIIDALEGEHRDNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKEDQFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ + F +L+DI Sbjct: 423 YTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFAVLTDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM AL+QA RLHIL+EM+ V++ Sbjct: 483 GDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHILSEMNAVIA 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + R L + P+ M + P++IR++IG GG IR I E+TGA ++IDDDGTVKI Sbjct: 543 QPRESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGASIDIDDDGTVKIYGDDG 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ A I IT E+ ++YKG+VV+++DFGAFV+F +DGLVHISQ++ ERV Sbjct: 603 DSLQGAINRIEEITAEAEIGEVYKGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQNV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D +KEG V VK +D D RG+IKLS+K Sbjct: 663 TDYLKEGQEVDVKCMDIDQRGRIKLSIK 690 >gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] Length = 701 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/698 (50%), Positives = 473/698 (67%), Gaps = 3/698 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V E + + LETG+IARQ+ GAVL + + VL TVV + +DFFPLT Sbjct: 1 MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGGY +RE +P+E E L SR+IDR +RPLF + ++NE Q+I V+ Sbjct: 61 VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++ P + ++V ASAAL +SG+PF GP+ A+V +++G YVLNP ++ SLDL V+ Sbjct: 121 DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT AVLMVE EA +L+ED +L A+++GH E + IEAI+ AK +++ + Sbjct: 181 GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFED 297 L+ + + LR + I EK R +Q+ +K + VS + E S + E+ + D Sbjct: 241 GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIKAQAVSDLAVEGQSEITKEEVSRLLGD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR +L R+DGRD++TVR IS +VG L RTHGS+LF RG+TQAIV TLG+ Sbjct: 301 LEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSM 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L G + FM+HYNF P GE P RREIGHGRLARR I VLP+ + Sbjct: 361 RDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPENS 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPY +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+GD F +L+ Sbjct: 421 AFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLT 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA+ GRLHIL EM+K Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+ SR L P I PD+IR+VIG GG IR I E+T A ++I+D G V+I Sbjct: 541 VIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIEDTGVVRIYG 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA + +IT PE+ +IY G+V +++DFGAFV F +DGLVHISQ++ ERV Sbjct: 601 ENGGSADAALARVLAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLVHISQIAEERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 AK +D ++EG V VK+LD D+RG++KLS+K + G Sbjct: 661 AKVTDYLQEGQEVQVKVLDIDNRGRVKLSIKEAKADAG 698 >gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus degradans 2-40] gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans 2-40] Length = 722 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/686 (50%), Positives = 483/686 (70%), Gaps = 7/686 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETGRIARQ+ GAVLA+ G+T VL V + K GQDFFPL+V+YQE+ Sbjct: 19 KFQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVHYQEKA 78 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF + NE QV+ V+ + + P Sbjct: 79 YAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQVVCTVISAEKDVDPD 138 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 +V+M+ SAAL +SG+PF GP+ A+V Y Y+LNP + S LD+ V+GT DAV Sbjct: 139 IVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKTSELDMVVAGTADAV 198 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEE 242 LMVE EA +L ED++L A+++ H E + V++A+++LAK AK V D K ++L+ Sbjct: 199 LMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKP--VWDWKPEEVNAELKA 256 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ + + V+ I +K R ++ +L+ + V+ ++E S + E+ +F I+ ++ Sbjct: 257 KVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATEESGVSADEVKGLFAKIEKQI 316 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ ++ + R+DGRDS+TVR + +VG+L + HGS+LF RG+TQA+VV TLG+ D Q Sbjct: 317 VRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQI 376 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G +++ FM+HYNF P + GE RMGA RREIGHGRLARR I VLP+ FPYT Sbjct: 377 IDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEEDFPYT 436 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+ + F +L+DI GD Sbjct: 437 MRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTDILGD 496 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RLHIL EM++V++ Sbjct: 497 EDHLGDMDFKVAGTADGVTALQMDIKIEGITEEIMEIALGQAMDARLHILAEMNRVIASP 556 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L E P+ M I PD+IR++IG GG IR I E+TGA ++IDD+GT+KI + Sbjct: 557 RKELSENAPQFHTMKIDPDKIRDIIGKGGATIRSITEETGASIDIDDNGTIKIYADDGDG 616 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++AA I IT E+ +Y+G+VV+++DFGAFV+F +DGLVHISQ++ ERV SD Sbjct: 617 MQAAIARIEEITAEAEIGAVYQGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQNVSD 676 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 +KEG + VK +D D RG+IKLS+K Sbjct: 677 YLKEGQDIEVKCMDIDQRGRIKLSIK 702 >gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1] gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1] Length = 702 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/692 (50%), Positives = 476/692 (68%), Gaps = 3/692 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T ++ + LETGRIARQ+ GAVL T G+ VLATVV +S K GQDFFPL+V+Y Sbjct: 3 ITTKTFQFGNDTVTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+ VM + Sbjct: 63 QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTN 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGSL-DLFVSGT 181 + +M+A SAAL +SG+PF GP+ A+V + + YVLNP + GSL D+ V+GT Sbjct: 123 LDADIAAMLATSAALTISGIPFNGPIGAARVGFNDESGYVLNPSYSDLDGSLLDMVVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240 +DAVLMVE EA +L+ED +L A+++ H E + I AI++ A CAK +++ + L Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQAAISAITEFAAECAKPRWDWEAEAANVSL 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + + + + I EK R Q+ ++ V+ +E + E ++ F ++ Sbjct: 243 ADALQSGYAAQIEEAYGISEKMARYAQLGVVRDAAVAALVTEEGEFTEADVTGAFSKLEK 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++VR ++D K R+DGRD++TVR I+ +VGLL +THGS+LF RG+TQAI TLGT D Sbjct: 303 RIVRRRVIDGKPRIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDS 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q D L+G ++ FM+HYNF P + GE RMG RREIGHGRLARR + VLP +FP Sbjct: 363 QMTDGLTGESKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCG+SL++MDAGVP+ PVAGIAMGL+K+ D F +L+DI Sbjct: 423 YTIRVVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT GITA+QMD+KI GI+E IM +AL QA R HIL EM+KV+ Sbjct: 483 GDEDHLGDMDFKVAGTAEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMAKVIG 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +R ++ P + + I P++IR+VIG GG IR I EQTGA +++DDDGTV+I ++ Sbjct: 543 YARPEVSPNAPSMATIKIDPEKIRDVIGKGGATIRSITEQTGASIDLDDDGTVRIYAADK 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A +AA I IT EV+K+YKG+VV++ +FGAFV+ +DGLVHISQ++ ER+ Sbjct: 603 ASSDAALLKIHEITAEAEVDKLYKGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRAV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +D + EG V VK+LD D RG+IKLSMK V + Sbjct: 663 TDFLSEGQEVIVKVLDVDARGRIKLSMKDVTE 694 >gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum EbN1] gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum aromaticum EbN1] Length = 699 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/690 (50%), Positives = 487/690 (70%), Gaps = 12/690 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + + LETG IARQ+ GAV+ +T+VLATVV + K GQDFFPLTV+Y E+ YA Sbjct: 11 YGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYVEKFYAA 70 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVII V+ + E P + + Sbjct: 71 GRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEVDPDIPA 130 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 M+ ASAAL +SG+PF+GP+ +V Y GQY+LNP +++ + S L+L V+GT+ AVLMVE Sbjct: 131 MIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVAGTEAAVLMVE 190 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244 EA +LSE+V+L A++FGH + + I AI++L ++ K +P + ++++E Sbjct: 191 SEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNEPLIARIKELA 250 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVV 303 ++E R++ K R ++I++++K+ + G E+ +F D++A VV Sbjct: 251 GAHLEEAFRITS----KQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHDLEAGVV 306 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L + R+DGRD+ TVR I +VG+L RTHGS+LF RG+TQA+V+ TLGT DEQ + Sbjct: 307 RSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQII 366 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+++G R F++HYNF P +TGE RMG RRE+GHGRLA+RA+ LP F YT+ Sbjct: 367 DAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDFSYTV 426 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+ VAGIAMGL+K+G+ F +L+DI GDE Sbjct: 427 RVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTDILGDE 486 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA GR+HIL M + L+ R Sbjct: 487 DHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQALASHR 546 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ EF PR+ M I P++IR+VIG GG VIRG+ E+TG + + DDG+V I+S S Sbjct: 547 GEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGSVTISSVSAEGA 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+E I +IT EV K+Y G VV+++DFGA V+ RDGL+H+SQ++ ERV +D Sbjct: 607 QLAKEKIEAITAEVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVADY 666 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ 692 VKEG V VK+L+ D+RGKI+LSMK ++DQ Sbjct: 667 VKEGQAVRVKVLETDERGKIRLSMKALLDQ 696 >gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21] gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21] Length = 696 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/687 (50%), Positives = 476/687 (69%), Gaps = 3/687 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 VHTV+ E G+ + +ETG+IA+Q+ GAV+ G+T+VL T V +S K+GQ FFPLTVNY Sbjct: 2 VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QE+ YA G+IPG + +RE RP++NE L R+IDR IRPLF + + N+TQV+ V+ D + Sbjct: 62 QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P ++SM+ ASAALM+S PF GP+ G +V +NG ++ NP +E ++ L++ ++ +Q Sbjct: 122 NDPAILSMIGASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQ 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241 +A+LMVE A ++SE+ +L+AI FGH +P++ A +LAK VI + ++ L+ Sbjct: 182 EAILMVEGSAAEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELK 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + KE ++ + I K R ID + + V+ ++E +E E+ ED++ Sbjct: 242 ARVAALAKEGMKQAVRIKTKVERHLAIDAITAETVAALAAEFEG-SEKEVKGFIEDLEYD 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++ R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV TLGT DEQ Sbjct: 301 LVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G R FM+HYNF P + GE S AP RREIGHG LA RA+ VLP+ FPY Sbjct: 361 RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVS+ITES+GSSSMATVCG SL++MDAG+PI PVAGIAMGL+K+GDDF ILSDI G Sbjct: 421 TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G+TA+QMD+KIGG++ IM AL QAK GR+HIL EM+K ++ Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIAA 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR L F PR+ + + D+IR+VIG GGK IR + E TG ++IDD G + IAS++ Sbjct: 541 SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MIR++T E K+Y G V K+M+FGAFV DGLVH+S+L TERV S Sbjct: 601 ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D++KEGD V VK + D +GKIKLS K Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRK 687 >gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Paris] gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Paris] Length = 729 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/695 (48%), Positives = 483/695 (69%), Gaps = 2/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV+A+ T VL TVV+ + + DFFPLTVNYQE Sbjct: 5 TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++++ LDL ++GT+DA Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 +LMVE EA +LSED++ A+++GH K VI++I +LA+ K + + + L+ Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ + + ++ + I +K R +++D+L+++ +S +E+ N I ++F +++ +V Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD TVR IS + L+RTHGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D +SG R+ FM+HYNF P + GE ++G+P RREIGHGRLA+RA+ VLP T +FPY L Sbjct: 365 DGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR HIL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G +++ S + Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ ER K +V Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAERTQKVEEV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++EG + V + D +G++KL K Q K + Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699 >gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] Length = 707 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/697 (49%), Positives = 488/697 (70%), Gaps = 20/697 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+A+ +T V +VV ++ +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + + +P + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPDVNPDM 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++M+A SAAL +SGLPF GP+ A+V ++N Q+VLNP E ++ LDL VSGT+DAVLM Sbjct: 128 ITMIATSAALAISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLDLVVSGTKDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241 VE EA++LSE+ +L A+++GH++ + VI AI++ A A P+V ++L+ Sbjct: 188 VESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVV-----NAELK 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + L + I EK R ++ +K +V+ +E + +E E+ + ++ Sbjct: 243 ARVADKAETRLSDAYQITEKMARYDEVGSIKNDVVTSLLAEDETLDERELRGMLSSLEKN 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q Sbjct: 303 VVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPY Sbjct: 363 IIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK R HIL+ M + Sbjct: 483 DEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGS 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA++ A Sbjct: 543 HRDDISQFAPRIHTMKISSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGA 602 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 AA+E IR I ++ EV +IY G+V++++DFGAFV GA++GLVHISQ++ ERV Sbjct: 603 ---AAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693 K SD ++ G V VK+L+ D +G+I+LSMK V DQN Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQN 696 >gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis pv. citri str. 306] gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str. 306] Length = 704 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/695 (50%), Positives = 484/695 (69%), Gaps = 6/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ GAV+ +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF+GP+ A+V Y NG+Y+LNP + E + S L+L V+GT +A Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242 VLMVE EA LSE+V+L A+ FGH E + VI I++L +P V +K+ + Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMIAA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + + + + L + + +K R I +KK ++ + + W G++ F +++ Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R +L KVR+DGR +TVR ISA G+L RTHGS+LF RG+TQAIV+ TLGT D Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D++SG + +F+ HYNF P + GE R GAP RREIGHGRLA+R + V+P +FP Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+G+DF++LSDI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ L+ Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS + Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV K Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 D +KEGD V VK+L+ D +G+I+LS+K V++ G Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698 >gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72] gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72] Length = 699 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/693 (49%), Positives = 491/693 (70%), Gaps = 12/693 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + + LETG +ARQ+ GAV+ +TVVLATVV + K GQDFFPLTV+Y E+ YA Sbjct: 11 YGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYVEKFYAA 70 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVI+ V+ + E + + Sbjct: 71 GRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEVDADIPA 130 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 M+AASAAL +SG+PF+GP+ A+V Y +GQY+LNP +++ + S L+L V+GT AVLMVE Sbjct: 131 MIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVAGTASAVLMVE 190 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244 EA++LSE V+L A++FGH + + I AI++L ++ K +P + ++++E Sbjct: 191 SEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAANDALVARVKELA 250 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVV 303 ++E R++ K R +++ +++K+ ++ + ++ +E EI +F ++A V Sbjct: 251 LADVEEAFRITS----KQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFTLEAGTV 306 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ + R+DGRD+ TVR I +VG+L RTHGS+LF RG+TQA+VV TLGT DEQ + Sbjct: 307 RSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQII 366 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+++G + FM+HYNF P +TGE R G RREIGHGRLA+RA+ +LP+ F YT+ Sbjct: 367 DAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSYTI 426 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMA+VCG SLALMDAGVP+ VAGIAMGL+KDG+ F +L+DI GDE Sbjct: 427 RVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLTDILGDE 486 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA GRLHIL +M L +R Sbjct: 487 DHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDALGVAR 546 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ EF PR+ M I P++IR+VIG GG VIR + E+TG + I+DDG++ I+S S Sbjct: 547 GEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISSVSAEGA 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+ I IT EV K+Y+G VV+++DFGA V+ RDGL+H+SQ++ ERV D Sbjct: 607 QKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERVNNVGDY 666 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTG 695 VKEG V VK+L+ D+RGKI+LSMK ++++N G Sbjct: 667 VKEGQAVRVKVLETDERGKIRLSMKALLNENAG 699 >gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium profundum SS9] gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum SS9] Length = 707 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/697 (50%), Positives = 486/697 (69%), Gaps = 20/697 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+A+ +T V +VV ++ +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + E +P + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPEVNPDM 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++M+A SAAL +SGLPF GP+ A+V +IN Q+VLNP E ++ LDL VSGT+DAVLM Sbjct: 128 ITMIATSAALAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLDLVVSGTKDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241 VE EA++LSE+ +L A+++GH++ + VI AI++ A A P+V ++L+ Sbjct: 188 VESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVV-----NAELK 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ L + I EK R ++ +K +V+ +E + +E E+ + ++ Sbjct: 243 ARVADKAATRLSDAYQITEKMARYDEVGSIKNDVVASLLAEDETLDERELRGMLSSLEKH 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q Sbjct: 303 VVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPY Sbjct: 363 IIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK R HIL+ M + Sbjct: 483 DEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGT 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA++ A Sbjct: 543 HRDDISQFAPRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGA 602 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 AA+E IR I ++ EV +IY G+V++++DFGAFV GA++GLVHISQ++ ERV Sbjct: 603 ---AAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693 K SD ++ G V VK+L+ D +G+I+LSMK V DQN Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQN 696 >gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14] gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14] Length = 708 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/685 (50%), Positives = 483/685 (70%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV ++ +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + SP + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 V+M+ SAAL +SG+PF GP+ A+V YIN Q+VLNP ++ ++ LDL V+GT+DAVLM Sbjct: 128 VTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA++LSE+ +L A++FGH++ + I AI++ A A + ++ + L+ ++++ Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTALKNKIAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + L + I EK R +I ++ ++ +E + N EI ++F D++ VVR Sbjct: 248 LAEAKLVDAYQITEKMARYDRIHEIAGEVNDAILAEDAEANSKEIHTIFHDLEKTVVRGR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +D L Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G ++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+V Sbjct: 368 TGETKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK R HIL+ M ++ R + Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EF PR+ M I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ E AA Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604 Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR I ++ EV +IY G+V++++DFGAFV G ++GLVHISQ+S +RV K SD Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+L+ D +G+I+LSMK Sbjct: 665 LQMGQEVQVKVLEIDRQGRIRLSMK 689 >gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis JLW8] gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8] Length = 709 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/698 (49%), Positives = 486/698 (69%), Gaps = 13/698 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T I++ L LETG I+RQ+D AV+ +YG+TVVL V R +K GQDFFPLT Sbjct: 1 MFNKFTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+ V+ Sbjct: 61 VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 D E + +++ ASAA+ LSG+P+ GP+ A+V YIN +YVLNP + ++ LDL V+ Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPYYGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 T+ AV+MVE EA +LSE+V+L A+++GH + + VI+ IS+LA K D+ D+ Sbjct: 181 ATESAVMMVESEAKELSEEVMLGAVVYGHEQMQAVIKMISELAAEAGK-----DAWDWVA 235 Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIV 292 + L E+++ + D+ + I K R +++++ ++++ +E +S E +I Sbjct: 236 PEPDTALIEKVASLAAADINAAFQIKAKGARSAKLEEITSRVLAELITEETSTTEANKIK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + +++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV Sbjct: 296 NEIFNLEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT DEQ +D+L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ Sbjct: 356 TLGTGRDEQIIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAA 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G+ Sbjct: 416 LPAKEDFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNR 475 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+ IM +AL QAK GR HIL Sbjct: 476 VAVLTDILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITAQIMQVALAQAKEGRAHIL 535 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M + +S + ++ +F PR+ M I P++IR+VIG GG VIR + E+TG ++I+DDGT Sbjct: 536 GIMKQAVSGANTEMSQFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEDDGT 595 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 VKIA +S + A+ I IT EV + Y+G V+K++DFGA V +DGL+HISQ+ Sbjct: 596 VKIACTSSEQGAEAQRRIAEITAEVEVGQTYEGTVIKLLDFGAIVTLIPGKDGLLHISQI 655 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + +RV +D +KEGD V VK+++ D++G+++LSMK + Sbjct: 656 AHQRVNAVADFLKEGDVVKVKVVEADEKGRVRLSMKAL 693 >gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T] gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T] Length = 699 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/689 (50%), Positives = 490/689 (71%), Gaps = 4/689 (0%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + + LETG +ARQ+ GAV+ ETVVLATVV + + GQDFFPLTV+Y E+ YA Sbjct: 11 YGAHTVTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYVEKFYAA 70 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPGG+ +RE RP+E EIL SR+IDR IRPLF + NE QVI+ V+ + E + + Sbjct: 71 GRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEIDSDIPA 130 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 M+ ASAAL +SGLPF GPV A+V Y++G+Y+LNP E Q S ++L V+GTQ AVLMVE Sbjct: 131 MIGASAALAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMNLVVAGTQTAVLMVE 190 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 EA +L EDV+L A++FGH + + I+AI+ L ++ K + + L +++++ Sbjct: 191 SEAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEVAGKPEWDWQAPPANAALIAKVTELA 250 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVM 307 K ++ + I K R ++ +++K+++ + ++ + E+ +F ++++ +VR+ + Sbjct: 251 KAEMEEAFRITSKQERSARLSEIRKRVIGQLTEGVENAPSVNELKDLFFNLESGIVRSRI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV TLGT DEQ +D+++ Sbjct: 311 LNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIA 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G + F++HYNF P TGE R G RRE+GHGRLA+R++ +LP+ +F YT+R+VS Sbjct: 371 GEYKERFLLHYNFPPFCTGETGRFGITKRREVGHGRLAKRSLVAMLPKPEEFSYTVRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG SLA+MDAGVP+ VAGIAMGL+KDG+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGNRFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT++GIT +QMD+KI GI++ IM AL+QAK GRLHIL M + L SR Q+ Sbjct: 491 DMDFKVAGTENGITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGLMQQALGTSRGQVS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 E+ PR+ M I P++IR+VIG GG VIR + E+TG + I+DDG+VKI+S S +AA+ Sbjct: 551 EYAPRMINMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSVKISSVSAEGAQAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 I +IT EV K+Y+G VV+++DFGA V+ RDGL+H+SQ++ ERV SD VKEG Sbjct: 611 ARIEAITAEVEVGKVYEGPVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVSDYVKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK-VVDQNTG 695 V VK+L+ D+RGKI+LSMK ++++N G Sbjct: 671 QVVRVKVLETDERGKIRLSMKALLNENAG 699 >gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] Length = 713 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/697 (50%), Positives = 492/697 (70%), Gaps = 11/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + +ETG IARQ+ GAV+ + +TVVLATVV +K GQDFFPLT Sbjct: 1 MFNKVSKTFQYGQQTVTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF + Y NE QVII+V+ Sbjct: 61 VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E P + SM+AASAAL +SG+PF GP+ A+V YI+GQYVLNP + +DL V+ Sbjct: 121 NPEVDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L ED++L A++FGH + K VI+AI +L + K + + +K Sbjct: 181 GTEQAVLMVESEAEELPEDIMLGAVVFGHEQMKVVIDAIDELVRDGGKPEV--EWAPPAK 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291 EE ++++ + +LR + I +K R ++ + + ++E S+ + E+ Sbjct: 239 NEELIAAVTRIAEPELRKAYQIRQKQARSTELRHIYDNVSKTLAAEAQDKGVSAPDSVEV 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV Sbjct: 299 GNIMFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q +D+L G + FMMHYN P ATGE R+G P RREIGHGRLA+RA+ Sbjct: 359 ATLGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIA 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+ VAGIAMGL+K+G+ Sbjct: 419 CLPSQEEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGN 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT +G+ A+QMD+KI GI++ IM +AL QA+ GR+HI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTANGVNALQMDIKIQGITKEIMQVALAQAREGRMHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M + + + + +L +F PR+ + I P++IR+VIG GG VIRG+ E+TGA+++I DDG Sbjct: 539 LSKMQEAMPQFKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRGLTEETGAQIDITDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS A + A+ I +T EV KIY+G V+K++DFGA V +DGL+HISQ Sbjct: 599 VVTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQILPGKDGLLHISQ 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +++ERV +D ++EG V VK+L+ DDRG+IKLSMK Sbjct: 659 IASERVNAVTDYLEEGQAVRVKVLETDDRGRIKLSMK 695 >gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae WPP163] gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae WPP163] Length = 706 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/689 (49%), Positives = 478/689 (69%), Gaps = 2/689 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV ++ K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V Y+N QYVLNP DE + LDL V+GTQ AVL Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGTQGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA LSED +L A++FGH++ + VIE I+ L K + + + LE+ + Sbjct: 188 MVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNISLEQRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q++ +K +V+ +E + N GEI + +I+ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNIEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 G V VK+L+ D +G+++LS+K + T Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIKEANAQT 696 >gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp. SKA34] gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp. SKA34] Length = 708 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/685 (49%), Positives = 484/685 (70%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV ++ +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + +P + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVNPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 V+M+ SAAL +SG+PF GP+ A+V YIN Q+VLNP ++ ++ LDL V+GT+DAVLM Sbjct: 128 VTMIGTSAALTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA++LSE+ +L A++FGH++ + I AI++ A A + ++ + L+ ++++ Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTALKNKIAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + L + I EK R +I ++ ++ +E + N EI ++F D++ VVR Sbjct: 248 LAETKLVEAYQITEKMARYDRIHEIAGEVNDAILAEDAEANTKEIHTIFHDLEKTVVRGR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +D L Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+V Sbjct: 368 TGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK R HIL+ M ++ R + Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 +F PR+ M I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ E AA Sbjct: 548 SQFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604 Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR I ++ EV +IY G+V++++DFGAFV G ++GLVHISQ+S +RV K SD Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+L+ D +G+I+LSMK Sbjct: 665 LQMGQEVQVKVLEIDRQGRIRLSMK 689 >gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0010_01E20] Length = 701 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/694 (50%), Positives = 483/694 (69%), Gaps = 10/694 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + +ET ++A+Q+ G+V+ T G TVVL TVV ++ + GQDFFPLTVNYQE+T Sbjct: 7 EFQYGDETVVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEKT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE QV+ V+ D + P Sbjct: 67 YAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ SAAL +SG+PF+GP+ A+V YI+G Y+LNP + + S L++ V+GT+ AVL Sbjct: 127 IAAMIGTSAALAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLNMTVAGTESAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEE 243 MVE EA +++ED +L A++FGH E + +I+A+++LA + KE D + +K L+E Sbjct: 187 MVESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGKE--AWDWRAAAKDESLQET 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ IK DL + I K R + L++K + + + ++ EI F ++ +V Sbjct: 245 VATTIKTDLGEAYRISNKMERQTAVSALRQKAIEQIAGGDAEYSSDEISDTFAKVEKDLV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +L+ + R+DGRD TVR I +VG+L + HGS+LF RG+TQA+VV TLGT D + Sbjct: 305 RQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALI 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+L G+ ++ FM+HYNF P + GE M P RREIGHG+LARR + LP FPYT+ Sbjct: 365 DALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSASLPNAEDFPYTI 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMA+VCG+SLALMDAGVPI+ PVAG+AMGLVK+G+ + +L+DI GDE Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGNRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGTD G+TA+QMD+KI GI+E IM AL QA R+HIL EM+KV+SESR Sbjct: 485 DHLGDMDFKVAGTDKGVTALQMDIKIEGITEEIMESALAQAHEARIHILGEMNKVISESR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P + M + PD+IR++IG GG IR IVE+TGA+V+I+DDG+V+I + + Sbjct: 545 SELSANAPAMVTMNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAEDASAK 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +AA I+ IT EV +IY+G V +++DFGAFV +DGL+HISQ++ RV SD Sbjct: 605 DAAVARIQEITAEAEVGQIYEGTVARIVDFGAFVTILPGKDGLLHISQIAENRVENVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV----DQN 693 + EG V V +LD D RG+IKLS+K + DQN Sbjct: 665 LSEGQDVEVVVLDVDQRGRIKLSIKELENYRDQN 698 >gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] Length = 707 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/699 (50%), Positives = 487/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + LETG IARQ+ GAV+ + +TVVLATVV +K GQDFFPLT Sbjct: 1 MFNKVSKTFQYGQHTVTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF Y NE QVII+V+ Sbjct: 61 VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E P + SM+AASAAL +SG+PF GP+ A+V YI+GQYVLNP + LDL V+ Sbjct: 121 NPEIDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +L EDV+L A++FGH + K VI+AI +L K + + ++ Sbjct: 181 GTEQAVLMVESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSEGGKPEV--EWAPPAR 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EI 291 EE ++++ + +LR + I +K R ++ + +K+ +SE + E+ Sbjct: 239 NEELIAAVTRIAEPELRKAYQIRQKQARSSELRHIYEKVNQTLASEAEAKGAAAPDSVEV 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ D++A +VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV Sbjct: 299 GNILFDLEAGIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q +D+L G + FMMHYN P ATGE R+G P RREIGHGRLA+RA+ Sbjct: 359 ATLGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVA 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+ VAGIAMGL+K+G+ Sbjct: 419 CLPSQDEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGN 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+ GR+HI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIQGITKEIMQVALAQAREGRMHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + + + + +L +F PR+ M I P++IR+VIG GG VIR + E+TGA+++I+DDG Sbjct: 539 LGKMQEAMPQFKTELSDFAPRLITMRINPEKIRDVIGKGGAVIRALTEETGAQIDINDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS A + A+ I +T E K Y G V+K++DFGA V +DGL+HISQ Sbjct: 599 IVTIASVDAAAGQEAKRRIEELTASVETGKTYDGTVLKLLDFGAIVQILPGKDGLLHISQ 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +++ERV SD ++EG +V VK+L+ D+RG+IKLSMK V Sbjct: 659 IASERVNAVSDYLEEGQSVRVKVLETDERGRIKLSMKAV 697 >gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp. SIP3-4] gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4] gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] Length = 707 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/685 (50%), Positives = 482/685 (70%), Gaps = 3/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L LETG IARQ+DGAV+ +YG+TVVL TVV +K GQDFFPLTV+YQERTY Sbjct: 8 ITYGQHELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE Q++ VM D E + Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEIDSDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAAL +SG+PF GP+ A+V YING+YVLNP + + + LDL V+ T AVLM Sbjct: 128 PAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTATQLKDTELDLVVAATSTAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA +L EDV+L ++++GH + + VI I+++A KEP + + L E+++ Sbjct: 188 VESEAKELPEDVMLGSVVYGHEQMQAVINLINEIAAEVGKEPWDWTPPAENTALIEKITG 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVVRT 305 + D+ + I K R ++D++K +++S +E +S E EI S+ +++AKVVR Sbjct: 248 IASADINAAYQIKSKGARSSKLDEIKSRVLSELITEATSTEEANEIKSILHNLEAKVVRG 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ + R+DGR++ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT DEQ +D+ Sbjct: 308 QILNGEPRIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDA 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ LP +F YT+R+ Sbjct: 368 LQGEYTDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAALPSQEEFGYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G+ +L+DI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDAGVPVKTHVAGIAMGLIKEGNRVAVLTDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG++ GITA+QMD+KI GI+ IM AL QAK GRLHIL M + + E+R + Sbjct: 488 LGDMDFKVAGSEDGITALQMDIKITGITAEIMQAALAQAKEGRLHILGLMKEAMGETRQE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L F PR+ M I P++IR+VIG GG VIR + E+TG ++I++DGT+KI +S E Sbjct: 548 LSAFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAEAGEE 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+ I +IT E+ + Y+G V+K++DFGA V +DGL+HISQ++ +RV D +K Sbjct: 608 AKRRIEAITAEVEIGQTYEGTVIKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVGDFLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 EG V VK+++ D++G+++LSMK + Sbjct: 668 EGQVVKVKVMEADEKGRVRLSMKAL 692 >gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 706 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/692 (49%), Positives = 487/692 (70%), Gaps = 2/692 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ + + +ETG IARQ+ GAV+ + +TVVL +VV +++ K GQDFFPLT Sbjct: 1 MFNIVKKTFAYGAHQVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + +E QV+ VM Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179 + E P + +++ ASAA+ +SG+PF+GP+ A+V Y++GQYV+NP + + SL DL V+ Sbjct: 121 NPEIDPDIAALIGASAAMTISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238 GTQ AVLMVE EA +LSE+V+L A++FGH + + VI+AI++LA K E + Sbjct: 181 GTQAAVLMVESEAKELSEEVMLGAVVFGHQQMQVVIDAINELADEAGKPEWDWTPAARNE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +++Q+++ +L+ + I K +R +++ ++ V +++ + + + ++ + Sbjct: 241 AVHGKLNQLVEAELQEAYRITSKQLRSQRLKEVTAYAVETLTADDDAPDANAVRNMVSAV 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A++VR +L + R+DGRD+ TVR I+ + G+L R HGSSLF RG+TQAIVV TLGT Sbjct: 301 EARIVRGRILAGEPRIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+LSG R FM+HYNF P ATGE R+G P RRE+GHGRLA+RA+ VLP Sbjct: 361 DEQIIDALSGEYRERFMLHYNFPPYATGECGRVGTPKRREVGHGRLAKRALLAVLPAPED 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGL+K+G+ +L+D Sbjct: 421 FSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA RLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAGEARLHILKQMQGS 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S R ++ + PR+ M I P++IR+VIG GG VIR I E+TG ++I DDGT+ IAS Sbjct: 541 MSGHREEVSTYAPRLYTMKINPEKIRDVIGKGGAVIRAITEETGTTIDIKDDGTITIASV 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S AAR I SIT EV K+Y G V+K++DFGA V RDGL+HISQ++ ERV Sbjct: 601 SGEAASAARARIESITADVEVGKVYDGTVLKLLDFGAIVSILPGRDGLLHISQIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +D +K+G V VK+L+ D++G+++LSMK + Sbjct: 661 AVADYLKDGQKVRVKVLEADEKGRVRLSMKAL 692 >gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter tundripaludum SV96] gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter tundripaludum SV96] Length = 692 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/688 (51%), Positives = 482/688 (70%), Gaps = 8/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ R +KLETG IARQ+DGAV+ T +L TVV + G DFFPLTVNYQE+ Sbjct: 7 EFQYGDRLVKLETGEIARQADGAVMIDVDGTTLLVTVVGKKQASGG-DFFPLTVNYQEKA 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+I V+ + E P Sbjct: 66 YAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLNPEVDPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR---LDEDQGSLDLFVSGTQDA 184 + +++ ASAAL +SGLPF GPV A V Y +G+Y+LNP L E Q L+L V+GT A Sbjct: 126 IPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPTPAALKESQ--LELVVAGTAHA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 VLMVE EA+ LSE+V+L A++FGH + + I AI++ A + + + ++L++ Sbjct: 184 VLMVESEADNLSEEVMLGAVLFGHQQMQVAINAINEFAAAAGAGVVEWVAPEVNAELKKL 243 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ ++ ++ + + EK VR +Q+ +++ +V + + + E +I + E ++ +V Sbjct: 244 VTAEVEAGIKAAYQVAEKLVRQEQLKEIRNAVVEKLVA-NGEYAESDIRGIIEHLEYSIV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +L++ R+DGR+ + +R I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ D Q + Sbjct: 303 RNAILNEGKRIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRDAQII 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+L+G + FM+HYNF P + GE +G+P RREIGHGRLA+R + VLP +FPYT+ Sbjct: 363 DALAGEYKEPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVAAVLPNMEEFPYTI 422 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+TES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGL+K+GD F +LSDI GDE Sbjct: 423 RVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDSFAVLSDIMGDE 482 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAG+ GITA+QMD+KI GI+ IM AL QAK GRLHIL EM+K LS +R Sbjct: 483 DHLGDMDFKVAGSVDGITALQMDIKIDGITAEIMKSALDQAKHGRLHILGEMNKALSTTR 542 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ +F PR+ I P +IR VIG GG IR I EQTGA V++ DDG VK+AS A Sbjct: 543 EEMSDFAPRIITFKIDPSKIREVIGKGGATIRSITEQTGASVDLTDDGVVKVASVDKAAG 602 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR MI IT EV K+Y+G+VV++MDFGAFV +DGLVHISQ+S ERV K SD Sbjct: 603 EEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISDERVDKVSDR 662 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 + EGD V VK+L+ D +G+++LSMK V+ Sbjct: 663 LNEGDVVKVKVLEIDRQGRVRLSMKEVE 690 >gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 729 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/695 (48%), Positives = 481/695 (69%), Gaps = 2/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV+A+ T VL TVV+ + + DFFPLTVNYQE Sbjct: 5 TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++++ LDL ++GT+DA Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243 +LMVE EA +LSED++ A+++GH K VI++I +LA+ K + + L+ Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ + + ++ + I +K R +++D+L+++ +S +E+ N I ++F +++ +V Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD TVR IS + L+RTHGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D +SG R+ FM+HYNF P + GE ++G+P RREIGHGRLA+RA+ VLP +FPY L Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR HIL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G V++ S + Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVVQLFSPDKMAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ +R K +V Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++EG + V + D +G++KL K Q K + Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699 >gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] Length = 702 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/692 (50%), Positives = 473/692 (68%), Gaps = 3/692 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T ++ + LETGR+ARQ+ G+VL T G+ VLATVV +S + GQ FFPL+V+Y Sbjct: 3 ITTKTFQFGKDTVTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+I VM + + Sbjct: 63 QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTD 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181 + + M+A SAAL +SG+PF GP+ A+V + + YVLNP E GSL D+ V+GT Sbjct: 123 TDADIAGMLATSAALSVSGIPFNGPIGAARVGFNDDDGYVLNPSYSELDGSLLDMVVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240 +DAVLMVE EA +L+ED +L A++F H E + + AI++ A K ++ + L Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLFAHKELQAAVSAITEFAAEAGKPRWEWSAEPENETL 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + +++ + + + I EK R ++D+++ V SE + E ++ F ++ Sbjct: 243 KAAITEGFADQVEAAYGISEKMARYSKLDEVRTAAVEALVSEEAGVEEADVTKAFAKLEK 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR +++ K R+DGRD++TVR I +VGLL +THGSSLF RG+TQAI TLGT D Sbjct: 303 NTVRRRVIESKPRIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q D L+G ++ FM+HYNF P + GE RMG RREIGHGRLARR + VLP +FP Sbjct: 363 QMSDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEEEFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+ PVAGIAMGLVK+ D F +L+DI Sbjct: 423 YTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA R HIL EMSKV+ Sbjct: 483 GDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMSKVIG 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +R ++ P + + I P++IR+VIG GG IR I E TGA +++DDDGTV+I ++ Sbjct: 543 YARPEVSPNAPSMASIKIDPEKIRDVIGKGGATIRSITELTGASIDLDDDGTVRIYAADK 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A +AA I IT EV+KIYKG V ++ +FGAFV +DGLVHISQ++ ER+ Sbjct: 603 ASSDAALVRIYEITAEAEVDKIYKGTVARLAEFGAFVTILPGKDGLVHISQIAEERIRAV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SD ++EG V VK+LD D RG+IKLSMK V + Sbjct: 663 SDFLEEGQEVLVKVLDVDARGRIKLSMKDVSE 694 >gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 729 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/695 (48%), Positives = 482/695 (69%), Gaps = 2/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV+A+ T VL TVV+ + + DFFPLTVNYQE Sbjct: 5 TKEIVFGNHNLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++++ LDL ++GT+DA Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 +LMVE EA +LSED++ A+++GH K VI++I +LA+ K + + + L+ Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ + + ++ + I +K R +++D+L+++ +S +E+ N I ++F +++ +V Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD TVR IS + L+RTHGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D +SG R+ FM+HYNF P + GE ++G+P RREIGHGRLA+RA+ VLP +FPY L Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR HIL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G +++ S + Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ +R K +V Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++EG + V + D +G++KL K Q K + Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699 >gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] Length = 715 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/701 (49%), Positives = 489/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + LETG IARQ+ GAVL + +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE QVI++ + Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V YI+GQYVLNP + Q S ++L V+ Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMNLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA LSE+V+L ++FGH++ + I AI L K +P + Sbjct: 181 GTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAINAIHDLVAEAGKPEWDWQPAPANE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI----DDLKKKMVSYFSSE-HSSWNEG 289 ++ +E L+ + + EK R ++ ++K K+ + +++ + + Sbjct: 241 ALAIA----VASAAQEGLQAAYLVREKQARTTKLREVYAEVKAKLAEHATAKCEDAPDNV 296 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 E+ ++ D++AK+VR +L+ + R+DGRD+ TVR IS +G+L R HGS+LF RG+TQA+ Sbjct: 297 EVENMLFDLEAKIVRGQILNGEPRIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT++DEQ +DS+ G R+ FM+HYNF P ATGE R G+P RREIGHGRLA+RA+ Sbjct: 357 VVATLGTKQDEQIIDSIMGEHRDRFMLHYNFPPFATGETGRFGSPKRREIGHGRLAKRAL 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP+ F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+KD Sbjct: 417 VSSLPEAQDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKD 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G F +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+ IM +AL QAK GRL Sbjct: 477 GGKFAVLTDILGDEDHLGDMDFKVAGTVTGITALQMDIKIQGITREIMQVALAQAKEGRL 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + L SR +L EF PR+ + I P++IR+VIG GG IR + E+TG +++I D Sbjct: 537 HILGKMKEALDGSRTELSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDIGD 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DGT+ I+S+ L + A I+ +T EV + Y+G V++++DFGA V RDGL+HI Sbjct: 597 DGTITISSADLDKAREAERRIKELTADVEVGQEYEGPVLRLLDFGAIVQVLPGRDGLLHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+++ R+A +DV+K G TV +K+++ DD+G+++LSMK + Sbjct: 657 SEIANYRIANINDVLKVGQTVRIKVIEADDKGRLRLSMKAI 697 >gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 735 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/702 (50%), Positives = 485/702 (69%), Gaps = 17/702 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++ ++LETG IARQ+ GAV+ +TVVLATVV + +K GQDFFPLT Sbjct: 14 MFNKVVKSFKYGDHNVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 73 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+ Sbjct: 74 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 133 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + SM+AASAAL +SG+PF GP+ A+V YIN +YVL P L + + S LDL V+ Sbjct: 134 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 193 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH + + VIEAI +L + K P+ D++ Sbjct: 194 GTERAVLMVESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEEAGK-PLW----DWAP 248 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV-RCKQ---------IDDLKKKMVSYFS-SEHSSWNE 288 E + + V I E Y R KQ DD+ +K+ + E + E Sbjct: 249 AERNQQLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGE 308 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ ++ +++A VR +L + R+DGRD+ TVR I + G+L R HGS+LF RG+TQA Sbjct: 309 NEVANILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQA 368 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT++DEQ VD L+G QR FM+HYN P ATGE R+G+P RREIGHGRLA+RA Sbjct: 369 LVVTTLGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 428 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + VLP F YT+R+VSEI ES+GSSSMA+VCG L+L+DAGVP+ VAG+AMGL+K Sbjct: 429 LTAVLPNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIK 488 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+ F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR Sbjct: 489 EGNKFAVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGR 548 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL +M + + + +L + PR+ I PD+IR+VIG GG VIR + E+TG ++NI+ Sbjct: 549 MHILGKMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIE 608 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV IAS A AR + + EV K+Y+G+V +++DFGA V RDGL+H Sbjct: 609 DDGTVTIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLH 668 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ISQ++ ERV + SD +KEG TV VK+L+ DD+ +I+LSMK + Sbjct: 669 ISQIAHERVNQVSDYLKEGQTVRVKVLEIDDKDRIRLSMKAL 710 >gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter aphrophilus NJ8700] gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter aphrophilus NJ8700] Length = 709 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/683 (49%), Positives = 477/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP ++E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ F++E EG+I+ +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDVIKADVIAQFTAEDEEVAEGKIIDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA+ ++ Sbjct: 547 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I IT E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVMVKVVEIDRQGRIRLTMK 689 >gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica KT99] gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica KT99] Length = 702 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/685 (51%), Positives = 476/685 (69%), Gaps = 10/685 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQERTYA Sbjct: 9 EYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D E +P V+ Sbjct: 69 AGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +SGLPF GP+ A+V YING+Y+LNP + + + LDL V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAGTEGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMSQ 246 E EA L+E+V+L ++ +GH + + VI AI +L K A +P + S L ++ Sbjct: 189 ESEAASLAEEVMLGSVAYGHEQQQVVITAIKEL-KAEAGKPAWDWTAPVSDEDLVAKIKA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + +E + I +K R ++ LK + +E++ + E+ + ++ +VVR Sbjct: 248 LAEEKFSAAYQIADKSERRDAVNALKSDAIEKLVAENADVDLREVGKILSSVEKQVVRGR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L K R+DGR+ + VR ++ G+L RTHGS++F RG+TQA+V TLGT D Q VDS+ Sbjct: 308 ILAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSI 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G N FM+HYNF P GE +G+P RREIGHG+LA R + V+P +FPY++R+V Sbjct: 368 MGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEFPYSIRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + R + Sbjct: 488 GDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAIGTHRDDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 PR+ I+ I P++IR+VIG GG IR + E+TG + ++DDGTVKIASS+ EA Sbjct: 548 SAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSNS---EAT 604 Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR I ++ EV IY G+VV+++DFGAFV +DGLVHISQ++ ERVA SD Sbjct: 605 KEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+++ D +G+++LSMK Sbjct: 665 LQTGQEVKVKVMEVDRQGRVRLSMK 689 >gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] Length = 715 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/706 (49%), Positives = 490/706 (69%), Gaps = 12/706 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + + + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R +LDL V+ Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A++FGH + + I+AI L + K D + K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAIDAIHDLVREGGKPEW--DWQPAPK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291 E ++++ + DL + I +K R ++ ++ + + E ++ ++ + Sbjct: 241 NEPLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 IVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + N G P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL-LNEGAP 705 >gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] Length = 715 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/708 (49%), Positives = 492/708 (69%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + + + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R +LDL V+ Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A++FGH + + I+AI L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEW--DWQPAAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291 E ++++ + DL + I +K R ++ ++ + + E ++ ++ + Sbjct: 241 NEPLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + D +G P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAASGAP 708 >gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica PV-4] gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4] Length = 700 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/696 (50%), Positives = 481/696 (69%), Gaps = 32/696 (4%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV ++ + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVII V+ D E SP V+ Sbjct: 69 AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V Y++G+Y+LNP + + + S L+L V+GT++AVLMV Sbjct: 129 SMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAGTENAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------EPIVIDSKDF 237 E EA+ L E+V+L A+++GH + + VI+AI +L K E +V KD Sbjct: 189 ESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEELVAKVKDL 248 Query: 238 SK--LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 ++ L E ++K+D R Q+D +K +E+ + EI + Sbjct: 249 AEAGLTEAYQIVVKQD------------RYAQVDVVKTAAKEALLAENPDADAREIDGLL 296 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++ KVVR+ ++ R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLG Sbjct: 297 GSLEKKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLG 356 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +DS+ G Q + FM+HYNF P + GE +G+P RREIGHG+LA R IH V+P Sbjct: 357 TERDAQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPT 416 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++ Sbjct: 417 AEEFPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVV 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R ++ + PR+ + I P++IR+VIG GG IR + E+TG + ++DDGTVKI Sbjct: 537 DQAISGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKI 596 Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 AS A +A +E IR I ++ EV +Y G+VV+++DFGAFV +DGLVHISQ+ Sbjct: 597 AS---ANGDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQI 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + ERVA SD ++ G V VK+++ D +G+++LSMK Sbjct: 654 AEERVANVSDYLEVGQEVKVKVMEVDRQGRVRLSMK 689 >gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 708 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/685 (49%), Positives = 483/685 (70%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV ++ +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + SP + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 V+M+ SAAL +SG+PF GP+ A+V YIN Q+VLNP ++ ++ LDL V+GT+ AVLM Sbjct: 128 VTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTEAAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA++L+E+ +L A++FGH++ + VI+AI++ A A + + + L+ ++++ Sbjct: 188 VESEADRLTEEQMLQAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPAENTALKNKIAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + L + I EK R +I ++ ++ +E N EI ++F D++ VVR Sbjct: 248 LAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLAEDVEANTKEIHTIFHDLEKTVVRRS 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +D L Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDEL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+V Sbjct: 368 TGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK R HIL+ M ++ R + Sbjct: 488 GDMDFKVAGTEDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EF PR+ M I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ E AA Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604 Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR I ++ EV +IY G+V++++DFGAFV G ++GLVHISQ+S +RV K SD Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+L+ D +G+I+LSMK Sbjct: 665 LQMGQEVKVKVLEIDRQGRIRLSMK 689 >gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] Length = 713 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/686 (51%), Positives = 478/686 (69%), Gaps = 4/686 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + ++ + LETG +ARQ+ AV+A+ +T VL +VV + ++GQDFFPLTVNYQE Sbjct: 5 TKQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA GKIPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+ V+ + + S Sbjct: 65 KTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P +V+M+ SAAL +SG+PF GP+ A+V IN +YVLNP DE + LDL V+GTQ A Sbjct: 125 PDLVAMIGTSAALAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLDLVVAGTQQA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242 VLMVE EAN LSED +L A++FGH + VI+AI++ A+ KE + KD + L E Sbjct: 185 VLMVESEANLLSEDTMLGAVMFGHESMQVVIDAINEFAQEAGKEKWDWQAPQKD-ATLVE 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ + + + + I +K R +I ++K+ M+ +E+ + E +F D++ + Sbjct: 244 KVKSLAEAGIGEAYRITDKAERYGKIAEVKQAMIEQLVAENEEADTDEAGKIFHDVEKDI 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ +L + R+DGRD + VR IS G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRSRILAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQM 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L+GT + F++HYNF P GE +GAP RREIGHGRLA+R I V+P +FPYT Sbjct: 364 IDELTGTSTSRFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+GD ++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAG + GITA+QMD+KI GI+ +IM AL QAK RLHIL+ M + + E Sbjct: 484 EDHLGDMDFKVAGNNEGITALQMDIKIDGITRDIMESALGQAKAARLHILSVMDEAIGEH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + PR + I D+I++VIG GG VIR + E T + I DDGT+KIA+S + Sbjct: 544 RDELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKIAASDQND 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +AA + I+ +T EV KIY+G+V +++DFGAFV +DGLVHISQ++ ERV +D Sbjct: 604 ADAAIKRIKELTAEIEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVNDVND 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 +K GDTV VK+L+ D +G+++LSMK Sbjct: 664 YLKVGDTVPVKVLEIDRQGRVRLSMK 689 >gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] Length = 713 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++ A A + ++ Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L ++++ + L + I EK R +I + ++ +E N EI ++F D Sbjct: 241 TALNNRIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R ++ EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I +IT EV KIY G+V ++ DFGAFV +DGLVHISQ++ ERV Sbjct: 601 TDGDQAKDAIARIEAITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAHERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +D +KEG V VK+L+ D +G+++LSMK Sbjct: 661 EKVTDYLKEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP 102972] gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP 102972] Length = 711 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/691 (49%), Positives = 481/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA LSE+ +L A++FGH++ + VI+AI++ A A + ++ Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ + +E+ N EI ++F D Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ DDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + +F PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + + A I IT EV KIY G+V ++ DFGAFV +DGLVHISQ++ +R+ Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SDV+ EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] Length = 700 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/694 (50%), Positives = 478/694 (68%), Gaps = 13/694 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETGRIARQ+ GAV+ +TVVL TVV + + +DF PLTVNYQERTY Sbjct: 8 FQYGDHTVTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPRDFLPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L+SR+IDR +RPLF + NE Q++ V+ + E + Sbjct: 68 AAGKIPGGFFKREGRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDADI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ASAAL +SG+PF+ P+ +V Y G +VLNP + + S LDL V+GT DAVLM Sbjct: 128 PAMIGASAALAVSGIPFDSPLGAGRVGYHKGAFVLNPTFSQLESSDLDLVVAGTADAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EAN LSE +LDA+IFGH + + VI AI++LA+ K P+ D + L E Sbjct: 188 VESEANCLSEQTMLDAVIFGHEQMQTVIAAINELAQEAGKPRWDWAPVEKDQRLAQALTE 247 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQ 299 + + E RV+ EK R ++ +++++++ + W+E EI + F+ ++ Sbjct: 248 IAERPLGEAYRVA----EKQERLDRVSAVREEVMTRLTLGEEPTEGWSEREIGNAFKGLE 303 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K+VR +L + R+DGRD++TVR IS +V L RTHGS++F RG+TQAIVV TLGT D Sbjct: 304 KKIVRGSILRGEPRIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRD 363 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ G ++ FM+HYNF P + GE MG P RREIGHGRLA+R I V+P + Sbjct: 364 AQIIDAIEGERKEPFMLHYNFPPYSVGETGFMGVPKRREIGHGRLAKRGIQAVMPSQEEC 423 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSEITES+GSSSMATVCG+SLALMDAGVPI PVAGIAMGL+K+ +F +L+DI Sbjct: 424 PYVIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLIKEESEFAVLTDI 483 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+ IM +AL+QA+ GRLHIL++M+ V+ Sbjct: 484 LGDEDHLGDMDFKVAGTEEGVTALQMDIKINGITRQIMEVALEQARTGRLHILSKMNAVI 543 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 ++ R ++ + PR+ M I P++IR+VIG GG IR + E+TG ++I DDGTV IAS Sbjct: 544 AKPRGEMSAYAPRLLTMKIDPEKIRDVIGKGGATIRQLTEETGTTIDIVDDGTVTIASVD 603 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A E AR I +T EV +IY+G+V K+MDFGAFV+ RDGLVHISQ+S RV Sbjct: 604 KAAGEEARRRIELLTADVEVGRIYEGRVTKLMDFGAFVNILPGRDGLVHISQISNRRVES 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S+ + EG V VK+L+ D +G+I+LS+K +++ Sbjct: 664 VSEELAEGQRVRVKVLEVDRQGRIRLSIKAINEG 697 >gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 706 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/683 (49%), Positives = 477/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV ++ K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V Y+N QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I+ L K + + + LE+ + Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNVSLEQRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K + + +E + N GEI + +++ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVEAALLAEDETLNAGEIQEILGNVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ ++FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690 >gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis SB2B] gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis SB2B] Length = 699 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/689 (50%), Positives = 480/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+DGAV+A+ G+T VL TVV + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF + NE QVII V+ D + P +V Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDIV 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V Y+NG+YVLNP E GS LDL V+GTQ AVLMV Sbjct: 129 SMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAGTQSAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242 E EA L E+V+L A+++GH++ + VI AI++ A K P+ ++ L Sbjct: 189 ESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWNWTAPVKNEA-----LVA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ +E L + I K R + + ++KK ++ + N E + ++ V Sbjct: 244 QIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKLQEANPDVNVREAADLLGSLEKNV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + + Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSA 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + +F PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIAS++ Sbjct: 544 RPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASNNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +A RE IR I ++ EV ++Y G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -DATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLQLNQEVTVKVMEVDRQGRVRLSIK 689 >gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium SWAT-3] gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium SWAT-3] Length = 706 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/694 (50%), Positives = 481/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 SGT AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A A + ++ Sbjct: 181 SGTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L ++++ + L + I EK R +I ++ ++ SE N E+ S+F D Sbjct: 241 TALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSEDEEVNLKEVHSIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G ++++F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY+G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691 >gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] Length = 709 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/698 (48%), Positives = 482/698 (69%), Gaps = 13/698 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T I++ L LETG I+RQ+D AV+ +YG+TVVL V +K GQDFFPLT Sbjct: 1 MFNKVTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+ V+ Sbjct: 61 VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 D E + +++ ASAA+ LSG+PF GP+ A+V YIN +YVLNP + ++ LDL V+ Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 T+ AV+MVE EA +LSE+V+L A++FGH + + VI+ I++LA K D+ D+ Sbjct: 181 ATETAVMMVESEAKELSEEVMLGAVVFGHEQMQAVIKMIAELAAEAGK-----DAWDWVA 235 Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIV 292 + L +++++ D+ + I K R ++ ++ +++ +E +S E +I Sbjct: 236 PEPDTALIAKVAELAAADINAAFQIKAKGARSAKLSEITSRVLGELITEETSTAEANKIK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV Sbjct: 296 GELFNLEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT DEQ +D+L G ++ FM+HYN P ATGE R+G P RREIGHGRLA+R++ Sbjct: 356 TLGTGRDEQVIDALQGEFKDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRSLIAA 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G+ Sbjct: 416 LPDQADFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNR 475 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+ IM +AL QAK GR HIL Sbjct: 476 VAVLTDILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITSQIMQVALAQAKEGRAHIL 535 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M +S + ++ F PR+ +M I P++IR+VIG GG VIR + E+TG ++I +DGT Sbjct: 536 GIMKAAMSSANTEMSAFAPRIIVMKINPEKIRDVIGKGGAVIRALTEETGTSIDITEDGT 595 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 VKIA +S + A+ I IT E+ +Y+G V+K++DFGA V +DGL+HISQ+ Sbjct: 596 VKIACTSSEQGAEAQRRIAEITAEVEIGNVYEGTVLKLLDFGAIVSLIPGKDGLLHISQI 655 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + +RV SD +KEGD V VK+++ D++G+++LSMK + Sbjct: 656 AHQRVNAVSDFLKEGDIVKVKVVEADEKGRVRLSMKAL 693 >gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus denitrificans ATCC 25259] gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus denitrificans ATCC 25259] Length = 706 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/683 (50%), Positives = 481/683 (70%), Gaps = 14/683 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG IARQ+ GAV+ +T+VL TVV +K GQDFFPLTV+YQE+TYA G+IPG Sbjct: 15 VTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAAGRIPG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RESRP+E E LISR+IDR IRPLF + + NE Q+I VM + E S + +++ AS Sbjct: 75 GFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADIPALIGAS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL LSGLPF+GPV A+V +ING+YVLNP E + S LDL V+GT+ AVLMVE EA + Sbjct: 135 AALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAGTESAVLMVESEAME 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE------MSQMI 248 L ED++L A++FGH + + I AI++LA D+ D++ E+ + + Sbjct: 195 LPEDIMLGAVVFGHTQMQAAINAINELADEAGA-----DAWDWAPPAEDTAMVDRLKALA 249 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 ++ L+ + I +K R +D+++ K +++ + + F ++A VVR + Sbjct: 250 EDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRLEAGVVRNRI 309 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 L + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT DEQ +D+L Sbjct: 310 LSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALE 369 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G+ + FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ VLP +F YT+R+VS Sbjct: 370 GSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMRVVS 429 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG L+LMDAG P+ VAGIAMGL+K+G+ F +L+DI GDEDHLG Sbjct: 430 EITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTDILGDEDHLG 489 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT++G+TA+QMD+KI GI++ IM AL QAK GR+HIL M +SE+ ++ Sbjct: 490 DMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKASVSETH-EMS 548 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 + PR+ M I P++IR+VIG GG VIR + E+TG +++I +DG+VKIA +S+ E A+ Sbjct: 549 AYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACTSMEAGELAK 608 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT EV K+Y+G V+K++DFGA V+ RDGL+HISQ++ ERV D +KEG Sbjct: 609 KRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNTIGDYLKEG 668 Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690 V VK+L+ D++G+++LSMK + Sbjct: 669 QVVRVKILEADEKGRLRLSMKAL 691 >gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 743 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 41 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 101 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +INGQ+VLNP ++E Q LDL V+GT AVL Sbjct: 161 LVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAVL 220 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A+++GH + + VIEAI +L K + + + L ++ Sbjct: 221 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTALINKVK 280 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+I+ +F +++++VR Sbjct: 281 ALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQIVRG 340 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 341 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 400 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 401 LTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 460 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI GDEDH Sbjct: 461 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 520 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 521 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 580 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA+ ++ Sbjct: 581 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 640 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I IT EV YKG+V+++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 641 VMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 700 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 701 VGQEVMVKVVEIDRQGRIRLTMK 723 >gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b] Length = 729 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/695 (47%), Positives = 480/695 (69%), Gaps = 2/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV+A+ T VL TVV+ + + DFFPLTVNYQE Sbjct: 5 TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++++ LDL ++GT+DA Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243 +LMVE EA +LSED++ A+++GH K VI++I +LA+ K + + L+ Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ + + ++ + I +K R +++ +L+++ +S +E+ N I ++F +++ +V Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERSIV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD TVR IS + L+RTHGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D +SG R+ FM+HYNF P + GE ++G+P RREIGHGRLA+RA+ VLP +FPY L Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR HIL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G +++ S + Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ +R K +V Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++EG + V + D +G++KL K Q K + Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699 >gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea DSS12] gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea DSS12] Length = 705 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/689 (50%), Positives = 479/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQERTYA Sbjct: 12 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D E +P V+ Sbjct: 72 AGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +SGLPF GP+ A+V YING+Y+LNP + + + LDL V+GTQ AVLMV Sbjct: 132 SMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLIVAGTQAAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEE 242 E EA L E+++L ++ +GH + + VI+A+++L K A +P + D+S L E Sbjct: 192 ESEAASLPEEIMLGSVAYGHEQLQVVIDAVTEL-KAEAGKP----AWDWSAPVADADLVE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ + + D + I K+ R ++ LK ++ E++ + E+ + ++ KV Sbjct: 247 KIRVLAEADFAAAYQITTKHERRDAVNALKSVAIAKLVEENADIDLSEVGKLLASLEKKV 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGR+ + VR ++ G+L RTHGS++F RG+TQA+V TLGT D Q Sbjct: 307 VRGRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQK 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 VDS+ G N FM+HYNF P GE +G+P RREIGHG+LA R ++ V+P FPY+ Sbjct: 367 VDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDFPYS 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 427 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGTH 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + PR+ + I P++IR+VIG GG IR + E+TG + +DDDGTVKIASS+ Sbjct: 547 RDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG-- 604 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV IY G+VV+++DFGAFV +DGLVHISQ++ ERVA Sbjct: 605 -EATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ G V VK+++ D +G+++LSMK Sbjct: 664 VSDYLQTGQEVKVKVMEVDRQGRVRLSMK 692 >gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae] Length = 708 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/687 (49%), Positives = 480/687 (69%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K+GQDFFPLTVNYQER+ Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERS 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL +SG+PF GP+ A+V YI+ QYVLNP +DE + S LDL V+GT AVL Sbjct: 128 IVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVAGTSSAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241 MVE EA+ L+E+ +L A++FGH + + VIE I+ LA KE P I+ + S++ Sbjct: 188 MVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINEELHSRIA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E Q + + R++ EK R +D +K+ + + +E+ S + EI + ++ K Sbjct: 248 ELAEQRLGDAYRIT----EKQERYTNVDAIKEDVTNTLLAENESLDVAEINDILSGLEKK 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRTRVLKGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPY Sbjct: 364 VIDELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQSEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ DD+++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDYVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEEAINR 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I PD+I++VIG GG VIR + E+TG + IDDDGTVKIA++ + Sbjct: 544 PREEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGTTIEIDDDGTVKIAATDSS 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + EAA I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAEAAIRRIEDITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAEKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+I+LS+K Sbjct: 664 DYLQLGQEVPVKVLEIDRQGRIRLSIK 690 >gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 743 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 41 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 101 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +INGQ+VLNP ++E Q LDL V+GT AVL Sbjct: 161 LVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAVL 220 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A+++GH + + VIEAI +L K + + + L ++ Sbjct: 221 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTALINKVK 280 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+I+ +F +++++VR Sbjct: 281 ALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEISEGKIIDIFTALESQIVRG 340 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 341 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 400 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 401 LTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 460 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI GDEDH Sbjct: 461 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 520 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 521 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 580 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA+ ++ Sbjct: 581 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 640 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I IT EV YKG+V+++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 641 VMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 700 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 701 VGQEVMVKVVEIDRQGRIRLTMK 723 >gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp. Marseille] gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 711 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/703 (50%), Positives = 487/703 (69%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E P + +M+ ASAAL ++G+PF GPV A+V YI+GQYVLNP + + LDL V+ Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI L + K + + Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293 L ++ + LR + +K R ++ D ++ + ++E +S + E+ + Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT DEQ +D+L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ L Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G F Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540 Query: 534 EMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 EM K V S + +L +F PR+ + I P++IR+VIG GG VIR + E+TG +++I D+G Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS A + A+ I +T EV KIY+G V+K++DFGA V +DGL+HISQ+ Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693 + ERV +D ++EG V VK+L+ DDRG++KLSMK V ++N Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSMKAAVAEEN 703 >gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] Length = 719 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/700 (49%), Positives = 479/700 (68%), Gaps = 12/700 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG IARQ+DGAVLA+ T VL TVV + +G DFFPLTVNYQE Sbjct: 5 TKEIAFGDHTLVLETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVGKIPGG+ +RE RP+ENE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAVGKIPGGFNKREGRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPEIS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++ LDL V+GT+DA Sbjct: 125 SDIIAMIGASAALAISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLVVAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFS 238 +LMVE EA +LSEDV+ AI+FGH K VI+AI +LA K P V ++ Sbjct: 185 ILMVESEAKELSEDVMRGAIMFGHEMMKSVIKAIEELAGEAGKARWDWAAPAVDEN---- 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L+ ++ + K D+ + I +K R +++ LK++ ++ +E+ I ++F D+ Sbjct: 241 -LQVRIADIAKHDVEAAYLIKDKQERYQRLGVLKEQTIAALLAENEELKADVIGNMFGDL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VRT +LD + R+DGRD +TVR I+ + LL+RTHGS LF RG+TQAIVV TLG Sbjct: 300 ERATVRTRILDGEPRIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNER 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ ++ FM+HYNF P + GE +G+P RREIGHGRLA+RA+ VLP+ + Sbjct: 360 DAQMLDGINVESKDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVLPEASA 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY LR+VSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD F +L+D Sbjct: 420 FPYVLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR+HIL M+ Sbjct: 480 ILGDEDHLGDMDFKVAGTEQGITALQMDIKITGITSEIMEQALEQALAGRIHILGIMNNA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+E R +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G V++ S Sbjct: 540 LAEHREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDTGVVQLFSP 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + +E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ +R Sbjct: 600 DMDALEEAQKQIKALIAEVEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQ 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K DV+KEG + V + D +G++KL K Q P+ Sbjct: 660 KVEDVLKEGQEIEVFVAGVDKQGRVKLEWKDKPQTEVAPV 699 >gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 705 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/696 (49%), Positives = 474/696 (68%), Gaps = 5/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV + E AGR + ETGR+ARQ+ G++LA G+ VV + G DF PLT Sbjct: 9 MFDVKKTQAEVAGRTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMPLT 68 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+ GG+ +RE RP+E E L SR+IDR IRPLF K Y +ETQVI VM Sbjct: 69 VHYQEKTYAAGRFLGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSV 128 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P +V++ SAAL +S +PF P+ ++V I+G+++LNP ++ + SLDL V+ Sbjct: 129 DEGTNPDIVAINGVSAALAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLIVA 188 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT+DAVLM+E EA +LSE+ ++DAI FG +PV++AI +L K+ KE +VI+ + S Sbjct: 189 GTRDAVLMIESEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKLAGKEKLVIELAGGNS 248 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSVF 295 +++ ++ + D+R + I +K R +I+ + + F+ +++ ++ S Sbjct: 249 DVQDAVNAAFEADVRAAYAITDKSARAAKIEAFRAAAQAKFAGTEDAPGAYSSNDVSSAM 308 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++ KVVR ++ R+DGR + VR I QVG+L RTHGS+LF RG+TQA+V +TLG Sbjct: 309 KSLEKKVVRRSIIAGNPRIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLG 368 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +SL G + FM+HYNF P + GE R G P RREIGHGRLARR + VLP Sbjct: 369 TESDMQMTESLEGVAKQRFMLHYNFPPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPS 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F Y +R VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAG+AMGL+ + D + + Sbjct: 429 MEKFGYAIRSVSEITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAV 488 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+T +Q+D+KIGG++ IM AL QA GR+HIL+EM Sbjct: 489 LTDILGDEDHLGDMDFKVAGTREGVTTLQLDIKIGGLTREIMQEALAQAHAGRMHILDEM 548 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K + R + + PR+ M + D+IR VIG GGKVIRGIVE TGAKV+I+DDGT+KI Sbjct: 549 AKCMETPRGAIADHAPRMFTMKVKVDKIREVIGAGGKVIRGIVEATGAKVDIEDDGTIKI 608 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + EAA++MI I EV IY G+VVK+MDFGAFV G DGLVHISQ++ Sbjct: 609 FAVTGDAGEAAKKMIEDIVAEVEVGAIYTGKVVKLMDFGAFVRVVGGTDGLVHISQIANH 668 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 RV K +D +KEG V VK+L+ D +GKI+LSMK V+ Sbjct: 669 RVEKVADELKEGQEVRVKVLEVDRQGKIRLSMKDVE 704 >gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] Length = 716 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/693 (48%), Positives = 492/693 (70%), Gaps = 3/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ +++ L +ETG I RQ+DGAV+ +YG+TVVL T V +++ ++GQDFFPLT Sbjct: 9 MFNIVKKSVKFGDNTLTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLT 68 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA GKIPGG+ +RE RP+E E L R+IDR +RPLF K + NE Q++ VM Sbjct: 69 VDYQEKTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSS 128 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E + +++ ASAAL +SG+PF GPV ++V YI+ ++V+NP + S LDL V+ Sbjct: 129 DSEIDSDIPAIIGASAALAISGIPFYGPVGASRVGYIDEKFVINPTKTQLVDSELDLVVA 188 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G+ AVLMVE EA +L E V+LDA++ GH +PVI+ I++ AK AK+P +++ +K Sbjct: 189 GSDAAVLMVESEAKELPEKVMLDAVLAGHKAMQPVIKMINEFAKEAAKDPWDWTAQETNK 248 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297 L ++ ++ +DL + I K R +++ ++K K+++ ++E+++ NE I + F + Sbjct: 249 DLVSKIEKIAAKDLEKAFAIKAKGERSEKLSEIKDKVLAEVANENTTPNEMNAIKNEFFN 308 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +++K+VR +LD R+DGRD+ TVR I + G+L R HGS+LF RG+TQAIVV TLGT Sbjct: 309 LESKIVRNKILDGDPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTG 368 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +D+L G ++ FM+HYNF P ATGE R+G P RREIGHG+LA+R + LP Sbjct: 369 RDEQIIDALQGEFKDRFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRGLSAALPSKE 428 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F YT+R+VSEITES+GSSSMA++CG ++A+MDAGVP++ VAGIAMGL+K+ + +L+ Sbjct: 429 DFDYTIRLVSEITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAVLT 488 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+ IM +AL QA+ G HIL M K Sbjct: 489 DILGDEDHLGDMDFKVAGTDNGITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKK 548 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L R ++ +F P++ + I PD+IR+VIG GG VI+G+ +TGA ++IDDDG VK+A Sbjct: 549 TLKAPRTEMSQFAPQILTIKIHPDKIRDVIGKGGAVIKGLAAETGATIDIDDDGLVKVAC 608 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ +AA + I+ IT EV+++Y G+V+K++DFGA V +DGL+HISQ++ ER+ Sbjct: 609 TNGESGQAAIDRIKEITADVEVDQVYDGKVIKILDFGAIVSLLPGKDGLLHISQIAHERI 668 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D + EGD V VK+++ DD+G++++S K + Sbjct: 669 KAVKDHLSEGDEVKVKVIEVDDKGRVRVSAKAL 701 >gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3] gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3] Length = 700 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/697 (49%), Positives = 482/697 (69%), Gaps = 12/697 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV ++ + +DFFPLTVNYQE+TY Sbjct: 8 FQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E LISR+IDR +RPLF +KNE QVI V+ + E +P + Sbjct: 68 AAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V+M+A SAAL +SG+PF GP+ A+V YI+GQY+LNP E + S L+L VSGT++AVLM Sbjct: 128 VAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSGTENAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241 VE EA LSEDV+L A+++GH + + V+ AI++ A A+ P+ D+ D + + Sbjct: 188 VESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDALD-ALIA 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E I+E ++S +K R + + ++ + + +I D++ Sbjct: 247 TEAQSRIEEAYQIS----DKGDRYDALKIITSEVKEKLLAADETLEAKQIGEYLHDLEKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT ++ + R+DGRD E+VR + + G+L RTHGS+LF RG+TQA+V TLGT+ D Q Sbjct: 303 VVRTRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G +++ F++HYNF P GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 363 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI G Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QAK RLHIL+ M + +SE Sbjct: 483 DEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEAISE 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + IP D+IR+VIG GG IR + E+TG + I+DDGTVKIA++S Sbjct: 543 GRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAATSAE 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + E A I+++T EV IY G+VV++ DFGAFV+ +DGLVHISQ+ ERV K S Sbjct: 603 QAEDAINRIKTLTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 D +KEG V VK+L+ D +G+++LS+K + P+ Sbjct: 663 DYLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKKDAPV 699 >gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp. MED92] gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp. MED92] Length = 701 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/698 (49%), Positives = 488/698 (69%), Gaps = 6/698 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V T ++ G+ + +ETGR+ARQ+ G+VL G VL TVV + K GQDFFPL+ Sbjct: 1 MFQVTTKTFQFGGQEVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YAVG+IPGG+ +RE+RP+E E L SR+IDR IRPLF K Y NE QV+ V+ Sbjct: 61 VHYQEKYYAVGRIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVVCTVVSA 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFV 178 D ++ P + +M+ SAAL +SG+PF+GP+ A+V + + Y+LNP ++ Q S LD+ V Sbjct: 121 DKKNDPDIAAMIGTSAALAISGIPFQGPIGAARVGFTEDAGYLLNPSFEQLQTSELDMVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KD 236 +GT DAVLMVE EA +LSED +L A++F H E + VI A+++LA KE V ++ KD Sbjct: 181 AGTADAVLMVESEAQELSEDEMLGAVLFAHQEMQVVINAVNELAAEAGKEAWVWEAPAKD 240 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVF 295 L ++ + E + + + +K R + +L+ K V + E + G++ + Sbjct: 241 -EALIAKVRAEVGEGITAAYQVADKMQRQNALAELRAKAVEALAGEEEGQPSAGDVSGIV 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++ ++VR +++ + R+DGRD++TVR I Q+ +LQ THGS+LF RG+TQAI TLG Sbjct: 300 SSLEKEIVRGRIVNGEPRIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D+Q +D++ G +++ FM+HYNF P + GE RMG RREIGHGRLARR + VLP Sbjct: 360 TARDQQIIDAIEGERKDPFMLHYNFPPYSVGECGRMGGAGRREIGHGRLARRGVAAVLPT 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+ PVAGIAMGLVK+GD F + Sbjct: 420 QEEFPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEGDKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM +AL+QA R+HIL EM Sbjct: 480 LTDILGDEDHLGDMDFKVAGTERGVTALQMDIKITGITEEIMDIALEQAYEARVHILKEM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + V+ +R +L + P + + I P++IR+VIG GG IR + E+TGA ++I+DDGTV++ Sbjct: 540 ATVIGYARPELPDNAPALTQLKINPEKIRDVIGKGGATIRALTEETGASIDIEDDGTVRV 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + A +AA + I IT E+ +IYKG+VV++ DFGAFV+ +DGLVHISQ++ + Sbjct: 600 YAEDKAAAKAATDKIIEITAEAEIGQIYKGKVVRIEDFGAFVNILPGKDGLVHISQIANK 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RV K +D ++ V VK+LD D RG+IKLSMK ++ + Sbjct: 660 RVEKVTDYIQMDQEVTVKVLDVDQRGRIKLSMKDIEAD 697 >gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC 11218] Length = 711 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/691 (49%), Positives = 481/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA LSE+ +L A++FGH++ + VI+AI++ A A + ++ Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ + +E+ N EI ++F D Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + +F PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + + A I IT EV KIY G+V ++ DFGAFV +DGLVHISQ++ +R+ Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SDV+ EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] Length = 704 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/692 (48%), Positives = 476/692 (68%), Gaps = 2/692 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ +W + LETG IARQ+ G+VL T +T+VLATVV R K GQ FFPLT Sbjct: 1 MFEIAKKTFQWGNHTVTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA G+IPGG+ +RE RPTE E L +R+IDR IRPLF + + NE QV++ V+ Sbjct: 61 VDYFEKFYAAGRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +M+ ASAAL +SG+PF GPV A+V YI+GQYVLNP + + LDL V+ Sbjct: 121 NPEIDADIPAMIGASAALAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238 GT AVLMVE EA++LSEDV+L A++FGH + + VI+AI +L + K E + + Sbjct: 181 GTDQAVLMVESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVEAGGKAEWEWTAPEKNT 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L E + + + +R + + K R ++I ++ + + ++E + E+ + ++ Sbjct: 241 ALIERVHGLAGDAMRDAYKLRVKQERSQRIKQIEADVQAQLAAEENPPAATEVGDILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q+ +VR +L + R+DGRD+ TVR IS + G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 301 QSSIVRNQILSGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTAR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+++G R FMM YN P ATGE R+G P RRE+GHGRLA+RAI ++P Sbjct: 361 DEQIIDAITGEYRERFMMQYNMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQED 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ + VAGIAMGL+K+G+ F +L+D Sbjct: 421 FAYSIRLVSEITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+ IM +AL QA+ R+HIL +M + Sbjct: 481 ILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L +F PR+ M I P++IR+VIG GG IR I E+TG ++I DDG++ IA+ Sbjct: 541 IPAARTELSDFAPRMYQMKINPERIRDVIGKGGATIRAITEETGTTIDIQDDGSITIAAV 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A++ I +T E+ KIY G V+K+++FGA V RDGL+H+SQ++ ERV Sbjct: 601 DAEAARRAQQRIADLTAEVEIGKIYNGTVLKILEFGAIVQVLPGRDGLLHVSQIAQERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K D VKEG +V VK+++ DD+G+++LSMK V Sbjct: 661 KVEDYVKEGQSVRVKVIEADDKGRLRLSMKAV 692 >gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia succiniciproducens MBEL55E] gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E] Length = 704 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/690 (49%), Positives = 479/690 (69%), Gaps = 16/690 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V +VV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--------EPIVIDSKDFS 238 MVE EA+ L+E+ +L A++FGH + + V+EAI + K EP DS S Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEP---DSALIS 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 K++ + + R++ EK VR +QID +K +++ ++E +EG+IV +F + Sbjct: 244 KVKAIAENRLGDAYRIT----EKQVRYEQIDAIKADVIAQITAEDEEVSEGKIVDIFTAL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++++VR ++ + R+DGR +TVR + G+L RTHGS++F RG+TQ++ VVTLGT Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTER 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L+G +++ F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P ++ Sbjct: 360 DAQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+ D F++LSD Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKFVVLSD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + Sbjct: 480 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S R ++ EF PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ Sbjct: 540 ISAPRAEISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++ I IT E +Y G+V ++ DFGAFV G ++GLVHISQ++ ERV Sbjct: 600 DGNAVKTVMARIEDITAEVEAGAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD ++ G V VK+++ D +G+I+L+M+ Sbjct: 660 KVSDYLQVGQEVQVKVVEIDRQGRIRLTMR 689 >gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus LGP32] gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32] Length = 706 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/694 (49%), Positives = 488/694 (70%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + +P +++M+A SAAL +SG PF GP+ A+V +I+G+ VLNP E + S LDL V Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A A ++ Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++++ + L + I EK R +Q+ +K V ++ + +E EI + Sbjct: 241 TELKAQVAELAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +DSL G ++++F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY+G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691 >gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Lens] gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Lens] Length = 729 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/695 (47%), Positives = 480/695 (69%), Gaps = 2/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV+A+ T VL TVV+ + + DFFPLTVNYQE Sbjct: 5 TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF + NE Q+I V+ + E S Sbjct: 65 KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +++M+ ASAAL +SG+PF GP+ A+V Y +G Y+LNP R ++++ LDL ++GT+DA Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 +LMVE EA +LSED++ A+++GH K VI++I +LA+ K + + + L+ Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ + + ++ + I +K R +++ +L+++ +S +E+ N I ++F +++ +V Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERSIV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD TVR IS + L+RTHGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D +SG R+ FM+HYNF P + GE ++G+P RREIGHGRLA+RA+ VLP +FPY L Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL+QA GR HIL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G++E TG ++IDD G +++ S + Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKIAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+++ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ R K +V Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAARTQKVEEV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ++EG + V + D +G++KL K Q K + Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699 >gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC 51908] gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC 51908] Length = 702 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/685 (51%), Positives = 478/685 (69%), Gaps = 10/685 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ++ AVLA+ G+T VL TVV ++ G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+ENE LI+R+IDR IRPLF +KNE QVII V+ D E +P V+ Sbjct: 69 AGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +S LPF GP+ A+V Y NG+YVLNP + + + LDL V+GTQ AVLMV Sbjct: 129 SMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAGTQGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQ 246 E EA L E+V+L +++GH++ + VI AI++L K ++D + L E++ Sbjct: 189 ESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAED-TDLVEKIKG 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + +L + I +K+ R + LK V+ E++ + E+ + ++ KVVR+ Sbjct: 248 LAEAELTNAYQIADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLEKKVVRSR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ R+DGR+ + VR ++ G+L RTHGSSLF RG+TQA+V TLGT D Q VDS+ Sbjct: 308 IISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSI 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY++R+V Sbjct: 368 MGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + +S R + Sbjct: 488 GDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAISGHREDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + PR+ + I P++IR+VIG GG IR + E+TG + ++DDGTVKIAS A EA Sbjct: 548 SDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS---ANGEAT 604 Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR I ++ EV +Y G+VV+++DFGAFV +DGLVHISQ++ ERVA SD Sbjct: 605 KEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+++ D +G+++LSMK Sbjct: 665 LQVGQEVKVKVMEVDRQGRVRLSMK 689 >gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus 129PT] gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus 2336] gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT] gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336] Length = 713 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/691 (49%), Positives = 479/691 (69%), Gaps = 2/691 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP ++E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 MVE EA+ L+E+ +L A++FGH + + VIEAI + A K + + + + E + Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTILIEKVK 246 Query: 247 MIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 I E+ + I EK R +QID +K +++ ++E + +EG+I+ +F +++++VR Sbjct: 247 SIAENRLGDAYRITEKQARYEQIDLIKADVITQVTAEDETISEGKIIDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RILRGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPY +R+ Sbjct: 367 LTGEKTDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG +R + E+TG ++IDDDGTVKIA+ ++ Sbjct: 547 ISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGTSIDIDDDGTVKIAAVDKNAVQE 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I IT EV +YKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD + Sbjct: 607 VMSRIEDITAEVEVGVVYKGKVTRLADFGAFVALVGNKEGLVHISQIAEERVEKVSDYLA 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L+ D +G+I+L+MK + ++ K Sbjct: 667 IGQEVIVKVLEIDRQGRIRLTMKELAKDQTK 697 >gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 706 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/683 (49%), Positives = 475/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV +S K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V Y+N QYVLNP +DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA LSED +L A++FGH + + VI+ I+ L K + + + LE+ + Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWDWHAPEVNVSLEQRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + N G+I + +++ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690 >gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] Length = 721 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/685 (49%), Positives = 475/685 (69%), Gaps = 2/685 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI + L LETG +ARQ+DGAV A+ T VLATVV + + FFPLTVNYQE Sbjct: 5 TKEIAFGDHTLILETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVGKIPGG+ +RE RPTE E LISR+IDR IRPLF + + NE QVI V+ + E S Sbjct: 65 KFYAVGKIPGGFNKREGRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPEVS 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P +V+M+A+SAAL LSG+PF GP+ A+V Y +G Y+LNP R + + LDL V+GT++A Sbjct: 125 PDIVAMIASSAALALSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLVVAGTKNA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243 +LMVE EA +LSED++ AI+FGH K VI+AI +LA K ++ L+ Sbjct: 185 ILMVESEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAAQAGKTRWDWSPREVDVNLQSR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 +S MIK ++ + I +K R +++ +LK + ++ +E+ N I ++F ++++ V Sbjct: 245 VSDMIKHEVEAAYLIKDKQERYQRLAELKDQTITALQAENEELNADVISNIFVELESATV 304 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +LD + R+DGRD +TVR IS + LL+R HGS LF RG+TQAIVV TLG D Q + Sbjct: 305 RNRILDGEPRIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQIL 364 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+++G ++ FM+HYNF P + GE +G+P RREIGHGRLA+RAI VLP++ FPY L Sbjct: 365 DNITGESKDRFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRAIMAVLPESNDFPYVL 424 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMATVCG+SLALMDAGVP+ PVAG+AMGL+K+GD + +L+DI GDE Sbjct: 425 RVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ GITA+QMD+KI GI+ IM AL QA GR++IL M+ L+E R Sbjct: 485 DHLGDMDFKVAGTEHGITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNALAEHR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ M + D+IR +IG GG I+G+++ TG ++IDD G V++ S L + Sbjct: 545 EELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIDSTGVSIDIDDTGVVQLFSPDLQAL 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++ I+S+ EV + Y+G+V K++DFGAF++ +DGL+HISQ+ +R K V Sbjct: 605 EEAQKQIKSLIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQKVDTV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++EG + V + D +G++KL K Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWK 689 >gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio parahaemolyticus 16] gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio parahaemolyticus 16] Length = 709 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/694 (49%), Positives = 486/694 (70%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R ++ EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREEISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1] gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter sp. ADP1] Length = 697 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q+ V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL ++G PF GP+ GA+V ING+YVLNP ++ Q LDL V+ Sbjct: 122 DKTMDADIAAMLGASAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + ++AI + A A E + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPTKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 242 TLLEQLKAAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARAEISAHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ERV Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A SDV+KEG V V++ D D+RG+IKLSMK ++Q Sbjct: 662 ANVSDVLKEGQDVKVQVADVDNRGRIKLSMKDIEQ 696 >gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 706 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV ++ K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V Y+N QYVLNP +DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH + + VI+ I+ L K + + + LE+ + Sbjct: 188 MVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNVSLEQRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + N G+I + +++ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690 >gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] Length = 702 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/693 (50%), Positives = 482/693 (69%), Gaps = 5/693 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T E+ + + LETGRIARQ+ GAVL T G+ VLATVV ++ K GQDFFPL+V+Y Sbjct: 3 ITTKTFEFGNQTVTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QERTYAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+ VM + + Sbjct: 63 QERTYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTD 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181 + +M+A SAAL +SG+PF GP+ A+V + + + Y+LNP E GSL D+ V+GT Sbjct: 123 LDADIPAMLATSAALAISGIPFNGPIGAARVGFNDEEGYLLNPSNSELDGSLLDMVVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-- 239 +DAVLMVE EA +L+ED +L A+++ H E + I AI++ K P + + +K Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQTAITAINEFVSESGK-PRWEWTAEAAKEG 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L + + + + I EK R ++ ++++ V+ SE ++E ++ F ++ Sbjct: 242 LTDAVQLGFATQIEEAYGISEKMARYTKLGEIREAAVAALVSEEGEYDEADVTGAFAKLE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VR ++D + R+DGRD++TVR I+ +VGLL++THGSSLF RG+TQAI TLGT D Sbjct: 302 KNIVRRRVIDGQPRIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q D L+G ++ FM+HYNF P + GE RMG RREIGHGRLARR + VLP +F Sbjct: 362 AQISDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+ PVAGIAMGLVK+ D F +L+DI Sbjct: 422 PYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA R +IL EM+ V+ Sbjct: 482 LGDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALTQAMDARKYILREMATVI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 +R ++ P + + I P++IR+VIG GG IR I E+TGA +++DDDGTV+I ++ Sbjct: 542 GYARPEVSPNAPSMATVKIDPEKIRDVIGKGGATIRSITEETGASIDLDDDGTVRIYAAD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A +AA I IT E++K+Y+G+VV++ +FGAFV+ +DGLVHISQ++ ER+ Sbjct: 602 KASSDAALLKIHEITAEAEIDKLYQGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRA 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SDV+ EG V VK+LD D RG+IKLSMK V + Sbjct: 662 VSDVLAEGQDVIVKVLDVDARGRIKLSMKEVTE 694 >gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC1989] gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC1989] Length = 742 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/690 (50%), Positives = 472/690 (68%), Gaps = 11/690 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETGR+ARQ+ GAVL + G+T VL TVV + ++G+ FFPL+V+Y E Sbjct: 5 TKTFQFGNDTVTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF + NE QV+ V+ + + Sbjct: 65 KAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVD 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDE-DQGSLDLFVSGTQD 183 P + +M+ SAAL +SG+PF GP+ GA+V Y YVLNP + LD+ V+GT+D Sbjct: 125 PDIAAMIGTSAALSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESELDMVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDF-S 238 AVLMVE EA++L ED++L A++F H EC+ V++AI++LAK K + ++ + + Sbjct: 185 AVLMVESEASELPEDIMLGAVLFAHQECQAVVQAITELAKDAGKPRWEWSVAEENAELKA 244 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + E+ I + R + +K R ++ + + V+ +E + + S F + Sbjct: 245 AVAEQFGAAIADAYRTT----DKMERYGKLTASRDEAVAALVNEEAGVTADAVKSAFSKL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + VR ++ + R+DGRD+ TVR I +VG+L + HGSSLF RG+TQAIVV TLG Sbjct: 301 EKQTVRKSVVAGEPRIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNAR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L G +R+ FM+HYNF + GE RMG+ SRREIGHGRLARR + VLP Sbjct: 361 DSQIIDALEGERRDPFMLHYNFPSYSVGECGRMGSTSRREIGHGRLARRGVAAVLPTQED 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSEITES+GSSSMA+VCG+SLA+MDAGVP+ PVAGIAMGLVK+ F +L+D Sbjct: 421 FPYTIRIVSEITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKEESGFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL QA + RLHIL EM+KV Sbjct: 481 ILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALGQALQARLHILAEMNKV 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S SR ++ E PR E + + PD+IR++IG GG IR I E+TGA V+IDD G VK+ ++ Sbjct: 541 ISTSRTEVSENAPRFETIKVDPDKIRDIIGKGGATIRSITEETGASVDIDDTGLVKVYAA 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++AA I IT E+ IY+G V +++DFGAFV F +DGLVHISQ++ ERV Sbjct: 601 DNEALQAAMNKIGEITAEAEIGAIYEGVVARIVDFGAFVTFLPGKDGLVHISQIAEERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD +KEG TV VK LD D RG+IKLS+K Sbjct: 661 AVSDYLKEGQTVKVKCLDVDQRGRIKLSIK 690 >gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira defluvii] gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira defluvii] Length = 705 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/686 (51%), Positives = 480/686 (69%), Gaps = 3/686 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V+IE AGR L LETGRIA+Q+DGA+ ATYG+TVVLAT V ++ K G DF PLTV+YQ Sbjct: 3 HVVDIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+TYA GKIPGGY +RE RP+E E+L SR+IDR +RPLF + Y ETQVI +V+ D Sbjct: 63 EKTYAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADKTG 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 V+ ++AASAAL +S +PF GP+ G ++ +NGQ+V+NP L+ + S L L V+GT D Sbjct: 123 VSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGTAD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEE 242 AV+MVE AN+L E +L+AI H+E K ++ I +L K+ K + +V+ + L E Sbjct: 183 AVMMVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAALTE 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ +R + IP K R +++D + + V+ S+ + + + +F ++ Sbjct: 243 QVRALVAGPIREAILIPNKSARQERLDQVLAETVAKLKSDEPNRDR-HVKIIFHGLEYTE 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L+K+VR DGR +R I+ +VG+L R HGS++F RG+TQ++ VVTLGT +DEQ Sbjct: 302 VRNMILEKRVRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQR 361 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G FM+HYNF P + GE + +P RRE+GHG LA RA+ ++P +FPYT Sbjct: 362 IDALEGEYMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPYT 421 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSEI ES+GSSSMATVCG +LAL+DAGVPI +PVAGIAMGL+K+GD ++LSDI G Sbjct: 422 VRIVSEILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSDILGL 481 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT +G+TA+QMD+KIGGI+ +M AL QAK GRLHIL M++ L+E Sbjct: 482 EDHLGDMDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQALTEP 541 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L F PR+ M I D+IR+VIG GGK+IR I+ +TG K+N++D G V IASS A Sbjct: 542 RTKLSAFAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVKINVEDTGDVTIASSDEAS 601 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +MI+ +T+ EV KIY G V K+MDFGAFV DGLVHISQL+ RV +D Sbjct: 602 AQKAIDMIKRLTEEVEVGKIYLGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAVTD 661 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 V EGD V VK+L+ D +GKI+LS K Sbjct: 662 EVSEGDQVMVKVLEIDKQGKIRLSRK 687 >gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus succinogenes 130Z] gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus succinogenes 130Z] Length = 707 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/684 (49%), Positives = 480/684 (70%), Gaps = 4/684 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V +VV + +K+GQDFFPLTV+YQER+ Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQERS 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM 244 MVE EA+ L+E+ +L A++FGH + + VIEAI +L K K V D + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPD-TALINQV 245 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + L + I EK VR +QID +K +++ ++E+ +EG+IV +F +++++VR Sbjct: 246 KVIAESRLGDAYRITEKQVRYEQIDAIKADVIAQITAENEEVSEGKIVDIFTALESQIVR 305 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ VVTLGT D Q +D Sbjct: 306 GRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILD 365 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L+G +++ F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P ++FPY +R Sbjct: 366 ELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYVVR 425 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+ D F++LSDI GDED Sbjct: 426 VVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKFVVLSDILGDED 485 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + ++ R Sbjct: 486 HLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIAAPRA 545 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ E+ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ ++ Sbjct: 546 EISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGTSIDIDDDGTVKIAAIDGNAVK 605 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 I IT E +Y G+V ++ DFGAFV G ++GLVHISQ++ ERV K SD + Sbjct: 606 EVMARIEEITAEVEAGAVYTGKVTRLADFGAFVAILGNKEGLVHISQIAEERVEKVSDYL 665 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 + G V VK+++ D +G+I+L+MK Sbjct: 666 QVGQDVQVKVVEIDRQGRIRLTMK 689 >gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] Length = 711 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/708 (49%), Positives = 495/708 (69%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP RL + +LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A++FGH + + I+AI +L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAAK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E +S++ + DL + I +K R ++ ++ K ++ ++ ++ + Sbjct: 241 NEALITRVSELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTAAADKASV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS++ + A+ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + D G+P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708 >gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114] gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114] Length = 709 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/684 (49%), Positives = 479/684 (70%), Gaps = 8/684 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 ++ + LETG IARQ+ AV+A+ +T V +VV + GQDFFPLTVNYQERTYA Sbjct: 11 QYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYA 70 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + E +P ++ Sbjct: 71 AGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ SAAL ++G+PF GP+ A+V +ING+ VLNP E + S LDL VSGT+ AVLMV Sbjct: 131 TMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVVSGTEGAVLMV 190 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247 E EA+ L+E+ +L A++FGH + + VI AI++ A A + ++ + L ++++ Sbjct: 191 ESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEENTVLNARIAEL 250 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + L + I EK R +I ++ ++ SE+ N E+ ++F D++ VVR + Sbjct: 251 AEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHDLEKTVVRRSI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +DSL Sbjct: 311 IAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLM 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+VS Sbjct: 371 GEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIEEFPYTVRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+ R HIL M + +S +R ++ Sbjct: 491 DMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEAISGAREEIS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA++ A AA+ Sbjct: 551 EFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAATEGA---AAK 607 Query: 608 EMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 E IR I ++ EV KIY G+V++++DFGAFV G ++GLVHISQ++ ER+ K +D + Sbjct: 608 EAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERIEKVADHL 667 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 + G V K+L+ D +G+I+LS+K Sbjct: 668 QVGQEVKTKVLEIDRQGRIRLSIK 691 >gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp. MED222] gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp. MED222] Length = 706 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/694 (49%), Positives = 487/694 (70%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + +P +++M+A SAAL +SG PF GP+ A+V +I+G+ VLNP E + S LDL V Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A A ++ Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ ++++ + L + I EK R +Q+ +K V ++ + +E EI + Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +DSL G ++++F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY+G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691 >gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383] gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383] Length = 715 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/699 (49%), Positives = 489/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSEDV+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEW--DWQPAPK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++ + DL + + +K R ++ ++ + + S+ ++ + Sbjct: 241 NEPLIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDASAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTNSDGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11] gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11] Length = 709 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/684 (49%), Positives = 480/684 (70%), Gaps = 8/684 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 ++ + LETG IARQ+ AV+A+ +T V +VV + GQDFFPLTVNYQERTYA Sbjct: 11 QYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYA 70 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + E +P ++ Sbjct: 71 AGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ SAAL ++G+PF GP+ A+V +ING+ VLNP E + S LDL VSGT+ AVLMV Sbjct: 131 TMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVVSGTEGAVLMV 190 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247 E EA+ L+E+ +L A++FGH++ + VI+AI++ A A + ++ + L ++++ Sbjct: 191 ESEADNLTEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPAWDWVAPEENTVLNSRIAEL 250 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + L + I EK R +I ++ ++ SE+ N E+ ++F D++ VVR + Sbjct: 251 AEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHDLEKTVVRRSI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ D Q +DSL Sbjct: 311 IAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLM 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+VS Sbjct: 371 GEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIEEFPYTVRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+ R HIL M + +S +R + Sbjct: 491 DMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEAISGAREDIS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA++ A AA+ Sbjct: 551 EFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAATEGA---AAK 607 Query: 608 EMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 E IR I ++ EV KIY G+V++++DFGAFV G ++GLVHISQ++ ER+ K +D + Sbjct: 608 EAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERIEKVADHL 667 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 + G V K+L+ D +G+I+LS+K Sbjct: 668 QVGQEVKTKVLEIDRQGRIRLSIK 691 >gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01] gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01] Length = 706 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/691 (49%), Positives = 483/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + +P +++M+A SAAL +SG PF GP+ A+V +I+G+ VLNP E + S LDL V Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A A ++ Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ ++++ + L + I EK R +Q+ +K V ++ + +E EI + Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKSDTVEALIAQDENLDEREIRGMLGS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +DSL G ++++F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A + A I IT EV +IY+G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TEGAAAQEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691 >gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium atrosepticum SCRI1043] gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 706 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/689 (49%), Positives = 473/689 (68%), Gaps = 2/689 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV ++ K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V Y+N QYVLNP DE + LDL V+GTQ AVL Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVAGTQGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA LSED +L A++FGH + + VIE I+ L K + + LE+ + Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNVSLEQRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q++ +K +V+ +E + N GEI + +I+ VVR Sbjct: 248 ALSEARLGDAYRITEKQERYAQVNVIKTDVVAALQAEDETLNAGEIQEILGNIEKNVVRG 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTV+IAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVRIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 G V VK+L+ D +G+++LS+K + T Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIKEANPQT 696 >gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591] gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591] Length = 706 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/692 (49%), Positives = 478/692 (69%), Gaps = 5/692 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I L K + D + +L + Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWSWQAPDVNVELHNRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + +E E+ + I+ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKADVVAALLAEDETLDENELRDILGSIEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 G V VK+L+ D +G+++LS+K + T +P Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK---EATAQP 696 >gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] Length = 711 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/708 (49%), Positives = 492/708 (69%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKIVKEFKWGQHTVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R + +LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A++FGH + + I+AI +L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAAK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E + ++ + DL + I +K R ++ ++ K ++ + ++ + Sbjct: 241 NEALIARVGELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTVAADKASV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS++ + A+ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + D G+P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708 >gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 708 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/688 (50%), Positives = 475/688 (69%), Gaps = 9/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E + + LETG IARQ+DGAVLA+ G+T VL TVV R + GQDFFPLTVNYQER Sbjct: 7 EFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF + NE QVI V+ + E P Sbjct: 67 YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ SAAL +SG+PF GP+ ++V YING+YVLNP L E ++ LDL V+GT AVL Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243 MVE EAN L+EDV+L A+++GH + + +I AI + K A +P K+ + LE++ Sbjct: 187 MVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEF-KAQAGKPTWDWTAPEKNVA-LEDK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300 ++ + E + + I +K R + + + K ++V+ ++E + S ++ EI +F ++ Sbjct: 245 VATIAAEKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFGSLEK 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR + + R+DGR+ + +R + G+L RTHGS++F RG+TQA+V TLGT D Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+GT +N FM++YNF P GE +G+P RREIGHG LA+R I V+P +FP Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTLTEFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI VAGIAMGLVK+ D F++LSDI Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK RLHIL M + +S Sbjct: 485 GDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAIS 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +L F PR+ M IP +I VIG GG IR + E+TG + I DDGT+KIA++ Sbjct: 545 APSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I +T EV IY+G+VV+++DFGAFV+ +DGLVHISQ+STERV Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + EG V VK+L+ D +G+++LS+K Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692 >gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis HI4320] gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC 29906] gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis HI4320] gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC 29906] Length = 709 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/690 (50%), Positives = 485/690 (70%), Gaps = 2/690 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + ++ + LETG +ARQ+ AV+ T V TVV + +K+GQDFFPLT Sbjct: 1 MLNPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE QV+ V+ Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +V+M+ ASAAL LSG+PF GP+ GA+V +I+GQYVLNP +DE + S LDL V+ Sbjct: 121 NPQVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L KE + ++ Sbjct: 181 GTAGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQ 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L + ++Q+ + + + I EK R +QID ++ +++S +E S +EGEI+ +F + Sbjct: 241 SLHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTLLAEDESLDEGEIIEIFSGL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K+VR +L + R+DGR+ + VR + + GLL RTHGS+LF RG+TQA+V TLGT Sbjct: 301 EKKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTAR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D + G + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P + Sbjct: 361 DAQTIDDIMGEHTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+G++F++LSD Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLSD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+ +G++A+QMD+KI GI+ IM +AL QAK RLHIL M Sbjct: 481 ILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S+ R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 541 ISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV Sbjct: 601 SGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + G V VK+L+ D +G+I+LSMK Sbjct: 661 KVSDYLTMGQEVPVKVLEIDRQGRIRLSMK 690 >gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis ATCC 19624] gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis ATCC 19624] Length = 717 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/701 (48%), Positives = 484/701 (69%), Gaps = 6/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQS GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKITKTFQWGQHTVTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+ + Sbjct: 63 VDYLEKSYAAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V YING+YVLNP + + S +DL V+ Sbjct: 123 NPEVDADIPAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L A++FGH++ K I AI L + K D K +K Sbjct: 183 GTETAVLMVESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDAGKP--AWDWKAPAK 240 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++++ +E LR + I K R + + + + + + +++ ++ + Sbjct: 241 DEALIAKVVALGEEKLRAAYQIRNKQSRTQACREAYAAVKAGLAEQGVEFDDVKVEGLLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A+ VR +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 DIEARTVRGQILAGEPRIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L+LM+AGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDNKFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + E++ ++ +F PR+ M I P++IR+VIG GG IR + E+TG +++I +DGT+ IA Sbjct: 541 AAVGEAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIAEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A+ E A+ I IT E+ K+Y+G + K++DFGA V+ +DGL+HISQ++ ER Sbjct: 601 STESAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V K +D + EG V VK+L+ D++G++KLSMK + + +P Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLERPEQP 701 >gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] Length = 716 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/708 (48%), Positives = 490/708 (69%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R + +LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L ++FGH + + I+AI L + K D K +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWKPAAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++ + DL + + +K R ++ ++ + + ++ ++ + Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + L ++ PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + D G P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708 >gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis UMN179] gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis UMN179] Length = 718 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/690 (49%), Positives = 480/690 (69%), Gaps = 13/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQER+ Sbjct: 7 QFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQERS 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+ L+E+ +L A++FGH + + VIEAI + A K + + ++++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALINRIK 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298 E + E R++ EK R +QID +K + + +E+S S EG+I+ + ++ Sbjct: 247 ELSEARLGEAYRIT----EKQARYEQIDVIKADVCATVLAENSEDESITEGKIIDIIHEL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +++VVR+ +L + R+DGR +TVR + G+L RTHGS++F RG+TQ++ V TLGT Sbjct: 303 ESRVVRSRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTER 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P + Sbjct: 363 DAQIIDELTGERTDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTLEE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI VAGIAMGLVK+ D F++LSD Sbjct: 423 FPYVVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK R+HILN M + Sbjct: 483 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + R + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ Sbjct: 543 IQTPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAAT 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +A I I EVNKIY+G+V +++DFGAFV G ++GLVHISQ+S ERV Sbjct: 603 DNNAAKAVMSRIEDIVAEVEVNKIYQGKVTRIVDFGAFVVVLGNKEGLVHISQISDERVE 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD ++ G V VK+++ D +G+I+L+MK Sbjct: 663 KVSDYLQVGQEVMVKVVEIDRQGRIRLTMK 692 >gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans LB400] gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia xenovorans LB400] Length = 716 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/708 (48%), Positives = 489/708 (69%), Gaps = 13/708 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV R+ K GQDFFPLT Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R + +LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L ++FGH + + I+AI L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++ + DL + + +K R ++ ++ + + ++ ++ + Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+ IM +AL QAK GRLHI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + L ++ PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 ++ ER+ +D +K+G V VK++ D++G+++LS K + D G P Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708 >gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586] gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586] Length = 706 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/692 (49%), Positives = 478/692 (69%), Gaps = 5/692 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I L K + D + +L + Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPDVNVELHNRVQ 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + +E E+ + I+ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKADVVTALLAEDETLDENELRDILGSIEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G+++++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENYVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 G V VK+L+ D +G+I+LS+K + T +P Sbjct: 668 MGQEVPVKVLEVDRQGRIRLSIK---EATAQP 696 >gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi 35000HP] gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi 35000HP] Length = 712 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/692 (49%), Positives = 475/692 (68%), Gaps = 10/692 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V +VV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+ENE LI+R+IDR IRPLF + + NE Q++ V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+ LSE+ +L A++FGH + + VIE I + K K +P ++ ++++ Sbjct: 187 MVESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKEAGKPRWDWQPAEANTALINQVK 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ EK R +QID +K +++ +++ + +EG I+ + +++ Sbjct: 247 ALAETRIGDAYRIT----EKQARYEQIDAIKADVIAQLTAQDETISEGAIIDIITALESS 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L + R+DGR +TVR ++ G+L RTHGS++F RG+TQA+ V TLGT D Q Sbjct: 303 VVRGRILAGEPRIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI G Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDEKFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT GITA+QMD+KI GI+ IM +AL QAK R+HILN M + L Sbjct: 483 DEDHLGDMDFKVAGTRKGITALQMDIKIEGITPEIMHIALNQAKGARMHILNVMEQALPA 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R L +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ Sbjct: 543 PRADLSDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDNN 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + I I EVN IY G+V +V+DFGAFV G ++GLVHISQ++ RV + S Sbjct: 603 AAKMVMSRIEEIVAEVEVNAIYTGKVSRVVDFGAFVTILGGKEGLVHISQITDARVERVS 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D + G V VK+++ D + +I+L+MK +D N Sbjct: 663 DYLSVGQEVNVKVVEIDRQNRIRLTMKDLDNN 694 >gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] Length = 724 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/702 (50%), Positives = 483/702 (68%), Gaps = 17/702 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++ ++ ETG IARQ+ GAV+ +TVVLATVV + +K GQDFFPLT Sbjct: 3 MFNKVVKSFKYGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+ Sbjct: 63 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + SM+AASAAL +SG+PF GP+ A+V YIN +YVL P L + + S LDL V+ Sbjct: 123 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FG+ + + VIEAI +L + K P+ D++ Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGK-PLW----DWAP 237 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV-RCKQ---------IDDLKKKMVSYFS-SEHSSWNE 288 E + + V I E Y R KQ DD+ +K+ + E + E Sbjct: 238 AERNQQLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGE 297 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ ++ +++A VR +L + R+DGRD+ TVR I + G+L R HGS+LF RG+TQA Sbjct: 298 NEVANILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQA 357 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT++DEQ VD L+G QR FM+HYN P ATGE R+G+P RREIGHGRLA+RA Sbjct: 358 LVVTTLGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + VLP F YT+R+VSEI ES+GSSSMA+VCG L+L+DAGVP+ VAG+AMGL+K Sbjct: 418 LTAVLPNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIK 477 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+ F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR Sbjct: 478 EGNKFAVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGR 537 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL +M + + + +L + PR+ I PD+IR+VIG GG VIR + E+TG ++NI+ Sbjct: 538 MHILGKMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIE 597 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV IAS A AR + + EV K+Y+G+V +++DFGA V RDGL+H Sbjct: 598 DDGTVTIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLH 657 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ISQ++ ERV + SD +KEG V VK+L+ DD+ +I+LSMK + Sbjct: 658 ISQIAHERVNQVSDYLKEGQIVRVKVLEIDDKDRIRLSMKAL 699 >gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM 16069] gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM 16069] Length = 706 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/700 (49%), Positives = 479/700 (68%), Gaps = 33/700 (4%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E+ GR + +ETGR+ARQ+ GAV+ T V + +++GQDFFPLTVNY E+TY Sbjct: 8 FEYGGRTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+L+RE+RP++ E LI+R+IDR +RPLF + NE QV+I ++ + + V Sbjct: 68 AAGKIPGGFLKREARPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPTEV 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ ASAAL +SG+PF GPV AQV Y++G+YVLNP + + + LDL V+GT+ AVLM Sbjct: 128 VAMLGASAALEISGIPFSGPVGAAQVGYLDGEYVLNPSVTQLKESKLDLMVAGTESAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----------PI--VIDS 234 VE EAN+L E+V+L A++FGH E + I+AI +LA AK P+ + S Sbjct: 188 VESEANELPENVMLGAVMFGHQESQVAIKAIKELAAEAAKPKWDWTAPEKNVPLYDAVKS 247 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVS 293 F+ +E+ I +K R +I++L+ V + E + ++ Sbjct: 248 HSFAAIEDAYQ------------IADKAERYTKINELQSVAVEALAGDEEGQPSADDVKD 295 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +F I+ +VVRT ++ K R+DGRD + VR + + G+ RTHGS++F RG+TQA+V T Sbjct: 296 MFHSIEKEVVRTRIISGKPRIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFAT 355 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q DS+ G ++ FM+HYNF P GE MG+P RREIGHGRLA+R + ++ Sbjct: 356 LGTERDAQIKDSIMGEAKDHFMLHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVAAMV 415 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P A+FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+ D+F Sbjct: 416 PGIAEFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEADNF 475 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM AL QAK GRLHIL+ Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIEGITQEIMEQALHQAKGGRLHILS 535 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M++ L + R + E+ PR+ ++ IP D+I VIG GG IR + E+TGA + I+DDGTV Sbjct: 536 VMNQALEKPRDDISEYAPRITVIKIPVDKISEVIGKGGSTIRALTEETGATIEINDDGTV 595 Query: 594 KIASSSLAEIEAAREMIRSIT--DVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 K+ASS + E A E +R I +P E ++G+VV++ DFGAFV RDGLVHIS Sbjct: 596 KVASS---DAEGAAEAVRRIKLMTMPIEAGMEFEGKVVRLADFGAFVEITPGRDGLVHIS 652 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 Q++ ERV K +D +KEGD V VK+L+ D + +I+LSMK + Sbjct: 653 QIAHERVNKVTDYLKEGDVVKVKVLEVDRQNRIRLSMKAM 692 >gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 699 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/687 (48%), Positives = 474/687 (68%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 VEIE+ G+PL +ETG++ARQ+DGA + TYGET +L TVV +++++GQDFFPLTVNYQ Sbjct: 4 QKVEIEFNGQPLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPG + RRE TE E LI R+IDR +RPLF K Y ETQ+I V+ D + Sbjct: 64 EKFYASGKIPGSFFRRERGATERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCVN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +S++AASA++ +S +PF GP+ G +V ++G+++ NP L++ +Q +++ V+G++D Sbjct: 124 DPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDIEIVVAGSKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE EA+ +SED +L+A+ FGH +P+IE +KLA++ K ++ D + LE Sbjct: 184 AIMMVEGEADLISEDEMLEAVFFGHQAIQPLIEMQTKLAELVGVEKREFIVPETD-AALE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ + + + + I K R + +++ + + E ++ EI ++ I+ + Sbjct: 243 EKIVSLAQGRVEKAVTIRAKQERYAALKEIRADIQEQLAEEFEGRSD-EISAIMGSIEKR 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR + ++R+DGR +R IS +VG+L R HGS+LF RG+TQA+V TLGT DEQ Sbjct: 302 VVRQSVTKDQIRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D++ G + FM+HYNF P GE S P RREIGHG LA R+ ++P+ FPY Sbjct: 362 RMDNIQGMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVSEI ES+GSSSMA+VCG+S++LMDAGVP VAGIAMGL+K+GDD ILSDI G Sbjct: 422 TVRIVSEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSDILG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT G+ A+QMD+KI G++ +IM AL QAK GRLHIL EM+K +S Sbjct: 482 DEDHLGDMDFKVTGTKEGVAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMAKAISA 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + PR+ + + PDQ+R VIG GGK +RGI+E TG ++I+DDG + I+SS+ Sbjct: 542 PREDMSPYAPRITTVFVKPDQVRTVIGSGGKTVRGIIEATGCGIDIEDDGRINISSSNGD 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +AA +MI+ +T PEV K+Y G V K+MDFGAFV DGLVH+S+L+ ERV K + Sbjct: 602 AAKAAAQMIKELTQSPEVGKLYNGTVKKIMDFGAFVEIFSGTDGLVHVSELAKERVNKVT 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D++ EGD V VK + D +GKIKLS K Sbjct: 662 DILNEGDKVLVKCIGVDRQGKIKLSRK 688 >gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] Length = 715 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/699 (48%), Positives = 488/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF E +W ++LETG IARQ+ GAV+ +TV+LATVV ++ K GQDFFPLT Sbjct: 3 MFSKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + + + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R + +LDL V+ Sbjct: 123 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L ++FGH + + I+AI L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291 E ++++ + +L + I +K R ++ ++ + + + ++ ++ + Sbjct: 241 NEPLIARVTELAQAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEDAAASGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ ER+ +D +K+G V VK++ D++G+++LS K + Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01] gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01] Length = 710 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/694 (49%), Positives = 482/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E D LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELDTSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A++ + + Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 714 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 20 MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 78 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 79 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 138 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+YVLNP ++ Q LDL V+ Sbjct: 139 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 198 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A AKE + Sbjct: 199 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAKESDWVAPAKNE 258 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 259 ALLEQLKTAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 318 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 319 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 378 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 379 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 438 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 439 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 498 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 499 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 558 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 559 VISRARAEISANAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 618 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 619 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 678 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG + V++ D D+RG+IKL+MK ++Q Sbjct: 679 ANVTDVLKEGQELKVQVADVDNRGRIKLTMKDIEQ 713 >gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0010_16J05] Length = 718 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/690 (50%), Positives = 485/690 (70%), Gaps = 11/690 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + ++ + + +ET +IA+Q+ G+V+ T G+TVVL TVV +S + GQDFFPLTVNYQE Sbjct: 22 TKQFQFGDQQVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVNYQE 81 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE Q++ V+ D Sbjct: 82 KTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDKNQD 141 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +M+ SAAL +SG+PF+GP+ A+V Y++GQY+LNP D + S L++ V+GT A Sbjct: 142 PDIAAMIGTSAALAISGIPFDGPIGAARVGYVDGQYLLNPGYDVLETSELNMTVAGTASA 201 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSK 239 VLMVE EA +LSED +L A++F H E + +I A+++LA K +P D F++ Sbjct: 202 VLMVESEAKELSEDQMLGAVLFAHQEMQAIITAVAELAGEIGKPRWDWQPEAKDESLFAQ 261 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298 +E +K DL + I +K R +++ +L+ V+ + +E++S + ++ VF + Sbjct: 262 VE----GAVKSDLGDAYRISDKMERQERVRELRDSAVAQLTGAENASHSADDVAGVFSKV 317 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR +L+ + R+DGRD TVR I +VG+L + HGS+LF RG+TQA+VV TLGT Sbjct: 318 EKDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLR 377 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D +D+L G+ ++ FM+HYNF P + GE M P RREIGHG+LARR + LP + Sbjct: 378 DAALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSATLPNSED 437 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAG+AMGLVK+G+ + +L+D Sbjct: 438 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLVKEGNRYAVLTD 497 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM AL QA R+HIL EM+KV Sbjct: 498 ILGDEDHLGDMDFKVAGTATGVTALQMDIKIDGITEEIMEAALAQAFEARVHILGEMNKV 557 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S SR +L P + + + PD+IR++IG GG IR IVE+TGA+V+I+DDG+V+I + Sbjct: 558 ISASREELSANAPAMVTLNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAE 617 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A +AA I+ IT EV +IYKG+V +++DFGAFV+ +DGL+HISQ++ ERV Sbjct: 618 DGAAKDAAVNRIQEITAEAEVGRIYKGKVERIVDFGAFVNILPGKDGLLHISQIAEERVE 677 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + EG V V +LD D RG+IKLS+K Sbjct: 678 NVTDYLSEGQEVEVVVLDVDQRGRIKLSIK 707 >gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP 101886] gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP 101886] Length = 709 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/682 (49%), Positives = 477/682 (69%), Gaps = 2/682 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV + +GQDFFPLTVNYQERTY Sbjct: 8 FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ + +P + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVNPNVNPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ SAAL +SG+PF GP+ A+V YIN + VLNP E ++ LDL V+GT +AVLM Sbjct: 128 VAMIGTSAALSISGIPFNGPIGAARVGYINDELVLNPSNKELEESRLDLVVAGTDNAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE EA++LSE+ +L A++FGH++ + VI AI + A A + + ++L+ +++ Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVVINAIKEFAAEVATPAWEWSAPEVNTELKARVAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + L + I EK R ++ ++K +V + S + EI + ++ +VVR+ Sbjct: 248 LAEAQLTEAYQITEKMARYTRVGEIKSAVVEQLLEQDESLDAREIQGMLSSLEKQVVRSR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ D Q +D + Sbjct: 308 IIAGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDEI 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + ++F+ HYNF P GE +G+P RREIGHG+LA+R I V+P +FPYT+R+V Sbjct: 368 TGERTDNFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSQEEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCGSSLALMDAGVPI K VAGIAMGLVK+GDDF++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGTD G+TA+QMD+KI GI++ IM +AL QAK RLHILN M + +S +R + Sbjct: 488 GDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILNVMDQAISSARDDI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EF PR+ + I P++I++VIG GG VIR + E+T + I+DDGTVKIA++ + +AA Sbjct: 548 SEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETDTTIEIEDDGTVKIAATDGEKAKAA 607 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 I ++T EV +IY G+V +++DFG FV G ++GLVHISQ++ +R+ K SD V+ Sbjct: 608 IARIEALTAEVEVGRIYTGKVTRIVDFGCFVSVIGTKEGLVHISQVADKRIEKVSDYVEM 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+I+LSMK Sbjct: 668 GQEVQVKVLEIDRQGRIRLSMK 689 >gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 708 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A++ + ++ Sbjct: 181 AGTDSAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E+ N EI ++F D Sbjct: 241 TALVTKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNEALLAENPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I ++P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAIMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ +M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHMMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLSEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] Length = 722 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/701 (48%), Positives = 488/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 11 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 70 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 71 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 130 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N QYVLNP ++ + S LDL V+ Sbjct: 131 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRLDLVVA 190 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 191 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 250 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289 +++ E + + +L + I +K R ++ ++ + E + ++ Sbjct: 251 ALIARVTE----LAQPELLAAYQIRDKQARSTKLKEVYTATSAKLEEEALAAGTVAADKA 306 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 307 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 366 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 367 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 426 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 427 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 486 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 487 GNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 546 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M++ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 547 HILRKMTEAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 606 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 607 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 666 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 667 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 707 >gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] Length = 697 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+YVLNP ++ + LDL V+ Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+LSGT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY] gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding [Acidovorax ebreus TPSY] Length = 727 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/707 (47%), Positives = 486/707 (68%), Gaps = 14/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V Y+NG+YVLNP + S LDL V+ Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA QLSE+++L A++FGH + K I AI +L + K +P D Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ + + ++ LR + I K R + + + ++ E ++ ++ ++ Sbjct: 243 TFIAKV----TALAEDKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEAL 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TL Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 359 GTERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F Sbjct: 419 SKDEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL + Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + E++ ++ F P++ M I P++IR+VIG GG IR + ++TG ++NI++DGT+ Sbjct: 539 MQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IA++ A+ + A+ I IT EV K+Y+G V K++DFGA ++ +DGL+HISQ++ Sbjct: 599 IAATEAAKADEAKRRIEEITAEVEVGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 ERV K D ++EG V VK+L+ DD+G++KLSMK + ++G+P Sbjct: 659 ERVEKVGDYLQEGQVVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705 >gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira halophila SL1] gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila SL1] Length = 702 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/684 (50%), Positives = 477/684 (69%), Gaps = 11/684 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG +ARQ+DGAVL +TVVL TVV + +DF PLTVNYQERTYA G+IPG Sbjct: 22 VTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTVNYQERTYAAGRIPG 81 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+ +RE RP+E E L R+IDR IRPLF + ++ E QVI V+ + E + +M+ S Sbjct: 82 GFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDEVDADIPAMIGTS 141 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQ 194 AAL LSG+PFEGP+ +V +++G++VLNP + + LDL V+GTQDAVLMVE EAN Sbjct: 142 AALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLDLVVAGTQDAVLMVESEANL 201 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249 L E +LDA+++GH + + I+ I+ LA K +P +K+ S L+ ++++++ Sbjct: 202 LPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRWDWQP---PAKNES-LDSAVAELVR 257 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAKVVRTVML 308 DL + I +K R +++ L+ K V + E W G++ F+ ++ K+VR +L Sbjct: 258 SDLEAAYQIADKQERSERVGALRDKAVEALADEEREGWGAGDVGEAFKTLEKKIVRGRIL 317 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 R+DGRD++TVR ++ Q G+L RTHGS++F RG+TQAIVV TLGT D Q +D+L G Sbjct: 318 AGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEG 377 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 +R FM+HYNF P GE +G P RREIGHG+LA+R + V+P +FPY +R+VSE Sbjct: 378 ERREPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVMPSDEEFPYVIRVVSE 437 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 +TES+GSSSMATVCG+SL+LMDAGVP+ VAGIAMGL+K+GD+F +L+DI GDEDHLG Sbjct: 438 VTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAVLTDILGDEDHLGD 497 Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFKVAG+ G+TA+QMD+KI GI+ IM AL QA+ GRLHIL +M++V+ + R Q+ E Sbjct: 498 MDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQVIDKPREQMSE 557 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 + PR+ M I P++IR+VIG GG IRG+ E+TG ++I D+G V IAS+ A E A++ Sbjct: 558 YAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTNIDISDEGVVTIASADKAAAEEAKK 617 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 I +T EV K+Y G+V K+MDFGAFV+ RDGLVHISQ+S RV +D + EGD Sbjct: 618 RIELLTADVEVGKVYDGKVAKLMDFGAFVNILPGRDGLVHISQISNNRVENVADELSEGD 677 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQ 692 +V VK+L+ D +G+I+LSMK V++ Sbjct: 678 SVRVKVLEVDRQGRIRLSMKAVEE 701 >gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC BAA-1116] gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116] Length = 710 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/694 (49%), Positives = 483/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A++ + + Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638] gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638] Length = 711 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/693 (49%), Positives = 474/693 (68%), Gaps = 10/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VIE I L K K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEAGKPRWDWQPEAVNEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R QID +K + ++ +E S + E+ + I+ Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQIDVIKSETIATLVAEDESLDANELSEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 AVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPY Sbjct: 364 NIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696 >gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] Length = 775 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/696 (48%), Positives = 481/696 (69%), Gaps = 6/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG +ARQ++GAVL TV+LATVV +S K GQDFFPLT Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +M+ SAAL +SG+PF GP+ A+V YINGQYVLNP + +DL V+ Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ AVLMVE EA QLSE+++L ++FGH + I AI L + K V D + ++ Sbjct: 183 GTQAAVLMVESEAQQLSEEIMLGGVVFGHEQAGIAINAIHDLVRDAGKP--VWDWQAPAE 240 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++ + +E LR I K R + + + +++ ++ G++ + Sbjct: 241 DEAFVAKVKGLAEEKLRAVYQIRSKQARTQALREANATVMASLKESGEPFDAGKVNDLLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I++K+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 SIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ F PR+ + I P++IR+VIG GG VIRG+ E+TG +NID+DGT+ IA Sbjct: 541 EAMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ + E A++ I IT E+ K+Y+G V K++DFGA ++ +DGL+HISQ++ ER Sbjct: 601 STDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V K +D + EG V VK+L+ D++G++KLSMK + + Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTE 696 >gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 704 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/688 (50%), Positives = 474/688 (68%), Gaps = 12/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ T +T V TVV + K+GQ FFPLTVNYQERT Sbjct: 8 KFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKL 240 MVE EA LSED +L A++FGH + + VIE I LA K P V ++ L Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNEA-----L 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++ + + + + I EK R QID +K +++ +E S N GEI V ++ Sbjct: 243 HARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLGSLEK 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+G Q + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P+ +FP Sbjct: 363 QNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDEFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + ++ Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIN 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + EF PR+ + I P++I++VIG GG VIR + ++TG + I+DDGTVKIA++ Sbjct: 543 APRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATDN 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + + A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 603 EKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+++LS+K Sbjct: 663 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG 20546] gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG 20546] Length = 710 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/694 (49%), Positives = 481/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A A + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQTVISAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I + ++ +E N EI ++F D Sbjct: 241 TALTTKIAELAEAKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii Ech703] gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703] Length = 722 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/686 (50%), Positives = 476/686 (69%), Gaps = 8/686 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + +K GQDFFPLTVNYQERT Sbjct: 24 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKPGQDFFPLTVNYQERT 83 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF + NE QVI V+ + + SP Sbjct: 84 YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNPQISPD 143 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q LDL V+GT+ AVL Sbjct: 144 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTEGAVL 203 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ L+ED +L A++FGH + + VIE I L K + + +L+ + Sbjct: 204 MVESEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAEAGKSKWDWQPPEVNVELQNRVK 263 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + ++ EI + I+ VVR+ Sbjct: 264 VLSEARLGDAYRITEKQERYAQVDAIKSDVVTGLLAEDDTLDDNEIRDILGSIEKNVVRS 323 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 324 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 383 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPYT+R+ Sbjct: 384 LMGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 443 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD +++LSDI GDEDH Sbjct: 444 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSDILGDEDH 503 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R + Sbjct: 504 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGE 563 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIASS + + Sbjct: 564 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASS---DGDK 620 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ARE IR I ++ EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +R+ K +D Sbjct: 621 AREAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRIEKVAD 680 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+L+ D +G+++LS+K Sbjct: 681 YLQLGQEVPVKVLEVDRQGRVRLSIK 706 >gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] Length = 747 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/694 (48%), Positives = 482/694 (69%), Gaps = 6/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 IFNKITKSFQWGDKTVIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + N+ V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V YING+YVLNP + S +DL V+ Sbjct: 123 NPEVDADIAAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L A++FGH + I AI +L + K V D K +K Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREAGKP--VWDWKAPAK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++ + ++ LR + I K R + +++ ++ ++ + Sbjct: 241 DESLIAKVTALAEDKLRAAYQIRNKQARTHACREAYAVVMADLKEAGVEFDSVKVEGMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A++VR+ +L + R+DGRD+ TVR I + +L R HGSSLF RG+TQA+VV TLGT Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + FM+HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + E++ ++ F P++ M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA Sbjct: 541 DAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A+ + A+ I IT E+ K+Y+G V K++DFGA ++ +DGL+HISQ++ ER Sbjct: 601 ATDAAKADEAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K SD + EG V VK+++ D++G++KLSMK + Sbjct: 661 VEKVSDYLTEGQIVKVKVMETDEKGRVKLSMKAL 694 >gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 742 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/683 (49%), Positives = 474/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V VV + +K+GQDFFPLTVNYQERT Sbjct: 40 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNYQERT 99 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 100 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 159 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP ++E Q LDL V+GT AVL Sbjct: 160 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAVL 219 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A+++GH + + VIEAI +L K + + + L ++ Sbjct: 220 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTDLINKVK 279 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +V+ ++E +EG+I+ +F +++++VR Sbjct: 280 ALAEARLGDAYRITEKQARYEQIDAIKADVVAQITAEDEEVSEGKIIDIFTALESQIVRG 339 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 340 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 399 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 400 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 459 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI GDEDH Sbjct: 460 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDILGDEDH 519 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 520 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 579 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA+ ++ Sbjct: 580 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 639 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I IT E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 640 VMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLQ 699 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 700 VGQEVMVKVVEIDRQGRIRLTMK 722 >gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis SK2] gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis SK2] Length = 697 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/697 (49%), Positives = 470/697 (67%), Gaps = 14/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +I++ + LETG+IARQ+ AV+ G+T VL TVV + GQ+FFPLT Sbjct: 1 MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGG+L+RE RP+E E L R+IDR IRPLF K + NE QV+ VM Sbjct: 61 VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D P + +++ SAAL +SG+PF GP+ A+V Y +G Y+LNP E + +LDL V+ Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A E + D+ Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTE-----TWDWKP 235 Query: 240 LE--EEMSQMIKEDLRVSC----FIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIV 292 E E + IK+ + I EK R ++ +L+ V+ F++ E + E+ Sbjct: 236 AEQNETLKAAIKDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +F I+ VVR ++ K R+DGR + VR I QVG L +THGS+LF RG+TQAIV Sbjct: 296 DLFGKIEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG D Q++D+L G+ ++ FM+ YNF P GE +G+P RREIGHGRLARR + V Sbjct: 356 TLGGMRDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAV 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D Sbjct: 416 VPSVQDFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDG 475 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL QA GRLHI Sbjct: 476 RYAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K ++ESR ++ + P + + I PD+IR+VIG GG IR + E+TG ++I+DDG Sbjct: 536 LGEMNKAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +VKI + + + A + IT EV IY+G+V +V+DFGAFV +GL+HISQ Sbjct: 596 SVKIYGETREKADEAVRRVEEITAEAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ ERV K +D V EG+ + VK+LD D RG+IKLSMK Sbjct: 656 IAEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692 >gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] Length = 696 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/690 (49%), Positives = 478/690 (69%), Gaps = 9/690 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 VHTV+ E G+ + +ETG+IA+Q+ GAV+ G+T+VL T V +S K+GQ FFPLTVNY Sbjct: 2 VHTVQTECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QE+ YA G+IPG + +RE RP++NE L R+IDR IRPLF + + N+TQV+ V+ D + Sbjct: 62 QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQ 182 P +++M+ ASAALM+S +PF GP+ G +V ++G ++ NP + E+Q +++ ++ ++ Sbjct: 122 HDPGILAMIGASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAASK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDFS 238 DA+LMVE A+++SE+ +L+AI FG + ++ A ++K+A + P + + D Sbjct: 182 DAILMVEGSASEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKRNIPAPVVNTD-- 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L+ + + KE++R + I K R ID + K V+ + E +E ++ + E++ Sbjct: 240 -LKARVDALAKEEMRGAVRIKTKVERHDAIDAITVKTVAALAEEFEG-SEKDVKAFIEEL 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ R+DGRD++T+R+I+ +VGLL R HGS+LF RG+TQ+IV TLGT Sbjct: 298 EYDLVREHIIKDGERIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSV 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +DSL G R F++HYNF P + GE S AP RREIGHG LA RA+ VLP+ Sbjct: 358 DEQRIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDD 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVS+ITES+GSSSMATVCG SL++MDAG+PI PVAGIAMGL+K+GDDF ILSD Sbjct: 418 FPYTIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD 477 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT G+TA+QMD+KIGG++ IM AL QAK GR+HIL EM+K Sbjct: 478 ILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKT 537 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++ SR L F PR+ + + D+IR+VIG GGK IR + E TG ++IDD G + IAS+ Sbjct: 538 IATSRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIDDTGKINIAST 597 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A +MIR++T E K+Y G V K+M+FGAFV DGLVH+S+L TERV Sbjct: 598 NKEACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVK 657 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD++KEGD V VK + D +GKIKLS K Sbjct: 658 NVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687 >gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565] gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565] Length = 715 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/682 (50%), Positives = 475/682 (69%), Gaps = 4/682 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 ++ + LETG +ARQ+ AV+ + +T V TVV + G+DFFPLTVNYQERTYA Sbjct: 9 QYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+ VM + SP +V Sbjct: 69 AGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ ASAAL +SG+PF GP+ A+V Y+NGQYVLNP E Q LDL V+GT +AVLMV Sbjct: 129 AMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247 E EA LSE+V+L A+++GH + + VI AI++ A +P ++ L+ +++++ Sbjct: 189 ESEAAILSEEVMLGAVVYGHEQMQTVINAINEFAAAVGTKPWDWTPPAVNEALKAKVAEL 248 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 +L + I EK VR + I +K ++V + + +I F +++++VR + Sbjct: 249 ASAELGEAYRITEKAVRYETIAAIKGRVVEQVIASGVEEDAKKIGEEFHSLESRIVRGRV 308 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + + R+DGRD E +R +S G+L R HGS+LF RG+TQAIVV TLGT D Q +D L+ Sbjct: 309 VRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELT 368 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G + + FM+HYNF P GE MG+P RREIGHGRLA+R + V+P A+FPY +R+VS Sbjct: 369 GNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVS 428 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDHLG Sbjct: 429 EITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLG 488 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QA+ RLHIL M + + R Q+ Sbjct: 489 DMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQIS 548 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEIEAA 606 +F PR+ + I P++I++VIG GG VIR + E+TG + +DDDGTV+I A ++ A +EA Sbjct: 549 DFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAI 608 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R I +IT EVN+IY+G+VV++ DFGAFV+ +DGLVHISQ++ RV +D + Sbjct: 609 RR-IEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADHLTI 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 GD V VK+L+ D +G+++LS+K Sbjct: 668 GDVVKVKVLEVDRQGRVRLSIK 689 >gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax ferrireducens T118] gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118] Length = 706 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/700 (49%), Positives = 481/700 (68%), Gaps = 6/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + +ETG IARQ+ GAVL TVVLATVV K GQDFFPLT Sbjct: 3 IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE V+++ + Sbjct: 63 VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++A SAAL +SG+PF GP+ A+V YING+YVLNP + S +DL V+ Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L A++FGH + I AI +L + K V D K +K Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKP--VWDWKAPAK 240 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++ + L + I K R + + +++ + +++ + + Sbjct: 241 DEPLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADLKLDGVAFDSVAVEGMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+LSG + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++E++ ++ F PR+ M I PD+IR+VIG GG VIR + E+TG ++NID+DGT+ IA Sbjct: 541 EAMAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A+ E A+ I+ IT E+ KIY+G + K++DFGA V+ +DGL+HISQ++ ER Sbjct: 601 SADPAKAEEAKRRIQQITAEVEIGKIYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V K +D + EG V VK+++ D++G+IKLSMKV+ G+ Sbjct: 661 VEKVTDYLSEGQIVKVKVMETDEKGRIKLSMKVLLDRPGQ 700 >gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 712 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/685 (49%), Positives = 477/685 (69%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V TVV + G+DFFPLTVNYQERTY Sbjct: 8 FQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+ VM + SP + Sbjct: 68 AAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ ASAAL +SG+PF GP+ A+V Y+NGQYVLNP E Q LDL V+GT +AVLM Sbjct: 128 VAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EA LSE+V+L A++FGH + + VI AI++ A +P + ++ L+ ++++ Sbjct: 188 VESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEALKAKVAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + +L + I EK VR + I +K ++V + + +I F +++++VR Sbjct: 248 LATAELGEAYRITEKAVRYETIGAIKARVVEQVIASGVEEDAKKIGEEFHSLESRIVRGR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ + R+DGRD E +R +S G+L R HGS+LF RG+TQA+VV TLGT D Q +D L Sbjct: 308 VVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDEL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + + FM+HYNF P GE MG+P RREIGHGRLA+R + V+P +FPY +R+V Sbjct: 368 TGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEFPYVVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QA+ RLHIL M + + R ++ Sbjct: 488 GDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 +F PR+ + I P++I++VIG GG VIR + E+TG + +DDDGTV+IA+ + +AA Sbjct: 548 SDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAA---VDGDAA 604 Query: 607 REMIR---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E IR +IT EVN+IY+G+VV++ DFGAFV+ +DGLVHISQ++ RV +D Sbjct: 605 KEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +K GD V VK+L+ D +G+++LS+K Sbjct: 665 LKIGDVVKVKVLEVDRQGRVRLSIK 689 >gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida LFI1238] gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida LFI1238] Length = 718 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/699 (48%), Positives = 492/699 (70%), Gaps = 19/699 (2%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+A+ +T V +VV + GQDFFPL Sbjct: 10 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 69 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 70 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 129 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + +P +++M+A SAAL ++G+PF GP+ A+V +ING+ VLNP E S LDL V Sbjct: 130 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 189 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVI 232 SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A A + P+V Sbjct: 190 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVV- 248 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 ++L+ +++++ + L + I EK R +Q+ +K ++V+ ++ + +E EI Sbjct: 249 ----NAELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIR 304 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V Sbjct: 305 GMLGALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTA 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ D Q +DSL G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V Sbjct: 365 TLGTQRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDD Sbjct: 425 MPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDD 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL Sbjct: 485 FVVLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M + +S +R + ++ PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT Sbjct: 545 TVMDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +KIA++ A AA+E IR I ++ EV KIY G+V++++DFGAFV G ++GLVHI Sbjct: 605 IKIAATEGA---AAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHI 661 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SQ++ ER+ K +D ++ G V K+L+ D +G+I+LS+K Sbjct: 662 SQIAEERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 700 >gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42] gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42] Length = 727 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/707 (48%), Positives = 485/707 (68%), Gaps = 14/707 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V Y+NG+YVLNP + S LDL V+ Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA QLSE+++L A++FGH + K I AI +L + K +P D Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ + + + LR + I K R + + + ++ E ++ ++ ++ Sbjct: 243 TFIAKV----TALAEGKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEAL 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TL Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 359 GTERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F Sbjct: 419 SKDEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL + Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + E++ ++ F P++ M I P++IR+VIG GG IR + ++TG ++NI++DGT+ Sbjct: 539 MQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IA++ A+ + A+ I IT EV KIY+G V K++DFGA ++ +DGL+HISQ++ Sbjct: 599 IAATEAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 ERV K D ++EG V VK+L+ DD+G++KLSMK + ++G+P Sbjct: 659 ERVEKVGDYLQEGQIVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705 >gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] Length = 714 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/699 (49%), Positives = 485/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291 E ++++ DL + + +K R ++ ++ + E + ++ + Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM 21326] gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM 21326] Length = 706 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/694 (49%), Positives = 483/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVINAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] Length = 714 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/699 (49%), Positives = 486/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E ++++ DL + + +K R ++ ++ K ++ + ++ + Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEADALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida GB-1] gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1] Length = 701 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/681 (49%), Positives = 477/681 (70%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTADAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA AK +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + ++ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAA+ Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP 102891] gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP 102891] Length = 710 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVISAINEFAAEVATPAWDWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I + ++ +E N EI ++F D Sbjct: 241 TALVAKIAELAETKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAQEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25] gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25] gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25] gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25] Length = 711 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/694 (49%), Positives = 486/694 (70%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + I+AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIKAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+++++++ + L + I EK R +I+++ ++ +E + EI ++F D Sbjct: 241 TALKDKIAELAEAKLVEAYKITEKMARYDRINEIAAEVNEVLLAEDPEADTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] Length = 711 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/691 (49%), Positives = 484/691 (70%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + P +V+M+ SAAL +SG+PF GP+ A+V +INGQ VLNP E DQ LDL V Sbjct: 121 VNPNVQPDIVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI AI++ A A + ++ Sbjct: 181 AGTEGAVLMVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+E+++Q+ + L + I EK R +++ +K +++ +E S + +I + Sbjct: 241 TALKEKIAQLAEVRLTEAYQIIEKMARYEKVAAIKADVIAAILAEDDSQDVMKIKKLLGA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +VVR ++ + R+DGR+ + +R + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKQVVRGRIIAGEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ FM+HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGERKDYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSAD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ ++F++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I IT EV KIY G+V ++ DFGAFV +DGLVHISQ++ +R+ Sbjct: 601 TDGDQAQEAIRRILQITAEVEVGKIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SDV+ EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDVLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC 23685] gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC 23685] Length = 713 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/683 (49%), Positives = 478/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ T +T V TVV + ++GQDFFPLTVNYQER Sbjct: 14 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 73 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 74 YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q LDL V+GT +AVL Sbjct: 134 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 193 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I LA K + + + L++ +S Sbjct: 194 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQQRVS 253 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 +M + L + I EK R ++D++K+ +++ +E +S + GEI + ++ VVR Sbjct: 254 EMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDASLDAGEISDILGALEKSVVRG 313 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 314 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 373 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P +FPYT+R+ Sbjct: 374 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYTVRV 433 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 434 VSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 493 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL+ M + ++ R Sbjct: 494 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINAPRGD 553 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 554 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 613 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 614 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 673 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 674 MGQEVAVKVLEVDRQGRVRLSIK 696 >gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 709 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/699 (48%), Positives = 492/699 (70%), Gaps = 19/699 (2%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+A+ +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + +P +++M+A SAAL ++G+PF GP+ A+V +ING+ VLNP E S LDL V Sbjct: 121 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVI 232 SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A A + P+V Sbjct: 181 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVV- 239 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 ++L+ +++++ + L + I EK R +Q+ +K ++V+ ++ + +E EI Sbjct: 240 ----NAELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIR 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V Sbjct: 296 GMLGALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ D Q +DSL G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V Sbjct: 356 TLGTQRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAV 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDD Sbjct: 416 MPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDD 475 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL Sbjct: 476 FVVLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHIL 535 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M + +S +R + ++ PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT Sbjct: 536 TVMDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGT 595 Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +KIA++ A AA+E IR I ++ EV KIY G+V++++DFGAFV G ++GLVHI Sbjct: 596 IKIAATEGA---AAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHI 652 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SQ++ ER+ K +D ++ G V K+L+ D +G+I+LS+K Sbjct: 653 SQIAEERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 691 >gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri A1501] gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri A1501] Length = 701 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 480/681 (70%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV ++ + FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI V+ ++ P + +M+ Sbjct: 75 GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ SLD+ V+GT+DAVLMVE EA Sbjct: 135 SAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K ++ + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQANTALLDAIRSEFGAA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I E ++ K R ++D+L++++V+ FS E + GE+ F +I+ + VR + Sbjct: 255 ISEAYTITI----KQQRYARLDELREQVVAKFSGEEGQPSGGEVKDAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMGA RREIGHGRLARR + +LP +FPYT+R+VS Sbjct: 371 GEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +MS+V+++SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMSQVIAQSRSELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAA+ Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + SIT E+ KIY G+V +++DFGAFV+ +DGLVHISQ+S +R+ K +DV+KEG Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691 >gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia MC0-3] gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia MC0-3] Length = 715 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/695 (49%), Positives = 486/695 (69%), Gaps = 11/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH + + I+AI +L + K D + +K Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAAK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E ++++ + DL + + +K R ++ ++ K ++ + ++ + Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + ERV +D +KEG V VK++ D++G+++LS Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695 >gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis HAW-EB4] gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis HAW-EB4] Length = 704 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/689 (51%), Positives = 474/689 (68%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 12 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVII V+ D E SP V+ Sbjct: 72 AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V Y+NG+Y+LNP + + S L+L V+GT AVLMV Sbjct: 132 SMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTDSAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242 E EA+ L E+V+L A+++GH++ + VI+AI +L K P+ V D +K+++ Sbjct: 192 ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNK-PVWDWAAPVQDETLVAKIKD 250 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + E ++ K R Q+ +K +E+ N EI + ++ KV Sbjct: 251 LAEAGLTEAYQIEV----KQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEKKV 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ R+DGR+ + VR ++ G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 307 VRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 367 IDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 427 VRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGSH 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + E PR+ + I P++IR+VIG GG IR + E+TG + +DDDGTVKIASS+ Sbjct: 547 RGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG-- 604 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV +Y G+VV+++DFGAFV +DGLVHISQ++ ERVA Sbjct: 605 -EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ G V VK+++ D +G+++LSMK Sbjct: 664 VSDYLEVGQEVKVKVMEVDRQGRVRLSMK 692 >gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis Bt4] Length = 713 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/701 (48%), Positives = 486/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289 L ++++ + +L + I +K R ++ ++ + E S ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVSADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 710 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A++ + ++ Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] Length = 697 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/695 (50%), Positives = 476/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+YVLNP ++ Q LDL V+ Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 +L ++ + + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E+++I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISMHAPTFEVISINPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQDVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria AMMD] gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria MC40-6] gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD] gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MC40-6] Length = 714 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/699 (49%), Positives = 485/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++ DL + + +K R ++ ++ + + + ++ + Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM 9187] gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM 9187] Length = 720 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/683 (50%), Positives = 477/683 (69%), Gaps = 18/683 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + +ETG +ARQ+ AV+ + +T VL TVV + +G+DFFPLTVNYQERTYA G+IPG Sbjct: 15 VTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVNYQERTYAAGRIPG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+ +RE RP+E E L +R+IDR IRPLF + + NE QV+ VM + SP +V+M+ S Sbjct: 75 GFFKREGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGTS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL +SG+PF GP+ A+V YIN QY+LNP + E Q S LDL V+GT AVLMVE EA Sbjct: 135 AALAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLDLVVAGTAAAVLMVESEAAI 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS---KLEEEMSQMIK 249 L E+V+L A+++GH++ + VI+A+++ A +P V + + + K+ E I Sbjct: 195 LPEEVMLGAVVYGHDQLQTVIKAVNEFAAEVGTKPWNWVAPAANVTLKAKIAELAVAAIG 254 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 E R++ EK VR I LK+++V+ + + + GE+ +F ++++ VVR +L Sbjct: 255 EAYRIT----EKAVRYDAISALKQRIVAEIVAADETQDAGEVADLFHELESDVVRGRILR 310 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 + R+DGRD + +R +S G+L R HGS+LF RG+TQA+V TLGT D Q +D ++G Sbjct: 311 GEPRIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEITGE 370 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 + + FM+HYNF P GE MG+P RREIGHGRLARR + V+P A+FPY +R+VSEI Sbjct: 371 RTDRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLARRGVSAVIPSQAEFPYVVRVVSEI 430 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 TES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD F++LSDI GDEDHLG M Sbjct: 431 TESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSFVVLSDILGDEDHLGDM 490 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+TA+QMD+KI GI++ IM +AL+QA+ RLHIL M K + +R + +F Sbjct: 491 DFKVAGTSEGVTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKAIGVARDDISDF 550 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 PR+ + I P++I++VIG GG VIR + E+TG + ++DDGTVKIA+ S EAA+E Sbjct: 551 APRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIELEDDGTVKIAAVSG---EAAQEA 607 Query: 610 IRSI----TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 IR I DV E+ +IY+G+V ++ +FGAFV+ +DGLVHISQ++ ERV SD +K Sbjct: 608 IRRIQALTADV-EIGRIYEGKVTRLAEFGAFVNILPGKDGLVHISQITDERVKDVSDYLK 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD V K+L+ D +G+I+LS+K Sbjct: 667 VGDMVRTKVLEVDRQGRIRLSIK 689 >gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 697 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/695 (49%), Positives = 476/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIVRKEFQYGQHTVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAA+ ++ +PF GP+ GA+V ING+Y+LNP ++ + LDL V+ Sbjct: 122 DKTMDADIAAMIGASAAMSIAAVPFRGPIAGARVGLINGEYILNPTHEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + ++AI + A A E + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPSKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+LSGT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSENGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis EO147] gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis C6786] Length = 714 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/701 (48%), Positives = 489/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKVVKEFQWGQHKVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA QL EDV+L A++FGH + + I+AI +L + K +P + Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWNWQPAAKNE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE---- 290 +++ E + + DL+ + I EK R ++ ++ + + E ++ N Sbjct: 243 ALIARVTE----LAQADLQAAYQIREKQSRSTKLKEVYAAATAKLAEEAAASNAEAADAA 298 Query: 291 -IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M++ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 722 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/694 (49%), Positives = 478/694 (68%), Gaps = 6/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + +ETG IARQS GAVL TVVLATVV K GQDFFPLT Sbjct: 24 IFNKVTKTFQWGQHTVTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLT 83 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE V+++ + Sbjct: 84 VDYLEKSYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSL 143 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V Y+NG+YVLNP + S +DL V+ Sbjct: 144 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMDLVVA 203 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + K I AI +L + K V D K ++ Sbjct: 204 GTEAAVLMVESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDAGKP--VWDWKAPAR 261 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E ++++ K+ L + I K R + + + ++ ++ ++ + Sbjct: 262 DEALIAKVDAHGKDKLVAAYQIRNKQARTQACRAAYADVFAGLKADGVEFDSVKVEGMLF 321 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+AK+VR +L + R+DGRD+ TVR I + G+L RTHGSSLF RG+TQA+V+ TLGT Sbjct: 322 DIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGT 381 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+LSG + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP Sbjct: 382 ERDAQRIDALSGEYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTK 441 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY+LR+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 442 EEFPYSLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDNRFAVL 501 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL EM Sbjct: 502 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARVHILGEMQ 561 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++E+R ++ F PR+ I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA Sbjct: 562 KSMAEARTEVSNFAPRLFSFKINPEKIRDVIGKGGSVIRALTEETGTQINIEEDGTITIA 621 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A+ E A+ I IT E+ K+Y+G + K++DFGA V+ +DGL+HISQ++ ER Sbjct: 622 SSDPAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 681 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K +D + EG V VK+L+ D++G+IKLSMK + Sbjct: 682 VEKVTDYLSEGQIVKVKVLETDEKGRIKLSMKAL 715 >gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2] gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2] Length = 710 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/699 (48%), Positives = 480/699 (68%), Gaps = 13/699 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI++LAK K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + ++ +E + + E+ + I+ Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P GE +G+P RREIGHGRLA+R + V+P+ +FPY Sbjct: 364 NLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697 D ++ G V VK+L+ D +G+++LS+K Q G+P Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702 >gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri DSM 4166] Length = 701 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/681 (50%), Positives = 480/681 (70%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV +S + FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI V+ ++ P + +M+ Sbjct: 75 GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ SLD+ V+GT+DAVLMVE EA Sbjct: 135 SAALAISGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K ++ + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQANTALLDAIRSEFGAA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I E ++ K R ++D+L++++V+ FS E + G++ F +I+ + VR + Sbjct: 255 ISEAYTITI----KQQRYARLDELREQVVAKFSGEEGQPSAGDVKDAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMGA RREIGHGRLARR + +LP +FPYT+R+VS Sbjct: 371 GEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++V+++SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQVIAQSRSELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAA+ Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + SIT E+ KIY G+V +++DFGAFV+ +DGLVHISQ+S +R+ K +DV+KEG Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691 >gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1] Length = 708 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISSEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida] Length = 701 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + V+ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+GD F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++V+ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + +AA+ Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis Bu] Length = 715 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/699 (49%), Positives = 487/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ + S LDL V+ Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSEDV+L A++FGH + + I+AI L + K D + K Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291 E ++++ + DL + + +K R ++ ++ + + + ++ + Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTAAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PAO1] gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2] gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa LESB58] gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa C3719] gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 2192] gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PAb1] gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 39016] gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PAO1] gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa C3719] gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 2192] gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa LESB58] gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 39016] Length = 701 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/696 (49%), Positives = 490/696 (70%), Gaps = 22/696 (3%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + ++ + LETGRIARQ+ GAVL T + VL TVV +S +G+DFFPL+V+YQE Sbjct: 5 TKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + +S Sbjct: 65 KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSD 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P + +M+ SAAL +SG+PF GP+ A+V + Y+LNP ++ Q S LD+ V+GT+D Sbjct: 125 PDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTED 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA----------KMCAKEPIVID 233 AVLMVE EA++L+ED +L A++F H+E + VI A+ +LA K A+ ++++ Sbjct: 185 AVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENTVLVN 244 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIV 292 + ++ E+ + I + ++ K R ++ +L+ + V+ F+ E + E+ Sbjct: 245 A-----IKAELGEAISQAYTITI----KQDRYNRLGELRDQAVALFAGEEEGKFPASEVK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 VF ++ + VR +++ K R+DGRD+ TVR + +VG+L +THGS+LF RG+TQA+VV Sbjct: 296 DVFGLLEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D+L G +++ FM+HYNF P + GE RMG+P RREIGHGRLARR + + Sbjct: 356 TLGTARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAM 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 LPTQDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEK 475 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA RL+IL Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNIL 535 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M++V+++ R +L E P + M I D+IR+VIG GG IRGI E+T A ++I+DDG+ Sbjct: 536 GQMNQVIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGS 595 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 VKI + EAA+ + +IT E+ KIY G+V +++DFGAFV+ +DGLVHISQ+ Sbjct: 596 VKIYGETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQI 655 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S +R+ K +DV++EG V V +LD D+RG+IKLS+K Sbjct: 656 SDKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIK 691 >gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 707 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/686 (49%), Positives = 480/686 (69%), Gaps = 8/686 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG IARQ+ AV+ +T V T V + +K+GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASA L LSG+PF GP+ A+V +IN QYVLNP DE + S LDL V+GT +AVL Sbjct: 128 IVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVAGTDNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH++ + VI+ I++L K KE + ++ L + ++ Sbjct: 188 MVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 Q+ + + + I EK R Q+D +K+++ + +E + + E+ + ++ +VVR+ Sbjct: 248 QLAESRMGDAYRITEKQERYAQVDLIKEEVTAVLVAEDENVDVSEVTDILASLEKQVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQ 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A FPYT+R+ Sbjct: 368 LMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDHADFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G+DF++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGEDFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL M + ++ R + Sbjct: 488 LGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREE 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + Sbjct: 548 ISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGIK--- 604 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 A+E IR I D+ EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D Sbjct: 605 AKEAIRRIEDITAEVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+L+ D +G+I+LSMK Sbjct: 665 YLQMGQEVPVKVLEIDRQGRIRLSMK 690 >gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 712 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + + Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVDSSAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMVRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVTVKVVEIDRQGRIRLTMK 689 >gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phytofirmans PsJN] gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phytofirmans PsJN] Length = 718 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP R + +LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L ++FGH + + I+AI L + K D + +K Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++ + DL + + +K R ++ ++ + ++ ++ + Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VRT +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M+ +S + L ++ PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LSKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ ER+ +D +K+G V VK++ D++G+++LS K + Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida KT2440] gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida KT2440] Length = 701 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + V+ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+GD F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++V+ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + +AA+ Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] Length = 709 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/690 (50%), Positives = 480/690 (69%), Gaps = 13/690 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + + L LETG IARQS GA++ + +TVVL TVV + K QDFFPLTV+YQERTY Sbjct: 13 LSYGKHQLTLETGEIARQSSGAIMVSLDDTVVLVTVVGRKDAKPDQDFFPLTVDYQERTY 72 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE Q++ VM D + + Sbjct: 73 AAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDSDI 132 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ ASAAL +SG+PF+GP+ A+V Y+NGQYVLNP DE + +DL V+GT AVLM Sbjct: 133 PAMIGASAALAISGIPFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLVVAGTAKAVLM 192 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KLE 241 VE EA +LSEDV+L A++FGH + + VI AI+++A + D D++ L Sbjct: 193 VESEAQELSEDVMLGAVVFGHEQMQAVINAINEMADSVGQ-----DDWDWTPAPKNEALI 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQA 300 ++ + + +L+ + + +K R +Q+D ++ K+ ++ E + + EI +F ++A Sbjct: 248 ARINALAENELKAAYAVRQKQARTQQVDAIRAKVSEALATPEFENVSRNEIGELFSALEA 307 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR +L + R+DGRD+ TVR I+ + G+L RTHGS LF RG+TQA+VV TLG+ D Sbjct: 308 KIVRGQILSGEPRIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDS 367 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G + FM+HYNF P +TGE R+G P RREIGHGRLA+RA+ VLP + Sbjct: 368 QTIDALQGEYSDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALVAVLPSEEECG 427 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+KDG F +L+DI Sbjct: 428 YAIRVVSEITESNGSSSMASVCGGCLSLMDAGVPVKTHVAGIAMGLIKDGGRFAVLTDIL 487 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAG+D GITA+QMD+KI GI++ IM +AL QAK GRLHIL M + + Sbjct: 488 GDEDHLGDMDFKVAGSDKGITALQMDIKINGITKEIMQVALSQAKEGRLHILGIMKQAMP 547 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R ++ +F PR+ M I P++IR+VIG GG VIR + E+TG ++IDD+G + IA S Sbjct: 548 SVRPEVSDFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDEGNITIACVSG 607 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 E A++ I I EV KIY+G VVK++DFGA V+ +DGL+HISQ+S ER+A Sbjct: 608 DAGELAKKRIEDIVAEVEVGKIYEGPVVKLLDFGALVNILPGKDGLLHISQISHERIANV 667 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SD +KEG V VK+L+ DD+G+++LSMK + Sbjct: 668 SDHLKEGQVVKVKVLEVDDKGRMRLSMKAL 697 >gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80] gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3] gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2] gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9] gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae MJ-1236] gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10] gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757] gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80] gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3] gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2] gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9] gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236] gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10] gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757] Length = 709 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida W619] gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619] Length = 701 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + ++ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1] gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1] gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida BIRD-1] Length = 701 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + V+ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKDIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+GD F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++V+ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + +AA+ Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 715 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +V+ +++ + +EG I+ + +++ +VR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVVAQLTTQDETISEGAIIDIITALESSIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ +A Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 G V VK+++ D + +I+L+MK D N P+ Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697 >gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 40B] gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 40B] Length = 711 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + I+AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIQAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+ +++ + + L + I EK R +I ++ ++ +E + EI ++F D Sbjct: 241 TALKNKIADLAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLLAEDPEADTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR+ ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + E AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis TXDOH] gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia thailandensis E264] Length = 713 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/701 (48%), Positives = 486/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] Length = 697 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ A+V ING+YVLNP ++ Q LDL V+ Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E + Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPAKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFED 297 L E++ + + + I K R +D L + V+ F E+ E V+ +FED Sbjct: 242 TLREQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGLAEEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+LSGT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+GD F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGDRFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881] gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881] Length = 697 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/697 (49%), Positives = 470/697 (67%), Gaps = 14/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +I++ + LETG+IARQ+ AV+ G+T VL TVV + ++FFPLT Sbjct: 1 MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA G+IPGG+L+RE RP+E E L R+IDR IRPLF + NE QV+ VM Sbjct: 61 VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D P + +++ SAAL +SG+PF GP+ A+V Y +G Y+LNP E + +LDL V+ Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFNGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A E + D+ Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTE-----TWDWKP 235 Query: 240 LE--EEMSQMIKEDLRVSC----FIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIV 292 E E + IK+ + I EK R ++ +L++ V+ F++ E + GE+ Sbjct: 236 AEQNETLKAAIKDKFGAALGEAYTITEKMARYAKVGELREACVAEFATGEEGAPEAGEVK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +F I+ VVR ++ K R+DGR + VR I QVG L +THGS+LF RG+TQAIV Sbjct: 296 ELFGKIEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG D Q++D+L G+ ++ FM+ YNF P GE +G+P RREIGHGRLARR + V Sbjct: 356 TLGGMRDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAV 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D Sbjct: 416 VPSVQDFPYTVRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDG 475 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL QA GRLHI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K +SESR ++ + P + + I PD+IR+VIG GG IR + ++TG ++I+DDG Sbjct: 536 LGEMNKAISESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTDETGCTIDIEDDG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +VKI + + + A + IT EV IY+G+V +V+DFGAFV +GL+HISQ Sbjct: 596 SVKIYGETREKADEAVRRVEEITAEAEVGVIYEGKVTRVVDFGAFVAIMPGTEGLLHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ ERV K +D V EG+ + VK+LD D RG+IKLSMK Sbjct: 656 IAEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692 >gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] Length = 701 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA K +P V +++ F+ + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + V+ FS E + E+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSAAEVKDIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+GD F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++V+ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + +AA+ Sbjct: 551 ANAPTMISMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida subsp. salmonicida A449] gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 713 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/689 (49%), Positives = 475/689 (68%), Gaps = 4/689 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V TVV + G+DFFPLTVNYQERTY Sbjct: 8 FQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+ RRE RP+E E L SR+IDR IRPLF + + NE QV+ VM + SP + Sbjct: 68 AAGRIPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ ASAAL +SG+PF GP+ A+V Y+NGQYVLNP E Q LDL V+GT +AVLM Sbjct: 128 VAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLDLVVAGTANAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE EA LSE+V+L A+++GH + + VI AI++ A +P L+ ++++ Sbjct: 188 VESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPATNEALKAKIAE 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + +L + I EK VR I +K++++ + + +I F +++++VR Sbjct: 248 LATAELGEAYRITEKAVRYAAIGAIKQRVIEQVIAAGVEDDAKKIGEEFHSLESRIVRGR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ + R+DGRD E +R +S G+L R HGS+LF RG+TQAIVV TLGT D Q +D L Sbjct: 308 VVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDEL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + + FM+HYNF P GE MG+P RREIGHGRLA+R + V+P A+FPY +R+V Sbjct: 368 AGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GITA+QMD+KI GI++ IM +AL+QA+ RLHIL M + + R ++ Sbjct: 488 GDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEIEA 605 +F PR+ + I P++I++VIG GG VIR + E+TG + +DDDGTV+I A ++ A +EA Sbjct: 548 SDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEA 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 R I +IT EVN+IY+G+VV++ DFGAFV+ +DGLVHISQ++ RV +D +K Sbjct: 608 IRR-IEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLK 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 GD V VK+L+ D +G+++LS+K + T Sbjct: 667 LGDVVKVKVLEVDRQGRVRLSIKEANAPT 695 >gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4] gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4] Length = 710 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/694 (49%), Positives = 481/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI VM Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E D LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGSARVGHIDGQLVLNPSNTELDASKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++ A + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVIKAINEFKSEVATPAWDWVAPQEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E + EI ++F D Sbjct: 241 TALVNKIAELAEAKLDQAYQITEKMARYDRIHEIAGEVNDVLLAEDPEADTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQAIV TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G ++++F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTQTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PA7] gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PA7] Length = 701 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/695 (49%), Positives = 486/695 (69%), Gaps = 20/695 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + ++ + LETGRIARQ+ GAVL T + VL TVV +S +G+DFFPL+V+YQE Sbjct: 5 TKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + +S Sbjct: 65 KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSD 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P + +M+ SAAL +SG+PF GP+ A+V + Y+LNP ++ Q S LD+ V+GT+D Sbjct: 125 PDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTED 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---------EPIVIDS 234 AVLMVE EA++L+ED +L A++F H+E + VI A+ +LA K E V+ + Sbjct: 185 AVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENTVLVN 244 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS 293 ++L E +SQ + I K R ++ +L+ + V+ F+ E + E+ Sbjct: 245 AIKAELGEAISQ--------AYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKD 296 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 VF ++ + VR +++ K R+DGRD+ TVR + +VG+L +THGS+LF RG+TQA+VV T Sbjct: 297 VFGLLEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVAT 356 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D+L G +++ FM+HYNF P + GE RMG+P RREIGHGRLARR + +L Sbjct: 357 LGTARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAML 416 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F Sbjct: 417 PTQDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKF 476 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA RL+IL Sbjct: 477 AVLTDILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILG 536 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M++V++ R +L E P + M I D+IR+VIG GG IR I E+T A ++I+DDG+V Sbjct: 537 QMNQVIARPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRAICEETKASIDIEDDGSV 596 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 KI + EAA++ + +IT E+ KIY G+V +++DFGAFV+ +DGLVHISQ+S Sbjct: 597 KIYGETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQIS 656 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +R+ K +DV++EG V V +LD D+RG+IKLS+K Sbjct: 657 DKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIK 691 >gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii CbuG_Q212] gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii CbuG_Q212] Length = 696 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + ETG +ARQ+ GAV+ G+TV+L +VV + ++G+DFFPLT+NYQE+TY Sbjct: 8 FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D + + Sbjct: 68 AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAA+ LSG+PF G + A+V Y G+Y+LNP LDE + S LDL V+GT+DAVLM Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EA +L E V+L A++ GH + I+AI++ + EP +++ LE+ Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298 + + + L+ + I EK R QI ++ ++++ ++E ++ NE E+ +F ++ Sbjct: 244 WVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR +L + R+DGRDS+TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT Sbjct: 304 ERRIVREQILTGQPRIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G ++ +F+ HYNF P GEV M P RREIGHGRLA+RA+ PV+P + Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP PVAGIAMGL+K+ D + +LSD Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM AL QAK GRLHIL+ M+KV Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L + R Q+ + P+ M I P++IR+VIG GG VIR I E T ++I DDGT+KIA+ Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + E EAA+ I +T E+ K+Y+G VVK+ DFGAFV GLVHISQ++ ERV Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 D ++EG + VK+++ D +G+++LSMK +D Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696 >gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 334] gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii CbuK_Q154] gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 334] gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii CbuK_Q154] Length = 696 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + ETG +ARQ+ GAV+ G+TV+L +VV + ++G+DFFPLTVNYQE+TY Sbjct: 8 FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D + + Sbjct: 68 AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAA+ LSG+PF G + A+V Y G+Y+LNP LDE + S LDL V+GT+DAVLM Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EA +L E V+L A++ GH + I+AI++ + EP +++ LE+ Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298 + + + L+ + I EK R QI ++ ++++ ++E ++ NE E+ +F ++ Sbjct: 244 LVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR +L + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT Sbjct: 304 ERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G ++ +F+ HYNF P GEV M P RREIGHGRLA+RA+ PV+P + Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP PVAGIAMGL+K+ D + +LSD Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM AL QAK GRLHIL+ M+KV Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L + R Q+ + P+ M I P++IR+VIG GG VIR I E T ++I DDGT+KIA+ Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + E EAA+ I +T E+ K+Y+G VVK+ DFGAFV GLVHISQ++ ERV Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 D ++EG + VK+++ D +G+++LSMK +D Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696 >gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA 493] gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii Dugway 5J108-111] gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA 331] gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493] gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111] gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 331] Length = 696 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + ETG +ARQ+ GAV+ G+TV+L +VV + ++G+DFFPLTVNYQE+TY Sbjct: 8 FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI V+ D + + Sbjct: 68 AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAA+ LSG+PF G + A+V Y G+Y+LNP LDE + S LDL V+GT+DAVLM Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE EA +L E V+L A++ GH + I+AI++ + EP +++ LE+ Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298 + + + L+ + I EK R QI ++ ++++ ++E ++ NE E+ +F ++ Sbjct: 244 WVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR +L + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT Sbjct: 304 ERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G ++ +F+ HYNF P GEV M P RREIGHGRLA+RA+ PV+P + Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP PVAGIAMGL+K+ D + +LSD Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM AL QAK GRLHIL+ M+KV Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L + R Q+ + P+ M I P++IR+VIG GG VIR I E T ++I DDGT+KIA+ Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + E EAA+ I +T E+ K+Y+G VVK+ DFGAFV GLVHISQ++ ERV Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 D ++EG + VK+++ D +G+++LSMK +D Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696 >gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 759 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/705 (47%), Positives = 489/705 (69%), Gaps = 10/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ++GAVL TV+LATV +S K GQDFFPLT Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE V+++ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+ SAAL +SG+PF GP+ A+V YING+YVLNP + S +DL V+ Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSED++L ++FGH + I AI +L + K V D + ++ Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGGVVFGHEQANIAINAIHELVREAGKP--VWDWQAPAE 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E ++ + +E LR I K R + + + ++ + ++ G++ + Sbjct: 241 DEAFVAKVKDLAEEKLRAVYQIRSKQARTQALREANASVMEALKASGEPFDAGKVGDLLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I++K+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 AIESKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + FM HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ F P++ M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ + + A++ I IT E+ KIY+G VVK++DFGA ++ +DGL+HISQ++ ER Sbjct: 601 ATDAEKADVAKKRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ---NTGKP 697 V K +D + EG V VK+L+ D++G++KLSM+ ++D+ ++G+P Sbjct: 661 VEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705 >gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia AU 1054] gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia HI2424] gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054] gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424] Length = 715 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/695 (49%), Positives = 485/695 (69%), Gaps = 11/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E ++++ + DL + + +K R ++ ++ K ++ + ++ + Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + ERV +D +KEG V VK++ D++G+++LS Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695 >gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus S110] gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus S110] Length = 772 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/696 (47%), Positives = 480/696 (68%), Gaps = 6/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ+ GAV+ TV+LATVV ++ K GQDFFPLT Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +M+ SAAL +SG+PF GP+ A+V YINGQYVLNP + +DL V+ Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L ++FGH + I AI +L + K V D + ++ Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKP--VWDWQAPAE 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E ++ + +E LR I K R + + + +++ ++ G++ + Sbjct: 241 DEAFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKESGEPFDAGKVNDLLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I++K+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQ +VV TLGT Sbjct: 301 AIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ +F PR+ + I P++IR+VIG GG VIRG+ E+TG +NID+DGT+ IA Sbjct: 541 EAMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ + E A++ I IT E+ K+Y+G V K++DFGA ++ +DGL+HISQ++ ER Sbjct: 601 STDPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V K +D + EG V VK+L+ D++G++KLSMK + + Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTE 696 >gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas haloplanktis TAC125] gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Pseudoalteromonas haloplanktis TAC125] Length = 708 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/688 (50%), Positives = 475/688 (69%), Gaps = 9/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E + + LETG IARQ+DGAVLA+ G+T VL TVV R + GQDFFPLTVNYQER Sbjct: 7 EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF + NE QVI V+ + E P Sbjct: 67 YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ SAAL +SG+PF GP+ +V YI+G+YVLNP L E ++ LDL V+GT +AVL Sbjct: 127 MVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAGTDNAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243 MVE EA+ L+ED++L A+++GH + + +I AI + K A +P +K+ S LEE+ Sbjct: 187 MVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEF-KAEAGKPTWDWTAPAKNVS-LEEK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300 ++ + + + + I +K R + + K ++V+ +SE + S ++ EI +F ++ Sbjct: 245 VASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLTSELAEGESLDKQEIGKIFGSLEK 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR + + R+DGR+ + +R + G+L RTHGS++F RG+TQA+V TLGT D Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+GT +N FM++YNF P GE +G+P RREIGHG LA+R I V+P +FP Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTLTEFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI VAGIAMGLVK+ D F++LSDI Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QAK RLHIL M K +S Sbjct: 485 GDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDKAIS 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +L +F PR+ M IP +I VIG GG IR + E+TG + I DDGT+KIA++ Sbjct: 545 APSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I +T EV IY+G+VV+++DFGAFV+ +DGLVHISQ+STERV Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + EG V VK+L+ D +G+++LS+K Sbjct: 665 TDHLSEGQEVKVKVLEVDRQGRVRLSIK 692 >gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573] gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573] Length = 709 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia J2315] gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 713 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/695 (49%), Positives = 486/695 (69%), Gaps = 11/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ + S LDL V+ Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSEDV+L A++FGH + + I+AI +L + K D + K Sbjct: 181 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291 E ++++ + DL + + +K R ++ ++ K ++ + ++ + Sbjct: 239 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 299 GNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 419 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 539 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 599 VVTIASTSSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + ERV +D +KEG V VK++ D++G+++LS Sbjct: 659 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693 >gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila L48] gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Pseudomonas entomophila L48] Length = 701 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/681 (50%), Positives = 475/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PFEGP+ A+V + Y+LNP ++ SLD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI+A+ +LA AK +P +S F + E + Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWKPADKNSALFDAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + + ++ K R ++ +L+ + V+ FS E + GE+ +F +I+ + VR + Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSAGEVKDIFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ ESR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGESRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + +AA+ Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +DV+KEG Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDVLKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 693 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/685 (48%), Positives = 485/685 (70%), Gaps = 6/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AVL + +T V TVV + L+ Q FFP+TVNYQERT Sbjct: 8 KFQYGQHIVTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+ENEILI+R+IDR IRPLF K + NE Q+I V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSLNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL +SG+PF GP+ A++ YIN QY+LNP ++E SLDL +SGT+++VL Sbjct: 128 IVAIIGASAALSISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLDLIISGTEESVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLEEE 243 MVE EAN L+E+ +++AI +GH + K VI+ I AK + E + D LE+ Sbjct: 188 MVEAEANMLTEEQIINAINYGHEQQKIVIKNIEHFAKKVKIPVWEQCLYPVND--DLEKR 245 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + ++ ++++ + I +K +R +D +K K + SE+S +E EI S+ +I+ K+V Sbjct: 246 IIEISEQEIVKAYNIFDKVIRLDVLDKIKSKAIEIIISEYSGIDEFEITSIISNIERKIV 305 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +L ++R+DGR+ + +R + + G+L R HGS+LF RG+TQ++V VTLGT D Q + Sbjct: 306 RNRVLKNRIRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSRDAQNL 365 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L G + ++F+ HYNF P A GE+ +G+P RREIGHG+LA+R+I V+P+ FPYT+ Sbjct: 366 DELLGDKTDNFLFHYNFPPYAVGEIGMVGSPKRREIGHGKLAKRSILAVMPKLDLFPYTI 425 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEITES+GSSSMA+VCG+SLALMDAGVPIS +AGIAMGL+K+GDDF++L+DI GDE Sbjct: 426 RIVSEITESNGSSSMASVCGASLALMDAGVPISNAIAGIAMGLIKEGDDFVVLTDILGDE 485 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFK++G+ GITA+QMD+K+ GI+ IM +AL QAK R+HILN M K L+ R Sbjct: 486 DHLGDMDFKISGSKKGITALQMDIKVKGITNEIMKLALYQAKNARIHILNIMKKSLNVPR 545 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 + F PR+ + I P++I++VIG GG VIR + E+TG + I+DDGTVKI++ + Sbjct: 546 KDISIFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTTIEIEDDGTVKISAVMQEKA 605 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A + I+ IT EV +Y G+V +++DFGAFV ++GLVHISQ++ +RV K SD Sbjct: 606 KCAIQRIKEITAEVEVGSVYTGKVTRIVDFGAFVSIGIGKEGLVHISQIAHKRVDKVSDH 665 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ ++VK+L+ D +G+++LS+K Sbjct: 666 LRLHQEIFVKVLEVDRQGRLRLSIK 690 >gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira multiformis ATCC 25196] gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196] Length = 701 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/690 (50%), Positives = 477/690 (69%), Gaps = 13/690 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + + L ETG IARQ+ A++ + G+TVVL TVV +S K GQDFFPLTV+YQER+Y Sbjct: 7 VTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDYQERSY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + +RE RP+E EIL SR+IDR IRPLF + + NE QV+ V+ D E + Sbjct: 67 AAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEVDADI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ ASAAL+LSG+PF GP+ A++ YING+YVLNP Q L+L V+GT+ AVLM Sbjct: 127 PAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTRQAVLM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEE 242 VE +A +LSEDV+L AI++GH + + I+AI++LA EP D L Sbjct: 187 VESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPA----LAV 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQA 300 +++++ + DLR + +K VR + ID++ ++ + E + + V + F +++ Sbjct: 243 KIAELAENDLRAAFRQKQKQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFA-LES 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++VR+ +LD + R+DGRD+ TVR I+ + GLL RTHGS+LF RG+TQA+VV TLGT DE Sbjct: 302 RIVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDE 361 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP +F Sbjct: 362 QKIDALQGDYSERFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFG 421 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y+LR+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+K+G+ F +L+DI Sbjct: 422 YSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTDIL 481 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ I+ AL QA+ GR+HIL M +VL Sbjct: 482 GDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQVLP 541 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + E PR+ + I P++IR+VIG GG VIR + E+TG ++I DDGTV IA + Sbjct: 542 ARREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGTVMIACVNA 601 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 E A++ I IT EV ++Y G V+K++DFGA V +DGL+HISQ++ ERV Sbjct: 602 EGGELAKKRIEDITAEVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNV 661 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D +KEG V VK+L+ DD+G+++LSMK V Sbjct: 662 GDHLKEGQVVRVKVLEADDKGRLRLSMKAV 691 >gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC 29220] gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC 29220] Length = 710 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/699 (48%), Positives = 479/699 (68%), Gaps = 13/699 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI++LAK K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + ++ +E + + E+ + I+ Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 SLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697 D ++ G V VK+L+ D +G+++LS+K Q G+P Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702 >gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603] gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603] Length = 709 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp. SM9913] gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp. SM9913] Length = 708 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/688 (49%), Positives = 476/688 (69%), Gaps = 9/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E + + LETG IARQ+DGAVLA+ G+T VL TVV R + GQDFFPLTVNYQER Sbjct: 7 EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF + NE QVI V+ + E P Sbjct: 67 YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ SAAL +SG+PF GP+ ++V YING+YVLNP L E ++ LDL V+GT +AVL Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDNAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243 MVE EA+ L+EDV+L A+++GH + + +I+AI++ K A +P K+ + LEE+ Sbjct: 187 MVESEADVLAEDVMLGAVVYGHEQSQSIIKAINEF-KAEAGKPTWDWTAPEKNVA-LEEK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300 ++ + + + + I +K R + + K +V +SE + + ++ E+ VF ++ Sbjct: 245 VATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFGSLEK 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR + + R+DGR+ + +R + G+L RTHGS++F RG+TQA+V TLGT D Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+GT +N FM++YNF P GE +G+P RREIGHG LA+R I V+P +FP Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTEFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI VAGIAMGLVK+ ++F++LSDI Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVLSDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK RLHIL M + +S Sbjct: 485 GDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMDEAIS 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +L F PR+ M IP +I VIG GG IR + E+TG + I DDGT+KIA++ Sbjct: 545 APSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I +T EV IY+G+VV+++DFGAFV+ +DGLVHISQ+STERV Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + EG V VK+L+ D +G+++LS+K Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692 >gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 715 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTNKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +++ +++ + +EG I+ + +++ +VR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ +A Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 G V VK+++ D + +I+L+MK D N P+ Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697 >gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae NTUH-K2044] gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 711 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/693 (48%), Positives = 476/693 (68%), Gaps = 10/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+ I+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + ++ +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696 >gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] Length = 696 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/688 (49%), Positives = 480/688 (69%), Gaps = 11/688 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V++E GR + +ETG++A+Q+ GAV+ + G+T VL T V ++ K+GQDFFPLTVNYQE+ Sbjct: 5 VQVECGGRTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQEK 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+ +RE+RP++NE L R+IDR IRPLF + N+TQ++ V+ D ++ P Sbjct: 65 AYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDNDP 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 ++SMV ASAALM+S +PF+GP+ G +V I+G++V NP +E ++ +++ V+ ++DA+ Sbjct: 125 GILSMVGASAALMVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSDIEIVVAASKDAI 184 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSKDFSKL 240 +MVE A ++SE+ +L+AI FGH + ++ A +LA+ AK P V++ +K+ Sbjct: 185 IMVEGSAAEVSEEDMLEAIFFGHAAIQGLLAAQVELAEKAGVAKREVLPPVVNEALKAKV 244 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 +E +KE +R I K R ID + ++++ + E + EI D + Sbjct: 245 KELAYSRMKEAVR----IKSKVERHNTIDTITGEVLTALAEEFEGAAK-EIKGFLGDFEY 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR ++ R+DGRD++T+R I+ +VGLL R HGS+LF RG+TQA+VV TLGT DE Sbjct: 300 DLVREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDE 359 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +DSL G + F++HYNF P + GE S AP RREIGHG LA RA+ V+P+ FP Sbjct: 360 QRIDSLFGESKKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALARVVPKHESFP 419 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RIVS+I ES+GSSSMA+VCG S+++MDAG+PI PVAGIAMGL+K+GDDF ILSDI Sbjct: 420 YTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDIL 479 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT +G+TA+QMD+KIGG++ IM +AL+QA GRLHIL++M++ + Sbjct: 480 GDEDHLGDMDFKVAGTSTGVTALQMDIKIGGVTREIMGVALKQAHEGRLHILSKMAETIG 539 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 S+ +L F PR+ + + D+IR+VIG GGK IRGI E TG ++IDD G + IAS+ Sbjct: 540 TSKAELSTFAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDK 599 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A + A +MIR +T E K+Y G V KVM+FGAFV DGLVHIS+L TERV Sbjct: 600 AACDMAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNV 659 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +DV+KEGD V VK + D +GKIKLS K Sbjct: 660 TDVLKEGDKVLVKCIGIDKQGKIKLSRK 687 >gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae L20] gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 715 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +++ +++ + +EG I+ + +++ +VR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ +A Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 G V VK+++ D + +I+L+MK D N P+ Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697 >gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385] gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385] Length = 709 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 715 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/689 (48%), Positives = 476/689 (69%), Gaps = 2/689 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +++ +++ + +EG I+ + +++ +VR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q VD Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ +A Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 G V VK+++ D + +I+L+MK ++ +T Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695 >gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide adenylyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) / Polynucleotide adenylyltransferase (EC 2.7.7.19) [Burkholderia rhizoxinica HKI 454] Length = 768 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/701 (48%), Positives = 488/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 47 MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLT 106 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 107 VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSI 166 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + + +M+ ASAAL +SG+PF GP+ A+V YI+ Q+VLNP + + S LDL V+ Sbjct: 167 NPDIPADIPAMIGASAALAISGIPFNGPIGAARVAYIDNQFVLNPTRSQSKASKLDLVVA 226 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL E+V+L A++FGH + + I+AI L K K +P D Sbjct: 227 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKEGGKPEWDWQPAPKDE 286 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 +++ E + +L+ + I +K R ++ ++ + + + + + + Sbjct: 287 ALIARVTE----LALAELQAAYQIRQKQQRSAKLKEVYAAVTAKLAEQSVAAGTAVVDAA 342 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++A++VR+ +L+ + R+DGRD+ TVR I + G+L R HGS+LF RG+TQA+ Sbjct: 343 TVGNILFDLEARIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAL 402 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D++ G R FM+HYN P ATGE R+G+P RREIGHGRLA+R++ Sbjct: 403 VVATLGTKGDEQIIDAIEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRSL 462 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 P LP +F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 463 VPCLPGDDEFGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 522 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QA+ GRL Sbjct: 523 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAREGRL 582 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL++M+ + + +QL +F PR+ M I P++IR+VIG GG VIR + E+T ++I D Sbjct: 583 HILDKMTSAVPSTNMQLSQFAPRMITMKINPEKIRDVIGKGGSVIRALTEETNTTIDISD 642 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS+S + A++ I +IT EV +IY+G ++K++DFGA V+ RDGL+HI Sbjct: 643 DGVVTIASTSPEGMAEAKKRIENITAEVEVGQIYEGAILKLLDFGAIVNILPGRDGLLHI 702 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+++ ER+ +D +KEG V VK++ D++G+++LS+K + Sbjct: 703 SEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSVKAL 743 >gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] Length = 709 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVAIPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16] gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16] Length = 723 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/704 (48%), Positives = 485/704 (68%), Gaps = 10/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+ Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SG+PF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EANQLSEDV+L A+++GH + + I AI +L + K P + Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ E +++E ++ +K R +++ ++ + + ++ ++ E+ ++ Sbjct: 243 PLIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVNANVAAALAAAGVEADKVEVGNI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 D++AK+VR +L + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TL Sbjct: 299 MFDLEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DEQ +D+L+G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F Sbjct: 419 KDDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GRLHIL++ Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHK 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + +R +L PR+ M I PD+IR VIG GG I+ + ++TG ++I +DGT+ Sbjct: 539 MQEAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS+S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS++ Sbjct: 599 IASTSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ERV D +KEG V VKL+ D++G+++LS+K G I Sbjct: 659 ERVKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALTEEGGSI 702 >gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2207] gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2207] Length = 715 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETGRIARQ+ GAVL + +T VL TVV R K G DFFPL V+Y E Sbjct: 5 TKSFQYGNHTVTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHYIE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE RP E E L SR+IDR IRPLF +KNE QV+ VM + Sbjct: 65 KAYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVMSAEKNID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQD 183 P + +M+ SAAL +SG+PF GPV GA+V Y + Q Y+LNP E +LD+ V+GT+D Sbjct: 125 PDIAAMIGTSAALSISGIPFNGPVGGARVGYTDEQGYLLNPTYSELADSALDMVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242 AVLMVE EA++LSED++L ++F H E + VI I++LA K + + + L+ Sbjct: 185 AVLMVESEASELSEDIMLGGVLFAHQEMQSVITVIAELAAEVGKPRWDWVAEVENADLKT 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ DL + +K R +I+ L+ + +E E +I F+ ++ + Sbjct: 245 ALNDLVGADLDAAYQTVDKQARVVKINALRDIANAQLIAEDGPTAE-DIKDSFKKLEKSI 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGRD+ TVR I +VG+L + HGSSLF RG+TQAIV TLG+ D Q Sbjct: 304 VRGRIIRGEPRIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDAQM 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G + + FM+HYNF P + GE R+G SRRE+GHGRLARR I+ VLP +FPY Sbjct: 364 IDALEGRRDDPFMLHYNFPPYSVGEAGRIGFTSRREVGHGRLARRGINAVLPSPEEFPYA 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+ + +L+DI GD Sbjct: 424 MRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAVLTDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA + RLHIL EM+KV+S Sbjct: 484 EDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKVISTG 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ + PR+ +M I D+IR+VIG GG IRG+ E+ + ++IDD G VK+ S A Sbjct: 544 RDEVADTAPRMGVMQIDSDKIRDVIGKGGATIRGLCEEHNSTIDIDDSGAVKVYSEDTAG 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + AA + I +I PE IY+G+VV++++FGAFV+F DGLVHISQ++ ERVAK +D Sbjct: 604 LNAAMDAIAAIVADPEPGTIYEGKVVRIVEFGAFVNFMPGTDGLVHISQIAQERVAKVTD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + EG TV VK+L+ D+RG++KLS+K + G Sbjct: 664 YLSEGQTVRVKVLEIDNRGRVKLSIKEAQSDEG 696 >gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 715 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +++ +++ + +EG I+ + +++ +VR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL+ M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ +A Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 G V VK+++ D + +I+L+MK D N P+ Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697 >gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] Length = 699 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/697 (49%), Positives = 477/697 (68%), Gaps = 4/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ +VL T G VL VV + K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-SVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+Y+LNP ++ + LDL V+ Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E + Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + ++ F E E+ +FE+ Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPESDETGIADEVNELFEE 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR + QVG+L+R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+LSGT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY LR+VS+ITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P ++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A AA I+++T E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 A +DV+KEG V V++ D D+RG+IKL+MK ++Q++ Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQSS 698 >gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] Length = 706 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I L K + + + +L + + Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINVELHDRVK 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K +V+ +E + +E E+ + I+ VVR+ Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSIEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPYT+R+ Sbjct: 368 LIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIAS+ + + Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKY 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+I+LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRIRLSIK 690 >gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] Length = 709 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDGNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] Length = 730 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/695 (49%), Positives = 484/695 (69%), Gaps = 11/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 18 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 77 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKI GG+ RRE RP+E+E L SR+IDR +RPLFS+ + NE QV+I+V+ Sbjct: 78 VDYLEKTYSAGKIAGGFFRRECRPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSV 137 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ SLDL V+ Sbjct: 138 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 197 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QLSE+V+L A++FGH + + I+AI +L + K D + K Sbjct: 198 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 255 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291 E ++++ + DL + + +K R ++ ++ + + + ++ + Sbjct: 256 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 315 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 316 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 375 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 376 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 435 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 436 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 495 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI Sbjct: 496 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 555 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 556 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 615 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 616 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 675 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + ERV +D +KEG V VK++ D++G+++LS Sbjct: 676 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 710 >gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] Length = 711 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/693 (48%), Positives = 476/693 (68%), Gaps = 10/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+ I+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + ++ +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIDEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696 >gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2] gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51] gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae AM-19226] gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51] gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2] gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae AM-19226] Length = 708 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittGG] gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG] Length = 709 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ +V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E NEG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEINEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 711 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/687 (49%), Positives = 475/687 (69%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH++ + VI+ I+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K ++ + +E + + EI + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLVAEDETLDANEIGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPY Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRVYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+I+LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae R3021] gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 7P49H1] gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 22.4-21] gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 7P49H1] Length = 709 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223] gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451] gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451] gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223] Length = 709 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAALLAENEALDAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittHH] gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittHH] Length = 709 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVTIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. K90mix] gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. K90mix] Length = 695 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/690 (51%), Positives = 478/690 (69%), Gaps = 3/690 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H ++ + ETG IARQ+ GAVL ETVVL T V + + G+DFFPLTVNYQ Sbjct: 3 HKKSFQYGNHTVTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ERTYA GKIPGG+ +RE RP E E L SR+IDR IRPLF + +KNETQ++ VM + + Sbjct: 63 ERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P + +++ ASAAL LSG+PF GP+ A+V Y G+Y+LNP + S LDL V+GT+ Sbjct: 123 DPDIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLDLVVAGTEH 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 AVLMVE EA++LSE+ +L A++FGH + + I+AI +LA K + + LE+ Sbjct: 183 AVLMVESEASELSEEAMLGAVMFGHEQMQAAIQAIKELAAEAGKPAWDWQAPPSEASLED 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAK 301 + + + DL + I EK R ++I +L+ + V +SE S E V + F D++ + Sbjct: 243 RVKEAVGSDLVEAYQIAEKQARTQRISELRSQAVEAIASEDESGPSAEDVKTAFHDLEYR 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR +LD R+DGRD++TVR IS Q +L RTHGS++F RG+TQA+VV TLGT D Q Sbjct: 303 LVRDRILDGNPRIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D++ G +R+ FM+HYNF P TGE +G+P RREIGHGRLA+R + V+P+ +FPY Sbjct: 363 VIDAIEGERRDRFMLHYNFPPYCTGETGFVGSPKRREIGHGRLAKRGVAAVMPKAEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGL+K+GD F +LSDI G Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT +G+TA+QMD+KI GI+ IM AL QA+ GR+HIL M++VL Sbjct: 483 DEDHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEVLPS 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ PR M I PD+IR+VIG GG IR + E+TGA ++I DDGTVK+AS+ A Sbjct: 543 HREEMSSHAPRFITMKINPDKIRDVIGKGGATIRALTEETGATIDIQDDGTVKVASTDQA 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 A+ I +T EV + Y G+V K+MDFGAFV RDGLVHISQ+S ERV + Sbjct: 603 AGLEAKRRIEELTADIEVGRQYTGKVAKIMDFGAFVSILPGRDGLVHISQISDERVENVA 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 D + EGD+V VK+L+ D +G+I+LSMK V+ Sbjct: 663 DFLSEGDSVTVKVLEVDKQGRIRLSMKAVE 692 >gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587] gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39] gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM 11079-80] gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587] gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39] gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM 11079-80] Length = 709 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 22.1-21] gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittII] gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 22.1-21] gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittII] gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 10810] gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866] Length = 709 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52] gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395] gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52] gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395] gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395] Length = 712 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia vietnamiensis G4] gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4] Length = 715 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG +ARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + + +++ ASAAL +SGLPF GPV A+V YI+ YVLNP D+ + S LDL V+ Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K D + K Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEW--DWQPAPK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-----YFSSEHSSWNEGEI 291 E ++++ DL + + +K R ++ ++ + ++ + ++ + Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV Sbjct: 301 GNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M+ +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS+ Sbjct: 601 VVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 712 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/687 (49%), Positives = 474/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH++ + VI+ I++L K K +P + L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAANDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + ++ +E + + E+ + I+ Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKDETIATLVAEDETLDANELSEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 IIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDADKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+I+LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor 202] gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor 202] Length = 711 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/690 (48%), Positives = 478/690 (69%), Gaps = 16/690 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--------EPIVIDSKDFS 238 MVE EA+ L+E+ +L A++FGH + + VIE I + K K EP ++ + Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEP---NTDLIN 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 K++ I + R++ EK R +QID +K ++++ ++E + +EG+I+ + + Sbjct: 244 KVKALAEARIGDAYRIT----EKQARYEQIDAIKAEVIATLTAEDETVSEGKIIDIITAL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++++VR+ ++ + R+DGR +TVR + G+L RTHGS+LF RG+TQA+ V TLGT Sbjct: 300 ESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTER 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P + Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSD Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + R ++ +F PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA++ Sbjct: 540 IPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAT 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + E I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ RV Sbjct: 600 DNNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + +D + G V VK+++ D +G+I+L+MK Sbjct: 660 RVTDYLSVGQEVQVKVVEIDRQGRIRLTMK 689 >gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp. PRwf-1] gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp. PRwf-1] Length = 704 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/703 (49%), Positives = 478/703 (67%), Gaps = 17/703 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + E ++ + +ETGRIARQ++ +VL G VL VV K+GQ+FFPLT Sbjct: 3 MFNTISREFQYGNEQVVIETGRIARQAN-SVLVHMGGVSVLVAVVVKSDAKEGQNFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+ V+ Sbjct: 62 VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + + +M+ ASAAL +S PF GP+ GA+V +ING+YVLNP ++E + S LDL V+ Sbjct: 122 DKKHYADIAAMIGASAALSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I++LAK + +DF Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELAKAVGTQ-----KQDFVA 236 Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEG 289 ++L+E+++ E + + I +K R +++D++K + + SE + E Sbjct: 237 PELNAELKEKVTTQFGEQVAEAYAISDKQARYEKLDEIKAAAIDALAGDPESEEFAEKEA 296 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 +I ++ D++ + VR +L K R+DGRD +TVR + QVG+L THGS+LF RG+TQA+ Sbjct: 297 QIKEIYNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TLG D +DSL+GT ++ FM+HYNF + GE R G P RREIGHGRLARR + Sbjct: 357 VTTTLGNSRDVNLIDSLAGTIQDHFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGV 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +LP + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+ Sbjct: 417 QAMLPDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKE 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD F +LSDI GDEDHLG MDFKVAGT GITA+QMD+KI GI+ +IM AL+QA GR+ Sbjct: 477 GDRFAVLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITSDIMEKALEQAHAGRI 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HILN M++VL SR ++ P ++ I D+IR+VIG GG IR + E TGA ++IDD Sbjct: 537 HILNAMNEVLPASRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDD 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +GT++I + A + A I +IT EV K+YKG V +V+DFGAFV DGLVHI Sbjct: 597 NGTIRIFGENKAATKEAIRQIEAITAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SQ++ ERV SD + EG + V + D D+RG+IKL+MK V+Q Sbjct: 657 SQIADERVESVSDYLSEGQQINVLVQDVDNRGRIKLTMKGVEQ 699 >gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] Length = 722 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/697 (49%), Positives = 488/697 (70%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VA+SAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EANQLSEDV+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ K + ++ + E+ ++ ++ Sbjct: 241 ALFAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAEKLAAAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +LD + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILDGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+LSG R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella piezotolerans WP3] gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans WP3] Length = 701 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/689 (50%), Positives = 477/689 (69%), Gaps = 18/689 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E+ + LETG IARQ+D AVLA+ G+T VL TVV ++ + G+DFFPLTVNYQE+TY Sbjct: 8 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D E +P + Sbjct: 68 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +SM+ SAAL +SGLPF GP+ A+V Y NG+YVLNP + + S LDL V+GT+ AVLM Sbjct: 128 ISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAGTEGAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLE 241 VE EA L E+V+L +++GH + + VI AIS+L K A +P V D + +K++ Sbjct: 188 VESEAASLPEEVMLGGVVYGHEQQQVVINAISEL-KAEASKPAWDWTAPVQDQELVAKIK 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + E ++ K R Q+ +K +E+ + EI + ++ K Sbjct: 247 DLAEAGLTEAYQIEV----KQDRYTQVGVIKSAAKEALLAENPEADLREIDGLLGSLEKK 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ ++ R+DGR+ + VR ++ G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 303 VVRSRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VDS+ G N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY Sbjct: 363 KVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 423 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT GITA+QMD+KI GI+++IM +ALQQA R+HILN M + + Sbjct: 483 DEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQAIGS 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + PR+ + I P++IR+VIG GG IR + E+TG + ++DDGTVKIASS+ Sbjct: 543 HREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSNG- 601 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 EA +E IR I ++ EV +Y G+VV+++DFGAFV +DGLVHISQ++ ERVA Sbjct: 602 --EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 SD ++ G V VK+++ D +G+++LSM Sbjct: 660 NVSDYLEVGQEVKVKVMEVDRQGRVRLSM 688 >gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae R3021] gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae R3021] Length = 709 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846] Length = 709 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIIAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21] gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21] Length = 708 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAAQAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061] gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus nematophila ATCC 19061] Length = 712 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/687 (49%), Positives = 473/687 (68%), Gaps = 6/687 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGTESAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA L+ED +L A++FGH + + VIE I+ LA KE + ++ L + ++ Sbjct: 188 MVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQSLHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVSVFEDIQAK 301 ++ + L + I EK R Q++ +K+++ +E + EGE++ ++ Sbjct: 248 ELAESRLGDAYRITEKQERYAQVNIIKEEVSVVILAESAEKGVELEEGEVLDALSGLEKN 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L + R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 308 VVRGRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQ 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPY Sbjct: 368 VIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPY 427 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 428 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 487 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL+ M + + Sbjct: 488 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAIES 547 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 548 PRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 607 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 608 KARHAISRIEEITAEVEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 667 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+I+LSMK Sbjct: 668 DYLQVGQEVPVKVLEIDRQGRIRLSMK 694 >gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] Length = 722 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/683 (48%), Positives = 479/683 (70%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG IARQ+ AV+ +T V T V + +K+GQDFFPLTVNYQER+ Sbjct: 23 KFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERS 82 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I V+ + + +P Sbjct: 83 YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPD 142 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + S LDL V+GT+ AVL Sbjct: 143 IVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVAGTESAVL 202 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH++ + VI+ I++L K KE + ++ L ++++ Sbjct: 203 MVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQALRDKVA 262 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +Q+D +K+++ + +E + + E+ + +++ +VVR+ Sbjct: 263 ALAESRMGDAYRITEKQERYEQVDLIKEEVTAAIVAEDENVDVAEVADILANLEKQVVRS 322 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + VR + + +L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 323 RVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQ 382 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A FPYT+R+ Sbjct: 383 LMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHADFPYTVRV 442 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDH Sbjct: 443 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDH 502 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL M + ++ R Sbjct: 503 LGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINSPRDD 562 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 563 ISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKE 622 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 623 AIRRIEEITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 682 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+I+LSMK Sbjct: 683 MGQEVPVKVLEIDRQGRIRLSMK 705 >gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A++FGH + + VI+ I+ L K K + ++ L ++ Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNEALNARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ Sbjct: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAIEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDKFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R Sbjct: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690 >gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei ATCC 23344] gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei SAVP1] gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10229] gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10247] gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 23344] gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei SAVP1] gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 713 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/701 (48%), Positives = 485/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W + ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV +Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 6P18H1] gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 6P18H1] Length = 709 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E L++R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74] Length = 696 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/681 (49%), Positives = 471/681 (69%), Gaps = 14/681 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA G+IPG Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P +V+M+ AS Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVLMVE EA Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQM 247 LSED +L A++FGH + + VI+ I++L K K EP+ L ++ + Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAAL 234 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + L + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ + Sbjct: 235 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 294 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L Sbjct: 295 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 354 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G + + F+ HYNF P + GE +G+P RREIGHGRLA+R++ V+P +FPYT+R+VS Sbjct: 355 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVS 414 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDHLG Sbjct: 415 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 474 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + Sbjct: 475 DMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 534 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A Sbjct: 535 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 594 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G Sbjct: 595 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 654 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V VK+L+ D +G+I+LS+K Sbjct: 655 QEVPVKVLEVDRQGRIRLSIK 675 >gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum STM815] gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum STM815] Length = 712 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/702 (49%), Positives = 486/702 (69%), Gaps = 17/702 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 LFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+VM Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YIN +YVLNP + +GS LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K + + K Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEW--EWQAAPK 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----------NE 288 E +S++ ++ + + R KQ K K V Y +++ ++ Sbjct: 241 NEALISRV--NEIAYNELLSAYQTRDKQARSTKLKEV-YAATQAKLEEEAAAAGTVAADK 297 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 + +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA Sbjct: 298 ASVGNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 357 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT+ DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA Sbjct: 358 LVVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ Sbjct: 418 LAACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 477 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR Sbjct: 478 EGNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGR 537 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL +M+ +S +L + PR+ + I P++IR+VIG GG VIR + E+TG ++I Sbjct: 538 MHILGKMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDIS 597 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDG V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+H Sbjct: 598 DDGVVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLH 657 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 IS+++ ER+ +D +KEG V VK++ D++G+++LS K + Sbjct: 658 ISEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] Length = 715 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 487/697 (69%), Gaps = 15/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N QYVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QLSE+V+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289 +++ E + + +L + I +K R ++ ++ K ++ + ++ Sbjct: 243 ALIARVTE----IAQPELLAAYQIRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M++ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 S++ ERV +D +KEG V VK++ D++G+++LS Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695 >gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227] Length = 711 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] Length = 712 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/688 (50%), Positives = 483/688 (70%), Gaps = 6/688 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFPLTVNYQERT 67 +++ + LETG+IARQ+ +VL + G VL TVV + R + +DFFPLTV YQERT Sbjct: 17 VQFGSEEIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQTDENRDFFPLTVQYQERT 76 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGGY +RE RP+E EIL SR+IDR IRPLF + + NE QV+ V+ + +P Sbjct: 77 YAAGRIPGGYFKREGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSSTPDINPD 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +++ ASAAL LSGLPF+ P+ +V Y +GQY+LNP + E + S LDL V+ T+ AVL Sbjct: 137 IPALIGASAALALSGLPFKEPIAAVRVGYADGQYILNPSMKELETSDLDLVVAATEKAVL 196 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEEE 243 MVE +A +LSE+++L AI+FGH + + VI++I +LA +K I S D + +E+ Sbjct: 197 MVESQAAELSEEIMLKAILFGHQQMQGVIQSIKELAIEASKPAWDIKTLVSMD-AHVEQA 255 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + Q I L + IPEK++R ++D++++ ++ + E I V E + K+V Sbjct: 256 IIQSIDTSLTEAYQIPEKFMRKFKLDEIRENTMAQWLDEEKGITAKAIQFVLEKREEKIV 315 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L + R+DGRD + VR I+ + G L RTHGS+LF RG+TQA+VV TLGT D Q V Sbjct: 316 RSRILSGQSRIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTV 375 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 ++L G R FM+HYNF P + GE ++G+P RREIGHG LA+RA+ VLP + FPY L Sbjct: 376 EALDGEGRETFMLHYNFPPYSVGETGQIGSPKRREIGHGNLAKRALRAVLPSESDFPYVL 435 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMATVCG+S+ALMDAGVP+ K VAGIAMGL+K+G+ F +L+DI GDE Sbjct: 436 RVVSEITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIKEGEQFAVLTDILGDE 495 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT G+TA+QMD+KI GI+E I+ +AL QA+ GRLHIL+ M + L+E R Sbjct: 496 DHLGDMDFKVAGTVDGVTALQMDIKIEGITEEILKVALNQAREGRLHILSIMKEALAEPR 555 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +++ + PR+ + I P++IR++IG GG IR I E+TG ++I DDG V+I++S Sbjct: 556 IEVSPYAPRITTLKINPEKIRDLIGKGGATIRAITEETGTLIDISDDGMVRISTSDSQAC 615 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A E IR +T EV IY+G +VK+ DFGAFV+ RDGLVHISQ+S ERV + SDV Sbjct: 616 QNAIERIRKVTAEVEVGCIYEGAIVKLTDFGAFVNVLPGRDGLVHISQISKERVEQVSDV 675 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 + EG V VK+L+ D +G+I+L+MK ++ Sbjct: 676 LSEGQIVKVKVLEIDRQGRIRLTMKDIE 703 >gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357] Length = 696 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/681 (49%), Positives = 470/681 (69%), Gaps = 14/681 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA G+IPG Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P +V+M+ AS Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVLMVE EA Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQM 247 LSED +L A++FGH + + VI+ I++L K K EP+ L ++ + Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAAL 234 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + L + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ + Sbjct: 235 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 294 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L Sbjct: 295 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 354 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VS Sbjct: 355 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 414 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDHLG Sbjct: 415 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 474 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + Sbjct: 475 DMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 534 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A Sbjct: 535 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 594 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G Sbjct: 595 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 654 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V VK+L+ D +G+I+LS+K Sbjct: 655 QEVPVKVLEVDRQGRIRLSIK 675 >gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana ATCC 700345] gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC 700345] Length = 704 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 32/695 (4%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 ++ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 12 QYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVII V+ D E SP V+ Sbjct: 72 AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V Y+NG+Y+LNP + + S L+L V+GT+ AVLMV Sbjct: 132 SMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTESAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------EPIVIDSKDF 237 E EA+ L E+V+L A+++GH++ + VI+AI +L K E +V KD Sbjct: 192 ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQDETLVAKIKDL 251 Query: 238 SK--LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 ++ L E +K+D R Q+ +K +E+ N EI + Sbjct: 252 AEAGLTEAYQIEVKQD------------RYAQVGVVKNAAKEALLAENPDANTREIDGLL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++ KVVR ++ + R+DGR+ + VR ++ G+L RTHGSSLF RG+TQA+V TLG Sbjct: 300 GSLEKKVVRGRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +DS+ G N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P Sbjct: 360 TERDAQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPT 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY++RIVSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++ Sbjct: 420 AEEFPYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QA R+HIL+ M Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R + E PR+ + I P++IR+VIG GG IR + E+TG + +DDDGTVKI Sbjct: 540 DRAISGHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKI 599 Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 ASS+ EA +E IR I ++ EV +Y G+VV+++DFGAFV +DGLVHISQ+ Sbjct: 600 ASSNG---EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQI 656 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + ERVA SD ++ G V VK+++ D +G+++LSM Sbjct: 657 AEERVANVSDYLEVGQEVKVKVMEVDRQGRVRLSM 691 >gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parainfluenzae T3T1] Length = 712 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/685 (49%), Positives = 475/685 (69%), Gaps = 6/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LE G IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ SAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS--SSLAEI 603 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ SS A+ Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVDSSAAKN 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 AR I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD Sbjct: 607 VMAR--IEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ G V VK+++ D +G+I+L+MK Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMK 689 >gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143] gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii B253] gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143] Length = 721 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 198 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 251 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 252 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 311 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 312 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 371 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 372 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 431 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 432 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 491 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 492 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 551 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 552 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 611 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 612 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 671 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 672 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 700 >gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] Length = 700 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/687 (50%), Positives = 467/687 (67%), Gaps = 3/687 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V VE+E AGR ++LETGR+A+ +DGAVLA+YG+T+VLAT V + LK DF PLTVNY Sbjct: 2 VQAVEVEIAGRTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E+ Y+ GKIPGGY +RE P+E E L SR+IDR IRPL K + ETQVI +V+ D Sbjct: 62 LEKAYSAGKIPGGYFKREGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQS 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + VV + AASAAL +S +PF GP+ G ++ +NGQ+V+NP + E Q S L+L V+GT+ Sbjct: 122 MTSEVVGITAASAALAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSELELVVAGTE 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241 DA+ MVE AN LSE V LDA+ H+E K ++ I +L M + V+ + + LE Sbjct: 182 DAIQMVESGANGLSESVFLDALALAHSEIKKIVAKIVELQAMVGRTKRVVPVEPVGEELE 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ +++ +R + I K R ++ D + V E + + ++ V+ D++ Sbjct: 242 RQVRELVAGPIREAVLIANKNDRQERFDQIMADAVDKLGEEDPARSR-QVKEVYHDVEYH 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L+KKVR DGR + +R I+ + +L RTHGS+LF RG+TQ++ VVTLGT +DEQ Sbjct: 301 EVREMILEKKVRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+L G +FM+HYNF P + GE + +P RRE+GHG+LA RA+ VLP FPY Sbjct: 361 RIDALEGEYFRNFMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI KPVAGIAMGL+KDGD +ILSDI G Sbjct: 421 TIRIVSDILESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRVLILSDILG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKV GT GITA+QMD+KI GI+ ++M AL+QA+ GR+HIL +M + LS Sbjct: 481 LEDHLGDMDFKVTGTQEGITALQMDIKIEGITIDLMRQALEQARAGRIHILEKMQESLSS 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R L PR+ + I D+IR+VIG GGKVIRGI+ + G KVN+DD G V IAS A Sbjct: 541 PRDSLAPHAPRIYTLQIKTDKIRDVIGPGGKVIRGIIAECGVKVNVDDSGLVTIASVDEA 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +M+ +T+ V KIY G V K++DFGAFV DGLVHISQL+ RV + Sbjct: 601 SAQQAIDMVNRLTEEAIVGKIYMGTVRKIVDFGAFVEILPNVDGLVHISQLAEHRVQSVA 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D + EG+ V VK+L+ D +GKI+LS K Sbjct: 661 DELAEGEQVLVKVLEIDRQGKIRLSRK 687 >gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49] Length = 713 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/701 (48%), Positives = 489/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N QYVLNP ++ + S LDL V+ Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 181 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289 +++ E + + +L + I +K R ++ ++ K + ++ + ++ Sbjct: 241 ALIARVTE----LAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEAALAAGTVAADKA 296 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 297 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 357 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 417 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 477 GNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M+ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 537 HILGKMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 597 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 657 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 697 >gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus YJ016] gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016] Length = 725 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 18 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 77 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI V+ Sbjct: 78 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 137 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 138 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 197 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 198 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 257 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L E+++ + + L + I EK R +I ++ ++ + +E + EI ++F D Sbjct: 258 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 317 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 318 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 377 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 378 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 437 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 438 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 497 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 498 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 557 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 558 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 617 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 618 TEGA---AAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 674 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 675 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 708 >gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5 str. 8401] gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A] gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str. 8401] gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A] gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a str. 2457T] gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC 74-1112] gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EPECa14] gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68] gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180] gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 4343-70] gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671] gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2747-71] gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71] gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6] gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272] gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218] gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304] gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittEE] gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittEE] Length = 709 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L +++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae Rd KW20] gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20] Length = 709 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEXSEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei K96243] gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1710b] gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 668] gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1106a] gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei DM98] gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 14] gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 91] gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 9] gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei B7210] gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 7894] gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei NCTC 13177] gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 112] gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei BCC215] gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei K96243] gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710b] gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 668] gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106a] gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 713 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV +Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|254696416|ref|ZP_05158244.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2 str. 86/8/59] gi|260760788|ref|ZP_05873131.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260671220|gb|EEX58041.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 528 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/528 (62%), Positives = 413/528 (78%), Gaps = 4/528 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV + K GQDFFPLT Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF YKN+TQV+I V+QH Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE + LDL V+ Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +AVLMVE EA +L EDV+L A++FGH +PVI+AI KLA++ AKEP +D S+ Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296 LE ++ +++ DLR + I EK R +D K K +F E + + + ++F+ Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +QAK+VR +LD R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ +D+L+GT + FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QA Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQA 528 >gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Alteromonadales bacterium TW-7] gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Alteromonadales bacterium TW-7] Length = 708 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/688 (50%), Positives = 473/688 (68%), Gaps = 9/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E + + LETG IARQ+DGAVLA+ G+T VL TVV R + GQDFFPLTVNYQER Sbjct: 7 EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF + NE QVI V+ + E P Sbjct: 67 YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ SAAL +SG+PF GP+ A+V YI G+YVLNP L E ++ LDL V+GT +AVL Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAGTDNAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243 MVE EA+ L+EDV+L A+++GH + + +I AI++ K A +P K+ S LEE+ Sbjct: 187 MVESEADVLAEDVMLGAVVYGHEQSQSIINAINEF-KAEAGKPTWDWTAPEKNVS-LEEK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300 ++++ + + + I +K R + + K ++ SSE + + ++ E+ VF ++ Sbjct: 245 VAELAADKVGEAYRITDKVARKEALGVAKDAVIEALSSELAEGETLDKQEVGKVFGSLEK 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR + + R+DGR+ + +R + G+L RTHGS++F RG+TQA+V TLGT D Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+GT +N FM++YNF P GE +G+P RREIGHG LA+R I V+P FP Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTDFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI VAGIAMGLVK+ + F++LSDI Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVLSDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK RLHIL M + +S Sbjct: 485 GDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAIS 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +L F PR+ M IP +I VIG GG IR + E+TG + I DDGT+KIA++ Sbjct: 545 APSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I +T EV IY+G+VV+++DFGAFV+ +DGLVHISQ+STERV Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + EG V VK+L+ D +G+++LS+K Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692 >gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC 796-83] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 474/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R++ V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius str. 'morsitans'] gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 705 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 470/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ LETG +ARQ+ AV+A+ +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE VI V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP E S LDL V+GTQ+AVL Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVAGTQNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A+++GH++ + VI+ I++L K ++D + L+ ++ Sbjct: 188 MVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNAGLQARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L S I EK R +D +K +V + + + + GEI + ++ VVR+ Sbjct: 248 ELAESRLGDSYRITEKQERYAAVDAIKADVVEALTGQDETLDVGEIKDILGALEKSVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + +S R Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMERAISSPRGN 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVK+A++ + Sbjct: 548 ISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKVAATDGDKARH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAF G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFFAIGGGKEGLVHISQIADKRVEKVADYLE 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 LGQEVPVKVLEVDRQGRVRLSIK 690 >gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E110019] gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E110019] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. MG1655] gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS] gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1] gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BW2952] gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43] gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 4_1_40B] gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50] gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 196-1] gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736] gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. MG1655] gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS] gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1] gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43] gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BW2952] gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1] gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 196-1] gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide phosphorylase and degradosome [Escherichia coli BL21(DE3)] gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1] gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520] gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489] gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007] gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2362-75] gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2362-75] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SMS-3-5] gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11] gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 3_2_53FAA] gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli FVEC1412] gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FVEC1302] gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101] gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206] gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299] gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli SMS-3-5] gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11] gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82] gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 3_2_53FAA] gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli FVEC1412] gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli IHE3034] gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FVEC1302] gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101] gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146] gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli WV_060327] gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli RN587/1] gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252] gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263] gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863] gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TW10509] gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli STEC_7v] gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206] gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299] Length = 711 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC BAA-895] gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895] Length = 722 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 19 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 78 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 79 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 138 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 198 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A++FGH + + VI+ I+ L K K + ++ L ++ Sbjct: 199 MVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNEALNARVA 258 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ Sbjct: 259 ALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAIEKNVVRS 318 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 319 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 378 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 379 LMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDKFPYTVRV 438 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 439 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 498 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R Sbjct: 499 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 558 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 559 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 618 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 619 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 678 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 679 MGQEVPVKVLEVDRQGRVRLSIK 701 >gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] Length = 709 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I+++IG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GL+HISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82] Length = 711 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli E24377A] gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638] gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC869] gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC508] gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22] gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171] gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1012] gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. EC4024] gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. TW14359] gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9] gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. FRIK2000] gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. FRIK966] gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088] gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W] gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E24377A] gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638] gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC869] gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC508] gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22] gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171] gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1012] gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. TW14359] gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088] gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W] gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W] gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC 9905] gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli EC4100B] gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. G5101] gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H- str. 493-89] gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H- str. H 2687] gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. USDA 5905] gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. LSU-61] gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E128010] gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G] gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11] gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482] gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120] gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167] gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. 1125] gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. 1044] Length = 711 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae RdAW] gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae RdAW] Length = 709 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] Length = 734 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVLVKVLEVDRQGRIRLSIK 713 >gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] Length = 707 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/694 (49%), Positives = 472/694 (68%), Gaps = 10/694 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQ FFPLT Sbjct: 1 MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL V+ Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GTQ AVLMVE EA LSED +L A++FGH + + VI+ I+ L K +P +++ Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 + L ++ + + L + I EK R QI+ +K +V +E S + GEI + Sbjct: 241 E----LHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQALQAEDESLDAGEISDI 296 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 I+ VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TL Sbjct: 297 LGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + ++P Sbjct: 357 GTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMP 416 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G+ FI Sbjct: 417 KPEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFI 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + +S R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVK Sbjct: 537 MEQAISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IA++ + + A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ Sbjct: 597 IAATDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K +D ++ G V VK+L+ D +G+++LS+K Sbjct: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter calcoaceticus PHEA-2] Length = 695 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 1 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+YVLNP ++ + LDL V+ Sbjct: 120 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E I Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWIAPTKNE 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 240 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 540 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 660 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 694 >gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp. SKA14] gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp. SKA14] Length = 702 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/696 (51%), Positives = 481/696 (69%), Gaps = 12/696 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPDVD 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E S L+L V+GT +A Sbjct: 125 GDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTSNA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239 VLMVE EA LSE+V+L A+ FGH E + VI AI++L +P ++ S Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALISA 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297 L+E + + E +V +K R I +KK +V + ++ WN E+ F + Sbjct: 245 LKEAIGPRLGEAFQVR----DKLQRRDAISAIKKDVVETLAGRVAAEGWNPAELSKEFGE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + +R +LD KVR+DGR +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+++G + +F+ HYNF P + GE RM P RREIGHGRLA+R + V+P Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LS Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GI+A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS Sbjct: 541 GLTAPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S++RV Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K DV+KEGD V VK+L+ D +G+I+LSMK V++ Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEG 696 >gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus CMCP6] gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6] gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] Length = 708 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L E+++ + + L + I EK R +I ++ ++ + +E + EI ++F D Sbjct: 241 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227] gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227] Length = 734 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 474/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R++ V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86] Length = 711 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+++LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CFT073] gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89] gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073] gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89] Length = 740 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 37 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 96 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 97 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 156 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 157 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 216 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 217 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 270 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 271 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 330 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 331 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 390 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 391 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 450 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 451 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 510 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 511 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 570 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 571 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 630 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 631 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 690 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 691 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719 >gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 14 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 73 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 74 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 134 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 193 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 194 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 247 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 248 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 307 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 308 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 367 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 368 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 427 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 428 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 487 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 488 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 547 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 548 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 607 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 608 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 667 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 668 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 696 >gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT 5369-93] gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT 5369-93] Length = 708 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + NE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI+AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I + ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + E V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTESQEVQVKVLEIDRQGRVRLSMK 691 >gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354] gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354] Length = 711 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDDTLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 714 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 12 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 71 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 72 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 131 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 132 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 191 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 192 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 251 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 252 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 311 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 312 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 371 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 372 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 431 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 432 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 491 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 492 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 551 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I+++IG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 552 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 611 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GL+HISQ++ ERV K SD ++ Sbjct: 612 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 671 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 672 VGQEVNVKVVEIDRQGRIRLTMK 694 >gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae NT127] gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae NT127] Length = 709 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEAI + K K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK +R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEGISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9] gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9] Length = 740 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 37 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 96 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 97 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 156 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 157 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 216 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 217 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 270 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 271 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 330 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 331 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 390 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 391 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 450 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 451 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 510 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 511 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 570 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 571 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 630 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 631 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 690 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 691 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719 >gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas naphthalenivorans CJ2] gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2] Length = 703 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/703 (49%), Positives = 484/703 (68%), Gaps = 24/703 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + +ETG +ARQ+ GAVL TVVLATVV K GQDFFPLT Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++A+SAAL +SG+PF GP+ A+V YING+YVLNP + Q S +DL V+ Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L AI+FGH + I AI +L + K V D K +K Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKP--VWDWKAPAK 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN------EG---- 289 E +++++ EK V QI + K+ ++ + + ++W EG Sbjct: 241 DEVLIAKVV-------ALAEEKLVAAYQIRN--KQARTHATRQVTTWTKMGLKAEGVEFD 291 Query: 290 --EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + DI+AK+VR+ +L R+DGRD+ TVR I + +L RTHGS+LF RG+TQ Sbjct: 292 GVAVEGMLFDIEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQ 351 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 A+VV TLGT D Q +D+LSG + FM+HYN P ATGE R+G+P RREIGHGRLA+R Sbjct: 352 ALVVTTLGTERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKR 411 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+ Sbjct: 412 ALIAVLPSKEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLI 471 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+ + F +L+DI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QAK Sbjct: 472 KEDNRFAVLTDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEA 531 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R+HIL +M + + ++ ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI Sbjct: 532 RMHILGKMQEAMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINI 591 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 ++DGT+ IAS+ A+ + A+ I IT E+ K+Y+G + K++DFGA V+ +DGL+ Sbjct: 592 EEDGTITIASNDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLL 651 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 HISQ++ ERV K +D + EG + VK+L+ D++G++KLSMK + Sbjct: 652 HISQIAHERVEKVTDYLSEGQIIKVKVLETDEKGRVKLSMKAL 694 >gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 717 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/702 (50%), Positives = 481/702 (68%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVSKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR +RPLF + Y NE Q+II+V+ Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GPV A+V YINGQYVLNP + + S LDL V+ Sbjct: 121 NPEIDPDIAAMIGASAALSVSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI +L + K I + Sbjct: 181 GTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHELVRDGGKPEIEWAPAAKNE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293 L ++ + LR + +K R ++ +++ +E +S + ++ + Sbjct: 241 ALISRVAHFGEAKLRDAYQTKDKQARTAKLKTATSEVMEALKAEAASIAGVAPDSADVNN 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT DEQ +D+L G + FM+HYN P ATGE R+G P RREIGHGRLA+RA+ L Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAAL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+KDG F Sbjct: 421 PPVEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QAK GRLHIL+ Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTAKGITALQMDIKIQGITKEIMQVALAQAKEGRLHILD 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + + +L F PR+ + I P++IR+VIG GG VIR + E+TG +++I D+G V Sbjct: 541 KMQQAVPIGHTELSNFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS + A+ I +T EV KIY+G V+K++DFGA V +DGL+HISQ++ Sbjct: 601 TIASVDASAGLEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ERV +D +KEG V VK+L+ DDRG++KLSMK G Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAASEEG 702 >gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii ATCC 35469] gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii ATCC 35469] Length = 734 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae ATCC 25976] gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae ATCC 25976] Length = 707 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/695 (48%), Positives = 481/695 (69%), Gaps = 9/695 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAVGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A++ +IN Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I EK R +QID +K +++ +++ + +EG IV + +++ VVR Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDVIKADVIAQLTAQDETISEGAIVDIITALESSVVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RILAGEPRIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + + Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMGQAIP-APAD 545 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG VIR + E+TG ++IDDDGTVKIA++ + A Sbjct: 546 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT---DNNA 602 Query: 606 AREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 A+ ++ I D+ EVN IYKG+V++V+DFGAFV G ++GLVHISQ++ ERV + +D Sbjct: 603 AKTVMARIEDIVAEVEVNAIYKGKVIRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 662 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 + G V VK+++ D + +I+L+MK ++ + P Sbjct: 663 YLNVGQEVAVKVVEIDRQNRIRLTMKDINNDAATP 697 >gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UMN026] gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 198-1] gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 69-1] gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280] gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UMN026] gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042] gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 198-1] gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 69-1] gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280] Length = 734 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis z3032] gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis z3032] Length = 711 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/696 (48%), Positives = 476/696 (68%), Gaps = 13/696 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLT+NYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVAGTESAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+ I+ L K K +P + L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298 + + + L + I +K R QID +K +++ +E + + +E E+ + I Sbjct: 244 ARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAI 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT Sbjct: 304 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P + Sbjct: 364 DAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADR 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G++F++LSD Sbjct: 424 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+ GITA+QMD+KI GI++ IM +AL QAK RLHIL M + Sbjct: 484 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++ R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 603 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV Sbjct: 604 DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 K +D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699 >gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15] Length = 734 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536] gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC O1] gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88] gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a] gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972] gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 200-1] gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 45-1] gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 185-1] gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718] gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536] gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC O1] gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88] gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a] gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972] gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 185-1] gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 200-1] gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 45-1] gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU 83972] gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1 str. NRG 857C] gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 110-3] gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 153-1] gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 16-3] gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 57-2] gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 60-1] gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718] Length = 734 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter salexigens DSM 3043] gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter salexigens DSM 3043] Length = 707 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/690 (49%), Positives = 465/690 (67%), Gaps = 12/690 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETGRIARQ+ GAV+ T +TVVL TVV + + Q FFPL+V+YQE+TY Sbjct: 8 FQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE RPTE E L SR+IDR IRPLF + NE QV+ V+ D P + Sbjct: 68 AVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +M+ SAAL +SG+PF GP+ A+V + + Y LNP ++E + S L++ V+GT+ AVL Sbjct: 128 AAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVAGTEKAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA +L ED +L A++FGH E + I AI LA K +P D+ S L Sbjct: 188 MVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDTTLKSALA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFEDIQA 300 E + E R++ +K R + LK + + + E S + ++ F ++ Sbjct: 248 AEFEAKVGEAYRIT----DKMARQDALSALKDEALERLAGEESGQYAADDVKGAFASLEK 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VVR+ ++ + R+DGRD TVR +S +VG L +THGS++F RG+TQA+VV TLGT D Sbjct: 304 RVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTLRDA 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q ++SL G +++ F++HYNF P + GE MG P RREIGHGRLARR + +LP FP Sbjct: 364 QLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPSEEDFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVKD D F +L+DI Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGFAVLTDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM ALQQA RLHIL +M+ V++ Sbjct: 484 GDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQAHEARLHILEQMNTVIA 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +SR ++ + P + + I PD+IR+VIG GG IR I + TGA +++DDDGTV+I + Sbjct: 544 QSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGASIDLDDDGTVRIYAEDK 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA + + +IT PE+ K+Y+G V ++ DFGAFV F DGLVHISQ+ ERV Sbjct: 604 TAAKAAIDTVLAITAEPEIGKLYRGTVARITDFGAFVTFMPGTDGLVHISQIVPERVNDV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D + EG V VK+LD D+R ++KLS+K V Sbjct: 664 RDYLSEGQEVIVKVLDIDNRNRVKLSIKEV 693 >gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia psychrerythraea 34H] gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia psychrerythraea 34H] Length = 705 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/695 (49%), Positives = 477/695 (68%), Gaps = 12/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + T + + + LETG IARQ+ AV+A+ +T VL +VV + K GQDFFPLT Sbjct: 1 MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER YA GKIPG + +RE RP+E E LI+R+IDR IRPLF + + NE QVII V+ Sbjct: 61 VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E +P ++S++ SAAL +SGLPF GPV A+V Y +GQY+LNP E S LDL VS Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 GT AVLMVE EA+ LSE+V+L A+++GH + + + AI + K + S D+ Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEF-----KAEVNTPSWDWVA 235 Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 ++L +++++ + + + I EK VR ++I +++ ++ +E++ + E Sbjct: 236 PVKNAELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLAENADVDVQEAKD 295 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +F D++ VVR + D R+DGRD E++R + G+L RTHGS++F RG+TQA+V T Sbjct: 296 LFHDLEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTAT 355 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT+ D Q +D+L G + + FM+HYNF P GE +G+P RREIGHGRLA+R + V+ Sbjct: 356 LGTQRDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVM 415 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G+ F Sbjct: 416 PSLEEFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKF 475 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ++LSDI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QAK R HIL+ Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILS 535 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + + R + EF PR+ M + D+IR++IG GG IR + E+TG + I+DDGTV Sbjct: 536 VMDEAIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTV 595 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 KIA++S + E A I+++T EV +Y G+VV+++DFGAFV+ +DGLVHISQ+S Sbjct: 596 KIAATSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQIS 655 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ERV S+V+ EG V VK+L+ D +G+++LS+K Sbjct: 656 EERVNNVSEVLTEGQEVKVKVLEVDRQGRVRLSIK 690 >gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. W3110] gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. DH10B] gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str. REL606] gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 187-1] gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 175-1] gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 146-1] gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736] gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr. MG1655] gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K12 substr. W3110] gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. DH10B] gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str. REL606] gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BL21(DE3)] gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 175-1] gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 187-1] gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 146-1] gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC H10407] gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736] Length = 734 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 EDL933] gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. Sakai] gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046] gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11] gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989] gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39] gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O103:H2 str. 12009] gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. CB9615] gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185] gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 107-1] gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 119-7] gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 84-1] gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 182-1] gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 21-1] gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 124-1] gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 78-1] gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271] gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591] gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity [Escherichia coli O157:H7 str. EDL933] gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai] gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046] gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli] gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli] gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli] gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli] gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli] gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11] gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989] gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39] gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O103:H2 str. 12009] gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. CB9615] gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185] gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 84-1] gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 182-1] gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 21-1] gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 119-7] gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 107-1] gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 124-1] gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 78-1] gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 85-1] gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 117-3] gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271] gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591] Length = 734 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/693 (48%), Positives = 474/693 (68%), Gaps = 10/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + ++E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696 >gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii TW07627] gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii TW07627] Length = 711 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 KVVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMNQEVPVKVLEVDRQGRIRLSIK 690 >gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] Length = 714 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/696 (48%), Positives = 472/696 (67%), Gaps = 10/696 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV ++ K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE Q+I V+ + + P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSVNPQVHPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GTQ AVL Sbjct: 128 IVALIGASAALSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLDLVVAGTQGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+ I+ L K +P ++ L+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIDQINALVAEAGKPRWDWKPEAVNES----LQ 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I EK R Q+ +K + + +E +S ++ EI + ++ Sbjct: 244 TRIAALAESRLSEAYQITEKQERYAQVGVIKSETTAALLAEDASLDDNEIGDLLHALEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRILSGAPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGEKTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKADAFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G++F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D ++ G V VK+L+ D +G+++LS+K + +P Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEP 699 >gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/696 (48%), Positives = 476/696 (68%), Gaps = 13/696 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLT+NYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+ I+ L K K +P + L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298 + + + L + I +K R QID +K +++ +E + + +E E+ + I Sbjct: 244 ARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAI 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT Sbjct: 304 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P + Sbjct: 364 DAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADR 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G++F++LSD Sbjct: 424 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+ GITA+QMD+KI GI++ IM +AL QAK RLHIL M + Sbjct: 484 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++ R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 603 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV Sbjct: 604 DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 K +D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699 >gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 721 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/693 (48%), Positives = 474/693 (68%), Gaps = 10/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + ++E + + E+ + I+ Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAIEKN 313 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 494 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 D ++ G V VK+L+ D +G+++LS+K + T Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 706 >gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605] gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605] Length = 734 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+++LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRVRLSIK 713 >gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] Length = 715 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 486/697 (69%), Gaps = 15/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N QYVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL E+V+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289 +++ E + + +L + I +K R ++ ++ K ++ + ++ Sbjct: 243 ALIARVTE----IAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M++ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 S++ ERV +D +KEG V VK++ D++G+++LS Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695 >gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a str. 2457T] gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a str. 301] gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O26:H11 str. 11368] gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O111:H- str. 11128] gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 145-7] gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T] gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301] gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O26:H11 str. 11368] gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O111:H- str. 11128] gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017] gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 145-7] Length = 734 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] Length = 713 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 V----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV +Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] Length = 713 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 486/697 (69%), Gaps = 15/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N QYVLNP ++ + S LDL V+ Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL E+V+L A++FGH + + I+AI +L + K +P D Sbjct: 181 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289 +++ E + + +L + I +K R ++ ++ K ++ + ++ Sbjct: 241 ALIARVTE----IAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA 296 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 297 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 357 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 417 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 477 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M++ ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 537 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS+S + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 597 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 S++ ERV +D +KEG V VK++ D++G+++LS Sbjct: 657 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693 >gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1] gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1] Length = 734 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica PHL213] gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica PHL213] Length = 716 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/688 (48%), Positives = 476/688 (69%), Gaps = 2/688 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL VSGT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK VR +QID +K ++++ ++E + +EG I+ + +++++VR+ Sbjct: 247 ALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQIVRS 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + +L RTHGS+LF RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+T ++IDDDGTVKIA++ +A Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN+IY G+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLT 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 G V VK+++ D +G+I+L+MK ++ Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMKDINNT 694 >gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC 8739] gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC 8739] Length = 711 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 697 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+YVLNP ++ + LDL V+ Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPTKNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297 L E++ + + + I K R +D L + V+ F E+ E+ +FED Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] Length = 734 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 472/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNEA----LN 266 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 267 ARVAALAESRLSDAYRITDKQERYAQVDAIKSETIDALLAEDETLDANELGEILHAIEKN 326 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 327 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 386 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 387 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 446 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 447 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 506 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 507 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 566 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 567 PRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 626 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 627 KAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 686 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 687 DYLQMGQEVPVKVLEVDRQGRVRLSIK 713 >gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] Length = 701 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/705 (49%), Positives = 484/705 (68%), Gaps = 19/705 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + +ETG IARQ+ GAV + GETVVL V ++ +K GQDFFPLT Sbjct: 1 MFNKHVKSFQYGQHTVTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG+YVLNP + + LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236 GT AVLMVE EA L EDV+L A+++GHNE + VI AI++LA A P V D K Sbjct: 181 GTAQAVLMVESEAQILPEDVMLGAVVYGHNEMQAVIRAINELAD--AVNPEVWDWKAPET 238 Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEI 291 +K++E Q + E + I +K R ++D+ + + +E + + +I Sbjct: 239 DAALVAKVQEIAGQTVAEAFK----IRQKQARTAKLDEAWAAVEAALITEDTDTLAANQI 294 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +F+ ++A VVR+ +L + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V Sbjct: 295 KGIFKHLEANVVRSQILAGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT+ DEQ +D+LSG + FM+HYNF P +TGE RMGAP RREIGHGRLA+RA+ Sbjct: 355 ATLGTQRDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLG 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ Sbjct: 415 VLPSPEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHI Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M ++ + +L + PR+ M I D+IR+VIG GG+ IR + +TG ++NI+DDG Sbjct: 535 LEQMKAAVAGPQ-ELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649 T+ IA+ ++ +EAAR+ I IT EV ++Y G V+K++D GA V +DGLVHI Sbjct: 594 TITIAAVNVEAVEAARKRIEEITAEVEVGQVYNGVVIKILDNNVGAIVSVMPGKDGLVHI 653 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQN 693 SQ++ ERV +D ++ G V VK L+ DDRG+++LSMK ++DQ Sbjct: 654 SQIAHERVKDVNDYLRVGQNVRVKALEVDDRGRVRLSMKALLDQT 698 >gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC 3083-94] gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC 3083-94] Length = 711 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + ++TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 115-1] gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 115-1] Length = 734 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666] gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666] Length = 707 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/694 (48%), Positives = 484/694 (69%), Gaps = 6/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + +ETG +ARQ+ GAV+ TVVLATVV K GQDFFPLT Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++A+SAAL +SG+PF GP+ A+V Y++GQYVLNP + + S +DL V+ Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L A++FGH + I AI +L + K V D + +K Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKP--VWDWQAPAK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++++ L+ + I K R + +++ ++ +++ + + Sbjct: 241 DEPLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAALKADGVAFDGVTVEGMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+LSG + FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA Sbjct: 541 EAMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A+ + A+ I IT E+ K+Y+G + K++DFGA V+ +DGL+HISQ++ ER Sbjct: 601 SNDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K +D + EG V VK+L+ D++G++KLSMK + Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKAL 694 >gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] Length = 698 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/692 (49%), Positives = 478/692 (69%), Gaps = 8/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + + LET RIARQ+ GAVL T GE VLATVV + K GQDFFPLTVNYQE Sbjct: 8 TKTFQFGNQEVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFPLTVNYQE 67 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+++RE+RP+E E L SR+IDR IRPLF + Y NE QV++ V+ D E+ Sbjct: 68 KYYAAGKIPGGFIKRENRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVVSADKEND 127 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQGSL-DLFVSGTQ 182 P + +M+ ASAAL +SG+PF+GP+ A+V Y NG YVLNP + + SL D+ V+GT+ Sbjct: 128 PDIAAMIGASAALAISGIPFDGPIGAARVGYDAENG-YVLNPTYAQLETSLLDMVVAGTE 186 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241 DAVLMVE EA +LSED +L ++F H E + + A+ + A E + + ++L Sbjct: 187 DAVLMVESEAKELSEDQMLGGVLFAHQEFQVAVNAVKEFAAAVGTERWDWQAPEIDTELY 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQID--DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +M ++ DL + I +K R +D + K K +E S N E+ +F+ +Q Sbjct: 247 GKMKEVAFADLTAAYQIKDKLARQDAVDAANTKLKEALLVDTEEES-NAEELSKLFKKLQ 305 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR +L + R+DGRD++TVRD++ Q +L+ THGS+LF RG+TQ+I VTLG+ D Sbjct: 306 KEVVRERILSNEPRIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRD 365 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q V+ L Q+++F+ HYNF P + GE RMGAP RRE+GHGRLARR + ++P F Sbjct: 366 AQVVEFLHEVQKDNFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMPSLEDF 425 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VC +SLALMDAGVPI PVAGIAMGLVK+G+ F +L+DI Sbjct: 426 PYTVRVVSEITESNGSSSMASVCSASLALMDAGVPIKAPVAGIAMGLVKEGERFSVLTDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QA R+ IL +M++V+ Sbjct: 486 LGDEDHLGDMDFKVAGSEAGITALQMDIKIQGITEQIMEIALEQALDARMTILKQMNEVI 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 +E R ++ P + IP D+I IG GG IRGI E+TGA V+I ++G + I + + Sbjct: 546 AEPRSEMPSNAPTYLTVKIPADKIAEAIGKGGATIRGITEETGADVDISEEGVISIFALT 605 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E A+ M ++T EV IY+G+V K++DFGAFV+ +DGLVHISQ+S ERV Sbjct: 606 KDAAEKAKGMFEAVTAEAEVGTIYEGKVNKIVDFGAFVNILPGKDGLVHISQISDERVEN 665 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +D ++EG + VK+LD D++G+IKL+MK ++ Sbjct: 666 VADYIQEGAVIKVKVLDVDNKGRIKLTMKGIE 697 >gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] Length = 713 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/701 (48%), Positives = 483/701 (68%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV +Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS195] gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS183] gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica BA175] gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS195] gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS183] gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica BA175] gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS678] Length = 700 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YI+G+YVLNP + + S L+L V+GT AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245 E EA L E+V+L ++++GH++ + VI+AI++ K A +P ++D + L ++ Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I K R Q+ +K + + S + E+ ++ ++ KVVR Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q +DS Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P A+FPY++R+ Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + R Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR+ ++ I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ EA Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA SD Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ V VK+++ D +G+++LS+K Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689 >gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12D] gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D] Length = 724 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/697 (49%), Positives = 489/697 (70%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W G +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI +L + K + ++ Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 242 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ K + + + + E+ ++ ++ Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RRE+GHGRLA+RA+ PVLP+ + Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+ VAG+AMGL+ + + F +L+D Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L E PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699 >gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (CAP87K) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 709 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/683 (48%), Positives = 475/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G++PG + RRE RP E E L++R+IDR +RPLF + NE Q++ V+ + + +P Sbjct: 68 YAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASA L LSG+PF GP+ A+V YIN QYVLNP DE + S LDL VSGT AVL Sbjct: 128 IVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VI+ I+ LA KE + ++ L + ++ Sbjct: 188 MVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQALHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + ++ L + I EK R Q+D +K+++ + + + E EI + ++ KVVR+ Sbjct: 248 GLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQDEALEEAEIHEILGSLEKKVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL+ M + ++ R Sbjct: 488 LGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAINSPRND 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AISRIEEITAEIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 VGQEVSVKVLEIDRQGRVRLSIK 690 >gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda EIB202] gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda EIB202] gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda FL6-60] Length = 707 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/683 (49%), Positives = 474/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ T +T V TVV + ++GQDFFPLTVNYQER Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +DE Q LDL V+GT +AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVAGTDNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH++ + VIE I LA K + + + L+ ++ Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEVNVALQHRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 +M + L + I EK R ++D++K+ ++ +E + + GEI + ++ VVR Sbjct: 248 EMAEARLGEAYHITEKQARYAKVDEIKESVIVDLLAEDDALDAGEISDILGALEKAVVRG 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P FPYT+R+ Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + ++ R Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVAVKVLEVDRQGRVRLSIK 690 >gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS185] gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS185] Length = 700 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YI+G+YVLNP + + S L+L V+GT AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245 E EA L E+V+L ++++GH++ + VI+AI++ K A +P ++D + L ++ Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I K R Q+ +K + + S + E+ ++ ++ KVVR Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q +DS Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P A+FPY++R+ Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + R Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR+ ++ I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ EA Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA SD Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ V VK+++ D +G+++LS+K Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689 >gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 86-028NP] gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittAA] gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 86-028NP] gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittAA] Length = 709 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/683 (49%), Positives = 471/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIEA+ + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +E +IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISESKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O127:H6 str. E2348/69] gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O127:H6 str. E2348/69] Length = 711 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] Length = 713 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/701 (48%), Positives = 483/701 (68%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP ++ + S LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289 L ++++ + +L + I +K R ++ ++ + E + ++ Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + ++ D++AK+VR +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKV GT G+TA+QMD+KI GI++ IM +AL QAK GR+ Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVVGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS++ + A++ I +IT EV +Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699 >gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS155] gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS155] Length = 703 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + G+DFFPLTVNYQE+TYA Sbjct: 12 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 72 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YI+G+YVLNP + + S L+L V+GT AVLMV Sbjct: 132 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245 E EA L E+V+L ++++GH++ + VI+AI++ K A +P ++D + L ++ Sbjct: 192 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 249 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I K R Q+ +K + + S + E+ ++ ++ KVVR Sbjct: 250 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 309 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q +DS Sbjct: 310 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 369 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P A+FPY++R+ Sbjct: 370 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 429 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDH Sbjct: 430 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 489 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + R Sbjct: 490 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 549 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR+ ++ I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ EA Sbjct: 550 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 606 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA SD Sbjct: 607 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 666 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ V VK+++ D +G+++LS+K Sbjct: 667 HLELNQEVAVKVMEVDRQGRVRLSIK 692 >gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] Length = 723 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/704 (48%), Positives = 485/704 (68%), Gaps = 10/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGQHKVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+ Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SG+PF GPV A+V Y +GQY+LNP + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EANQLSEDV+L A+++GH + + I AI +L + K P + Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVREGGKPEWDWAPAAKNE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ E +++E ++ +K R +++ ++ + + + ++ E+ ++ Sbjct: 243 PLIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVSANVAAALAEAGVEADKVEVGNI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 D++AK+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TL Sbjct: 299 MFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DEQ +D+L+G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F Sbjct: 419 KEDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL+ Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSN 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + +R +L PR+ M I PD+IR VIG GG I+ + ++TG ++I +DGT+ Sbjct: 539 MQEAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS+S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS++ Sbjct: 599 IASTSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ERV D +KEG V VKL+ D++G+++LS+K G I Sbjct: 659 ERVKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGSI 702 >gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] Length = 722 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/697 (49%), Positives = 489/697 (70%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W G +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI +L + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ K + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RRE+GHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+ VAG+AMGL+ + + F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L E PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1617] gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1617] Length = 711 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLLMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15] Length = 727 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/692 (50%), Positives = 473/692 (68%), Gaps = 12/692 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ + LETGRIARQ+ G+VL T + VL TVV + K GQ FFPLTVNY E+TY Sbjct: 31 FELGGKTVTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEKTY 90 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF + NE QVI VM P + Sbjct: 91 AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSKNQDPDI 150 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186 +M+AASAAL +SG+PF+GP+ ++V Y N + Y LNP +E Q SL D+ V+GT+DAVL Sbjct: 151 AAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLLDMVVAGTEDAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA L+ED +L +++GH E + + AI + A K +P +++ + ++ Sbjct: 211 MVESEAKGLTEDQMLGGVLYGHQEMQTAVTAIKEFAAEIGKPRWDWQPAAENTELLNAIK 270 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFEDIQA 300 + + I+E + I +K R +++ ++K V + E +E E+ F I+ Sbjct: 271 ADFAGAIEE----AYGIRDKMARYERLGEVKAAAVEKLAGEEEGQPSEDEVKKYFGKIEK 326 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVR ++D K R+DGRD++TVR I +VG+L HGS+LF RG+TQAIV TLGT D Sbjct: 327 SVVRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDV 386 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G +++ F+ HYNF P + GE R+G P RRE+GHGRLA+R + V+P +FP Sbjct: 387 QIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVLAVMPTLEEFP 446 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+GD F +L+DI Sbjct: 447 YAIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTDIL 506 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QA RLHIL EM+KV+S Sbjct: 507 GDEDHLGDMDFKVAGTQEGVTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKVIS 566 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R +L P + + I P++IR+VIG GG VIR I ++TGA +++DDDG VKI + + Sbjct: 567 EPRAELSARAPSITTIKINPEKIRDVIGKGGSVIRAICDETGASIDLDDDGNVKIYADNQ 626 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +AA ++ IT EV IYKG+V +++DFGAFV+ +DGLVHISQ+S R+ Sbjct: 627 EAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISDRRIENV 686 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +D + EG V VK+LD D+RG++KLSMK + + Sbjct: 687 TDELSEGQEVLVKVLDVDNRGRVKLSMKEIKE 718 >gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC3088] gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC3088] Length = 746 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/684 (50%), Positives = 471/684 (68%), Gaps = 6/684 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ G+ + LETGRIARQ+ GAVL T T VL TVV +S K GQDFFPL+V+YQE++Y Sbjct: 8 FQYGGQTVTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSVHYQEKSY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF+ + NE QV+ VM D P + Sbjct: 68 AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAADDHIDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQGS-LDLFVSGTQDAV 185 +M+ SAAL +SG+PF GP+ A+V + N Q Y+LNP + +GS LD+ V+GT+DAV Sbjct: 128 PAMIGTSAALAISGVPFNGPIGAARVGF-NAQEGYLLNPDYNALKGSDLDMVVAGTKDAV 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244 LMVE EA +L+ED +L A++F H E + VI AI++L K + ++ L E + Sbjct: 187 LMVESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAEAGKPKWDWQAPAVNEALVEAV 246 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 DL + I EK R ++D+++ V + E + ++ VF+ ++ +VR Sbjct: 247 RAQAGADLGAAYRITEKAERYARVDEIRTACVEALAVEDGPSAD-DVKDVFKSVEKALVR 305 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +L + R+DGRD +TVR I+ V LL R HGS+LF RG+TQAI VTLG+ D Q +D Sbjct: 306 QRILAGEPRIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPRDAQIID 365 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G +++ FM+HYNF P + GE R+GA RREIGHGRLARR + VLP +FPYT+R Sbjct: 366 ALEGERKDAFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGLAAVLPNQDEFPYTIR 425 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VC SLA+M AGVP+ PVAGIAMGLVK+G+ F +L+DI GDED Sbjct: 426 VVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGNQFAVLTDILGDED 485 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA RLHIL +M+ V+S +R Sbjct: 486 HLGDMDFKVAGTAAGVTALQMDIKIEGINEQIMEIALEQALHARLHILGQMNSVISTARE 545 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 P + + + D+IR++IG GG IR I E++GA V+IDDDGTVKI + A + Sbjct: 546 VTSADAPSMVTLKVDSDKIRDIIGKGGVTIRAITEESGATVDIDDDGTVKIFGQNQAARD 605 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A EM+ IT EV ++Y+G V +++DFGAFV +DGLVHISQ++ +RV K +D + Sbjct: 606 RAVEMVMEITAEAEVGQVYEGTVARIVDFGAFVTILPGKDGLVHISQIANQRVEKVTDFL 665 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 +EG TV VK+LD D RG+IKLS+K Sbjct: 666 EEGQTVRVKVLDVDQRGRIKLSIK 689 >gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] Length = 709 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/683 (48%), Positives = 471/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 67 YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q VLNP + E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + V+EAI + AK K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E +EG+IV +F +++++VR Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G +++ F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY +R+ Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I+++IG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I E IYKG+V ++ DFGAFV G ++GL+HISQ++ ERV K SD ++ Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689 >gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus 10329] Length = 711 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/694 (48%), Positives = 481/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+ +++++ + L + I EK R +I ++ ++ ++ + EI ++F D Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS223] gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS223] Length = 699 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YI+G+YVLNP + + S L+L V+GT AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245 E EA L E+V+L ++++GH++ + VI+AI++ K A +P ++D + L ++ Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I K R Q+ +K + + S + E+ ++ ++ KVVR Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q +DS Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P A+FPY++R+ Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + R Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR+ ++ I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ EA Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603 Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA SD Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++ V VK+++ D +G+++LS+K Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689 >gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis MSMB43] Length = 706 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/694 (48%), Positives = 483/694 (69%), Gaps = 15/694 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E +W ++LETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLTV+Y E+T Sbjct: 3 EFQWGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKT 62 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ + E Sbjct: 63 YSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPAD 122 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +++ ASAAL +SGLPF GPV A+V Y+N +YVLNP + + S LDL V+GT+ AVL Sbjct: 123 IPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERAVL 182 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+QL EDV+L A++FGH + + I+AI +L + K +P D L Sbjct: 183 MVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDEA----LN 238 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEIVSVFE 296 ++++ + +L + I +K R ++ ++ K ++ + ++ + ++ Sbjct: 239 ARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGNILF 298 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++AK+VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 299 DLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGT 358 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ LP Sbjct: 359 KGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSA 418 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ +G+ F +L Sbjct: 419 DEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GR+HIL +M Sbjct: 479 TDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMK 538 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++ + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG V IA Sbjct: 539 EAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVVTIA 598 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S++ + A++ I +IT EV ++Y+G V+K++DFGA V+ +DGL+HIS++ ER Sbjct: 599 STNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIVNER 658 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V +D +KEG V VK++ D++G+++LS K + Sbjct: 659 VKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 692 >gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis AJ13355] Length = 715 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 14 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 73 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI V+ + + P Sbjct: 74 YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPD 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V YIN QYVLNP DE + S LDL V+GTQ+AVL Sbjct: 134 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQNAVL 193 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VIE I+ L K +P ++ S++ Sbjct: 194 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTALISRVA 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E S + EI + ++ Sbjct: 254 ALAETRISDAYRIT----DKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEKN 309 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 310 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 369 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 370 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 429 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI G Sbjct: 430 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDILG 489 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 490 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 549 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 550 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 610 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 669 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+++LS+K Sbjct: 670 DYLQMGQEVPVKVMEVDRQGRVRLSIK 696 >gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] Length = 711 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 474/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A+++GH + + VI+ I++L K K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEAGKPRWDWQPEAVNEA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSEAYRITDKQERYAQVDVIKSETIDTLVAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P QFPY Sbjct: 364 IIDEIMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTMEQFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGDNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL+ M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ V VK+L+ D +G+I+LS+K Sbjct: 664 DYLQMNQEVPVKVLEVDRQGRIRLSIK 690 >gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8) (polynucleotid phosphorylase) (pnpase) (cap87k) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus asymbiotica] Length = 708 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/683 (48%), Positives = 477/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G++PG + RRE RP E E L++R+IDR +RPLF + + NE Q++ V+ + + +P Sbjct: 68 YAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL VSGT AVL Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ L+E+ +L A++FGH++ + VI+ I+ L KE + ++ L + ++ Sbjct: 188 MVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQELHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R Q+D +K ++++ + + +E EI + +++ VVR+ Sbjct: 248 ALAESRLGDAYRITEKQERYAQVDVIKDEVIAALLEQDEALDEAEIHEILGNLEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G++A+QMD+KI GI+ IM +AL QAK RLHIL+ M + ++ R Sbjct: 488 LGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINCPRND 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AISRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 VGQEVSVKVLEVDRQGRVRLSIK 690 >gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum GMI1000] gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum GMI1000] Length = 717 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/697 (49%), Positives = 487/697 (69%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EANQLSE+V+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L E PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103] gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103] Length = 757 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 56 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 115 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI V+ + + P Sbjct: 116 YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPD 175 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V YIN QYVLNP DE + S LDL V+GTQ+AVL Sbjct: 176 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQNAVL 235 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VIE I+ L K +P ++ S++ Sbjct: 236 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTALISRVA 295 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E S + EI + ++ Sbjct: 296 ALAETRISDAYRIT----DKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEKN 351 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 352 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 411 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 412 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 471 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F++LSDI G Sbjct: 472 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDILG 531 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 532 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 591 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 592 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 651 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 652 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 711 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+++LS+K Sbjct: 712 DYLQMGQEVPVKVMEVDRQGRVRLSIK 738 >gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=CAP87K; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens] Length = 709 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/683 (48%), Positives = 475/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE +++ V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL VSGT AVL Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ L+E+ +L A++FGH++ + VI+ I+ LA KE + ++ L + ++ Sbjct: 188 MVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQALHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K ++ + + + E EI + ++ VVR+ Sbjct: 248 ELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLEQDETLEEAEIHEILGSLEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P+ +FPYT+R+ Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL+ M + ++ R Sbjct: 488 LGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAITTPRDD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AISRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G VK+L+ D +G+++LS+K Sbjct: 668 VGQETSVKVLEIDRQGRVRLSIK 690 >gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae Sd197] gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197] Length = 734 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 31 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 91 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D + G V VK+L+ D +G+I+LS+K Sbjct: 685 VTDYLLMGQEVPVKVLEVDRQGRIRLSIK 713 >gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica RCB] gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas aromatica RCB] Length = 715 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/699 (50%), Positives = 482/699 (68%), Gaps = 5/699 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+V + + +ETG +ARQ+ GAVL + ETVVL TVV ++ K GQDFFPLT Sbjct: 1 MFNVVKKTFAYGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+TYA G+IPGG+ +RE RP+E E L R+IDR IRPLF + NE QVI VM Sbjct: 61 VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SG+PF GP+ A+V YI+GQYVL P L + +GS LDL V+ Sbjct: 121 NPEIDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237 GT+ AVLMVE EA+QLSE+V+L A++FGH E + I AI++L + K ++ KD Sbjct: 181 GTEAAVLMVESEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKD- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFE 296 L +S ++ L + I K R + + ++ + V+ + + +E + ++F Sbjct: 240 EALVASLSALVSAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDENTVGNLFH 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+A +VR +L R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+ V TLGT Sbjct: 300 EIEASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +D+L+G R+ FM+HYN P ATGE R+G P RREIGHGRLA+RA+ VLP+ Sbjct: 360 NRDEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKP 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 F Y++R+VSEITES+GSSSMA+VCG LAL+DAGVP+ VAGIAMGL+KDG+ F +L Sbjct: 420 EDFSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI++ IM +AL QAK R+HILN M Sbjct: 480 TDILGDEDHLGDMDFKVAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQ 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + R ++ + PR+ I P++IR+VIG GG VIR + E+TG ++I DDGT+ IA Sbjct: 540 ESAAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++S AAR I +IT E+ KIY+G V+K++DFGA V +DGL+HISQ++ ER Sbjct: 600 ATSGEAAAAARSRIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V K D VKEG V VK+L+ DDRG++KLSMK + G Sbjct: 660 VNKVEDYVKEGQIVRVKVLETDDRGRVKLSMKAAAADEG 698 >gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus RIMD 2210633] gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus K5030] gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus K5030] Length = 711 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/694 (48%), Positives = 481/694 (69%), Gaps = 9/694 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P + +M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E S LDL V Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A++ + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+ +++++ + L + I EK R +I ++ ++ ++ + EI ++F D Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV K SD + EG V VK+L+ D +G+++LSMK Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236] gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236] Length = 706 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + + ++ + N GEI + D++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTAVLLAQDETLNAGEIHDILGDVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK D+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYDGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVKVKVMEVDRQGRIRLSIK 690 >gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida subsp. multocida str. Pm70] gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70] Length = 714 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/691 (48%), Positives = 480/691 (69%), Gaps = 11/691 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q++ V+ + + P Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP ++E Q LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VI+AI + K + + + L E++ Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW---NEGEIVSVFEDIQAKV 302 + + L + I EK R +QID +K +++ ++E + +EG+IV +F +++++ Sbjct: 247 AIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALESQI 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ ++ + R+DGR +TVR + G+L RTHGS++F RG+TQA+ V TLGT D Q Sbjct: 307 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L+G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P A+FPY Sbjct: 367 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GD Sbjct: 427 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGD 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + + Sbjct: 487 EDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAP 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + +F PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA+ + Sbjct: 547 RADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAA---VD 603 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +A+E++ I D+ E +YKG+V ++ DFGAFV G ++GLVHISQ++ ERV K Sbjct: 604 GNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEK 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SD + G V VK+++ D +G+I+L+MK V Sbjct: 664 VSDYLAVGQEVTVKVVEIDRQGRIRLTMKEV 694 >gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 716 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/688 (48%), Positives = 476/688 (69%), Gaps = 2/688 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +IN Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIE + + K K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK VR +QID +K ++++ ++E + +EG I+ + +++++VR+ Sbjct: 247 ALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQIVRS 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + +L RTHGS+LF RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT +G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I P +I++VIG GG IR + E+T ++IDDDGTVKIA++ +A Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKA 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 I I EVN+IY G+V +V+DFGAFV G ++GLVHISQ++ ERV + +D + Sbjct: 607 VMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLT 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 G V VK+++ D +G+I+L+MK ++ Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMKDINNT 694 >gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis HAW-EB3] gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis HAW-EB3] Length = 704 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/689 (50%), Positives = 478/689 (69%), Gaps = 18/689 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TY Sbjct: 11 FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTY 70 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D E +P V Sbjct: 71 AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 130 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +SM+ SAAL +SGLPF GP+ A+V Y +G+YVLNP + + S LDL V+GTQ AVLM Sbjct: 131 ISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLIVAGTQGAVLM 190 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLE 241 VE EA L E+V+L +++GH++ + VI AI++L K A +P V D+ +K++ Sbjct: 191 VESEAAALPEEVMLGGVVYGHDQQQVVISAINEL-KAEASKPAWDWTAPVQDADLVAKIK 249 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + + ++ + I K R Q+ +K +E+ + EI + ++ + Sbjct: 250 D----LAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLGSLEKQ 305 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ ++ R+DGR+ + VR ++ G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 306 VVRSRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 365 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VDS+ G N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY Sbjct: 366 KVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 426 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 485 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + E Sbjct: 486 DEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAIGE 545 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + PR+ + I P++IR+VIG GG IR + E+TG + ++DDGTVKIAS A Sbjct: 546 HRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS---A 602 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +A +E IR I ++ EV IY G+VV+++DFGAFV +DGLVHISQ++ ERVA Sbjct: 603 NGDATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 SD ++ G V VK+++ D +G+++LSM Sbjct: 663 NVSDYLQVGQEVKVKVMEVDRQGRVRLSM 691 >gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas maltophilia K279a] gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas maltophilia K279a] Length = 702 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/696 (50%), Positives = 480/696 (68%), Gaps = 12/696 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L T V +S ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKN+ Q+I VM + + Sbjct: 65 KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPDVD 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +++ ASAAL L+G PF GP+ A+V Y NG+Y+LNP + E S L+L V+GT +A Sbjct: 125 GDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTSNA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239 VLMVE EA LSE+V+L A+ FGH E + VI AI++L +P ++ S Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALISA 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297 L+E + + E +V +K R I +KK + + ++ WN E+ F + Sbjct: 245 LKEAIGPRLGEAFQVR----DKLQRRDAISAIKKDVFETLAGRVAAEGWNPAELSKEFGE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + +R +LD KVR+DGR +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+++G + +F+ HYNF P + GE RM P RREIGHGRLA+R + V+P Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LS Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GI+A+QMD+KI GI+E IM ALQQAK GRLHIL EM+ Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L+ R +L ++ PR+ + I PD+IR VIG GG I+ I ++TG +++I DDGT+ IAS Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S++RV Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K DV+KEGD V VK+L+ D +G+I+LSMK V++ Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEG 696 >gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae Cit 7] Length = 701 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 475/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P ++ S + E + Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +++L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor NM305] gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor NM305] Length = 711 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + + +GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E + + G+IV + +++++VR+ Sbjct: 247 ALAEVRLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQIVRS 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS+LF RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R + Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA++ + Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNNAAKR 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 E I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ RV + +D + Sbjct: 607 VMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+L+MK Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMK 689 >gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1] gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1] Length = 740 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/687 (49%), Positives = 468/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 37 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 96 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI V+ + + P Sbjct: 97 YAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPD 156 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V YIN QYVLNP DE Q LDL V+GTQ+AVL Sbjct: 157 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGTQNAVL 216 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VIE I+ L K +P ++ S++ Sbjct: 217 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTPLISRVA 276 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E + + EI + ++ Sbjct: 277 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDGSEIGDIVHSLEKT 332 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 333 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQ 392 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 393 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 452 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI G Sbjct: 453 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 512 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM AL QAK RLHIL M + +S Sbjct: 513 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAIST 572 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 573 PRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 632 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 633 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 692 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+++LS+K Sbjct: 693 DYLQMGQEVPVKVMEVDRQGRVRLSIK 719 >gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans C54] Length = 718 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAV+ + +TVVLATVV + K GQ FFPLT Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V YI+GQY +NP + + S LDL V+ Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT++AVLMVE EA+QLSE+++L +++GH + + VI AI +L K K +P D Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 L ++ +E L + I EK R ++ ++ + + ++ + E +V Sbjct: 241 A----LIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAV 296 Query: 295 FED-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 D +++ +VR +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+ Sbjct: 297 TVDNILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT++DEQ +D+L G R+ FM+HYN P ATGE R+G P RREIGHGRLA+RA+ Sbjct: 357 VVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRAL 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 P+LP F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+ D Sbjct: 417 IPLLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILD 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRL Sbjct: 477 GGKFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRL 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I D Sbjct: 537 HILGKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISD 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DGT+ IAS A+ + A+ I +T EV ++Y G V++++DFGA V RDGL+HI Sbjct: 597 DGTIVIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+++ R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 657 SEIANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697 >gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] Length = 693 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/691 (50%), Positives = 475/691 (68%), Gaps = 13/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + + + LE+G IARQ+DGAV+ TVVL T V +++ +GQDFFPLTV+YQ Sbjct: 3 ENITFSYGKHQVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E++YA G+IPGGY RRE RP+ENE L+SR+IDR +RPLF + + NE QVI +VM + + Sbjct: 63 EKSYAAGRIPGGYFRREGRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDI 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 SP + +M+ ASAA+ LSG+PF GP+ A+V Y NG Y+LNP E Q S LDL V+GT+ Sbjct: 123 SPDIPAMIGASAAIALSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDLDLVVAGTEG 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238 AVLMVE +AN+L EDV+L A+++GH + + VI AI +LA K +P D + Sbjct: 183 AVLMVESQANELPEDVMLGAVMYGHEQMQVVINAIRELAAKAGKPAWDWQPAPADEALIA 242 Query: 239 KLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 K+ E + D V+ + I +K R + + + + SE WN + + D Sbjct: 243 KVRE-----LAHDKLVAAYQIADKQERQAAVAAVHEAAQAALVSE-DGWNAAAVGNTVHD 296 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +VVR +L K+ R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT Sbjct: 297 LEYRVVRDRILAKEPRIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTG 356 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L+G R+ FM+HYNF P + GE R+G+P RREIGHGRLARR + +LP + Sbjct: 357 RDAQIIDALTGEYRDIFMLHYNFPPFSVGETGRVGSPKRREIGHGRLARRGVTAILPPES 416 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 417 TFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPVKTPVAGIAMGLVKEGERFTVLS 476 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+ IM AL QAK GRLHIL M++ Sbjct: 477 DILGDEDHLGDMDFKVAGSANGVTALQMDIKIDGITREIMEQALTQAKAGRLHILEIMNQ 536 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +++ R ++ E+ PR + I ++I++VIG GG IR I E TG + I+DDGT+KIA+ Sbjct: 537 AIAQPRAEISEYAPRFTTLRIDVEKIKDVIGKGGATIRSITETTGTTIEIEDDGTIKIAA 596 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + AR +I IT PE+ +IY +VVK+ DFGAFV F ++GLVH+SQ++ RV Sbjct: 597 VDKTAADDARRIIEEITAEPEIGRIYDAKVVKITDFGAFVAFLPGKEGLVHVSQIAEHRV 656 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D + G V VKLL+ D +G+++LS+K Sbjct: 657 NNVEDELSVGQEVKVKLLEIDRQGRVRLSIK 687 >gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 721 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 494 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIK 700 >gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC 29909] gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC 29909] Length = 706 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT DAVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTADAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A+IFGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ S + EI + D++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLDASEIQDILGDVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690 >gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 711 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 701 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/681 (50%), Positives = 474/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSPSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P ++ S + E + Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 721 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 494 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY +V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIK 700 >gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] Length = 712 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/701 (49%), Positives = 486/701 (69%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 LFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ QYVLNP ++ + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA QL EDV+L A++FGH + + I+AI +L + K +P D Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289 L ++ +E L + I +K R ++ ++ + ++ + ++ Sbjct: 243 A----LIASITAAAQEPLLAAYQIRDKQARSTKLKEVYAATSAKLEADAAAAGTTPADKA 298 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + +V DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+ Sbjct: 299 TVGNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQAL 358 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT+ DEQ +D+L G R FM+HYN P ATGE R+G+P RRE+GHGRLA+RA+ Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRAL 418 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ + Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL+QAK GRL Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALEQAKEGRL 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M +S + QL EF PR+ + I P++IR+VIG GG VIR + E+TG ++I D Sbjct: 539 HILGKMKGAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+HI Sbjct: 599 DGVVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHI 658 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++ ERV +D +KEG V VK++ D++G+++LS K + Sbjct: 659 SEIVNERVKDINDYLKEGQVVKVKVIQVDEKGRVRLSAKAL 699 >gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum DSM 180] gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum DSM 180] Length = 699 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/688 (51%), Positives = 476/688 (69%), Gaps = 4/688 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + ++LETG IARQ+DGAVL +TVVL TVV D+ +DF PLTV YQE+T Sbjct: 9 EFQFGNQTVRLETGEIARQADGAVLVNMDDTVVLVTVVVDKRPGAERDFLPLTVEYQEKT 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+E EIL +R+IDR IRPLF + + NE Q+I V + +P Sbjct: 69 YAAGRIPGGFFRREGRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLNPAVNPE 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAV 185 V +++ ASAAL LSG PF GP+ A+V Y NG+Y+LNP L LDL V+GT AV Sbjct: 129 VPALIGASAALALSGAPFNGPIAAARVGYKNGEYILNPALTGLNPDSDLDLVVAGTDKAV 188 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 LMVE EA LSE+++L A++FGH + + VI+AI +LA K + + + E Sbjct: 189 LMVESEARGLSEEIMLGAVLFGHEQMQVVIQAIRELAAEAGKPAMDWTPHAVNPVLTEAV 248 Query: 246 QMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQAKVV 303 ++ D + + I EK R + + +V + E +W E ++ + E +++ V Sbjct: 249 RLAGGDAIAAAYRIKEKQARYTALGAARTAIVEQLCAGETPAWTESQVKAAIEALESTTV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +L + R+DGRD++TVR I+ + G+L RTHGS+LF RG+TQA+V+ TLGT D Q + Sbjct: 309 RESILAGEPRIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDSQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+L G +R FM+HYNF P GE+ R+G+P RREIGHGRLA+R + V+P +FPY++ Sbjct: 369 DALEGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFPYSV 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMA+VCG+SLALMDAGVPI PVAG+AMGL+K+G+ F +L+DI GDE Sbjct: 429 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAVLTDIMGDE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GI A+QMD+KI GI+ IM +AL QAK GRLHIL EM+KV+ R Sbjct: 489 DHLGDMDFKVAGTADGINALQMDIKIEGITREIMEIALAQAKEGRLHILGEMNKVIDSHR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +++ E PR+ + I P++IR+VIG GG VIR I E+TGA ++I+DDG VKI S A Sbjct: 549 VEMSEHAPRIIEIKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVVKIFSVVKAAG 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A+ IR IT EV K+Y+G+V ++MDFGAFV RDGLVHISQ+ ERV SD Sbjct: 609 EEAKRRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSVSDK 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +KEGD V VK+L+ D +G+I+LSMK V+ Sbjct: 669 LKEGDVVRVKVLEVDKQGRIRLSMKAVE 696 >gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. pisi str. 1704B] Length = 701 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/681 (50%), Positives = 474/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P ++ S + E + Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans BC] gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans K601] gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans BC] gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans K601] Length = 731 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/694 (47%), Positives = 483/694 (69%), Gaps = 6/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V YING+YVLNP + S +DL V+ Sbjct: 123 NPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QL EDV+L A+++GH + K I+AI +L + K V D + +K Sbjct: 183 GTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKP--VWDWQPEAK 240 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++++ + LR + K +R + + + + + + ++ ++ ++ Sbjct: 241 DEALIAKVAELGEGTLRAAYQNRNKQLRTQACREAYAAVKAGLTEQGVEFDAVKVDNMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A++VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + F+ HYN P ATGEV RMG+ RRE+GHGRLA+RA+ LP Sbjct: 361 ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ F P++ M I P++IR+VIG GG IR + ++TG ++NI++DGT+ IA Sbjct: 541 EAMGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A+ + A+ I IT E+ K+Y+G V KV+DFGA ++ +DGL+HISQ++ ER Sbjct: 601 ATEAAKADEAKRRIEEITAEVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V + D ++EG V VK+L+ DD+G++KLSMK + Sbjct: 661 VERVGDYLQEGQIVKVKVLETDDKGRVKLSMKAL 694 >gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 711 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY +V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri 93-146] gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri 93-146] Length = 707 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ T +T V TVV + ++GQDFFPLTVNYQER Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+ V+ + + SP Sbjct: 68 YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q LDL V+GT +AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I LA K + + + L+ ++ Sbjct: 188 MVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRWEWHAPEVNVALQRRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 +M + L + I EK R ++D++K+ +++ +E + + GEI + ++ VVR Sbjct: 248 EMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDDALDAGEISDILGALEKAVVRG 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE MG+P RREIGHGRLA+R + V+P FPYT+R+ Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + ++ R Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ + I P++I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVAVKVLEVDRQGRVRLSIK 690 >gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12J] gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J] Length = 724 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/697 (49%), Positives = 486/697 (69%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W G +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L A+++GH + + I AI L + K + ++ Sbjct: 183 GTERAVLMVESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 242 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ K + + + + E+ ++ ++ Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAAKLAEAGVEADGVEVDNILFEL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGSSLF RG+TQA+VV LGT+ Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKS 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RRE+GHGRLA+RA+ PVLP + Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPADE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVPI VAG+AMGL+ + + F +L+D Sbjct: 423 FGYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L E PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIGEDGTITIAST 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699 >gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 722 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/701 (49%), Positives = 480/701 (68%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +W + +ETG IARQS GAV+ +TVV+ TVV +S K GQ FFPLT Sbjct: 3 MFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + + + +++AASAAL +SG+PF GPV A+V Y NGQY+LNP R ++ LDL V+ Sbjct: 123 NPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GTQ AVLMVE EANQLSE+V+L A+++GH++ + I AI++L K KD Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPKD- 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 +++ + + LR + I +K R ++ ++ K++++ E + + + + Sbjct: 242 EPFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKLQ-EEGDVDAVAVNDILFE 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +D+L G R+ FM HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 361 RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F Y++R+VSEITES+GSSSMA+VCG LA+MDAGVP+ VAG+AMGL+ DG+ F +L+ Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M + Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R +L PR+ I PD+IR VIG GG I+ + ++TG ++I DDGTV IAS Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S + A+ I IT EV KIY+G VVK+++FGA V+ +DGL+HIS++S ERV Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + D + EG V VKLL D+RG+++LS+K + G I Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTI 701 >gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 711 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL +GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVAAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] Length = 701 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/681 (49%), Positives = 479/681 (70%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV +S + FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI V+ ++ P + +M+ Sbjct: 75 GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF GP+ A+V + Y+LNP ++ SLD+ V+GT+DAVLMVE EA Sbjct: 135 SAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H E + VI+A+++LA K +P ++ + + E + Sbjct: 195 KELTEDQMLGAVLFAHEEFQVVIQAVAELAAEAGKPTWDWQPKPENTALLNAIRGEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +L+ ++V+ +++ + + E+ F +I+ + VR + Sbjct: 255 ISQAYTITV----KQDRYARLGELRDQVVAKLANDEGAPSAAEVKEAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMGA RREIGHGRLARR + +LP +FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLV +GD F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM AL+QA RL+IL +M++V+++SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVIAQSRSELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAA+ Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + +IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS +RV K +DV+KEG Sbjct: 611 QRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTDVLKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691 >gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] Length = 747 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/701 (48%), Positives = 483/701 (68%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+ V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SGLPF GP+ A+V YING+YVLNP + + S +DL V+ Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GT+ AVLMVE EA QL E+V+L A++FGH + K I+AI L + K +KD Sbjct: 183 GTESAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD- 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L ++ ++ + LR + K VR + + + + +++ ++ + D Sbjct: 242 EALIAKVVELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+A +VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L+ Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M + Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E++ ++ F P++ M I P++IR+VIG GG IR + E+TG ++NI++DGT+ IA+ Sbjct: 542 AMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A+ EAA+ I IT E+ KIY+G +VK+++FGA V+ +DGL+HISQ++ ERV Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697 K +D ++EG V VK+L+ DD+G++KLSMK + ++ G P Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702 >gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB] gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB] Length = 711 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/687 (49%), Positives = 468/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI V+ + + P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V YIN QYVLNP DE Q LDL V+GTQ+AVL Sbjct: 128 IVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGTQNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VIE I+ L K +P ++ S++ Sbjct: 188 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTALISRVA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E + + EI + ++ Sbjct: 248 ALAEARISDAYRIT----DKQERYTQVGVIKDETIAALLAEDETLDGSEIGDIVHSLEKT 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM AL QAK RLHIL M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRVRLSIK 690 >gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans 568] gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans 568] Length = 705 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/688 (49%), Positives = 470/688 (68%), Gaps = 12/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ L +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + SLDL V+GT AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKL 240 MVE EA+ LSED +L A++FGH + + VIE I+ L AK + P V ++ L Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNEA-----L 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++++ + L + I EK R Q+D +K +V ++ + + EI + ++ Sbjct: 243 HARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETLLAQDETLDVSEIQDILGSVEK 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + ++P+ FP Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDIL 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 483 GDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 543 TPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + + A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 603 EKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+++LS+K Sbjct: 663 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] Length = 697 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/700 (49%), Positives = 476/700 (68%), Gaps = 14/700 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ V+ T G VL +V K GQDFFPLT Sbjct: 3 MFNIIRKEFQYGQHTVVLETGRVARQANTVVI-TMGGVQVLVAIVAQPKAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAA+ ++G+PF GP+ GA+V ING+Y+LNP L++ + LDL V+ Sbjct: 122 DKTMEGDIAAMLGASAAMSIAGVPFAGPIAGARVGLINGEYILNPTLEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVID 233 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A P V + Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAP-VKN 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIV 292 + KL++ I E ++ K R +D L + V+ F E+ E+ Sbjct: 241 EELLGKLKDAFEAKISEAYTIAV----KQDRYAALDALHVEAVAQFVPENDETGIAAEVD 296 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +FED++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V Sbjct: 297 ELFEDLKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTT 356 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + V Sbjct: 357 TLGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAV 416 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 417 LPAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGER 476 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM AL QA GR+HIL Sbjct: 477 FAVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEAALNQAYAGRMHIL 536 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 NEM++V+S +R ++ P +++ I PD+IR+VIG GG IR I E+T A ++I+D+GT Sbjct: 537 NEMNQVISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGT 596 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V++ + A AA I+++T E IY G+V+++++FGAFV+ DGL+HISQ+ Sbjct: 597 VRVFGETKAAAAAAVAKIQALTAEIEPGTIYVGKVIRIVEFGAFVNILPGTDGLLHISQI 656 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 S ER+A +DV+KEG + V++ D D+RG+IKL+MK ++Q Sbjct: 657 SNERIANVADVLKEGQEIKVQVADVDNRGRIKLTMKDIEQ 696 >gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis MR-1] gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis MR-1] Length = 702 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/690 (50%), Positives = 482/690 (69%), Gaps = 20/690 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 12 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E LI+R+IDR IRPLF +KNE QVII V+ D E P ++ Sbjct: 72 AGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + S L+L V+GT+ AVLMV Sbjct: 132 SMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQ 246 E EA L E+V+L ++++GH++ + VI+AI++ K A +P + D++ +E + Sbjct: 192 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKP----TWDWTAPVEDEALVA 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 IKE L + FI ++ KQ + +K + + + E+ ++ ++ K Sbjct: 247 QIKE-LAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEKK 305 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 306 VVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 365 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY Sbjct: 366 KIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 426 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 485 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 486 DEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGS 545 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ Sbjct: 546 HRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG- 604 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 605 --EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 663 NVSDHLELNQEVTVKVMEVDRQGRVRLSIK 692 >gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3] gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3] Length = 684 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/678 (49%), Positives = 468/678 (69%), Gaps = 10/678 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA GKIPGG+ RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVLMVE EA LSED +L Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256 A++FGH + + VI+ I+ L K K +P ++ L ++ + + L + Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LNARVAALAESRLSDAY 237 Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316 I +K R Q+D +K + ++ +E + + E+ + I+ VVR+ +L + R+DG Sbjct: 238 RITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297 Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376 R+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + + F+ Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLF 357 Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436 HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+GSS Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417 Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496 SMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGS 477 Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556 GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + EF PR+ + Sbjct: 478 RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 537 Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616 I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT Sbjct: 538 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAE 597 Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ Sbjct: 598 IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 657 Query: 677 FDDRGKIKLSMKVVDQNT 694 D +G+++LS+K + T Sbjct: 658 VDRQGRVRLSIKEATEQT 675 >gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter uraniireducens Rf4] gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens Rf4] Length = 696 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/687 (48%), Positives = 475/687 (69%), Gaps = 9/687 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V++E+ GR + +ETG++A+Q+ GAV+ + G+T+VL T V ++ K+GQDFFPLTVNYQE+ Sbjct: 5 VQVEFGGRTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQEK 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+ +RE+RP++NE L R+IDR IRPLF + + N+TQ++ V+ D ++ P Sbjct: 65 AYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDP 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 ++SMV ASAALM+S +PF+GP+ G +V ++G+++ NP DE ++ +++ V+ ++DAV Sbjct: 125 GILSMVGASAALMVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSDIEIVVAASKDAV 184 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 +MVE A ++SE+ +L+AI FGH +P++ A +L C+K + + EE+ Sbjct: 185 IMVEGSAAEVSEEDMLEAIFFGHAAIQPLLAAQEEL---CSKAGVAKREVPPPAVNEELK 241 Query: 246 QMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +K+ ++ + I K R ID + + ++ ++E ++ +I + D + + Sbjct: 242 ANVKDIAYARMKEAVRIKSKVERHNSIDAISAETLAALATEFEGCDK-QIKAFLGDFEYE 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR +L R+DGRD++T+R I+ +V LL R HGS+LF RG+TQ++V TLGT DEQ Sbjct: 301 LVREHILKDGERIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G + F++HYNF P + GE S P RREIGHG LA RA+ VLP+ FPY Sbjct: 361 RIDSLFGESKKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVLPKHDDFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVS+I ES+GSSSMA+VCG S+++MDAG+PI PVAGIAMGL+K+G+DF ILSDI G Sbjct: 421 TIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGEDFAILSDILG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G+TA+QMD+KIGG++ IM +AL+QA GRLHIL M+ + Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGIALKQALEGRLHILGRMADTIKT 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 S+ L + PR+ + + D+IR+VIG GGK IRGI E TG ++IDD G + IAS+ A Sbjct: 541 SKSDLSTYAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDKA 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MIR +T E K+Y G V KVM+FGAFV DGLVHIS+L TERV + Sbjct: 601 ACDLAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNVT 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D++KEGD V VK + D +GKIKLS K Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRK 687 >gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 706 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/683 (49%), Positives = 470/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTEGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K + ++ L ++ Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNETLHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K+ +++ ++ S + GEI + ++ VVR+ Sbjct: 248 ELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAALLAQDESLDAGEIQDILGSVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + ++P+ FPYT+R+ Sbjct: 368 LMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKF 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV ++Y+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L+ D +G+++LS+K Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690 >gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1] gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens CN-32] gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1] gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens CN-32] gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens 200] Length = 699 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/689 (49%), Positives = 481/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + + S L+L V+GT AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAGTASAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242 E EA L E+V+L ++++GH++ + VI AI++ K A +P+ V D ++++E Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVINAIAEF-KAEAGKPMWDWTAPVQDETLVAQIKE 247 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + ++ K R Q+ +K + + + + E+ ++ ++ KV Sbjct: 248 LAEAGLGDAYKIQV----KQDRYAQVAVVKAATKEALLASNPNIDLREVDNLLGSLEKKV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGR+ + +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTV+IASS+ Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIK 689 >gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 699 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/690 (50%), Positives = 482/690 (69%), Gaps = 20/690 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E E LI+R+IDR IRPLF +KNE QVII V+ D E P ++ Sbjct: 69 AGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + S L+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQ 246 E EA L E+V+L ++++GH++ + VI+AI++ K A +P + D++ +E + Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKP----TWDWTAPVEDEALVA 243 Query: 247 MIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 IKE L + FI ++ KQ + +K + + + E+ ++ ++ K Sbjct: 244 QIKE-LAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEKK 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 303 VVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY Sbjct: 363 KIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI G Sbjct: 423 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 483 DEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGS 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ Sbjct: 543 HRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG- 601 Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 --EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSIK 689 >gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato Max13] gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato K40] gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/681 (50%), Positives = 473/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + GE+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 + V V +LD D+RG+IKLS+K Sbjct: 671 EEVEVLVLDVDNRGRIKLSIK 691 >gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans SPH-1] gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans SPH-1] Length = 753 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/696 (47%), Positives = 485/696 (69%), Gaps = 6/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+ V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++A SAAL +SG+PF GP+ A+V +ING+YVLNP + + S +DL V+ Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKD 236 GT+ AVLMVE EA QL EDV+L A++FGH + + I+AI +L + K P+ V +KD Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGK-PVWDWVAPAKD 241 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 +L +++ + E LR + I K R + + + + +++ ++ ++ + Sbjct: 242 -EELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A++VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 361 ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ F P++ M I P++IR+VIG GG IR + E+TG +++I +DGT+ IA Sbjct: 541 EAMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A+ + A+ I IT E+ KIY+G V K++DFGA V+ +DGL+HISQ++ ER Sbjct: 601 SSDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V + +D ++EG + VK+++ D++G++KLS+K + + Sbjct: 661 VERVADYLQEGQIIKVKVMETDEKGRVKLSLKALTE 696 >gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] Length = 733 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/714 (49%), Positives = 491/714 (68%), Gaps = 18/714 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + +ETG IARQ+ GAV+ T G TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E++YA G+IPGGY +RE +PTE E L SR+IDR +RPLF + + NE QVII+V+ Sbjct: 61 VDYVEKSYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E P + SM+ +SAAL +SG+PF+GP+ A+V YINGQYVLNP + + S +DL V+ Sbjct: 121 DPEIDPDIASMIGSSAALSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+++L ++FGH + + I AI L K K D K Sbjct: 181 GTEQAVLMVESEAKQLSEEIMLGGVVFGHEQLQLAINAIHDLVKQAGKPEW--DWTPAPK 238 Query: 240 LEEEMSQMIKEDLR--VSCF-IPEKYVRCKQIDDLKKKMVSYFS-----SEHSSWNEGEI 291 E+ +SQ+ + L F I EK +R ++ ++ ++ + S + +E EI Sbjct: 239 NEDLISQVREYALAGLTEAFGIREKQLRSTKLKEVSTQVKESLAKKAEESGTDAPDEVEI 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ D+++ +VR +L+ + R+DGRD+ +VR IS ++G+L RTHGS+LF RG+TQA+V+ Sbjct: 299 DNIIFDLESSIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVI 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ VDS+ G R FM+HYN P ATGEV R G+P RREIGHGRLA+RA+ Sbjct: 359 ATLGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALIA 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+K+G+ Sbjct: 419 TLPNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGN 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAKEGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + +S SR +L F PR+ + I P+++R+VIG GG IR + E+TG ++ I DDG Sbjct: 539 LGKMKEAISGSRNELSSFAPRMISLNINPEKVRDVIGKGGATIRTLTEETGCQIEITDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + IASS L + A+ I +T E+ K+Y+G V+K++DFG + +DGL+HIS+ Sbjct: 599 HITIASSDLEAAQEAQRRIEELTAEVEIGKVYEGTVIKLLDFGGVLQILPGKDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-------VVDQNTGKPI 698 ++ R+ +DV+ G V VK+++ DDRG+I+LS K +VD N +P+ Sbjct: 659 IANFRIKDINDVLSIGQKVNVKVIESDDRGRIRLSAKAIGGIPGLVDPNAKEPV 712 >gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC 43969] gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC 43969] Length = 706 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ S N EI + D++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690 >gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis str. Arkansas] gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis str. Arkansas] Length = 796 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/705 (50%), Positives = 487/705 (69%), Gaps = 9/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EW G+ L LE+G+IARQ+ GAV+ +Y T VLATVV ++ K+ DF PLT Sbjct: 1 MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF + +E ++ N++ + Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177 D + P V ++V A+AAL +SG+PF G VVGA+V Y+ G+Y+LN DE SLDLF Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237 +SG +D+VLMVE EA++LSE +L AI FGH C+ VI I + + + PI D Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHESGQTPIDFIPHDI 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVS 293 S L ++ KED ++ K R ++++L+ K++S + ++S+ ++ +IV+ Sbjct: 240 SSLVSDIESSYKEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVT 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + + +VR+ ++D R+DGR + +RDI +V +L + HGS+LF RG+TQA+VV Sbjct: 300 ALKTFERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTA 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI VL Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+K+ D F Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRF 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IILSDI GDEDHLG MDFKVAGT G+TA+QMDMKI GI +I+ AL QAK GR+HIL+ Sbjct: 480 IILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILS 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M+ V+ ESR ++ PR+E + I D+IRNVIG GGK IR I E+TGAK+ I DGTV Sbjct: 540 KMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + +E A+ MI I PE+ K+++G VV++M FGAFV F G + GLVHIS++ Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIR 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 E ++ V+ D V V ++ DR I+LSM+ VDQ +G+PI Sbjct: 660 NEHISSVGSVISLNDKVKVLVIGI-DREHIQLSMRRVDQESGEPI 703 >gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus DSM 2379] gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus DSM 2379] Length = 706 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/690 (49%), Positives = 469/690 (67%), Gaps = 11/690 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V++E+ G+ + + TG++A+Q++GAV+ G+T+VL T V + K+GQDFFPLTVNY Sbjct: 3 HVVDVEFGGKMVTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYT 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPG + RRE+RP++ E L R+IDR IRPLF + + N+TQ+I V+ D + Sbjct: 63 EKAYAGGKIPGSFFRREARPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDH 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P ++SM+ ASAAL +S +PF+GP+ G +V ++G+ + NP DE + S +++ V+ ++D Sbjct: 123 DPRILSMLGASAALEVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDMEIVVAASRD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSKDFS 238 A++MVE EA +SED +LDAI FGH +PV+EA KL ++ AK P V+D + Sbjct: 183 AIIMVEGEARFVSEDDMLDAIFFGHAAVQPVLEAQEKLKQLAGVAKRDVPPPVVDQALLA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++ E + E + + I K R QID + + + ++E NE +I + D+ Sbjct: 243 RVRE----LASERMSAAVKIKSKQERHNQIDLITAETTASLAAEFEG-NEKQIRAFLGDL 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + VR +L+ VR+DGRD+ T+R I+ + GLL RTHGS+LF RG+TQA+VV TLGT Sbjct: 298 EYECVRADVLNSGVRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSS 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +DSL G R F++HYNF P + GE S P RREIGHG LA RA+ +LP+ Sbjct: 358 DEQRMDSLYGEYRKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALSAILPKHDD 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSE ES+GSSSMA VCG ++LMDAGVPIS PVAGIAMGL+K+G+ ILSD Sbjct: 418 FPYTIRIVSETLESNGSSSMAAVCGGCMSLMDAGVPISAPVAGIAMGLIKEGEKVAILSD 477 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+ GITA+QMD+KIGG++ IM AL QA+ GRLHIL +M++ Sbjct: 478 ILGDEDHLGDMDFKVAGSSDGITALQMDIKIGGVTREIMQKALAQAREGRLHILGKMAET 537 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L R ++ F PR+ + + D+IR+VIG GGK IR I E TG V+I+D G + IAS+ Sbjct: 538 LGAPRPEMSSFAPRITTIWVKTDKIRDVIGTGGKNIRNITETTGVTVDIEDTGRINIAST 597 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A +MIR +TD E K+Y G V K+MDFGAFV DGLVHIS+L T+RV Sbjct: 598 SKEACDLAIQMIRGLTDEAEEGKLYMGIVKKIMDFGAFVEILPGTDGLVHISELDTKRVK 657 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++V+ EGD V VK + D GK+KLS K Sbjct: 658 TVTEVLNEGDRVLVKCIGVDKNGKVKLSRK 687 >gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] Length = 747 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/701 (48%), Positives = 484/701 (69%), Gaps = 5/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+ V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+A SAAL +SG+PF GP+ A+V YING+YVLNP + + S +DL V+ Sbjct: 123 NPEVDADIAAMIATSAALAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GT+ AVLMVE EA QL E+V+L A++FGH + K I+AI L + K +KD Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD- 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L +++++ + LR + K VR + + + + +++ ++ + D Sbjct: 242 EALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+A +VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L+ Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M + Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E++ ++ F P++ M I P++IR+VIG GG IR + E+TG ++NI++DGT+ IA+ Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A+ EAA+ I IT E+ KIY+G +VK+++FGA V+ +DGL+HISQ++ ERV Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697 K +D ++EG V VK+L+ DD+G++KLSMK + ++ G P Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702 >gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis 29755] gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis SH0165] gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis 29755] gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis SH0165] Length = 709 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ AV+A+ +T V TVV + + +GQDFFPLTV+YQERT Sbjct: 7 QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + SP Sbjct: 67 YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP E + S LDL V+GT AVL Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE EA+ L+E+ +L A++FGH + + VIE I + K K + + + L ++ Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + L + I EK R +QID +K +++ ++E + + G+IV + +++++VR+ Sbjct: 247 ALAEARLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQIVRS 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ + R+DGR +TVR + G+L RTHGS+LF RG+TQA+ V TLGT D Q +D Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + + F+ HYNF P + GE R+G+P RREIGHGRLA+R + V+P +FPY +R+ Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDH Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QAK R+HIL M + + R + Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + +F PR+ M I P +I++VIG GG IR + E+TG ++IDDDGTVKIA++ + Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNNAAKR 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 E I I EVN IYKG+V +V+DFGAFV G ++GLVHISQ++ RV + +D + Sbjct: 607 VMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVADYLS 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ + +G+I+L+MK Sbjct: 667 VGQDVQVKVVEIERQGRIRLTMK 689 >gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473] gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473] Length = 706 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+ LSED +L A++FGH + + VIE I+ L K +P V++ +++++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEVLYARVK 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E S + + R++ EK R Q+D +K ++ ++ + + EI + ++ Sbjct: 248 ELASARLGDAYRIT----EKQERYTQVDAIKANVIEALLAQDETLDTSEIQDILGSVEKD 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPY Sbjct: 364 NIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 424 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM AL QAK RLHIL M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA++ Sbjct: 544 PRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+I+LS+K Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRIRLSIK 690 >gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei VT8] gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei VT8] Length = 722 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/693 (51%), Positives = 474/693 (68%), Gaps = 12/693 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G LETGRIARQ+ GAVL + G+T VL TVV + K GQ FFPLTVNYQE+TY Sbjct: 26 FEMGGETFTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKPGQGFFPLTVNYQEKTY 85 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L SR+IDR IRPLF Y NE QV++ VM P + Sbjct: 86 AAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSASKNHDPDI 145 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186 +M+AASAAL +SG+PF+GP+ A+V Y N + Y LNP +E SL D+ V+GT +AVL Sbjct: 146 AAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLLDMVVAGTDEAVL 205 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA L+ED +L A++FGH E + I AI + A K +P +++ + ++ Sbjct: 206 MVESEAKGLTEDQMLGAVLFGHQEMQTAITAIKEFAAENGKPRWEWQPEAENTELLNAIK 265 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQA 300 E I+E + I +K R +++ ++K V + E E V F ++ Sbjct: 266 AEFGGAIEE----AYAIRDKMARYERLGEIKSAAVEKLAGEEEGQPSEEEVKKYFGKVEK 321 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVR +++ K R+DGRD++TVR I +VG+L HGS+LF RG+TQAIV TLGT D Sbjct: 322 SVVRLQVIEGKPRIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDV 381 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G +++ F+ HYNF P + GE RMG+P RREIGHGRLA+R + V+P +FP Sbjct: 382 QIIDALEGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGVAAVMPTIEEFP 441 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+GD F +L+DI Sbjct: 442 YAIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLTDIL 501 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QA RLHIL+EM+KV++ Sbjct: 502 GDEDHLGDMDFKVAGTKEGVTALQMDIKIQGITDEIMEIALEQANAARLHILDEMNKVIA 561 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R +L + P + + I PD+IR+VIG GG IRGI ++TGA +++DDDG VKI + + Sbjct: 562 EPRAELSDRAPSITTIKIHPDKIRDVIGKGGATIRGICDETGASIDLDDDGNVKIYADNA 621 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A +AA ++ IT EV IYKG+V +++DFGAFV+ +DGLVHISQ+S R+ Sbjct: 622 AAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISERRIENV 681 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +D + EG V VK+LD D+RG++KLSMK V + Sbjct: 682 TDELSEGQEVLVKVLDVDNRGRVKLSMKEVKEG 714 >gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 701 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/681 (50%), Positives = 472/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + SIT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC 43970] gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC 43970] Length = 706 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ S N EI + D++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690 >gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b] gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b] Length = 712 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/687 (48%), Positives = 472/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q LDL V+GTQ+AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVAGTQNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+ L+ED +L A++FGH++ + VIE I+ L K +P + +++ Sbjct: 188 MVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPANDPLIARVA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E + ++ EI + ++ Sbjct: 248 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSLEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 SLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQEDFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 484 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKEAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli] Length = 711 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/689 (48%), Positives = 471/689 (68%), Gaps = 14/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TL T D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLA MDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 >gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] Length = 747 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/702 (48%), Positives = 484/702 (68%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQ+ GAVL +TVVLATVV + K GQDFFPLT Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+ V+I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--RLDEDQGSLDLFV 178 + E + +M+A SAAL +SGLPF GP+ A+V YING+YVLNP L +D +DL V Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDS-QMDLVV 181 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKD 236 +GT+ AVLMVE EA QL E+V+L A++FGH + K I+AI L + K +KD Sbjct: 182 AGTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD 241 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L +++++ + LR + K VR + + + + +++ ++ + Sbjct: 242 -EALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A +VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TLGT Sbjct: 301 DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + F+ HYN P ATGEV RMG+ RREIGHGRLA+RA+ LP Sbjct: 361 ERDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+K+ + F +L Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E++ ++ F P++ M I P++IR+VIG GG IR + E+TG ++NI++DGT+ IA Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A+ EAA+ I IT E+ K+Y+G +VK+++FGA V+ +DGL+HISQ++ ER Sbjct: 601 ATDGAKAEAAKLRIEQITAEVEIGKVYEGPIVKILEFGALVNLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697 V K +D ++EG V VK+L+ DD+G++KLSMK + ++ G P Sbjct: 661 VEKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702 >gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 472/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P ++ + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLGAIRSEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CMR15] Length = 717 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/697 (49%), Positives = 486/697 (69%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI + + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRDGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L E PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus 273-4] gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter arcticus 273-4] Length = 700 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/700 (49%), Positives = 477/700 (68%), Gaps = 9/700 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + +ETGRIARQ++ ++ G TV++A VV + K+GQ+FFPLT Sbjct: 3 MFNTIKREFQYGNQQVVIETGRIARQANSILVHMGGVTVLVAAVVKSDA-KEGQNFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+ V+ Sbjct: 62 VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D S + +++ ASAAL +S PF GPV A+V +ING+YVLNP L+E + LDL V+ Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDF 237 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A AK+ +D Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRD- 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293 LE M + + + I +K R +++++K + + + S + + VS Sbjct: 241 QALETGMKEQFGAQVSDAYTITDKQARYSKLNEIKDAAIVALAGDAESESYSDTVSELKE 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 ++ D++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+V T Sbjct: 301 IYNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D +DSL+GT R+ FM+HYNF + GE R G P RREIGHGRLARR + +L Sbjct: 361 LGNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAML 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI PVAGIAMGLVK+G+ F Sbjct: 421 PDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ +IM AL+QA GR+HIL+ Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILD 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M+KVL ESR ++ P ++ I PD+IR+VIG GG IR + E+TGA ++IDD GT+ Sbjct: 541 AMNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTI 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 +I + A +AA I +IT EV K Y+G V +++DFGAFV+ DGLVHISQ++ Sbjct: 601 RIFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFVNVLPNTDGLVHISQIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ERV SD +KEG V V + D D+RG+IKL+MK ++Q+ Sbjct: 661 DERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700 >gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586] gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586] Length = 709 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + NE QVI+ V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 701 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/681 (49%), Positives = 472/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ SLD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI A+ +LA AK P ++ + E + Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEATELLGAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ S E + ++ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 E P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR Sbjct: 551 ENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium petroleiphilum PM1] gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein [Methylibium petroleiphilum PM1] Length = 751 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/696 (48%), Positives = 485/696 (69%), Gaps = 10/696 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + LETG IARQS GAV+ TVVLATVV ++ K GQDFFPLT Sbjct: 3 LFNKITKTFQWGQHTVTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E+S + +++ +SAAL +SG+PF GP+ A+V YING+YVLNP + S LDL V+ Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDS 234 GT+ AVLMVE EA+QL ED++L ++FGH + + I++L + K P D Sbjct: 183 GTEAAVLMVESEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREAGKPEWQWTPPAKDE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ + + + LR + I K R + ++++ ++E ++ ++ ++ ++ Sbjct: 243 DFIAKV----NGLGEAKLRAAYQIRSKQDRTQATRAAYAEVLAALAAEGAAVDKVKVENL 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI+AK+VR+ +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V+ TL Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D+L+G + FM HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 359 GTERDTQRIDALAGEFEDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +F Y +R+VSEITES+GSSSMA+VCG L++MDAGVP+ VAGIAMGL+KDG+ F Sbjct: 419 KKDEFAYAIRVVSEITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL + Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + L ++ +L F PR+ +M I P++IR+VIG GG IR + E+TG ++NI++DGT+ Sbjct: 539 MVEALGGAKEELSVFAPRLYVMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS+ + +AA + I IT E+ K+Y+G V K++DFGA V+ +DGL+HISQ++ Sbjct: 599 IASTDGDKAQAAMKRIEEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +RV K +D + EG V VK+L+ D++G+IKLS+K + Sbjct: 659 QRVEKVTDFLTEGQIVKVKVLETDEKGRIKLSLKAL 694 >gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma phagocytophilum HZ] gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma phagocytophilum HZ] Length = 838 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/708 (49%), Positives = 470/708 (66%), Gaps = 17/708 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+ GAV+ YG T VLATVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKS-KEAVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+ +RE +P++ E LISR+IDRSIRPLF + +E V+ N++ + Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177 D S P V+++ ASAAL +SG+PF PV GA++ YI G+ Y+LNP DE +LD+F Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDS 234 + T ++LMVE EA++L+E +L A+ FGH C+ +I+ I + A + CA V Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFV--P 237 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----- 289 D S + + + KE V+ EK R ++D ++ + + S +EG Sbjct: 238 CDLSTIIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYI 297 Query: 290 --EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 +IV + + +VR +L+ K R+DGR + +R+I +V L+ + HGS+LF RGDTQ Sbjct: 298 AQDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQ 357 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 A+V+ LGT +DEQ VD G +R F++HYNF P A GE S + P RREIGHG+LA R Sbjct: 358 ALVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWR 417 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AIHPVLP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+ Sbjct: 418 AIHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLI 477 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+GD + ILSDI GDED+LG MDFKVAGT GITA+QMDMK+ GI ++ AL QAK G Sbjct: 478 KEGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEG 537 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R I+ +M +V+ ESR + E PR+E M I +I+NVIG GGK +R I E+TGAK+ I Sbjct: 538 RFFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEI 597 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 DGTV I + IE+A++MI I PEV KIY G+V ++ +GAFV F GAR GLV Sbjct: 598 SQDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLV 657 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 HIS++ E + +DV+ GD V V ++D D+ I+LSM+ +DQ TG Sbjct: 658 HISEIRNEHINAVADVLAVGDKVKVLVIDM-DKDHIQLSMRRIDQETG 704 >gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341] gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341] Length = 709 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG +ARQ+ AV+AT +T V +VV + GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + NE QVI+ V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 + + P ++SM+ SAAL +SGLPF GP+ A+V +I+GQ VLNP E Q LDL V Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT +AVLMVE EA L+E+ +L A++FGH++ + VI AI++ A A + + Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPVEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ +++ + + L + I EK R +I ++ ++ + +E+ + + EI ++F D Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+ +DF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK RLHIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I D+I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT EV IY G+V ++ DFGAFV +DGLVHISQ++ +RV Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SD + EG V VK+L+ D +G+++LSMK Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691 >gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont] Length = 710 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/687 (48%), Positives = 472/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Q LDL V+GTQ+AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVAGTQNAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 +VE EA+ L+ED +L A++FGH++ + VIE I+ L K +P + +++ Sbjct: 188 IVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPANDALIARVA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I + R++ +K R Q+ +K + ++ +E + ++ EI + ++ Sbjct: 248 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSLEKN 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVRT +L+ + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGERTDSFLFHYNFPPFSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQDAFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ + F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRQEISEFAPRIYTIKINTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRVRLSIK 690 >gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 2250] gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. mori str. 301020] gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Marinobacter algicola DG893] gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Marinobacter algicola DG893] Length = 714 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/692 (50%), Positives = 470/692 (67%), Gaps = 12/692 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ + +ETGRIARQ+ G+VL T + VL TVV + K GQ FFPLTVNY E+TY Sbjct: 17 FELGGKTVTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVNYFEKTY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF K + NETQVI VM P + Sbjct: 77 AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFMNETQVITTVMSSSKNQDPDI 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186 +M+AASAAL +SG+PF+GP+ ++V Y N + Y LNP +E + SL D+ V+GT+DAVL Sbjct: 137 AAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLLDMVVAGTEDAVL 196 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA L+ED +L A++FGH E + + AI + A K +P +++ + ++ Sbjct: 197 MVESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKEFAAEVGKPRWEWQPEAENTELLNAVK 256 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFEDIQA 300 + S D+ + I +K R ++ ++K V + E E E+ F ++ Sbjct: 257 ADFSA----DIEQAYGIRDKMERYARLSEIKSAAVEKLAGEEEGQPAEDEVKKYFAKVEK 312 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +VR ++D K R+DGRD++TVR I +VG+L THGS+LF RG+TQAIV TLGT D Sbjct: 313 TIVRQQVIDGKPRIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTARDM 372 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+L G +++ F+ HYNF P + GE R+G P RRE+GHGRLA+R + V+P +FP Sbjct: 373 QIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVAAVMPTMEEFP 432 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGLVK+GD F +L+DI Sbjct: 433 YTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDQFAVLTDIL 492 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL QA RLHIL EM+KV+S Sbjct: 493 GDEDHLGDMDFKVAGTSDGITALQMDIKIQGITDEIMEIALDQANAARLHILGEMAKVIS 552 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L P + + I P++IR+VIG GG IR I ++TGA +++DDDG VKI + + Sbjct: 553 APRKELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICDETGASIDLDDDGNVKIYADNQ 612 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AA + + IT EV IY G+V +++DFGAFV+ +DGLVHISQ+S R+ Sbjct: 613 DAANAAMKRVMEITAEIEVGAIYSGRVERIVDFGAFVNILPGKDGLVHISQISERRIENV 672 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +D + EG V VK+LD D+RG++KLSMK V + Sbjct: 673 TDELSEGQEVLVKVLDVDNRGRVKLSMKEVKE 704 >gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. B076] gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYTRLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] Length = 716 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/688 (49%), Positives = 468/688 (68%), Gaps = 12/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 18 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + SLDL V+GT AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKISSLDLVVAGTAGAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKL 240 MVE EA+ LSED +L A++FGH + + VIE+I+ L K P+V + L Sbjct: 198 MVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKWDWQAPVV-----NAAL 252 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++++ + L + I EK R Q+D +K +V + + + EI + ++ Sbjct: 253 HARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLVQDETLDASEIQDILSSVEK 312 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 313 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + ++P+ FP Sbjct: 373 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKLEDFP 432 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLSDIL 492 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 493 GDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIS 552 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + +F PR+ + I PD+I++VIG GG VIR + E+T + IDDDGTVKIA++ Sbjct: 553 VPRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTEETDTTIEIDDDGTVKIAATGG 612 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + + A I IT EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K Sbjct: 613 EKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D ++ G V VK+L+ D +G+++LS+K Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 700 >gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 155-74] Length = 690 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/674 (49%), Positives = 465/674 (68%), Gaps = 14/674 (2%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA G+IPG + RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVLMVE EA LSED +L Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQMIKEDLRV 254 A++FGH + + VI+ I++L K K EP+ L ++ + + L Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAALAEARLSD 235 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314 + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ +L + R+ Sbjct: 236 AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRI 295 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374 DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + + F Sbjct: 296 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 355 Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 + HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+G Sbjct: 356 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 415 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 SSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVA Sbjct: 416 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 475 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 G+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + EF PR+ Sbjct: 476 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 535 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614 + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT Sbjct: 536 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 595 Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+ Sbjct: 596 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 655 Query: 675 LDFDDRGKIKLSMK 688 L+ D +G+I+LS+K Sbjct: 656 LEVDRQGRIRLSIK 669 >gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431] Length = 690 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/674 (49%), Positives = 465/674 (68%), Gaps = 14/674 (2%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA G+IPG + RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVLMVE EA LSED +L Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQMIKEDLRV 254 A++FGH + + VI+ I++L K K EP+ L ++ + + L Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAALAEARLSD 235 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314 + I +K R Q+D +K + ++ +E + +E E+ + I+ VVR+ +L + R+ Sbjct: 236 AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRI 295 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374 DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + + F Sbjct: 296 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 355 Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 + HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+G Sbjct: 356 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 415 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 SSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVA Sbjct: 416 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 475 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 G+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + EF PR+ Sbjct: 476 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 535 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614 + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT Sbjct: 536 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 595 Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+ Sbjct: 596 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 655 Query: 675 LDFDDRGKIKLSMK 688 L+ D +G+I+LS+K Sbjct: 656 LEVDRQGRIRLSIK 669 >gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] Length = 701 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/681 (49%), Positives = 472/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ S LD+ V+GT DAVLMVE EA Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVVAGTSDAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI A+ +LA AK P ++ + + E + Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEATELLAAIRSEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +L+ ++V+ S E + ++ + F +I+ + VR + Sbjct: 255 ISQAYTITI----KADRYARLGELRDQVVAKLSGEEGQPSAADVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter metallireducens GS-15] gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter metallireducens GS-15] Length = 697 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/690 (49%), Positives = 473/690 (68%), Gaps = 11/690 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V +++ GR + + TG++A+Q+ GAV+ + GET+VL T V +S K+GQDFFPLTVNYQ Sbjct: 4 QKVNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RPTENE L R IDR IRPLF + + N+TQ++ V+ D ++ Sbjct: 64 EKAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P +++M+ ASAAL +S +PF GP+ G +V ++G+++ NP ++ S L++ V+ ++D Sbjct: 124 DPGILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAASRD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---ISKLAKMCAKE--PIVIDSKDFS 238 AV+MVE A ++SE +L+AI FGH +P+I+A + K A + +E P +D + Sbjct: 184 AVIMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKREIAPPAVDEALGA 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 K++E +K+ +R+ K R +I + + V+ ++ S EI + Sbjct: 244 KVKELAYAQMKDAVRIRS----KQERHNRISAIADETVAALEADFSGRG-AEIKDFLDGF 298 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR +L R+DGRD++T+R I+++VG+L R HGS+LF RG+TQA+V TLGT Sbjct: 299 EYELVREHILKDGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSS 358 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +DSL G R FM+HYNF P + GE S AP RREIGHG LA RA+ VLP+ Sbjct: 359 DEQRIDSLYGESRKRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDD 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVS+I ES+GSSSMA+VCG +L++MDAGVPIS PVAGIAMGL+K+GDD ILSD Sbjct: 419 FPYTIRIVSDILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGDDIAILSD 478 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI G++ IM AL+QAK GRLHIL +M++ Sbjct: 479 ILGDEDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGKMAEA 538 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+ R L + PR+ + + D+IR+VIG GGK +RGI E TG ++I+D G + IAS+ Sbjct: 539 LAAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGVSIDIEDTGKINIAST 598 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A +MIR +T E K+Y G V KVMDFGAFV DGLVHIS+L TERV Sbjct: 599 NKEACDKAIKMIRDLTAEAEEGKLYMGTVRKVMDFGAFVEIFPGTDGLVHISELDTERVK 658 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D++KEGD V VK + D +GKIKLS K Sbjct: 659 DVTDILKEGDKVLVKCIGIDKQGKIKLSRK 688 >gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM 9799] gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM 9799] Length = 698 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/679 (50%), Positives = 475/679 (69%), Gaps = 12/679 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG IARQ+D AVLA+ G+T VL TVV ++++ GQDFFPLTVNYQE+TYA GKIPG Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTYAAGKIPG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+ +RE RP+E E L +R+IDR IRPLF K + NE QVI V+ + SP VV+M+ S Sbjct: 75 GFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDVVAMIGTS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL LSG+PF GP+ A+V + +G+Y+LNP ++E + S LDL V+GT+ AVLMVE EA Sbjct: 135 AALALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLDLVVAGTESAVLMVESEAEV 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMSQMI 248 LSE+++L A++FGH + VI+AI++L K A +P + D+S L +++++ Sbjct: 195 LSEEIMLGAVMFGHQAQQTVIQAINEL-KAEAGKP----AWDWSAPVKNEALAAKVAELA 249 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + L + I EK R + ++ +K + + +E+ +E E+ ++ ++ VVR+ ++ Sbjct: 250 QAGLGDAYRITEKVARLEAVNAVKAQAKAAILAENPEQDEQELSNLLGSLEKSVVRSRII 309 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R+DGRD++ +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G Sbjct: 310 AGEPRIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIIDELIG 369 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + + FM+HYNF P GE +G+P RREIGHG+LA+R + V+P +FPYT+R+VSE Sbjct: 370 ERTDRFMLHYNFPPFCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEEFPYTVRVVSE 429 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 ITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDHLG Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSDILGDEDHLGD 489 Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QA R+HIL M + L R +L Sbjct: 490 MDFKVAGTRDGVTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDEALPAPRAELSM 549 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 PR+ + I PD+IR VIG GG IR + E+TG + I+DDGTVK+AS+ A A Sbjct: 550 HAPRITTIKIHPDKIREVIGKGGATIRALTEETGTTIEIEDDGTVKVASTDGAAAAEAIR 609 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 I IT E +IYKG+VV+++DFGAFV+ +DGLVHISQ+ ERV SD + G Sbjct: 610 RIEEITSDVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQICEERVNNVSDHLTMGQ 669 Query: 669 TVWVKLLDFDDRGKIKLSM 687 V VK+++ D +G+I+LSM Sbjct: 670 EVDVKVIEVDRQGRIRLSM 688 >gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/679 (50%), Positives = 471/679 (69%), Gaps = 12/679 (1%) Query: 18 LETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76 LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIPGG Sbjct: 17 LETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLSVHYQEKTYAAGKIPGG 76 Query: 77 YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 + +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ SA Sbjct: 77 FFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSA 136 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA + Sbjct: 137 ALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKE 196 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249 L+ED +L A++F H+E + VI AI +LA AK +P + + E I Sbjct: 197 LTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDAIS 256 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR +++ Sbjct: 257 QAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENIVN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L G Sbjct: 313 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VSEI Sbjct: 373 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEI 432 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 TES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG M Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDM 492 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 493 DFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSAN 552 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR+ Sbjct: 553 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQR 612 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG+ Sbjct: 613 VLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGEE 672 Query: 670 VWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 673 VEVLVLDVDNRGRIKLSIK 691 >gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii ATCC BAA-894] gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894] Length = 690 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/681 (49%), Positives = 468/681 (68%), Gaps = 13/681 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQDFFPLT+NYQERTYA G+IPGG+ RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP DE + S LDL V+GT+ AVLMVE EA LSED +L Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256 A++FGH + + VI+ I+ L K K +P + L + + + L + Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LNARVKALAESRLSDAY 237 Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 I +K R QID +K +++ +E + + +E E+ + I+ VVR+ +L + R Sbjct: 238 RITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPR 297 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373 +DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + + Sbjct: 298 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDR 357 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+ Sbjct: 358 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESN 417 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493 GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+G++F++LSDI GDEDHLG MDFKV Sbjct: 418 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKV 477 Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553 AG+ GITA+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + +F PR+ Sbjct: 478 AGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRI 537 Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613 + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I I Sbjct: 538 HTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEI 597 Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK Sbjct: 598 TAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 657 Query: 674 LLDFDDRGKIKLSMKVVDQNT 694 +L+ D +G+++LS+K + T Sbjct: 658 VLEVDRQGRVRLSIKEATEQT 678 >gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha JMP134] gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha JMP134] Length = 728 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/704 (48%), Positives = 480/704 (68%), Gaps = 10/704 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + +W +++ETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKVVKQFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+ Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++ ASAAL +SG+PF GPV A++ Y +GQY+LNP R LDL V+ Sbjct: 123 NPEIPADIPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EANQLSEDV+L A+++GH + + I AI L + K P + Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 +K+ E +++E ++ +K R +++ ++ + + + ++ E+ ++ Sbjct: 243 ALIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVSANVTAALAEAGVDADKVEVGNI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 D++AK+VR +L + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TL Sbjct: 299 MFDLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DEQ +D+L+G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F Sbjct: 419 KDDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGA 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + +R +L PR+ M I PD+IR VIG GG I+ + ++TG ++I +DGT+ Sbjct: 539 MQGAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS+S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS++ Sbjct: 599 IASTSTDGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 ERV D +KEG + VKL+ D++G+++LS+K G I Sbjct: 659 ERVKDIKDWLKEGQQLRVKLIQADEKGRLRLSLKAALAEEGGSI 702 >gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2] gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2] Length = 709 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/678 (49%), Positives = 468/678 (69%), Gaps = 5/678 (0%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG IARQ+D AVLA+ G+T VL TVV + GQDFFPLTVNYQER YA G+IPG Sbjct: 15 VTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQERMYAAGRIPG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE RP++ E LI+R+IDR IRPLF + NE QVI V+ + E P +V+++ S Sbjct: 75 GFLKREGRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEIQPDIVTLIGTS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL +SG+PF GPV ++V YINGQYVLNP + E ++ LDL V+GT++AVLMVE EAN Sbjct: 135 AALAISGIPFNGPVGASRVGYINGQYVLNPSVKELEESQLDLVVAGTENAVLMVESEANI 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLR 253 LSEDV+L A+++GH + + +I A+++ K + + + L +++ + + + Sbjct: 195 LSEDVMLGAVMYGHEQMQSIITAVAEFKAEAGKPTWNWSAPEKNVDLATQIANIAEAKIG 254 Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + I +K R + K ++V ++ E S ++ E+ +F ++ +VR ++ Sbjct: 255 AAYLITDKVARKDALSAAKAEVVETLTAQLAEGESLDKNEVGDLFGSLEKTIVRGRIIAG 314 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 + R+DGR+ + +R + G+L RTHGS++F RG+TQA+V TLGT D Q +D+LSGT Sbjct: 315 EKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMLDALSGTS 374 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 + FM+HYNF P GE +G+P RREIGHG LA+R I V+P +FPY++R+VSEIT Sbjct: 375 NSRFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPSLTEFPYSIRVVSEIT 434 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMA+VCG+SLALM+AGVP+ VAGIAMGLVK+ ++F++LSDI GDEDHLG MD Sbjct: 435 ESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKENENFVVLSDILGDEDHLGDMD 494 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT +GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S + +L EF Sbjct: 495 FKVAGTSNGITALQMDIKIEGITREIMQIALNQAKAARLHILGVMDQAISAPQAELSEFA 554 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ M IPP +I VIG GG IR + E+TG + I+DDGT+KIA+++ +AA I Sbjct: 555 PRIYTMNIPPKKIAEVIGKGGATIRALTEETGTTIEIEDDGTIKIAATNGDSAKAAIARI 614 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +T EV IY G+VV+++DFGAFV+ +DGLVHISQ+ ERV +D + G V Sbjct: 615 EQLTAELEVGTIYTGKVVRLVDFGAFVNVLPGKDGLVHISQICEERVNNVADHLSIGQEV 674 Query: 671 WVKLLDFDDRGKIKLSMK 688 VK+++ D +G+++LS+K Sbjct: 675 KVKVVEVDRQGRVRLSIK 692 >gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 701 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N] gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N] Length = 718 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/697 (47%), Positives = 486/697 (69%), Gaps = 7/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V Y+ GQY+LNP + + S +DL V+ Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238 GT++AVLMVE EA QLSE+++L ++FGH + + I AI L + K E + Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293 L ++ +E L + I EK R ++ ++ ++ + + + ++ + + + Sbjct: 241 ALIAAVTAAAQEGLSAAYQIREKQARTTKLREVYAEVSAKLAEQAAAAGQDAPDGVTVDN 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT++DEQ +D+L G R+ FM+HYN P ATGE R+G P RREIGHGRLA+R++ PVL Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P+ F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVPI+ VAG+AMGL+ + F Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHIL Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDGT+ Sbjct: 541 KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS + + A+ I +T EV ++Y G V++++DFGA V RDGL+HIS+++ Sbjct: 601 VIASVDEGQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R+A +DV+K G V VK+++ D++G+++LS+K + Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADEKGRLRLSVKAI 697 >gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae B728a] gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 701 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM 2581] gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM 2581] Length = 710 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/684 (49%), Positives = 468/684 (68%), Gaps = 4/684 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E+ + LETGRIARQ+ GAV+ T +TVVL TVV + + Q FFPL+V+YQE+TY Sbjct: 8 FEYGRSTVTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI V+ D P + Sbjct: 68 AVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +M+ SAAL +SG+PF GP+ A+V + Y LNP ++E S L++ V+GT+ AVL Sbjct: 128 AAMIGTSAALAISGVPFNGPIGAARVGFTEEHGYFLNPSVEELASSELNMVVAGTEKAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMS 245 MVE EAN+L ED +L A+++GH E + I AI +LA K + + + L++ M+ Sbjct: 188 MVESEANELLEDEMLGAVLYGHQEMQVAINAIQELAAEAGKPRWDWQAPAENTALKDAMA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQAKVVR 304 + + + I +K R + LK + V + E ++ E+ F ++ +VVR Sbjct: 248 SGFEAKVGEAYRITDKMQRQDALAALKDEAVEQLAGEEDGKFDADEVKGAFASLEKRVVR 307 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + ++ + R+DGRD +TVR + +VG L +THGS++F RG+TQA+VV TLGT D Q ++ Sbjct: 308 SRVVKGEPRIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTLRDAQLIE 367 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 SL G +++ F++HYNF P GE MG P RREIGHGRLARR + +LP +FPYT+R Sbjct: 368 SLEGERKDRFLLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGVEAMLPSEDEFPYTIR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVKD D F +L+DI GDED Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDEDGFAVLTDILGDED 487 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAG+ G+TA+QMD+KI GI+E IM ALQQA RLHIL +M+ V+ +SR Sbjct: 488 HLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMEQALQQAHEARLHILEQMNTVIGQSRE 547 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ E P + + I P++IR+VIG GG +IR I E TGA +++DDDGTV+I + + + Sbjct: 548 EVSENAPSMATIKIDPEKIRDVIGKGGAMIRKICEDTGASIDLDDDGTVRIYAEEKSAAK 607 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AA + + +IT VPE+ K+Y+G+VV++ DFGAFV+ DGLVHISQ+ ERV D + Sbjct: 608 AAIDTVLAITAVPEIGKLYRGKVVRIADFGAFVNIIPGTDGLVHISQIVPERVNDVRDYL 667 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 EGD VK+LD D+R ++KL++K Sbjct: 668 NEGDEPIVKVLDIDNRNRVKLTIK 691 >gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf-5] gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens Pf-5] Length = 703 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/679 (49%), Positives = 474/679 (69%), Gaps = 6/679 (0%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ SLD+ V+GT++AVLMVE EA Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTEEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEEEMSQMIK 249 +L+ED +L A++F H+E + VI+A+ +LA AK D + + ++L + Sbjct: 195 KELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWDWDWAAAPEATELLGAIRAEFG 254 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 E + + I K R ++ +LK ++V+ S E + ++ + F +I+ + VR +++ Sbjct: 255 EAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENIVN 314 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L G Sbjct: 315 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 374 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VSEI Sbjct: 375 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVSEI 434 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 TES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHLG M Sbjct: 435 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDM 494 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 495 DFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSAN 554 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR+ Sbjct: 555 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQR 614 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 615 VLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQE 674 Query: 670 VWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 675 VEVLVLDVDNRGRIKLSIK 693 >gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] Length = 720 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 485/697 (69%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella frigidimarina NCIMB 400] gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina NCIMB 400] Length = 698 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/689 (50%), Positives = 478/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + +DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P +V Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIV 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YIN +YVLNP +D+ SL+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAGTKAAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242 E EA L+E+++L A+ +GH++ + V++AI++ K A +P V D +K++E Sbjct: 189 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 247 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + E ++ K R Q+ +K + +E+ + E+ ++ ++ V Sbjct: 248 LAEAGMTEAYQIEV----KQDRYVQVGIVKAAAKAALVAENPDVDTREVDNLLGSLEKSV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ K R+DGR+ + +R +S G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R ++ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + PR+ + I P++IR+VIG GG VIR + E+TG + +DD+GTVKIASS+ Sbjct: 544 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -EATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLEMNQEVAVKVMEVDRQGRVRLSIK 689 >gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae BGR1] gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae BGR1] Length = 709 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/707 (48%), Positives = 482/707 (68%), Gaps = 19/707 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ E +W ++LETG IARQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++ ASAAL +SGLPF GPV A+V YI+ QYVLNP D+ + S LDL V+ Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA+QL EDV+L A++FGH + + I+AI +L + K D+ Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKP-----EWDWQP 237 Query: 240 LEEEMSQMIKEDLRVSCFIPEKY-VRCKQIDDLKKKMVSYFSSEHSSWNEGE-------- 290 ++ + + + Y +R KQ K K V +S Sbjct: 238 APKDEALIANVTAAAQADLLAAYQIRDKQARSAKLKEVYASTSAKLEAEAAAAGTTAADK 297 Query: 291 --IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 + ++ DI+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA Sbjct: 298 ATVGNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 357 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT+ DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA Sbjct: 358 LVVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + LP +F Y++R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAGIAMGL+ Sbjct: 418 LVACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 477 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + + F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GR Sbjct: 478 EDNKFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGR 537 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL +M + +S + L EF PR+ + I P++IR+VIG GG VIR + E+TG ++I Sbjct: 538 MHILGKMKESVSGANTTLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDIS 597 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDG V IAS+S + A++ I IT EV ++Y+G V+K++DFGA V+ +DGL+H Sbjct: 598 DDGVVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLH 657 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQN 693 IS++ ERV +D +KEG V +K++ D++G+++LS K + +QN Sbjct: 658 ISEIVNERVKDINDYLKEGQVVKIKVIQVDEKGRVRLSAKALLNEQN 704 >gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR51-B] gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR51-B] Length = 717 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/694 (49%), Positives = 475/694 (68%), Gaps = 12/694 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 +V + ++ G + LETGRIARQ+ GAV+ T G+T VL TVV RS++ GQDFFPL V Sbjct: 1 MNVVSKSFQYGGHEVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y E+TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF + NE QV+ VM Sbjct: 61 HYIEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAG 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVS 179 E P + +M+ SAAL +SG PF GP+ GA+V + + Y+LNP + S LD+ V+ Sbjct: 121 PEIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFTEAEGYLLNPTYSALKSSKLDMVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+DAVLMVE +A+QL+ED +L A++F H E + VI AI++L K + +D Sbjct: 181 GTKDAVLMVESQADQLTEDQMLGAVLFAHQEMQAVIHAINELVADAGKPRWEWQAPAVDE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 S +E E + E R++ EK R +++ +++ +V ++E + +I V Sbjct: 241 GLQSAVEAEAGAALGEAYRIT----EKAARYERVGEVRNAVVEKLAAEDGPTAD-DIKDV 295 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F+ ++ ++VR +LD + R+DGRD TVR I+ ++ +L + HGS+LF RG+TQAI +TL Sbjct: 296 FKGLEKRIVRQRILDGEPRIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITL 355 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G+ D Q +D+L G +R+ FM+HYNF P + GE R+G SRREIGHGRLARR + VLP Sbjct: 356 GSTRDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAAVLP 415 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSEITES+GSSSMA+VC SL LM AGVP+ PVAGIAMGLVK+G++F Sbjct: 416 TEEEFPYTIRVVSEITESNGSSSMASVCVGSLGLMAAGVPLKAPVAGIAMGLVKEGNNFA 475 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA + RLHIL + Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTASGVTALQMDIKIEGINEQIMEIALEQALQARLHILGQ 535 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M+ V+ R E P + + + D+IR++IG GG IR I E++GA V+I+DDGTVK Sbjct: 536 MNAVIDAPREITSENAPSMVALKVDSDKIRDIIGKGGATIRQITEESGATVDINDDGTVK 595 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + A +AA +MI IT EV +Y G V +++DFGAF+ +DGLVHISQ++ Sbjct: 596 VFGQTQAARDAAVDMIMEITAEAEVGAVYTGTVARIVDFGAFITILPGKDGLVHISQIAE 655 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ERV SD + EG+ V VK+LD D RG+IKLS+K Sbjct: 656 ERVENVSDYLTEGEEVRVKVLDVDQRGRIKLSIK 689 >gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 687 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/678 (49%), Positives = 466/678 (68%), Gaps = 10/678 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERTYA GKIPGG+ RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP +E + S LDL V+GT+ AVLMVE EA LSED +L Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256 A++FGH + + VI+ I+ L K K +P ++ L ++ + + L + Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LNARVAALAESRLSDAY 237 Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316 I +K R Q+D +K + ++ +E + + E+ + I+ VVR+ +L + R+DG Sbjct: 238 RITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297 Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376 R+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + F+ Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTDSFLF 357 Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436 HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+GSS Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417 Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496 SMA+VCG+SLALMDAGVP+ VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGS 477 Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556 GI+A+QMD+KI GI++ IM +AL AK RLHIL M + ++ R + EF PR+ + Sbjct: 478 RDGISALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 537 Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616 I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT Sbjct: 538 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAE 597 Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ Sbjct: 598 IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 657 Query: 677 FDDRGKIKLSMKVVDQNT 694 D +G+++LS+K + T Sbjct: 658 VDRQGRVRLSIKEATEQT 675 >gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii ATCC 27126] Length = 724 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/685 (48%), Positives = 465/685 (67%), Gaps = 2/685 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ AVLA+ +T VL TVV + K QDFFPLTVNYQE Sbjct: 26 TKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQE 85 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + +KNE QV++ VM + + Sbjct: 86 KAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIP 145 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184 ++SM+ SAAL +SG+PF GP+ A+V + NG+Y+LN R +E + LDL V+GT+ A Sbjct: 146 TDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTEGA 205 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 VLMVE EA+ LSED +L A++FGH + + V+ A+++ A E + + L+++ Sbjct: 206 VLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWAPEAENTALKDK 265 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + + ++ + I +K R + +K + +E ++ E++ + D+++ VV Sbjct: 266 VKALAEAEMTAAYQISDKLERKDAVTAATEKALEAILAEDEEQDKKEVLDLLHDLESDVV 325 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L R+DGRD +R + G+L RTHGS+LF RG+TQA+V TLGT D Q + Sbjct: 326 RSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQMI 385 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L G + + FM+HYNF P GE +G+P RREIGHGRLA+R I V+P +FPY + Sbjct: 386 DELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVV 445 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK D+F++LSDI GDE Sbjct: 446 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDE 505 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QAK RLHILN M + + R Sbjct: 506 DHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHR 565 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L EF PR+ M I D+IR+VIG GG +IR I E++ + I+DDGT+KI ++ A+ Sbjct: 566 EELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERAKA 625 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A I +T EV K Y G++ +++DFGAFV ++GLVHISQ++ ERV K +D Sbjct: 626 DIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVTDY 685 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 ++EG V VK+++ D + +++LS+K Sbjct: 686 LEEGQMVDVKVMEIDRQNRVRLSIK 710 >gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis IP 32953] gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis PB1/+] gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+] Length = 704 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690 >gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] Length = 720 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 485/697 (69%), Gaps = 2/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697 >gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] Length = 720 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAV+ + +TVVLATVV + K GQ FFPLT Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V YI+GQY +NP + + S LDL V+ Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA+QLSE+++L +++GH + + VI AI +L K K D + +K Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDAGKPDW--DWQAPAK 238 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E ++ + +E L + I EK R ++ ++ + + ++ + E +V Sbjct: 239 DEALIAAVTAAAQEGLNAAYQIREKQARTTKLREVSADVSAKLAAAAAEKGEALPDAVTV 298 Query: 297 D-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 D +++ +VR +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV Sbjct: 299 DNIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ +D+L G R+ FMMHYN P ATGE R+G P RREIGHGRLA+R++ P Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIP 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+ DG Sbjct: 419 LLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGG 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDG Sbjct: 539 LGKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+ IAS A+ + A+ I +T EV +IY+G V++++DFGA V RDGL+HIS+ Sbjct: 599 TIVIASVDEAQAKEAQRRIVELTADVEVGQIYEGAVLRLLDFGAIVQVLPGRDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 659 IANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697 >gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + VR + Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S EAAR Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V ++D D+RG+IKLS+K Sbjct: 671 QEVEVLVMDVDNRGRIKLSIK 691 >gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] Length = 769 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/698 (48%), Positives = 482/698 (69%), Gaps = 14/698 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T +W + +ETG IARQS GAV+ + +TVVLATVV K GQDFFPLT Sbjct: 3 MFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+ Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP---RLDEDQGSLDLF 177 + E + +M+A SAAL +SG+PF GP+ A+V Y+NG+YVLNP +L + Q +DL Sbjct: 123 NPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQ--MDLV 180 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232 V+GT+ AVLMVE EA LSE+V+L A++FGH++ K I AI++L + K +P Sbjct: 181 VAGTEAAVLMVESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAK 240 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D +K+ + + +E LR + I K R + + + + E +++ + Sbjct: 241 DEAFIAKV----TALAEEPLRAAYQIRSKQARTQATRAVGASVQAALKEEGVAFDPVAVD 296 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 ++ +I+A++VR +L + R+DGRD+ TVR I + +L RTHGS+LF RG+TQA+V Sbjct: 297 NLLFEIEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAA 356 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D+L+G + FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ V Sbjct: 357 TLGTERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAV 416 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPYT+R+VSEITES+GSSSMA+VCG L+L+DAGVP+ VAGIAMGL+K+G+ Sbjct: 417 LPNKDEFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNR 476 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +L+DI GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK RLHIL Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHIL 536 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M + + ++ ++ +F PR+ M I P++IR+VIG GG IR + ++TG ++I +DGT Sbjct: 537 GKMVEAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGT 596 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + IAS+ + A++ I IT E+ K+Y+G + K++DFGA V+ +DGL+HISQ+ Sbjct: 597 ITIASTDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQI 656 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + +RV K +D ++EG + VK+L+ D++G+IKLSMK + Sbjct: 657 AHQRVEKVTDFLEEGQVIKVKVLETDEKGRIKLSMKAL 694 >gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] Length = 720 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/699 (48%), Positives = 486/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAV+ + +TVVLATVV + K GQ FFPLT Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V YI+GQY LNP + + S LDL V+ Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA QLSE+++L +++GH + + VI AI +L K K D + +K Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPEW--DWQAPAK 238 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E ++ + +E L + I EK R ++ ++ + + ++ + E +V Sbjct: 239 DEALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESAPDAVTV 298 Query: 297 D-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 D +++ +VR +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV Sbjct: 299 DNIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ +D+L G R+ FMMHYN P ATGE R+G P RREIGHGRLA+R++ P Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIP 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+ DG Sbjct: 419 LLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGG 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDG Sbjct: 539 LTKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+ IAS A+ + A+ I +T EV ++Y+G V++++DFGA V RDGL+HIS+ Sbjct: 599 TIVIASVDEAQAKEAQRRIVELTADVEVGQMYEGSVLRLLDFGAIVQVLPGRDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 659 IANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697 >gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp. 1501(2011)] Length = 702 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/698 (49%), Positives = 475/698 (68%), Gaps = 7/698 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + E ++ + + +ETGRIARQ++ +VL G VL VV K+GQ+FFPLT Sbjct: 3 MFNTISREFQYGNQQVIIETGRIARQAN-SVLVHMGGVSVLVAVVVKSEAKEGQNFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+ V+ Sbjct: 62 VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + + +M+ ASAAL +S PF GPV GA+V +ING+YVLNP ++E + S LDL V+ Sbjct: 122 DKKHYADIAAMIGASAALAISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I +LAK E + + + Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAVGTEKQQFVAPELNA 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSV 294 +L+E+++ + + I +K R +++D++K + + + S E +I + Sbjct: 242 ELKEKVTTQFGSQVADAYSISDKQARYEKLDEIKAAAIEALAGDPESEEFSEKESQIKEI 301 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + D++ + VR +L K R+DGRD +TVR + QVG+L THGS+LF RG+TQA+V TL Sbjct: 302 YNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 361 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D +DSL+GT ++ FM+HYNF + GE R G P RREIGHGRLARR + +LP Sbjct: 362 GNSRDVNLIDSLAGTIQDHFMLHYNFPHFSVGETGREGVPKRREIGHGRLARRGVQAMLP 421 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+GD F Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFA 481 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKVAGT GITA+QMD+KI GI+ +IM AL++A GR+HILN Sbjct: 482 VLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITADIMEKALEKAHAGRIHILNA 541 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M++VL SR ++ P ++ I D+IR+VIG GG IR + E TGA ++IDD+GT++ Sbjct: 542 MNEVLPSSRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDDNGTIR 601 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I + A + A I ++T EV K+YKG V +V+DFGAFV DGLVHISQ+S Sbjct: 602 IFGENKAATKEAIRQIEALTAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHISQISD 661 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ERV SD + EG + V + D D+RG+IKL+MK V+Q Sbjct: 662 ERVENVSDYLSEGQEINVLVQDVDNRGRIKLTMKGVEQ 699 >gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella denitrificans OS217] gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans OS217] Length = 701 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/689 (49%), Positives = 480/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + +DFFPLTVNYQE+TYA Sbjct: 12 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 71 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 72 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+Y+LNP +D+ SL+L V+GT+ AVLMV Sbjct: 132 SMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLMV 191 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242 E EA L+E+++L A+ +GH++ + V++AI++ K A +P V D +K++E Sbjct: 192 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 250 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + ++ K R Q+ +K + +E+ + E+ ++ ++ V Sbjct: 251 LAEAGMTDAYQIEV----KQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLEKNV 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ ++ K R+DGR+ + +R ++ G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 307 VRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R ++ V+P +FPY+ Sbjct: 367 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYS 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 427 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + PR+ + I P++IR+VIG GG VIR + E+TG + +DDDGTVKIASS+ Sbjct: 547 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSNG-- 604 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV ++Y G+V++++DFGAF++ +DGLVHISQ+S ERVA Sbjct: 605 -EATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 664 VSDHLEMNQDVKVKVMEVDRQGRVRLSIK 692 >gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 698 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/689 (49%), Positives = 480/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + +DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF +KNE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+Y+LNP +D+ SL+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242 E EA L+E+++L A+ +GH++ + V++AI++ K A +P V D +K++E Sbjct: 189 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 247 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + ++ K R Q+ +K + +E+ + E+ ++ ++ V Sbjct: 248 LAEAGMTDAYQIEV----KQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLEKNV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ ++ K R+DGR+ + +R ++ G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 304 VRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R ++ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GD Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + PR+ + I P++IR+VIG GG VIR + E+TG + +DDDGTVKIASS+ Sbjct: 544 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV ++Y G+V++++DFGAF++ +DGLVHISQ+S ERVA Sbjct: 602 -EATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLEMNQDVKVKVMEVDRQGRVRLSIK 689 >gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides F] gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis IP 31758] gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola] gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis YPIII] gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92] gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides A] gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. India 195] gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27] gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003] gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92] gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Pestoides F] gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CA88-4125] gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola] gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis YPIII] gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. India 195] gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides A] gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038] gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27] gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003] gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 705 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690 >gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] Length = 686 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/668 (50%), Positives = 459/668 (68%), Gaps = 2/668 (0%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERTYA G+IPG + RRE Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP DE + SLDL V+GT AVLMVE EA+ LSED +L Sbjct: 122 IPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260 A++FGH + + VIE I+ L K + ++ L ++++ + L + I E Sbjct: 182 GAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHITE 241 Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320 K R Q+D +K +V ++ S + EI + ++ VVR+ +L + R+DGR+ + Sbjct: 242 KQERYAQVDAIKSSVVEALLAQDESLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREKD 301 Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380 +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + + F+ HYNF Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYNF 361 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P + GE +G+P RREIGHGRLA+R + ++P+ FPYT+R+VSEITES+GSSSMA+ Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMAS 421 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 VCG+SLALMDAGVPI VAGIAMGLVK+ D+F++LSDI GDEDHLG MDFKVAG+ GI Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDGI 481 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R + +F PR+ + I P Sbjct: 482 TALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRINP 541 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT EV Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEVG 601 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ D + Sbjct: 602 RIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661 Query: 681 GKIKLSMK 688 G+++LS+K Sbjct: 662 GRVRLSIK 669 >gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10] gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Microtus str. 91001] gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10] gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 737 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 40 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 99 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 100 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 159 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 160 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 219 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 220 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 279 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 280 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 339 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 340 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 399 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 400 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 459 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 460 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 519 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 520 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 579 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 580 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 639 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 640 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 699 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 700 MGQDVPVKVMEVDRQGRIRLSIK 722 >gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 722 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/702 (49%), Positives = 480/702 (68%), Gaps = 7/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +W + +ETG IARQ+ GAV+ +TVV+ TVV +S K GQ FFPLT Sbjct: 3 MFKKAVKSFQWGTYQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+++V+ Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + + + +++AASAAL +S +PF GPV A+V Y NGQY+LNP R ++ LDL V+ Sbjct: 123 NPDVPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ AVLMVE EANQLSE+V+L A+++GH++ + I AI+ L +C D K Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINDL--VCEAGKPEWDWTAAPK 240 Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E +++ + + LR + I +K R ++ ++ K++++ S E + + + Sbjct: 241 DEPFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKEVMAKLS-EEGDVDAVAVSDIMF 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+AK+VR+ +L+ + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 300 EIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +D L G R+ FM HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP Sbjct: 360 ARDEQIIDVLEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSA 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 F Y++R+VSEITES+GSSSMA+VCG LA+MDAGVP+ VAG+AMGL+ DG+ F +L Sbjct: 420 EDFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M Sbjct: 480 TDILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQ 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + R +L PR+ I PD+IR VIG GG I+ + ++TG ++I DDGTV IA Sbjct: 540 EAMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+S + A+ I IT EV KIY+G VVK+++FGA V+ +DGL+HIS++S ER Sbjct: 600 STSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 V + D + EG V VKLL D+RG+++LS+K + G I Sbjct: 660 VKEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTI 701 >gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis URRWXCal2] gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis URRWXCal2] Length = 747 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V + K+G FFPLT Sbjct: 1 MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYATGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ L+E+ +L+A+ FG +PVI+ I +LA+ K + + + Sbjct: 181 GTSDSVMMVESEAHLLAEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMTVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDG+V + + Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S V+K+GD V VKL+ FD++GK KL++K D++ Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696 >gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 701 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/701 (50%), Positives = 475/701 (67%), Gaps = 18/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V D+ +K GQDFFPLT Sbjct: 1 MFDKHIKTFQYGKHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y +G Y+LNP E ++ LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH + + VI AI++LA P V D K + Sbjct: 181 GTAKAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIAAINELADEV--NPEVWDWK-APE 237 Query: 240 LEEEMSQMIKEDLRVSCFIPEKY-VRCKQIDDLKKKMVSYFSSEHSSWNE-------GEI 291 EE+ ++E I E + +R KQ K ++ + E + NE EI Sbjct: 238 TNEELVAKVRE--IAGATIAEAFKIRSKQARSAKIAE-AWSAVEAALINEDTDTLAANEI 294 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +F+ ++A VVR +LD + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V Sbjct: 295 KGIFKHLEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIA 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP+ F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ + + Sbjct: 415 VLPEPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENN 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL+QAK RL+I Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLYI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + + + +L + PR+ M I PD+IR VIG GG+ IR I +TG ++NI+DDG Sbjct: 535 LAQMKEAVDGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETGTEINIEDDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649 TV IA+++ EAAR+ I IT EV KIY+G VVK++D GA V +DGLVHI Sbjct: 594 TVTIAATTSEAGEAARKRIEEITAEVEVGKIYEGTVVKILDNNVGAIVTVMPGKDGLVHI 653 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+++ ERV D ++ G TV VK L DDRG+++LSMK + Sbjct: 654 SEIAHERVKNVGDYLQVGQTVNVKALAVDDRGRVRLSMKAL 694 >gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica] gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica W22703] Length = 706 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LSMK Sbjct: 668 MGQEVPVKVIEVDRQGRIRLSMK 690 >gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter cryohalolentis K5] gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter cryohalolentis K5] Length = 700 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/700 (49%), Positives = 478/700 (68%), Gaps = 9/700 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + +ETGRIARQ++ ++ G TV++A VV + K+GQ+FFPLT Sbjct: 3 MFNTIKREFQYGNQQVVIETGRIARQANSILVHMGGVTVLVAAVVKSDA-KEGQNFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+ V+ Sbjct: 62 VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D S + +++ ASAAL +S PF GPV A+V +ING+YVLNP L+E + LDL V+ Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDF 237 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A AK+ ++ Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRN- 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293 LE M + + + I +K R ++D++K ++ + + S + + VS Sbjct: 241 QTLETGMKEQFGTQVSDAYTITDKQARYSKLDEIKDAALAALAGDAESESYADTVSELKE 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 ++ D++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+V T Sbjct: 301 IYNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D +DSL+GT R+ FM+HYNF + GE R G P RREIGHGRLARR + +L Sbjct: 361 LGNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAML 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI PVAGIAMGLVK+G+ F Sbjct: 421 PDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAG+ GITA+QMD+KI GI+ +IM AL+QA GR+HIL+ Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILD 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M+KVL ESR ++ P ++ I PD+IR+VIG GG IR + E+TGA ++IDD GT+ Sbjct: 541 AMNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTI 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 +I + A +AA I +IT EV K Y+G V +++DFGAF++ DGLVHISQ++ Sbjct: 601 RIFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFINVLPNTDGLVHISQIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ERV SD +KEG V V + D D+RG+IKL+MK ++Q+ Sbjct: 661 DERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700 >gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Antiqua] gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua] Length = 731 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 34 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 93 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 94 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 153 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 154 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 213 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 214 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 273 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 274 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 333 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 334 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 393 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 394 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 453 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 454 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 513 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 514 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 573 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 574 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 633 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 634 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 693 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 694 MGQDVPVKVMEVDRQGRIRLSIK 716 >gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] Length = 719 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/693 (48%), Positives = 481/693 (69%), Gaps = 4/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +W + +ETG IARQ+ GAVL +TVVLATVV R+ K GQDFFPLT Sbjct: 1 MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+ENE LISR+IDR IRPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++A SAAL +SGLPF GPV A+V Y+NG YVLNP R + L+L V+ Sbjct: 121 NPEVEADIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GT+ AVLMVE EA+QLSE+V+L+A++FGH + + I AI +L + K KD Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKD- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L + + + +D+R + I +K R + + + K+ + + + + ++ + D Sbjct: 240 QALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGVAADAAKVDGILFD 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VR +L + R+DGRD+ TVR +S + +L RTHGS+LF RG+TQA+ V TLGT Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +D Q +D+L G R+ F++HYN P ATGE R+G P RREIGHGRLA+RA+ VLP+ Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F YT+R+VSE+TES+GSSSMA+VCG LAL+DAGVP+ VAGIAMGL+K+G+ F +L+ Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+ IM +AL QA+ R+HIL M + Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + +R ++ +F PR+ + I P++IR+VIG GG IR + E+TG ++NI +DGT+ IAS Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + A++ I +T EV ++Y G VVK++DFGA V+ +DGL+HISQ++ ER+ Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K SD ++EG V VK+++ DD+G+ +LS+K + Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692 >gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC7] Length = 696 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/701 (49%), Positives = 479/701 (68%), Gaps = 14/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ K+ V I+ Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291 + ++L+E+ + + E ++ K R ++D+L + + E S + +I Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+G Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +S ERV SD +KEG TV V++ D D+RG+IKL+MK V+Q Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696 >gi|119477397|ref|ZP_01617588.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2143] gi|119449323|gb|EAW30562.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2143] Length = 677 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/670 (49%), Positives = 463/670 (69%), Gaps = 14/670 (2%) Query: 32 LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91 + T G+ VL TVV +S K+G DFFPL V+YQE++YAVGKIPGG+ +RE+RP+E E L Sbjct: 1 MVTVGDVQVLCTVVGAKSAKEGMDFFPLGVHYQEKSYAVGKIPGGFFKREARPSEKETLT 60 Query: 92 SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151 SR+IDR +RPLF K +KNE QV+ VM D ++ P + +++ SAAL +SGLPF GPV Sbjct: 61 SRLIDRPMRPLFPKGFKNEVQVVCTVMSADHDTDPDIAALIGTSAALSISGLPFGGPVGA 120 Query: 152 AQVDYI--NGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGH 208 A+V + NG Y+LNP + GS LD+ V+GT DAVLMVE EA +LSED +L A++F H Sbjct: 121 ARVGFTADNG-YILNPSYSQLAGSALDMVVAGTSDAVLMVESEAQELSEDQMLGAVLFAH 179 Query: 209 NECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263 E + VI+ I +LA K +P ++ + + Q I + R++ +K Sbjct: 180 QEMQTVIKVIGELASEAGKPSWNWQPEEENTALLAAVANGYKQGIGDAYRIT----DKAD 235 Query: 264 RCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV 322 R ++ +LK + + + +E + + G++ VF ++ VR +L+ + R+DGRD+ TV Sbjct: 236 RYSKVGELKTQAIEQLAKAEGAEYGAGDVSGVFSKLEKSTVRQRILNGEPRIDGRDNNTV 295 Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382 R I A+VG+L + HGS+LF RG+TQAI V TLGT D Q +D+L G + ++FM+HYNF P Sbjct: 296 RPIQAEVGVLAKAHGSALFTRGETQAIGVTTLGTTRDAQLIDALEGKREDNFMLHYNFPP 355 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 + GE R+G SRRE+GHGRLARR + VLP FPYT+R+V+EITES+GSSSMA+ C Sbjct: 356 YSVGECGRIGFTSRREVGHGRLARRGVAAVLPNPEDFPYTIRVVAEITESNGSSSMASAC 415 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502 +S+++M+AGVP+ PVAGIAMGL+K+G+ F +L+DI GDEDHLG MDFKVAGT +G+TA Sbjct: 416 VASMSMMEAGVPLKAPVAGIAMGLIKEGERFAVLTDILGDEDHLGDMDFKVAGTANGVTA 475 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +QMD+KI GI+E IM +AL+QA RLHIL +M+ V+SESR + + P + I D+ Sbjct: 476 LQMDIKIEGINEQIMSIALEQALTARLHILGQMNAVISESRSAVSDNAPSMATFKIDSDK 535 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 IR+VIG GG IR I E+TGA V+IDDDGT++I S A +AA + IT EV I Sbjct: 536 IRDVIGKGGATIRSITEETGATVDIDDDGTIRIYGSDAASRDAAVAKVEEITAEAEVGAI 595 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 Y+G V +++DFGAFV+ +DGLVHISQ+S ERV K +D + EG + VK+LD D RG+ Sbjct: 596 YEGTVARIVDFGAFVNILPGKDGLVHISQISNERVEKVTDYLAEGQVIKVKVLDVDQRGR 655 Query: 683 IKLSMKVVDQ 692 IKLSMK +++ Sbjct: 656 IKLSMKEMEE 665 >gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36] gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36] Length = 705 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/687 (49%), Positives = 473/687 (68%), Gaps = 12/687 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG IARQ+ AV+A+ G+T VL +VV + + G+DFFPLTVNYQERTY Sbjct: 8 FKYGQHTVTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVNYQERTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E E L R+IDR IRPLF +KNE QV+ V+ + E P + Sbjct: 68 AAGKIPGGFFKREGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNPEIQPDL 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+++ SAAL +SG+PF GP+ A++ + N +Y+LNP E + LDL V+GT++AVLM Sbjct: 128 VALIGVSAALSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLDLVVAGTENAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA------KMCAKEPIVIDSKDFSKLE 241 VE EA LSE+ +L A+++GH + + VIEAI + A K P+V ++L+ Sbjct: 188 VESEAEILSEEQMLGAVMYGHEQMQVVIEAIKEFAAEVNTPKWDWTAPVV-----NTELK 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +++++ DL + I EK R ++ +K +++ E++ N E + ++ Sbjct: 243 AKIAELASGDLAEAYQIQEKTERYAKVGGIKSAVIAKLQEENAELNTREAGELLASLEKN 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR +LD + R+DGRD E +R +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 303 IVRNRILDGEPRIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL+G + F+MHYNF P GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 363 RIDSLTGETIDRFLMHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNADEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLV DGD +ILSDI G Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDRSVILSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ +GITA+QMD+KI GI+++IM AL QAK RLHIL+ M + ++ Sbjct: 483 DEDHLGDMDFKVAGSSAGITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQAIAT 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 +R + EF PR+ + I D+I+++IG GG IR + E+TG + I+DDGTVKIA++S Sbjct: 543 NRDDVSEFAPRIHTIKISTDKIKDIIGKGGATIRALTEETGTTIEIEDDGTVKIAATSNE 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + +AA E I +T EV +IY+G+VV++ DFGAFV+ +DGLVHISQ++ ERV K + Sbjct: 603 QAQAAIERIHQLTAEVEVGQIYEGKVVRLADFGAFVNILPGKDGLVHISQITQERVNKVA 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D + V VK+L+ D +G+I+LS+K Sbjct: 663 DHLSVEQVVKVKVLEVDRQGRIRLSIK 689 >gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 7169] gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC1] gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis CO72] gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis O35E] Length = 695 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/700 (50%), Positives = 479/700 (68%), Gaps = 14/700 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIV---IDS 234 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ AK+ V I+ Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNAKQEFVAPAINE 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291 + ++L+E+ + + E ++ K R ++D+L + + E S + +I Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+G Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +S ERV SD +KEG TV V++ D D+RG+IKL+MK V+ Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695 >gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2] Length = 703 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/690 (47%), Positives = 470/690 (68%), Gaps = 12/690 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ AV+A+ +T VL TVV + K QDFFPLTVNYQE Sbjct: 5 TKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV+I VM + + Sbjct: 65 KTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDIP 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++SM+ SAAL +SG+PF GP+ A+V Y +G+Y+LN R++E S LDL V+GT+ A Sbjct: 125 TDIISMIGTSAALAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLDLVVAGTEGA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------S 238 VLMVE EA+ LSEDV+L A++FGH + + V+ A+ + A + ID D+ + Sbjct: 185 VLMVESEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAANVS-----IDKWDWKPEAENT 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L++++ + + ++ + I +K R + +K +E + ++ E+ ++ D+ Sbjct: 240 TLKDKVKALAEAEMVAAYQISDKLARKDAVTAATEKARDAILAEDETQDKKEVSNLLHDL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++ VVR+ +L + R+DGRD + +R + G+L RTHGS++F RG+TQAIV TLGT Sbjct: 300 ESDVVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTER 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G + + FM+HYNF P GE +G+P RREIGHGRLA+R I V+P + Sbjct: 360 DAQMIDELQGRRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +RIVSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK ++F++LSD Sbjct: 420 FPYVVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QAK RLHILN M + Sbjct: 480 ILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEA 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + R +L EF PR+ + + D+IR+VIG GG +IR I E++ + I+DDGT+KI ++ Sbjct: 540 IGGHREELSEFAPRIYTVKVDQDKIRDVIGKGGAMIRSITEESDTNIEIEDDGTIKIFAT 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A+ + A I +T EV K Y G++ +++DFGAFV ++GLVHISQ++ ERV Sbjct: 600 ERAKADIAISKIEQVTAEIEVGKTYHGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVN 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +D + EG + VK+++ D + +++LS+K Sbjct: 660 KVTDYLTEGAMIDVKVMEIDRQNRVRLSIK 689 >gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii 37] gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii 37] Length = 698 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/688 (48%), Positives = 473/688 (68%), Gaps = 2/688 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETG +ARQ+ AV+ + +T V +VV + +DFFPLTVNYQE+TY Sbjct: 8 FQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+ +RE RP+E+E LI+R+IDR +RPLF +KNE QVI V+ + E +P V Sbjct: 68 AAGKIPGGFFKREGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEVNPDV 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V+M+A SAAL +SG+PF+GP+ A+V Y G+Y+LNP E + S L+L VSGT +AVLM Sbjct: 128 VAMIATSAALSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLNLVVSGTDNAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EA LSEDV+L A++FGH++ + V+E+I + A A+ + ++ L+ ++ Sbjct: 188 VESEAGILSEDVMLGAVVFGHDQQQIVVESIKEFAAEVARPAWNWAAPARNEALDAAIAT 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + I +K R I + ++ + + +I D++ VVRT Sbjct: 248 EAQARFEQAYQISDKGDRYDAIKAITSEVKEKLLASDETLEAKQIGEYLHDLEKTVVRTR 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++ + R+DGRD E++R + + G+L RTHGS+LF RG+TQA+V TLGT+ D Q +DS+ Sbjct: 308 IIKGEPRIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSI 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G ++++F++HYNF P GE +G+P RREIGHGRLA+R + V+P +FPYT+R+V Sbjct: 368 MGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEFPYTVRVV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVP+ VAGIAMGLVK+G++F++LSDI GDEDHL Sbjct: 428 SEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSDILGDEDHL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GITA+QMD+KI GI+ IM +AL QAK RLHIL M + L + R + Sbjct: 488 GDMDFKVAGTTEGITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQALPQGRADI 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 +F PR+ + I D+IR+VIG GG VIR + E+TG + I+DDGTVKIA++S + + A Sbjct: 548 SQFAPRIHTIKINTDKIRDVIGKGGAVIRSLCEETGTTIEIEDDGTVKIAATSGEQADDA 607 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 I+++T EV IY G+VV++ DFGAFV+ +DGLVHISQ+ ERV K SD +KE Sbjct: 608 INRIKALTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVSDHLKE 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 G V VK+L+ D +G+++LS+K + T Sbjct: 668 GQEVKVKVLEVDRQGRVRLSIKEAAEKT 695 >gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 748 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V + K+G FFPLT Sbjct: 1 MFNEITKSVTWDGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ ++++ I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + EV M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVC SSLALM AGVPI PVAGIAMGL+K+G F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDG+V + + Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S V+K+GD V VKL+ FD++GK KL++K D++ Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNTDKD 696 >gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC 33638] gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC 33638] Length = 706 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/683 (48%), Positives = 465/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690 >gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] Length = 705 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/683 (48%), Positives = 466/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASA L LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690 >gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] Length = 701 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/688 (51%), Positives = 476/688 (69%), Gaps = 13/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L +ETG IARQ+ GAVL + +TVVL TVV + K QDFFPLTV+YQE+TY Sbjct: 8 IAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTVDYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + +RE R +E EIL SR+IDR +RPLF + + NE Q+I VM D E + Sbjct: 68 AAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSDSEIDSDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 S++ ASAAL +SG+PFEGP+ A+V Y NGQY+LNP E S +DL V+GT AVLM Sbjct: 128 PSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE---EM 244 VE EA QLSE+V+L A++FGH + + VI AI+++A+ K + D +K E ++ Sbjct: 188 VESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKP--MWDWTPPAKNEALIAQI 245 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKV 302 +++ + +L+ + I K R I + K+++ S E ++ NE +F ++AK+ Sbjct: 246 AELAEAELQAAYAIRSKQERTDAISAIHSKVLASVSPDLEKNAVNE-----LFGALEAKI 300 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR +L + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLG+ D Q Sbjct: 301 VRGQILSGEPRIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQK 360 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 VD+L G + FM+HYNF P ATGE R+G+P RREIGHGRLA+RA+ VLP F Y Sbjct: 361 VDALQGEFTDRFMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYA 420 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSEITES+GSSSMA+VCG L+++DAGVP+ VAGIAMGL+K+G+ F +LSDI GD Sbjct: 421 VRIVSEITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSDILGD 480 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAG+++GITA+QMD+KI GI+ IM AL QAK GRLHIL M + +S Sbjct: 481 EDHLGDMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGV 540 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L EF PR+ M I P++IR+VIG GG VIR + E+TG ++IDD G + I+S + Sbjct: 541 RSELSEFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDAGNITISSVNGEA 600 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E A++ I I EV KIY+G VVK++DFGA ++ +DGL+HISQ++ ERV D Sbjct: 601 GELAKKRIEDIAMDVEVGKIYEGPVVKLLDFGALINILPGKDGLLHISQIAHERVNSVGD 660 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +KEG V VKLL+ DDRG++KLSMK + Sbjct: 661 YLKEGQVVRVKLLEMDDRGRMKLSMKAL 688 >gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR5-3] gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR5-3] Length = 704 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/690 (49%), Positives = 472/690 (68%), Gaps = 12/690 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ G+ + LETGRIARQ+ GAVL T T VL TVV +++ ++G+DFFPL V+Y E Sbjct: 5 TKTFQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF + NE QVI VM D Sbjct: 65 KAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSADKHID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQD 183 P + +M+ SAAL +SG PF GP+ A+V + + + Y+LNP D+ GS L++ V+GT+D Sbjct: 125 PDIPAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKLEMVVAGTED 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238 AVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA K E ID Sbjct: 185 AVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWNWEAPAIDEALLG 244 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +E M+K+DL + I +K R ++ ++++ V+ ++E + + F+ + Sbjct: 245 AVE----GMVKDDLGEAYRITDKSERYARVGEIREACVAELATEGGPSAD-LVKEYFKKV 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI VTLG+ Sbjct: 300 EKSMVRKRIIAGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTR 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L G +R+ FM+HYNF P + GE R+G SRREIGHGRLARR + VLP + Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VC SLA+M AGVP+ PVAGIAMGLVK+G+ F +L+D Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V Sbjct: 480 ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+ R E P + + + D+IR++IG GG +IR I E +GA V+I+DDGTV++ Sbjct: 540 LAAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGTVRVFGQ 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A + A MI IT EV IY G+V +++DFGAFV+ +DGL+HISQ++ ERV Sbjct: 600 DQASRDKAVAMIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERVE 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD + EG V VK+LD D RG+IKLS+K Sbjct: 660 NVSDHLSEGQEVRVKVLDVDQRGRIKLSIK 689 >gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii ATCC 33641] gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii ATCC 33641] Length = 706 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/687 (48%), Positives = 468/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA+ LSED +L A++FGH + + VIE I+ L K +P V++ +++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEALHARVA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + + R++ EK R Q+D +K + ++ + + EI + ++ Sbjct: 248 ELAEVRLGDAYRIT----EKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKD 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPY Sbjct: 364 NIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPSEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 484 DEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ Sbjct: 544 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+++ D +G+I+LS+K Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRIRLSIK 690 >gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea ATCC 19718] gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein [Nitrosomonas europaea ATCC 19718] Length = 708 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/696 (48%), Positives = 477/696 (68%), Gaps = 17/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L +ETG IA+Q+ GAV+ + +TVVL T V D+ K GQDFFPLTV+YQE+ Y Sbjct: 8 ITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQEKFY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 + G+IPG + +RE RP+E E L SR+IDR IRPLF + NE QV+ V+ D E + Sbjct: 68 SAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEIDADI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP---RLDEDQGSLDLFVSGTQDAV 185 +M+ SAAL+LSG+PF+GPV A+V YIN +Y+LNP +L E Q L+L V+GTQ AV Sbjct: 128 PAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQ--LNLVVAGTQKAV 185 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 LMVE EA++LSEDV+L A+ +GH++ + VI+ I++LA + + D+ E+++S Sbjct: 186 LMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAG-----VTAWDWQPAEQDLS 240 Query: 246 ------QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298 Q+ + DLR + + +K R + I+++ +++ + +E + + + Sbjct: 241 LVEKVTQLAEADLRNAFRLKQKSARVEAINEIWQRVFTELKVGTEEGPSEQAVREIGFAL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A++VR +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT Sbjct: 301 EARIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTAR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G FM+HYN P ATGE R+G P RREIGHGRLA+RA+ V+P + Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F Y++R+VSE+TES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+K+G+ F +L+D Sbjct: 421 FGYSMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL M + Sbjct: 481 ILGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQS 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L +R + PR+ I P++IR+VIG GG VIR + E+TG ++I DDG+V IA Sbjct: 541 LPIARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIACV 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S E AR+ I IT EV +IY+G V+K++DFGA V +DGL+HISQ++ ERV Sbjct: 601 SSEGGEQARKRIEDITADVEVGRIYEGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVE 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +D +KEG TV VK+L+ D++G+++LSMK +T Sbjct: 661 NVADHLKEGQTVRVKVLEADEKGRLRLSMKAASIST 696 >gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae MTU5] gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae MTU5] Length = 745 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L TVV K+G FFPLT Sbjct: 1 MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E +++++ ASAAL LS P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPEIPVDILAIIGASAALSLSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M PSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKVPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDGTV I + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICEISGAKIDISDDGTVSIYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704 >gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3] gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3] Length = 699 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/689 (49%), Positives = 479/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF + NE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + + S L+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAGTESAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242 E EA L E+V+L ++++GH++ + VI+AI++ K P+ ++ L Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ ++ L + I K R Q+ +K + + + E+ + ++ KV Sbjct: 244 QVKELAEDGLAQAYQIQVKQDRYAQVAVVKAAAKEALLAANPDVDLREVDGLLGSLEKKV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +A RE IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -DATREAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689 >gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7] gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7] Length = 699 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/689 (49%), Positives = 477/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF + NE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + S L+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242 E EA L E+V+L ++++GH++ + VI+AI++ K P+ ++ L Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ + L + I K R Q+ +K + + + E+ + ++ KV Sbjct: 244 QVKELAEAGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689 >gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis Et1/99] gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis Et1/99] Length = 710 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/687 (48%), Positives = 467/687 (67%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH++ + VI+ I+ L K +P ++ L Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I EK R Q+D +K + + +E + + EI + ++ Sbjct: 244 SRITALAESRLSDAYRITEKQERYAQVDVIKSETSAALLAEDEALDAAEISDLLHALEKD 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDENNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISG 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Nepal516] Length = 731 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/683 (48%), Positives = 466/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 34 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 93 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 94 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 153 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASA L LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 154 IVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 213 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSE+ +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 214 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 273 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 274 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 333 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 334 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 393 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 394 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 453 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 454 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 513 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ G+TA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 514 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 573 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 574 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 633 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 634 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 693 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 694 MGQDVPVKVMEVDRQGRIRLSIK 716 >gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter sulfurreducens PCA] gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens PCA] Length = 697 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 465/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V +S ++GQDFFPLTVNYQ Sbjct: 4 HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++ V+ D ++ Sbjct: 64 EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +++M+ ASAAL +S +PF GP+ G +V ++GQ+V NP +++ ++ L++ V+ ++D Sbjct: 124 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 AV+MVE A + SE VL+AI FGH +P+IEA + L K+ K + S D L+ Sbjct: 184 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVD-EALK 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + ++ + I K R +I ++ + + E+ E EI D + + Sbjct: 243 TRVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++ R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V TLGT DEQ Sbjct: 302 LVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G R F++HYNF P + GE S AP RREIGHG LA RA+ V+P+ FPY Sbjct: 362 RIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI PVAGIAMGL+K+G+ ILSDI G Sbjct: 422 TIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT++G+TA+QMD+KI G++ IM AL QA+ GRLHIL +M++ ++ Sbjct: 482 DEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAA 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R L + PR+ + + D+IR+VIG GGK IRGI E TG ++I+D G + IAS+S Sbjct: 542 PRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MIR +T E K+Y G V KVMDFGAFV DGLVHIS+L TERV + Sbjct: 602 ACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVT 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV+ EGD V VK + D +GKIKLS K Sbjct: 662 DVLNEGDKVLVKCIGIDKQGKIKLSRK 688 >gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis RH4] gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis RH4] Length = 696 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/694 (50%), Positives = 476/694 (68%), Gaps = 14/694 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLTVNYQE+ Sbjct: 8 EFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLTVNYQEKM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ D Sbjct: 67 YASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDAD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+GT+ AVL Sbjct: 127 IAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVAGTKSAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDSKDFSKLE 241 MVE EA +LSED +L A+++GH + + VI+ I+ A+ K+ V I+ + ++L+ Sbjct: 187 MVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINEELNTQLK 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298 E+ + + E ++ K R ++D+L + + E S + +I +FE + Sbjct: 247 EQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELFETL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV TLGT Sbjct: 303 KYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTR 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + +LP + Sbjct: 363 DVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAER 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LSD Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HILN M++V Sbjct: 483 ILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEV 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+GT++I + Sbjct: 543 IATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRIFGT 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ+S ERV Sbjct: 603 DKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDERVE 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SD +KEG TV V++ D D+RG+IKL+MK V+Q Sbjct: 663 NVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696 >gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2080] gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2080] Length = 714 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/694 (48%), Positives = 468/694 (67%), Gaps = 12/694 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETGRIARQ+ GAV+ T G T VL TVV R ++ GQDFFPL+V+Y E+ Y Sbjct: 8 FQYGDHEITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSVHYIEKRY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE+RP+E E L SR+IDR +RPLF + NE QV+ VM D E+ P + Sbjct: 68 AVGKIPGGFFKREARPSEKETLTSRLIDRPVRPLFPNGFMNEVQVVCTVMSADSETDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +M+ SAAL +SG PF GP+ GA+V + + Y+LNP + S LD+ V+GT +AVL Sbjct: 128 PAMIGTSAALAISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKNSQLDMVVAGTSEAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA +LSED +L A++F H E + VI+AIS+L + K +D + +E Sbjct: 188 MVESEAQELSEDQMLGAVLFAHQEMQTVIKAISELVEEAGKPRWDWTAAPVDEALKAAVE 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + E R++ EK R +++ +++ ++ + E + +I F+ ++ Sbjct: 248 GEAKSGLGEAYRIT----EKAARYERVGEVRDATIAALAVEGGPSKD-DIKDQFKALEKN 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++ + R+DGRD TVR I +V +L + HGS+LF RG+TQAI VTLG+ D Q Sbjct: 303 IVRQRIISGEPRIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSRDAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+L G +R+ FM+HYNF P + GE R+G SRREIGHGRLARR + LP +FPY Sbjct: 363 IIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAATLPTEEEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VC SLA+M AGVP+ PVAGIAMGLVK+G+ F +L+DI G Sbjct: 423 TVRVVSEITESNGSSSMASVCVGSLAMMAAGVPVKAPVAGIAMGLVKEGNQFAVLTDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT GITA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ VL+ Sbjct: 483 DEDHLGDMDFKVAGTSGGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQMNSVLAA 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + E P + + I D+IR++IG GG IR I E++GA V+I+DDGTVK+ + Sbjct: 543 PREIVSENAPSMVQLKIDSDKIRDIIGKGGATIRSITEESGATVDIEDDGTVKVFGVTKE 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A I +IT EV IY+G + +++DFGAFV +DGLVHISQ++ ERV + Sbjct: 603 SRDHAVNAIMAITAEAEVGAIYEGTIARIVDFGAFVTILPGKDGLVHISQIAEERVENVT 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 D +KEG+TV VK+LD D RG+IKLS+K V + G Sbjct: 663 DYLKEGETVRVKVLDVDQRGRIKLSIKEVAADEG 696 >gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica] Length = 711 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 13 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 72 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 73 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 132 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 133 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 192 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 193 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 252 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 253 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 312 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 313 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 372 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 373 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 432 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 433 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 492 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 493 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 552 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG ++I+ DGT+KIA++ + + Sbjct: 553 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAATDGDKAKH 612 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 613 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 672 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LSMK Sbjct: 673 MGQEVPVKVIEVDRQGRIRLSMK 695 >gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 706 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+R + V+P ++FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG ++I+ DGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EVN+IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LSMK Sbjct: 668 MGQEVPVKVIEVDRQGRIRLSMK 690 >gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus bovienii SS-2004] gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus bovienii SS-2004] Length = 714 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/687 (48%), Positives = 467/687 (67%), Gaps = 6/687 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ+ AV+ +T V TVV + +K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I V+ + +P Sbjct: 68 YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPLVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + S LDL V+GT AVL Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA L+E+ +L A++FGH + + VI+ I+ L KE + ++ L + ++ Sbjct: 188 MVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQPLHDRVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVSVFEDIQAK 301 ++ + L + I EK R Q++ +K+++ + +E + E++ V ++ Sbjct: 248 ELAESRLGDAYRITEKQERYAQVNTIKEEVSAIIVAEAVEKGVELEKSEVLDVLSVLEKN 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L + R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT D Q Sbjct: 308 VVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQ 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 368 VIDELMGERADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTANEFPY 427 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI G Sbjct: 428 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 487 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GI+A+QMD+KI GI+ IM +AL QAK RLHIL M + + Sbjct: 488 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARLHILGVMEQAIQS 547 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 548 PRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDSD 607 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 608 KAHHAIRRIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 667 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ V VK+L+ D +G+I+LSMK Sbjct: 668 DYLQLAQEVPVKVLEIDRQGRIRLSMK 694 >gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4] gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4] Length = 699 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/689 (49%), Positives = 477/689 (69%), Gaps = 18/689 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ + LETG IARQ+D AVLA+ G+T VL TVV + + G+DFFPLTVNYQE+TYA Sbjct: 9 EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF + NE QVII V+ D + P ++ Sbjct: 69 AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 SM+ SAAL +SG+PF GP+ A+V YING+YVLNP + + S L+L V+GT+ AVLMV Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242 E EA L E+V+L ++++GH++ + VI+AI++ K P+ ++ L Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ ++ + L + I K R Q+ +K + + + E+ + ++ KV Sbjct: 244 QVKELAEVGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + R+DGR+ + VR +S G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS+ G + N FM+HYNF P + GE +G+P RREIGHG+LA R I+ V+P +FPY+ Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD+F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +ALQQA R+HILN M + + Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + + PR+ + I P++IR+VIG GG VIR + E+TG + ++DDGTVKIASS+ Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EA +E IR I ++ EV +IY G+V++++DFGAFV+ +DGLVHISQ+S ERVA Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD ++ V VK+++ D +G+++LS+K Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689 >gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. Iowa] gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii str. Iowa] Length = 748 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V K+G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ + E +P++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + + K R +D + +K+ ++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G +F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKFSNNTKP 704 >gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] Length = 707 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/683 (48%), Positives = 464/683 (67%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQ FFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+++ ASAAL LSG+PF GP+ A+V +IN QYVLNP DE + LDL V+GT AVL Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245 MVE EA+ LSED +L A++FGH + + VIE I+ L K ++ ++ L ++ Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKWDWHAEPVNEALRARVA 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L + I EK R Q+D +K + ++ + + EI + ++ VVR+ Sbjct: 248 ELATARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKDVVRS 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P GE +G+P RREIGHGRLA+R + V+P A FPYT+R+ Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAADFPYTVRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL M + +S R Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + EF PR+ M I P++I++VIG GG VIR + ++TG + I+DDGT+KIA++ + + Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LS+K Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690 >gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 103P14B1] gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 101P30B1] Length = 695 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/700 (49%), Positives = 478/700 (68%), Gaps = 14/700 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ K+ V I+ Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291 + ++L+E+ + + E ++ K R ++D+L + + E S + +I Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+G Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +S ERV SD +KEG TV V++ D D+RG+IKL+MK V+ Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695 >gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC8] Length = 695 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/700 (49%), Positives = 478/700 (68%), Gaps = 14/700 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ K+ V I+ Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291 + ++L+E+ + + E ++ K R ++D+L + + E S + +I Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELATEALVLAGDETSDDYADKVAQI 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+G Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +S ERV SD +KEG TV V++ D D+RG+IKL+MK V+ Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695 >gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] Length = 714 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/701 (48%), Positives = 482/701 (68%), Gaps = 15/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++H ++ + LETG IARQ+ G+V+ T +TVVLATVV +S K GQDFFPLT Sbjct: 1 MFEIHKETFQYGQHTVTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA G+IPGG+ +RE + TE E L +R+IDR +RPLF + + NE QV + VM Sbjct: 61 VDYVEKFYAAGRIPGGFFKREGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E +P + +M+ ASAAL ++G+PF GPV GA+V YIN QYVLNP + + S +DL V+ Sbjct: 121 NPEVNPDIPAMLGASAALSIAGIPFNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT+ AVLMVE EA++LSE+++L I+FGH + + I AI L K +P ++ Sbjct: 181 GTEAAVLMVESEAHELSEEIMLGGIMFGHEQMQAAINAIHALTAKAGKPEWDWKPAPVNE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEG 289 L ++++ E L + + EK R +++ ++ ++ + + + + Sbjct: 241 P----LLAAVTELAGEKLAAAYKMTEKQARSQRLKEISAEVAAELPAKLTEEQRAGITNA 296 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 ++ + ++AK+VR +L+ + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+ Sbjct: 297 DVGDIMFGLEAKIVRGQILNGEPRIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQAL 356 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV TLGT DEQ +D+++G R+ FM HYN P ATGE RMGAP RREIGHGRLARRA+ Sbjct: 357 VVTTLGTGRDEQMIDAVAGEYRDRFMFHYNMPPYATGECGRMGAPKRREIGHGRLARRAV 416 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +LP F YT+R+VSEITES+GSSSMA+VCG +L+LMDAGVP+ + VAGIAMGL+K+ Sbjct: 417 EMMLPAPEDFQYTMRVVSEITESNGSSSMASVCGGALSLMDAGVPLKQLVAGIAMGLIKE 476 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 + F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GR+ Sbjct: 477 ENKFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRM 536 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL M + + +L + PR+ M I P++IR+VIG GG IRGI EQTGA ++I + Sbjct: 537 HILGIMKEATGGNVGELSAYAPRMITMKINPEKIRDVIGKGGATIRGITEQTGASIDIKE 596 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG++ IAS E A+++I IT EV +Y+G V+K++DFGA V +DGL+HI Sbjct: 597 DGSITIASVDGDAGERAKKLIEDITAEVEVGAVYEGTVLKLLDFGAIVSVLPGKDGLLHI 656 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SQ++ ERV D +KEG V VK+L+ D++G+++LSMK + Sbjct: 657 SQIANERVNTVGDFLKEGQVVKVKVLEADEKGRLRLSMKAL 697 >gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 740 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 465/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V +S ++GQDFFPLTVNYQ Sbjct: 47 HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 106 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++ V+ D ++ Sbjct: 107 EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 166 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +++M+ ASAAL +S +PF GP+ G +V ++GQ+V NP +++ ++ L++ V+ ++D Sbjct: 167 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 226 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 AV+MVE A + SE VL+AI FGH +P+IEA + L K+ K + S D L+ Sbjct: 227 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVD-EALK 285 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + ++ + I K R +I ++ + + E+ E EI D + + Sbjct: 286 TRVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYE 344 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++ R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V TLGT DEQ Sbjct: 345 LVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQ 404 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G R F++HYNF P + GE S AP RREIGHG LA RA+ V+P+ FPY Sbjct: 405 RIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPY 464 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI PVAGIAMGL+K+G+ ILSDI G Sbjct: 465 TIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILG 524 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT++G+TA+QMD+KI G++ IM AL QA+ GRLHIL +M++ ++ Sbjct: 525 DEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAA 584 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R L + PR+ + + D+IR+VIG GGK IRGI E TG ++I+D G + IAS+S Sbjct: 585 PRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKE 644 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MIR +T E K+Y G V KVMDFGAFV DGLVHIS+L TERV + Sbjct: 645 ACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVT 704 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV+ EGD V VK + D +GKIKLS K Sbjct: 705 DVLNEGDKVLVKCIGIDKQGKIKLSRK 731 >gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae ESF-5] gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae ESF-5] Length = 748 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V K+G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G +F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704 >gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella bronchiseptica RB50] gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella bronchiseptica RB50] Length = 719 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/699 (47%), Positives = 484/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG +ARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + P + +M+ ASAAL +SG+PF GP+ A+V Y++GQYVLNP + + S +DL V+ Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA QLSE+++L ++FGH + + I AI L + K D + K Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQTAINAIHDLVRDAGKPDW--DWQPAPK 238 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291 E ++ + +E L + I EK R ++ ++ + + + + + + + Sbjct: 239 NEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGV 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV Sbjct: 299 DNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ +D+L G R+ FM+HYN P ATGE R+G P RREIGHGRLA+RA+ P Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLP 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP + VAG+AMGL+ D Sbjct: 419 LLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSG 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDG Sbjct: 539 LGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+ IAS + + A+ I +T EV +IY G V++++DFGA V RDGL+HIS+ Sbjct: 599 TIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 659 IANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697 >gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis Tohama I] gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella parapertussis 12822] gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis Tohama I] gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella parapertussis] gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis CS] Length = 719 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/699 (47%), Positives = 484/699 (69%), Gaps = 11/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG +ARQ+ GAVL + +TVVLATVV + K GQDFFPLT Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + P + +M+ ASAAL +SG+PF GP+ A+V Y++GQYVLNP + + S +DL V+ Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA QLSE+++L ++FGH + + I AI L + K D + K Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDW--DWQPAPK 238 Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291 E ++ + +E L + I EK R ++ ++ + + + + + + + Sbjct: 239 NEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGV 298 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV Sbjct: 299 DNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVV 358 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ +D+L G R+ FM+HYN P ATGE R+G P RREIGHGRLA+RA+ P Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLP 418 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP + VAG+AMGL+ D Sbjct: 419 LLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSG 478 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHI Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHI 538 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDG Sbjct: 539 LGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T+ IAS + + A+ I +T EV +IY G V++++DFGA V RDGL+HIS+ Sbjct: 599 TIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 659 IANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697 >gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira crunogena XCL-2] gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena XCL-2] Length = 694 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 471/687 (68%), Gaps = 5/687 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ ++ ETG IARQ+DGAV+ G+T +L TVV ++ K GQDFFPLTV YQE+ Y Sbjct: 8 FQYGKHEVRFETGEIARQADGAVMVAMGDTQLLVTVVGAKNAKAGQDFFPLTVQYQEKAY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QVI V+ D E V Sbjct: 68 AAGRIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGTEV 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ SAAL +SG+PF+GP+ A V Y + Y+LNP E Q S L+L V+GT DAVLM Sbjct: 128 PAMLGTSAALSISGIPFDGPIGAAVVGYKDNDYILNPSSQELQESDLELSVAGTSDAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246 VE EA++LSE+++L A++FGH + + I+AI +L K ++ + L+ ++ Sbjct: 188 VESEASELSEEIMLGAVMFGHEQMQVAIDAIKELKAEVGKPAWNWEAAEEDIDLKTKVFD 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFEDIQAKVV 303 I+ D+ + I +K R ID K K++ ++ + ++ G+I + +Q ++V Sbjct: 248 AIRSDIEAAYDIADKMDRYAAIDAAKTKVMEALAATEENPEGYDAGDIEKMVGKLQKEIV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + R+DGRD++T+R I QVG+L + HGS+LF RG+TQAIVV TLGT +D + V Sbjct: 308 RGRIIAGEPRIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGTEKDAKMV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+G+ + FM+HYNF P + GE R+G+P RREIGHG LARR + +LP +FPYT+ Sbjct: 368 DDLTGSYNDRFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVAALLPTADEFPYTI 427 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEITES+GSSSMATVCG+S++LM AGVP++ P+AGIAMGLVK+ F +LSDI GDE Sbjct: 428 RVVSEITESNGSSSMATVCGTSMSLMHAGVPLAAPIAGIAMGLVKEESGFAVLSDILGDE 487 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL EM K + S Sbjct: 488 DHLGDMDFKVAGTEQGVTALQMDIKITGITQEIMHIALKQAKEGRLHILKEMEKAIGSSN 547 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 + PR + + P+++R +IG GG IR I E+TG + IDDDG VKIA+ Sbjct: 548 QDVATTAPRFFTVKVKPEKVREIIGKGGATIRSITEETGVTIEIDDDGNVKIAAVDDESA 607 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 AA+ I IT PE+ K+Y +VVK++DFGAFV + R+GLVH+SQ++ ERV ++ Sbjct: 608 NAAKARIAEITAEPEIGKVYDAKVVKIVDFGAFVSYMPGREGLVHVSQIADERVEDVNEY 667 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +KEG + V+L D D +G++KLS+K V Sbjct: 668 LKEGQEIKVRLTDVDKQGRVKLSIKAV 694 >gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis Z2491] gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis Z2491] gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis WUE 2594] Length = 706 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii SP-6] gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii SP-6] Length = 767 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/702 (47%), Positives = 482/702 (68%), Gaps = 22/702 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + LETG I+RQ+ GAV+ +TVVLATVV ++ K GQDFFPLT Sbjct: 3 LFNKVTKTFQWGQHTVTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E E+L SR+IDR +RPLF + + NE V+++V+ Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E+S + +++ +SAAL +SG+PF GPV A+V Y+NG+YVLNP + + S +DL V+ Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------E 228 GT+ AVLMVE EA+QL+E+V+L A+++GH + K I AI++L + K E Sbjct: 183 GTEAAVLMVESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDAGKPAWDWQPPARNE 242 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P++ +F + E + I+ K R ++ + ++ Sbjct: 243 PLIAKVAEFGLAKIEAAYQIRN----------KQARTHACRAAYAEVKISLAEAGVVFDN 292 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 ++ ++ +++AK VR +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA Sbjct: 293 VDVDNLLFELEAKTVRGQILQGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 352 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT +D Q +D+L+G R+ F+ HYN P ATGEV RMG RRE GHGRLA+RA Sbjct: 353 LVVATLGTDQDSQRIDALAGDFRDSFLFHYNMPPFATGEVGRMGTTKRRETGHGRLAKRA 412 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + P+LP +F YT+R+VSEITES+GSSSMA+VCG LA+MDAGVP+ VAGIAMGL+K Sbjct: 413 LVPLLPPKDEFGYTIRVVSEITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIK 472 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+ F +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK R Sbjct: 473 EGNRFAVLTDILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEAR 532 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL +M + + + ++ F PR+ M I P++IR+VIG GG VIR + E+TG +++I Sbjct: 533 LHILGKMVEAMGTANTEVSNFAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGCQIDIG 592 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 +DGT+ IAS+ + E A++ I IT E+ K+Y+G VVK++DFGA ++ +DGL+H Sbjct: 593 EDGTITIASTDADKAELAKKRIADITAEAEIGKVYEGPVVKILDFGALINILPGKDGLLH 652 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ISQ++ +RV K +D + EG V VK+L+ D++G+IKLSMK + Sbjct: 653 ISQIAHQRVEKVTDFLTEGQVVKVKVLETDEKGRIKLSMKAL 694 >gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 12P80B1] Length = 695 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/703 (49%), Positives = 475/703 (67%), Gaps = 20/703 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ ++F Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNT-----KQEFFA 234 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYV------RCKQIDDLKKKMVSYFSSEHS---SWNE 288 + EE++ +KE + + E Y R ++D+L + + E S + Sbjct: 235 PAINEELNTQLKEQF--TAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKV 292 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 +I +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA Sbjct: 293 AQIKELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQA 352 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR Sbjct: 353 LVVTTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRG 412 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK Sbjct: 413 VQAMLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVK 472 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+ F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR Sbjct: 473 EGERFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGR 532 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HILN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++ID Sbjct: 533 IHILNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDID 592 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+GT++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVH Sbjct: 593 DNGTIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVH 652 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 ISQ+S ERV SD +KEG TV V++ D D+RG+IKL+MK V+ Sbjct: 653 ISQISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695 >gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina ymp] gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina ymp] Length = 725 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/686 (48%), Positives = 475/686 (69%), Gaps = 5/686 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + ++ + LETGRIARQ+ GAVL T + VL TVV ++ + FFPL+V+YQE+ Sbjct: 30 QFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEK 89 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P Sbjct: 90 TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDP 149 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 + SM+ SAAL +SG+PF GP+ A+V + + Y+LNP ++ SLD+ V+GT+ A Sbjct: 150 DIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVAGTETA 209 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 VLMVE EA++L+ED +L A++F H E + VI+A+ + A K + + L + Sbjct: 210 VLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANTPLLDA 269 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302 + E + + I K R ++D+L++++++ + E + E+ + F +I+ + Sbjct: 270 IRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGEIEYRT 329 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++D K R+DGRD+ TVR + +VG+L +THGS+LF RG+TQA+VV TLGT D Q Sbjct: 330 VRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQL 389 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G +++ FM+HYNF P + GE RMG RREIGHGRLARR + +LP+ +FPYT Sbjct: 390 LDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYT 449 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLV +G+ F +L+DI GD Sbjct: 450 IRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDILGD 509 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL+QA RL+IL +M++V+S+S Sbjct: 510 EDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVISQS 569 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + Sbjct: 570 RTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKDA 629 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 EAA++ + +IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS +RV K +D Sbjct: 630 AEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTD 689 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 V+KEG V V +LD D+RG+IKLS+K Sbjct: 690 VLKEGQEVKVLVLDVDNRGRIKLSIK 715 >gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str. Malish 7] gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str. Malish 7] Length = 749 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V K+G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G +F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGK+I+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704 >gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma proteobacterium HTCC2148] gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma proteobacterium HTCC2148] Length = 703 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/686 (48%), Positives = 464/686 (67%), Gaps = 4/686 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + + LETGRIARQ+ G+VL T T VL TVV +++ + G+DFFPL V+Y E Sbjct: 5 TKTFQYGDQTVTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAVHYVE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF + NE QV+ VM D Sbjct: 65 KTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSADKHID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQD 183 P + +M+ SAAL +SG PF GP+ GA+V + + + Y+LNP ++ ++ LD+ V+GT D Sbjct: 125 PDIPAMIGTSAALAISGAPFNGPIGGARVGFSDEKGYILNPTYEQLEESKLDMVVAGTAD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 AVLMVE EA +LSED +L A++F H E + V++AI++L K + + ++ L Sbjct: 185 AVLMVESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAESGKPKWDWQADEINEELLA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + +K DL + I EK R +++ +++ + + E + EI +F+ ++ + Sbjct: 245 AVEGQVKNDLGEAYRITEKSARYERVGEVRSACLEALAVEGGPSAD-EIKDIFKSVEKSL 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR +L + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI VTLG+ D Q Sbjct: 304 VRKRILAGEPRIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G +R+ FM+HYNF P + GE R+G SRRE+GHGRLARR + VLP +FPYT Sbjct: 364 IDALHGERRDPFMLHYNFPPYSVGEAGRVGFTSRREVGHGRLARRGLAAVLPNQEEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VC SL LM AGVP+ PVAGIAMGLVKDG+ F +L+DI GD Sbjct: 424 IRVVSEITESNGSSSMASVCAGSLGLMAAGVPLKAPVAGIAMGLVKDGNQFAVLTDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI+ IM AL QA+ RLHIL +M++VL+E Sbjct: 484 EDHLGDMDFKVAGTAEGITALQMDIKIEGITAQIMETALDQAQHARLHILGQMNEVLAEG 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R E P + + + D+IR++IG GG IR I EQ+GA V+IDDDGTV+I Sbjct: 544 RTVTSENAPSMMTLKVDSDKIRDIIGKGGATIRSITEQSGATVDIDDDGTVRIFGQDQMA 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A M+ IT +V +Y G V +++DFGAFV+ +DGLVHISQ++ ERV +D Sbjct: 604 RDKAVAMVEEITAEADVGAVYTGTVARIVDFGAFVNILPGKDGLVHISQIANERVENVTD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 + EG V VK+LD D RG+IKLS+K Sbjct: 664 YLSEGQEVKVKVLDVDQRGRIKLSIK 689 >gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 702 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/686 (48%), Positives = 475/686 (69%), Gaps = 5/686 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + ++ + LETGRIARQ+ GAVL T + VL TVV ++ + FFPL+V+YQE+ Sbjct: 7 QFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEK 66 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P Sbjct: 67 TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDP 126 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 + SM+ SAAL +SG+PF GP+ A+V + + Y+LNP ++ SLD+ V+GT+ A Sbjct: 127 DIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVAGTETA 186 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 VLMVE EA++L+ED +L A++F H E + VI+A+ + A K + + L + Sbjct: 187 VLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANTPLLDA 246 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302 + E + + I K R ++D+L++++++ + E + E+ + F +I+ + Sbjct: 247 IRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGEIEYRT 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++D K R+DGRD+ TVR + +VG+L +THGS+LF RG+TQA+VV TLGT D Q Sbjct: 307 VRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQL 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D+L G +++ FM+HYNF P + GE RMG RREIGHGRLARR + +LP+ +FPYT Sbjct: 367 LDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYT 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLV +G+ F +L+DI GD Sbjct: 427 IRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDILGD 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL+QA RL+IL +M++V+S+S Sbjct: 487 EDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVISQS 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + Sbjct: 547 RTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKDA 606 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 EAA++ + +IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS +RV K +D Sbjct: 607 AEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTD 666 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 V+KEG V V +LD D+RG+IKLS+K Sbjct: 667 VLKEGQEVKVLVLDVDNRGRIKLSIK 692 >gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 961-5945] gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis G2136] Length = 706 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D +K G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] Length = 748 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/704 (47%), Positives = 485/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V K+G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ + E + ++ E+++SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKASDREVVVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + + Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP A Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKA 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G +F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT G+TA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGMTALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGKVI+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704 >gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] Length = 707 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis OX99.30304] Length = 706 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 701 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/702 (49%), Positives = 477/702 (67%), Gaps = 20/702 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ GAV G+TVVL V ++ +K GQDFFPLT Sbjct: 1 MFDKHVKTFQYGSQTVTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y++G YVLNP + ++ LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--------AKEPIV 231 GT+ AVLMVE EA L EDV+L A+++GH + + VI AI++LA A EP Sbjct: 181 GTEQAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWKAPEP-- 238 Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE 290 +++ +K++E I E ++ K R +I + + + +E + + E Sbjct: 239 -NAELIAKVKEIAGDTIAEAFKIRS----KQARGAKIAEAWAAVQAALITEDTDTLAANE 293 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I +F+ ++A VVR+ +LD + R+DGRD+ TVR I+ Q +L RTHGS+LF RG+TQA+ Sbjct: 294 IKGIFKHLEADVVRSQILDGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALA 353 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TLGT+ DEQ +D+LSG + FM+HYNF P +TGE RMGAP RREIGHGRLA+RA+ Sbjct: 354 VTTLGTQRDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALL 413 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 VLP+ F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G Sbjct: 414 AVLPEPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEG 473 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLH Sbjct: 474 NKFAVLTDILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLH 533 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL +M + + + +L + PR+ M I D+IR+VIG GG+ IR + +TG ++NI+DD Sbjct: 534 ILGQMKEAVQGPQ-ELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDD 592 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVH 648 GT+ IA+ S +EAAR+ I IT EV K+Y G VVK++D GA V + GLVH Sbjct: 593 GTITIAAVSADAVEAARKRIEEITAEVEVGKVYDGTVVKILDNNVGAIVDVLPGKGGLVH 652 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ISQ++ ERV +D +K G V VK L+ DDRG+++LS+K + Sbjct: 653 ISQIAHERVKDVNDYLKVGQVVKVKALEVDDRGRVRLSIKAL 694 >gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha153] Length = 706 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ST-640] gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria lactamica 020-06] Length = 706 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] Length = 706 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 1656-2] gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii TCDC-AB0715] gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] Length = 695 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV + K GQDFFPLT Sbjct: 1 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ A+V ING+YVLNP ++ Q LDL V+ Sbjct: 120 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI++ A +P + Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297 +L ++ + + + + I K R +D L + V+ F E E+ +FED Sbjct: 240 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR + QVG+L+R HGS+LF RG+TQA+V TLG Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 540 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 660 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 694 >gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] Length = 707 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/671 (49%), Positives = 473/671 (70%), Gaps = 8/671 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 IARQ+ AV+ +T V T V + +K+GQDFFPLTVNYQERTYA G+IPG + RRE Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP E E L++R+IDR +RPLF + + NE Q+I V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V +IN QYVLNP DE + S LDL V+GT AVLMVE EA LSE+ +L Sbjct: 122 VPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260 A++FGH++ + VI+ I++L K KE + ++ L + ++ + + + + I E Sbjct: 182 GAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVAALAESRMGDAYRITE 241 Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320 K R Q+D +K++++ +E + + E+ + ++ +VVR+ ++ + R+DGR+ + Sbjct: 242 KQERYAQVDLIKEEVIGALVAEDENVDVSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301 Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380 VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + F+ HYNF Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P + GE +G+P RREIGHGRLA+R + V+P A+FPYT+R+VSEITES+GSSSMA+ Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITESNGSSSMAS 421 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LSDI GDEDHLG MDFKVAG+ GI Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGSRDGI 481 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 +A+QMD+KI GI+ IM +AL QAK RLHIL+ M + ++ R ++ EF PR+ + I P Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREEISEFAPRIYTIRINP 541 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP--- 617 D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + A+E IR I D+ Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLK---AKEAIRRIEDITAEV 598 Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +IY+G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ Sbjct: 599 EVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEI 658 Query: 678 DDRGKIKLSMK 688 D +G+I+LSMK Sbjct: 659 DRQGRIRLSMK 669 >gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] Length = 713 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/703 (49%), Positives = 481/703 (68%), Gaps = 17/703 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ T E ++ + + LETGRIARQ++ V+ G +V++A VV D + + GQ+FFPLT Sbjct: 1 MFNIITKEFQYGNQQVTLETGRIARQANSVVVHMGGVSVLVAVVVKDEA-QAGQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE RP+E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYAAGKIPGGYGKREGRPSEMETLTSRLIDRPIRPLFPESYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + + +M+ SAAL +S PF GP+ A+V +IN +YVLNP + Q SLDL V+ Sbjct: 120 DKKQDADIAAMIGTSAALAISSAPFNGPIGAARVGFINDEYVLNPNHEALKQSSLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVID 233 GT AVLMVE EA +LSED +L A+++GH + + VI+AI++ AK + P V + Sbjct: 180 GTSSAVLMVESEAKELSEDQMLGAVLYGHAQQQVVIDAINEFAKEVGVQKTQFVAPAVNE 239 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEG 289 + + L+ + + I E +S EK R ++D++K + + + +E + N Sbjct: 240 ALQ-TTLQNQFAAAISEAYTIS----EKASRYTRLDEIKNQAIEALAGDAEAEDYADNVA 294 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 +I +FE ++ + VR +L K R+DGRD +TVR + QVG+L THGS+LF RG+TQA+ Sbjct: 295 QIKELFETLKYRTVRDNILSGKPRIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQAL 354 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TLG D +D+L+GT+++ FM+HYNF + GE R P RREIGHGRLARR + Sbjct: 355 VTTTLGNSRDVNMIDTLAGTKQDHFMLHYNFPSYSVGETGRDSGPKRREIGHGRLARRGV 414 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +LP + +FPY +RIVS+ITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+ Sbjct: 415 QAMLPDSDRFPYVIRIVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKE 474 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +LSDI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+ IM AL QA GR+ Sbjct: 475 GERFAVLSDILGDEDHLGDMDFKVAGSANGVTALQMDIKIEGITPEIMEKALHQAHAGRI 534 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HILN M++V+S SR ++ P ++ I P++IR+VIG GG IR + E+TGA ++IDD Sbjct: 535 HILNAMNEVISTSRKEINAHAPNFAVIDIDPEKIRDVIGKGGATIRQLTEETGAVIDIDD 594 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +GT++I + A +AA I +IT EV K Y G+V ++++FGAFV+ DGLVHI Sbjct: 595 NGTIRIFGENKAATKAAIAKIEAITAEVEVGKTYTGKVARIVEFGAFVNVLPNTDGLVHI 654 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SQ+S R+ +DV+KEG TV V + D D+RG+IKL+MK VDQ Sbjct: 655 SQISDARIENVNDVLKEGQTVNVLVQDIDNRGRIKLTMKGVDQ 697 >gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] Length = 706 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHAKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AYE] gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ACICU] gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB900] gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB056] gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB058] gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB059] gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii AYE] gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Acinetobacter baumannii ACICU] gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 17978] gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] Length = 697 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV + K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ A+V ING+YVLNP ++ Q LDL V+ Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI++ A +P + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297 +L ++ + + + + I K R +D L + V+ F E E+ +FED Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR + QVG+L+R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696 >gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis 053442] gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 053442] Length = 706 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M0579] gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240149] gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis NZ-05/33] Length = 706 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] Length = 707 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG Y+LNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster bacterium] Length = 697 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/684 (48%), Positives = 476/684 (69%), Gaps = 15/684 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETGRIARQ+ GAVLA+ +T VL TVV + ++ GQDFFPL+V+Y E+TYA GKIPG Sbjct: 17 ITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSVDYIEKTYAAGKIPG 76 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE+RP+E E L SR+IDR IRPLF + NE QV+I V+ + E P +++M+ S Sbjct: 77 GFLKREARPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISANKEVDPDMIAMLGVS 136 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL +SG+PF GP+ GA+V + N +++LNP E S LD+ V+GT +AVLMVE EAN+ Sbjct: 137 AALSISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLDMVVAGTDEAVLMVESEANE 196 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249 LSE+++L A++ H+E + I+ I++ E + ++ + I Sbjct: 197 LSEEIMLKAVMCAHDEYQVAIKNIAEFVAEVGNDKWDWEAPATNETLLGDIQSQFGAQIN 256 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVML 308 E + I EK R ++ ++K + SS+ + N E V + F+ ++ VR +L Sbjct: 257 EAYQ----IKEKLDRYAKVGEIKTTAIEALSSDDADGNSAEEVGNYFKKVEKSTVRERIL 312 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R+DGRD+ETVR++ + G+L+ THGS+LF RG+TQA+VV TLG++ D Q ++ L Sbjct: 313 NNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKRDAQLIEKLES 372 Query: 369 TQR-ND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 ++R ND F++HYNF P GE R+G RREIGHGRLARR I LP ++PYT+R+V Sbjct: 373 SERKNDYFLLHYNFPPYCVGETGRVGTTKRREIGHGRLARRGISACLPTIEEYPYTIRVV 432 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCGSSL+LMDAGVP+ PVAGIAMGLVK+GD F +L+DI GDEDHL Sbjct: 433 SEITESNGSSSMASVCGSSLSLMDAGVPMKAPVAGIAMGLVKEGDRFTVLTDILGDEDHL 492 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT G+ A+QMD+KI GI++ IM +AL+QAK RL+IL +M+K++ E Sbjct: 493 GDMDFKVAGTSRGVNALQMDIKIQGITQEIMDIALKQAKEARLNILGQMNKIICEPN-SS 551 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + P+ ++ I D+IR++IG GG+ I+GI+ +GA V++DDDG V + ++ + A Sbjct: 552 SKNAPKTAVIKIDKDKIRDLIGKGGETIKGIISTSGASVDVDDDGNVNVFANDQKAFDIA 611 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +M++ +T VPEV+K+Y G++VK+++FGAFV+ +DGL+HIS+++ ERV K D +KE Sbjct: 612 AQMVKDVTAVPEVDKVYTGKIVKIVEFGAFVNIMPNQDGLLHISEIAHERVEKVEDHLKE 671 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+L DRG+IKLS KV+ Sbjct: 672 GDEIDVKVLGL-DRGRIKLSRKVL 694 >gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 705 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I +IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEAITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] Length = 706 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ AS AL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASTALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA LSEDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILSEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKGALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV SD ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus DSM 2380] gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter carbinolicus DSM 2380] Length = 699 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/691 (48%), Positives = 471/691 (68%), Gaps = 13/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 VE ++ G+ L LETG++ARQ+DGAV+ ++G T VL T V + +++GQ FFPLTVNYQ Sbjct: 4 QKVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPG + RRE TE E L+ R+IDR +RPLF K Y ETQ++ V+ D ++ Sbjct: 64 EKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P ++MV ASAA+ +S +PF+GPV +V + G + NP +++ S +D+ VSG++D Sbjct: 124 DPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSRD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE-- 241 A++MVE E +SE +LDA+ F H +P+I+ +L K+ KE ++FS E Sbjct: 184 AIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKE-----KREFSVPEID 238 Query: 242 ----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 E+++++ + L + I K R + ++K +++ +++ E +I F + Sbjct: 239 PAVVEKVAELAETRLSEAVKIRTKQDRYAAVAEIKTEILETLAADFED-QEDDISEAFGN 297 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +Q ++VR ++ KVR+DGRD T+R I+ ++GLL R HGS+LF RG+TQA+V LGT Sbjct: 298 LQKRLVRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTS 357 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +DEQ +D++ + FM+HYNF P GE S P RREIGHG LA R+I VLP Sbjct: 358 KDEQRMDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHD 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYTLR+VS+I ES+GSSSMA+VCG+SLALMDAGVP+S+ VAGIAMGL+K+GDD ++LS Sbjct: 418 DFPYTLRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDIVVLS 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKV GT GITA+QMD+KI G+S+ IM AL+QA+ GRLHIL++M++ Sbjct: 478 DILGDEDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAE 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ R L + PR+ + + PDQ+R VIG GGK +RGI+E TG ++I+DDG + IAS Sbjct: 538 AITAPRSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDGRINIAS 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +AA +MIR++T V K+Y V K+M+FGAFV +GLVHIS+L+ ERV Sbjct: 598 ADGDACKAAIKMIRNLTQEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHISELAKERV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +D+++EGD V VK LD D +GKIKLS K Sbjct: 658 KKVTDILQEGDQVLVKCLDIDRQGKIKLSRK 688 >gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] Length = 725 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/700 (48%), Positives = 480/700 (68%), Gaps = 2/700 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAV+ +TVVLATVV +S K GQDFFPLT Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+ Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++A+SAAL +SG+PF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 123 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238 GT+ AVLMVE EA+QLSEDV+L A+++GH + + I AI L + K E + Sbjct: 183 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ L+ + + +K R ++ ++ + + + ++ E+ +V D+ Sbjct: 243 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEAGVEADKVEVGNVLFDL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +AK+VR +L + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 303 EAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L+G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GR+HIL M Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L PR+ M I PD+IR VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS++ ERV Sbjct: 603 STDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 D +KEG V VKL+ D++G+++LS+K G I Sbjct: 663 DIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGSI 702 >gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis N1568] Length = 706 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 474/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D +K G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] Length = 706 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] Length = 697 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/699 (49%), Positives = 479/699 (68%), Gaps = 12/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ V+ G V++A V ++ K GQDFFPLT Sbjct: 3 MFNIIRKEFQFGQHNVILETGRVARQANTVVITMGGVQVLVAVVAQPKA-KAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGYFNEIQVTATVISS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ GA+V ING+Y+LNP L++ + LDL V+ Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYILNPNLEQLKESDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPI----VIDS 234 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI + A A E V + Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS- 293 + KL+E I E ++ K R +D L + V+ F E+ E V+ Sbjct: 242 ELLGKLKEAFEAKISEAYTIAV----KQDRYAALDALYAEAVAQFVPENDETGIAEEVNE 297 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +FED++ + VR +L K R+DGRD++TVR I QVG+L R HGS+LF RG+TQA+V T Sbjct: 298 LFEDLKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTT 357 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VL Sbjct: 358 LGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVL 417 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F Sbjct: 418 PAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERF 477 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM AL QA GR+HILN Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMESALNQAYAGRMHILN 537 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM++V+S +R ++ P +++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV Sbjct: 538 EMNQVISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTV 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++ + A +AA I+++T E IY G+V+++++FGAFV+ DGL+HISQ+S Sbjct: 598 RVFGETKAAAQAAVAKIQALTAEIEPGTIYTGKVIRIVEFGAFVNILPGTDGLLHISQIS 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ER+A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 658 NERIANVADVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696 >gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] Length = 706 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQTRSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 706 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] Length = 706 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/699 (48%), Positives = 475/699 (67%), Gaps = 10/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ D + F + Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ERV SD ++ G V VK L+ DDRG+++LS+K + + Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALTE 696 >gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] Length = 707 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELLAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Thiomonas sp. 3As] Length = 719 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/693 (48%), Positives = 481/693 (69%), Gaps = 4/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +W + +ETG IARQ+ GAVL +TVVLATVV R+ K GQDFFPLT Sbjct: 1 MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + +++A+SAAL +SGLPF GPV A+V Y+NG YVLNP R + L+L V+ Sbjct: 121 NPEVEADIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237 GT+ AVLMVE EA+QLSE+V+L+A++FGH + + I AI +L + K KD Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKD- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L + + + +D+R + I +K R + + + K+ + + + + ++ + D Sbjct: 240 QALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGIAADAAKVDGILFD 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++A++VR +L + R+DGRD+ TVR +S + +L RTHGS+LF RG+TQA+ V TLGT Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +D Q +D+L G R+ F++HYN P ATGE R+G P RREIGHGRLA+RA+ VLP+ Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F YT+R+VSE+TES+GSSSMA+VCG LAL+DAGVP+ VAGIAMGL+K+G+ F +L+ Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+ IM +AL QA+ R+HIL M + Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + +R ++ +F PR+ + I P++IR+VIG GG IR + E+TG ++NI +DGT+ IAS Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + A++ I +T EV ++Y G VVK++DFGA V+ +DGL+HISQ++ ER+ Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K SD ++EG V VK+++ DD+G+ +LS+K + Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692 >gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240355] Length = 706 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D +K G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 685 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/669 (48%), Positives = 461/669 (68%), Gaps = 4/669 (0%) Query: 32 LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91 +A+ +T V TVV + +K+GQDFFPLTV+YQERTYA G+IPGG+ +RE RP+E E LI Sbjct: 1 MASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLI 60 Query: 92 SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151 +R+IDR +RPLF + + NE QVI V+ + + SP +V+M+ ASAAL LSG+PF GP+ Sbjct: 61 ARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGA 120 Query: 152 AQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210 A+V +IN Q+VLNP E + S LDL V+GT AVLMVE EA+ LSE+ +L A++FGH + Sbjct: 121 ARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQ 180 Query: 211 CKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269 + VIE I + K K + + + L ++ + + + + I EK R +QID Sbjct: 181 QQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYRITEKQARYEQID 240 Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329 +K +++ +++ + +EG I+ + +++ +VR ++ + R+DGR +TVR + Sbjct: 241 AIKADVIAQLTAQDETVSEGAIIDIITALESSIVRGRIIAGEPRIDGRTVDTVRALDICT 300 Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389 G+L RTHGS++F RG+TQA+ V TLGT D Q +D L+G + + F+ HYNF P + GE Sbjct: 301 GVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETG 360 Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449 R+G+P RREIGHGRLA+R + V+P +FPY +R+VSEITES+GSSSMA+VCG+SLALM Sbjct: 361 RIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM 420 Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 DAGVPI VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI Sbjct: 421 DAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKI 480 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GI+ IM +AL QAK R+HIL+ M + + R + +F PR+ M I P +I++VIG Sbjct: 481 EGITPEIMQIALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGK 540 Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629 GG VIR + E+TG ++IDDDGTVKIA++ +A I I EVN IYKG+V + Sbjct: 541 GGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKAVMARIEDIVAEVEVNAIYKGKVTR 600 Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 V+DFGAFV G ++GLVHISQ++ ERV + +D + G V VK+++ D + +I+L+MK Sbjct: 601 VVDFGAFVSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK- 659 Query: 690 VDQNTGKPI 698 D N P+ Sbjct: 660 -DLNNDTPV 667 >gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC 2396] gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Hahella chejuensis KCTC 2396] Length = 703 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/689 (49%), Positives = 472/689 (68%), Gaps = 4/689 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ + LETGRIARQ+ GAVL T +TVVL T V ++ G+DFFPL+V+YQE+TY Sbjct: 8 FQYGNSTVTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGGY +RE RP+E E L SR+IDR IRPLF + NE Q+I VM + + P + Sbjct: 68 AAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPDGFMNEVQIICTVMSANKDVDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186 S++ A+AAL +SG+PF+GP+ A+V Y + Y+LNP + S LD+ V+GT+DAVL Sbjct: 128 ASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKLDMVVAGTEDAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE EA +L+ED +L A++F H E + ++AI + A+ K + + ++L E + Sbjct: 188 MVESEAKELTEDQMLGAVLFAHQEMQVAVQAIKEFAQEAGKPKWDWQAPEVNAELLEALK 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304 + + I K R ++ +L+++ + E E E+V F ++ VR Sbjct: 248 AKFAGSIGEAYGIRVKADRYAKLGELRQQAEEELAGEEEGKFEAELVKKYFSKLEKACVR 307 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ + R+DGRD++TVRD+ +VG+L THGS+LF RG+TQA+V TLGT D VD Sbjct: 308 QNIIKGEPRIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTMRDVLMVD 367 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G +++ FM HYNF P + GE SR+G RREIGHGRLARR + ++P +FPY +R Sbjct: 368 ALEGEKKDSFMFHYNFPPYSVGEASRVGGVGRREIGHGRLARRGVQALMPNLEEFPYAVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 VSEITES+GSSSMA+VCGSSLALMDAG+P+ PVAGIAMGLVK+GD F +L+DI GDED Sbjct: 428 CVSEITESNGSSSMASVCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLTDILGDED 487 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QA RLHIL EM+KV+SE R Sbjct: 488 HLGDMDFKVAGTEKGVTALQMDIKINGITDEIMEIALEQALHARLHILGEMNKVISEPRD 547 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 + + P++E + I PD+IR+VIG GG IR I E TGA ++IDD+GTV+I + S + Sbjct: 548 SVADNAPKMETIKIDPDKIRDVIGKGGATIRSICEDTGASIDIDDNGTVRIYAESKLAAD 607 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A I IT EV K+Y+G+V ++++FGAFV+ +DGLVHISQ++ ERV +D + Sbjct: 608 EAIYRITEITAEAEVGKLYRGKVERIVEFGAFVNILPGKDGLVHISQIAQERVENVTDYL 667 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 KEG V VK+LD D RG+IKLSMK V ++ Sbjct: 668 KEGQEVVVKVLDIDARGRIKLSMKEVTED 696 >gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] Length = 707 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ LSE+V+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 703 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/695 (47%), Positives = 467/695 (67%), Gaps = 4/695 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ AV+A+ +T VL +VV + K GQDFFPLTVNYQE Sbjct: 5 TKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 RTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + NE Q+I+ V+ + E Sbjct: 65 RTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIP 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++S++ SAAL +SG+PF GPV A+V Y +GQYVLN R E + S LDL V+GT+ A Sbjct: 125 TDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTKGA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK--MCAKEPIVIDSKDFSKLEE 242 VLMVE EA LSEDV+L A+++GH + + V+ A+++ A K V + + S L++ Sbjct: 185 VLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVS-LKD 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++ + + ++ + I +K R I L K V+ + E+ + ++++ V Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQDAKEVSELLHELESDV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ +L + R+DGRD +R + G+L RTHGS+LF RG+TQAIV TLGT D Q Sbjct: 304 VRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQM 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L+G + + FM+HYNF P GE +G+P RREIGHGRLA+R I V+P +FPY Sbjct: 364 IDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPYV 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QAK RLHIL M + +S Sbjct: 484 EDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISGH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ EF PR+ + I D+IR+VIG GG +IR I E + + I+DDGT+KI ++ A+ Sbjct: 544 RDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERAK 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A I +T E K Y+G+V +++DFGAFV ++GLVHISQ++ ERV K +D Sbjct: 604 ADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVAD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 + EG + VK+++ D + +++LS+K + + P Sbjct: 664 HLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698 >gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis CU385] Length = 706 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii DJ] gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii DJ] Length = 702 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/684 (49%), Positives = 472/684 (69%), Gaps = 13/684 (1%) Query: 16 LKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T E VL TVV + G+ FFPL+V+YQE+TYA G+IP Sbjct: 15 VTLETGRIARQASGAVLVTIDDEVAVLVTVVAAKQADPGKGFFPLSVHYQEKTYAAGRIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QVI V+ ++ P + SM+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLSTSKKTDPDIASMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF GP+ A+V + Y+LNP ++ + S LD+ V+GT+ AVLMVE EA Sbjct: 135 SAALAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDMVVAGTESAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H E + VI+AI + A + +P V ++ + E + Sbjct: 195 EELTEDQMLGAVLFAHEEFQAVIQAIKEFAAETGRSAWDWQPPVENTALLEAIRAEFGEA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTV 306 I + ++ K R ++D+L+++ ++ + + E+ F I+ + VR Sbjct: 255 ISQAYTITV----KQERYGRLDELREQTIARLAGDAEGQPSVAEVKEAFGLIEYRTVRQN 310 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++D K R+DGRD+ TVR + +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 IVDGKPRIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQVLDTL 370 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G +++ FM+HYNF P + GE RMG+ RREIGHGRLARR + +LP+ FPYT+R+V Sbjct: 371 EGERKDSFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVQAMLPKDDSFPYTVRVV 430 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F +L+DI GDEDHL Sbjct: 431 SEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHL 490 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT +G+TA+QMD+KI GI+E IM +AL QA RLHIL +M +V+ +SR +L Sbjct: 491 GDMDFKVAGTAAGVTALQMDIKIQGITEEIMEIALNQALEARLHILGQMGQVIGQSRSEL 550 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAA Sbjct: 551 SSNAPTMLSMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETREAAEAA 610 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 ++ + SIT E+ KIY G+V +++DFGAFV+ +DGLVHISQ+S +R+ K +DV+KE Sbjct: 611 KQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKE 670 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 G V V +LD D+RG+IKLS+K V Sbjct: 671 GQEVKVLVLDVDNRGRIKLSIKDV 694 >gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis MC58] gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis MC58] Length = 707 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 2 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M13399] Length = 706 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLVANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str. Hartford] gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str. Hartford] Length = 747 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/696 (46%), Positives = 477/696 (68%), Gaps = 3/696 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L V K+G FFPLT Sbjct: 1 MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCAAVVANKAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V I+G++VLNP L+ + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLIDGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EAN LSE+ +L+A+ FG +P+I+ I +LAK K + + Sbjct: 181 GTADSVMMVESEANLLSEEQMLEAVKFGFESFQPIIKIIKELAKEAKKPKFQMQDLYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ ++++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIKQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM+ Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQLVDSLDGEYKERFMLDYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY +R+V+E TES+GSSSMATVC SSLALM AGVPI PVAGIAMGLVK+G F +LS Sbjct: 421 QFPYAIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM AL+QA+ GRLHIL++M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKAALEQARLGRLHILDQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++S+ +LG+ P + I D+IR+VIG GGKVI+ I E + AK++I DDGTV + + Sbjct: 541 IISKPNSKLGKNVPSTTTIKIDKDKIRDVIGPGGKVIKEICETSDAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS+++ ER+ Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGTKDGFVHISEIAEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V+K+GD V VKL+ FD++GK KL++K D++ Sbjct: 661 ETVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696 >gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240013] gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M04-240196] Length = 706 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora CFBP1430] gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946] gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946] gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora CFBP1430] gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 710 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 471/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GTQ AVL Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTQGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VI+ I+ L K +P ++ S++ Sbjct: 188 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEALRSRIA 247 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + + R++ EK R Q+D +K + + +E + + GEI + ++ Sbjct: 248 AQAESRLSDAYRIT----EKQERYAQVDVIKSETTAALLAEDDTLDAGEISDLLHALEKD 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGEAFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] Length = 704 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/691 (48%), Positives = 470/691 (68%), Gaps = 14/691 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ G + LETGRIARQ+ GAVL T T VL TVV +++ ++G+DFFPL V+Y E Sbjct: 5 TKTFQYGGHTVTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF+ + NE QVI VM D Sbjct: 65 KAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFADGFMNEVQVICTVMSADKHID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQD 183 P + +M+ SAAL +SG PF GP+ A+V + + Y+LNP D+ S L++ V+GTQD Sbjct: 125 PDIPAMIGTSAALAISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNSKLEMVVAGTQD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239 AVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA K S D+ Sbjct: 185 AVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKP-----SWDWQAPATD 239 Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L ++ +K DL + I +K R ++ +++ V+ ++E + + F+ Sbjct: 240 EALLSAVTDKVKGDLGEAYRITDKAERYARVGEIRDACVAELATEDGPSAD-LVKDYFKK 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +VR ++ + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI VTLG+ Sbjct: 299 VEKALVRNRIIAGEPRIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGST 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L G +R+ FM+HYNF P + GE R+G SRREIGHGRLARR + VLP Sbjct: 359 RDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLE 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VC SLA+M AGVP+ PVAGIAMGLVK+G+ F +L+ Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ Sbjct: 479 DILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNA 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 VL R E P + + + D+IR++IG GG +IR I EQ+GA V+I+DDGTV++ Sbjct: 539 VLDAPREVTSENAPSMVTLKVDADKIRDIIGKGGAMIRSITEQSGATVDIEDDGTVRVFG 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 A + A +I IT EV IY G+V +++DFGAFV+ +DGL+HISQ++ ERV Sbjct: 599 QDQASRDKAVALIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SD +KEG+ V VK+LD D RG+IKLS+K Sbjct: 659 ENVSDHLKEGEEVRVKVLDVDQRGRIKLSIK 689 >gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp. HTCC2999] Length = 702 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/686 (47%), Positives = 461/686 (67%), Gaps = 4/686 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ AV+A+ +T VL TVV + K QDFFPLTVNYQE Sbjct: 5 TQNFQYGQHTVTLETGVVARQATAAVMASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE Q++I V+ + E Sbjct: 65 KAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEIP 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184 ++S++ SAAL +SG+PF GP+ A+V Y NG+Y+LN R E + LDL V+GT+ A Sbjct: 125 TDIISLIGTSAALAISGIPFNGPIGAARVGYTNGEYILNTRHSEQAESQLDLVVAGTESA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKLEE 242 VLMVE EA+ LSE+V+L A++FGH + + V+ + + A P+ + ++L+ Sbjct: 185 VLMVESEADILSEEVMLGAVVFGHEQSQAVVNNVREFAAKV-NTPMWDWTPEAENTELKT 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 +++++ K + + I +K R + + + +E+ + E+ + D+++ V Sbjct: 244 KVAELAKAGMTEAYQISDKLARKDAVVAVTSAASAAILAENPDQDPKEVSELLHDLESDV 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ +L + R+DGRD +R + G+L RTHGSS+F RG+TQA+V TLGT D Q Sbjct: 304 VRSRILAGEPRIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQM 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L GT + FM+HYNF P GE +G+P RREIGHGRLA+R I V+P FPY Sbjct: 364 IDELGGTSTSRFMLHYNFPPYCVGETGFIGSPKRREIGHGRLAKRGIQAVMPSETDFPYV 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK ++F++LSDI GD Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILGD 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK RLHIL M + + Sbjct: 484 EDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKEARLHILGVMDQAIGGH 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L EF PR+ + I ++IR+VIG GG +IR I E + + I+DDGT+KI ++ A+ Sbjct: 544 RDELSEFAPRIYTLKIDQEKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATEKAK 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 A E I +T EV K+Y G+V ++ DFGAFV +DGLVHISQ++ ERVAK +D Sbjct: 604 ATIAIEKIEQVTAEIEVGKVYTGKVSRIADFGAFVEVLPGKDGLVHISQIAHERVAKVTD 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 + EG V VK+++ D + +++LSMK Sbjct: 664 YLSEGQEVQVKVMEIDRQNRVRLSMK 689 >gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis 8013] Length = 706 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha C91] gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91] Length = 705 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/690 (50%), Positives = 479/690 (69%), Gaps = 17/690 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L +ETG IA+Q+ GAV+ + +TVVL TVV D+ K GQDFFPLTV+YQE+ Y Sbjct: 8 ITYGHHTLTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTKPGQDFFPLTVDYQEKFY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 + G+IPG + +RE RP+E EIL SR+IDR IRPLF + NE QVI V+ D E + Sbjct: 68 SAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSDAEIDADI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 + + ASAAL+LSG+PF+GP+ A+V YI+ +YVLNP + ++ L+L V+GTQ AVLM Sbjct: 128 PATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAGTQKAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEE 242 VE EAN+LSEDV+L A+ +GH++ + VI I++LA +P KD S L E Sbjct: 188 VESEANELSEDVMLGAVTYGHDQMQQVINMINELADETGVTAWDWQPA---EKDHS-LIE 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---- 298 +++Q+ + DLR + + +K VR + I ++ +++ F+ + EG ++I Sbjct: 244 KITQLAEADLRDAFRLKQKSVRTEAISEIWQRV---FTELKAGTEEGPSEQTIKEIGFAL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +AK+VR +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT Sbjct: 301 EAKIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTAR 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ VLP + Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F Y +R+VSE+TES+GSSSMA+VCG LALMDAG P+ VAGIAMGL+K+G+ F +L+D Sbjct: 421 FGYAMRVVSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL+ M + Sbjct: 481 ILGDEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQS 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L +R + PR+ I P++IR+VIG GG VIR + E+TG ++I DDG+V IAS Sbjct: 541 LPIARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIASI 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S E A+ I +IT EV KIY+G V+K++DFGA V +DGL+HISQ++ ERV Sbjct: 601 SNEGGEQAKRRIENITADVEVGKIYEGTVLKLLDFGAIVSILPGKDGLLHISQIANERVE 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D +KEG + VK+L+ DD+G+++LSMK Sbjct: 661 SVADHLKEGQIIRVKVLEADDKGRLRLSMK 690 >gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] Length = 706 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGVAGETIKEAFKIRQKQERSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D +K G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 707 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 2 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii SDF] gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii] Length = 697 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/695 (49%), Positives = 475/695 (68%), Gaps = 4/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ E ++ + LETGR+ARQ++ VL T G VL VV + K GQDFFPLT Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA G+IPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSS 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ SAAL ++G PF GP+ A+V ING+YVLNP ++ Q LDL V+ Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI++ A +P + Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297 +L ++ + + + + I K R +D L + V+ F E E+ +FED Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ + VR +L K R+DGRD++TVR + QVG+L+R HGS+LF RG+TQA+V TLG Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + VLP Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ F +LS Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+HILNEM+K Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D+GTV++ Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HISQ+S ER+ Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 662 TNVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696 >gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter eiseniae EF01-2] gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2] Length = 757 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/694 (48%), Positives = 482/694 (69%), Gaps = 6/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T +W + + +ETG IARQ+ GAVL + +TVVLATVV RS+K GQDFFPLT Sbjct: 3 IFNKVTKTFQWGDQTVVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR +RPLF + + NE ++I+ + Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVIHTLSL 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +++A+SAAL LSG+PF GP+ A+V YI G+Y LNP + S LDL V+ Sbjct: 123 NPEVDADIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV---IDSKD 236 GT+ AVLMVE EA QLSE+++L A++FGH + K I+AI +L K P+ ++D Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELVHAAGK-PVWQWEAPARD 241 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L ++ + + LR + I K R + +++ ++ + + + Sbjct: 242 -EALIARVAALADDKLRAAYQIRNKQARTEACRAAYAAVLAQLQADGVECDTVKAEGLLF 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI+A +VR+ +L + R+DGRD+ TVR I + G+L R HGS+LF RG+TQA+ V TLGT Sbjct: 301 DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGT 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L+G + FM+HYN P ATGEV RMG+ RREIGHGRLA+RA+ VLP Sbjct: 361 ERDAQRIDALAGEYDDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG L+LMDAGVP+ VAGIAMGL+KDG+ F +L Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+ IM +AL QAK R+HIL +M Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQ 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + +++ ++ F P++ M I ++IR+VIG GG VIR + E+TG ++NI++DGT+ IA Sbjct: 541 QAIGQAKTEVSNFAPKLYTMKINAEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A+ + A+ I IT E+ KIY+G V K++DFGA ++ +DGL+HISQ++ ER Sbjct: 601 ATDAAKADIAKRRIEQITAEIEIGKIYEGPVTKLLDFGALINLLPGKDGLLHISQIAHER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V + SD + EG V VK+++ D+RG++KLSMKV+ Sbjct: 661 VERVSDYLSEGQIVRVKVMEADERGRVKLSMKVL 694 >gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 706 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17] gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17] Length = 706 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/696 (49%), Positives = 469/696 (67%), Gaps = 12/696 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E G+ + LETGRIARQ+ GAVL T + VL TVV + K GQ FFPLTVNY E Sbjct: 7 TKTFELGGKTVTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYTE 66 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TY+VGKIPGG+ +RE+RPTE E L SR+IDR IRPLF + NE QV++ VM + Sbjct: 67 KTYSVGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTVMSANKTQD 126 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQD 183 P + +M+AASAAL +SG+PFEGP+ ++V + N + Y LNP +E SL D+ V+GT+D Sbjct: 127 PDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLLDMIVAGTED 186 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238 AVLMVE +A L+ED +L A++F H E + + I + A K + ++++ Sbjct: 187 AVLMVESQAQSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRWEWQAEAVNAELMG 246 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFED 297 ++ + + I E + I +K R ++ ++K V+ + + + E V F Sbjct: 247 AIKADFADAIAE----AYSIRDKMDRYARLGEIKAAAVAKLAGDEEGKHSAEDVKKCFGK 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + VVR ++D K R+DGRD++TVR I +VG+L HGS+LF RG+TQAIV TLGT Sbjct: 303 TEKHVVRQQVIDGKPRIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTS 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D+L G ++ F+ HYNF P + GE RM P RREIGHGRLA+R + V+P Sbjct: 363 RDMQIIDALEGESKDPFLFHYNFPPYSVGEAGRMMGPGRREIGHGRLAKRGLLAVMPTVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+GD F IL+ Sbjct: 423 EFPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAILT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QA R HIL EM+K Sbjct: 483 DILGDEDHLGDMDFKVAGTKEGITALQMDIKINGITDEIMELALEQAYGARQHILGEMNK 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V++ SR +L P + + I P++IR+VIG GG IR I E+TGA +++DDDG VKI + Sbjct: 543 VIAASRTELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICEETGASIDLDDDGNVKIYA 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ +AA + + IT EV IY+G+V +++DFGAFV+ +DGLVHISQ+S R+ Sbjct: 603 DNMEAAQAAVKRVMEITAEIEVGAIYQGRVERIVDFGAFVNILPGKDGLVHISQISDRRI 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +D +KEG V VK+LD D+RG++KLSMK V + Sbjct: 663 ENVTDELKEGQEVLVKVLDVDNRGRVKLSMKEVKEG 698 >gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus capsulatus str. Bath] gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus str. Bath] Length = 691 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/686 (49%), Positives = 464/686 (67%), Gaps = 3/686 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + ETG IARQ+D AV+ TVVL TVV + DFFPLTVNYQE+ Sbjct: 7 QFQYGAHTVSFETGEIARQADAAVMVDMAGTVVLVTVVGRKDASPHGDFFPLTVNYQEKA 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ +RE RP+E E L +R+IDR IRPLF + +E QV+ VM + E P Sbjct: 67 YAAGRIPGGFFKREGRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLNPEVDPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + SM+ ASAAL LSGLPF+GP+ A+V ++NG YVLNP +GS LDL V+GT +AVL Sbjct: 127 IPSMLGASAALTLSGLPFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLVVAGTANAVL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245 MVE EA L E+V+L A++FGH + + I AI++LA+ P + S + L + Sbjct: 187 MVESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAEEVGVTPWPWEPSAVDAALVAAVD 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L I +K +R +++ +++K ++ ++E + +E + E ++ ++VR+ Sbjct: 247 ELARAGLGEGYNIADKQLRQQKLKEVRKAVIDALTAE-GAHDENAVKRQIEKLEEEIVRS 305 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L R+DGRD TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT D Q +D+ Sbjct: 306 NILHHGKRIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDAQLIDA 365 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + +FM+HYNF P GE +G+P RREIGHGRLA+R + ++P +FPY +RI Sbjct: 366 LEGEYKENFMLHYNFPPYCVGETGAIGSPKRREIGHGRLAKRGVQAIMPTMDEFPYVIRI 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCGSSLALMDAGVP VAGIAMGL+ +G++F +LSDI GDEDH Sbjct: 426 VSEITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSDIMGDEDH 485 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI GI+ IM AL QA+ GR+HIL++M++ L R + Sbjct: 486 LGDMDFKVAGTRDGVTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQALPAPRSE 545 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ I P +IR VIG GG IR I E+TG ++I DDG VKIAS Sbjct: 546 MSDYAPRITSFTIDPSKIREVIGKGGATIRAITEETGTSIDISDDGVVKIASVDKQAGLE 605 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 AR I IT EV K+Y+G+V ++MDFGAFV +DGLVHISQ+S E V K SD + Sbjct: 606 ARRRIEDITAEVEVGKVYEGKVARLMDFGAFVTILPGKDGLVHISQISDEHVEKVSDKLA 665 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVD 691 EGD V VK+L+ D +G+++LSMK V+ Sbjct: 666 EGDMVKVKVLEIDRQGRVRLSMKAVE 691 >gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii DSM 2075] gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii DSM 2075] Length = 749 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/687 (49%), Positives = 469/687 (68%), Gaps = 9/687 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR +ETG+IA+Q+ GAV YGETVVL TVV D ++++G DF PLTV+YQE +YA G Sbjct: 10 GGREFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNVREGIDFLPLTVDYQEMSYAAG 69 Query: 72 KIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 +IPG + RRE RP+E E L SR+IDR +RP +K + ETQ+I VM D + P V++ Sbjct: 70 RIPGNFFRREIGRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNEPDVMA 129 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M ASAALM+S +PF+GP+ G +V ++GQ VLNP ++ ++ L+L V+G++DAV MVE Sbjct: 130 MTGASAALMVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSDLELLVAGSRDAVCMVE 189 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEM 244 + L ED +L+AI FGH +P+++ +LA K P D + + L + Sbjct: 190 GGSLMLGEDEILEAIWFGHAGLQPLLDIQEELAAAVGKPDREFTPPASDDHELTALVAQA 249 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 +Q + L K R + LKK +++ E ++ EG++ E + A+ +R Sbjct: 250 AQSAEPSLAEVLSTKPKLERYAKKRLLKKAVLAAMG-EAAAGREGQVKEAVEHLIAEGMR 308 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 T +L++ R+DGR VR I +VG+L RTHGS+LF RG+TQA+VV TLGT DEQ ++ Sbjct: 309 TAILEEGRRIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIE 368 Query: 365 SLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 S++ G F++HYNF P + GE R+G P+RRE+GHG LARRA+ +LP FPY L Sbjct: 369 SVTEGDVFRHFLLHYNFPPYSVGEAKRLGGPNRRELGHGALARRAVEKILPAKEDFPYCL 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R VSEITES+GSSSMA+VCGSS+ALMDAGVP+S+ VAG+AMGL+K+GD ++L+DI GDE Sbjct: 429 RCVSEITESNGSSSMASVCGSSMALMDAGVPVSEAVAGVAMGLIKEGDKMVVLTDIMGDE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAG+ GI+A+QMD+KI GIS+ IM AL+QA+ GRLHIL EM K + R Sbjct: 489 DHLGDMDFKVAGSARGISAVQMDIKISGISKEIMGQALKQAREGRLHILGEMQKAIDNPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ PR+ + +P ++I+++IG GGKVIRGI +T A+++IDDDGTV++A+ A Sbjct: 549 QEISILAPRITTIHVPVERIKDIIGPGGKVIRGIQMETEARIDIDDDGTVRVAAVDGAAS 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A EMI+ + E N +Y+G+VV++MDFGAFV RDGL+HIS+L RV +DV Sbjct: 609 LRAVEMIKELIQEVEENAVYEGKVVRIMDFGAFVEILPGRDGLIHISELDHTRVRAVTDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +KEGD V VK+L DDRGKI+LS K + Sbjct: 669 IKEGDVVQVKVLGIDDRGKIRLSRKAL 695 >gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas atlantica T6c] gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas atlantica T6c] Length = 703 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/702 (48%), Positives = 464/702 (66%), Gaps = 18/702 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ AV+A+ +T VL +VV + K GQDFFPLTVNYQE Sbjct: 5 TKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 RTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + NE Q+I+ V+ + E Sbjct: 65 RTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIP 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++S++ SAAL +SG+PF GPV A+V Y +GQYVLN R E + S LDL V+GT+ A Sbjct: 125 TDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLDLVVAGTKGA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDF 237 VLMVE EA LSEDV+L A++FGH + + V+ A+++ A EP + KD Sbjct: 185 VLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKDK 244 Query: 238 SKL--EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 K E EM++ + I +K R I L K V+ + + E+ + Sbjct: 245 IKALAEAEMTEAYQ--------ISDKMARKDAIVALTDKTVAAIVEADAEQDAKEVSELL 296 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++++ VVR+ +L + R+DGRD +R + G+L RTHGS+LF RG+TQAIV TLG Sbjct: 297 HELESDVVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLG 356 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +D L+G + FM+HYNF P GE +G+P RREIGHGRLA+R I V+P Sbjct: 357 TERDAQMIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPS 416 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ ++F++ Sbjct: 417 EKEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVV 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKVAGT GITA+QMD+KI GI++ IM +AL+QAK RLHIL M Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R ++ EF PR+ + I D+IR+VIG GG +IR I E + + I+DDGT+KI Sbjct: 537 DQAISGHRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKI 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 ++ A+ + A I +T E K Y+G+V +++DFGAFV ++GLVHISQ++ E Sbjct: 597 FATERAKADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHE 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K +D + EG + VK+++ D + +++LS+K + + P Sbjct: 657 RVNKVADHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698 >gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha710] gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M6190] gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ES14902] Length = 706 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC 23330] Length = 708 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/701 (49%), Positives = 479/701 (68%), Gaps = 18/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHIKSFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+N YVLNP + + LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236 GT+ AVLMVE EA+ L EDV+L A++FGH + + VI AI++LA+ P V D K Sbjct: 181 GTEQAVLMVESEADILPEDVMLGAVVFGHEQMQTVITAINELAQEV--NPEVWDWKAPEA 238 Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEI 291 +K++E +I E ++ +K R ++D+ + + +E + + + EI Sbjct: 239 NTDLIAKVKEISGDLIAEAFKIR----QKQARSAKLDEAWAAVEAVLITEETDTLAKNEI 294 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +F++++A VVR +L + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V Sbjct: 295 KGIFKNLEAAVVRGQILAGQPRIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP+ F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ + + Sbjct: 415 VLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDN 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHI Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M ++ + +L + PR+ M I PD+IR VIG GG+ IR I +TG ++NI DDG Sbjct: 535 LAQMQTAVAGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETGTEINIADDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649 V IA+++ EAA+ I IT EV K+Y+GQVVK++D GA V +DGLVHI Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHI 653 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SQ++ ERV SD ++ G TV VK L+ DDRG+++LSMK + Sbjct: 654 SQITHERVKNVSDYLQVGQTVSVKALEVDDRGRVRLSMKAL 694 >gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] Length = 685 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/671 (49%), Positives = 470/671 (70%), Gaps = 8/671 (1%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 IARQ+ AV+ +T V T V + +K+GQDFFPLTVNYQERTYA G+IPG + RRE Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 RP E E L++R+IDR +RPLF + + NE Q+I V+ + + +P +V+M+ ASAAL LSG Sbjct: 62 RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201 +PF GP+ A+V YIN QYVLNP DE + S LDL V+GT AVLMVE EA LSE+ +L Sbjct: 122 VPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260 A++FGH++ + VI+ I+ L K KE + ++ L++ ++ + + + + I E Sbjct: 182 GAVVFGHDQQQVVIQNINDLVKEAGKEKWDWQPEPVNQALKDRIAALAESRMGDAYRITE 241 Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320 K R Q++ +K+++ + +E + + E+ + ++ +VVR+ ++ + R+DGR+ + Sbjct: 242 KQERYAQVNLIKEEVTAALLAEDENVDLSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301 Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380 VR + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D L G + F+ HYNF Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P + GE +G+P RREIGHGRLA+R + V+P A FPYT+R+VSEITES+GSSSMA+ Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSHADFPYTIRVVSEITESNGSSSMAS 421 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 VCG+SLALMDAGVPI VAGIAMGLVK+G+DF++LSDI GDEDHLG MDFKVAG+ GI Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLSDILGDEDHLGDMDFKVAGSREGI 481 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 +A+QMD+KI GI+ IM +AL QAK RLHIL M + ++ R ++ EF PR+ + I P Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREEISEFAPRIYTIRISP 541 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP--- 617 D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + A+E IR I D+ Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLK---AKEAIRRIEDITAEV 598 Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ Sbjct: 599 EVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEI 658 Query: 678 DDRGKIKLSMK 688 D +G+I+LSMK Sbjct: 659 DRQGRIRLSMK 669 >gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] Length = 711 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/702 (47%), Positives = 473/702 (67%), Gaps = 15/702 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E+E GR L E ++A Q+ GAV A YG+T VL T V L++G DF PLTV+Y E Sbjct: 15 TFEVEVGGRILAFEIDKMAAQASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLE 74 Query: 66 RTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 +YA G+IPGG+ RRE RP+E E L SR+IDR IRPLF K + +E Q+I V+ D+E+ Sbjct: 75 MSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMEN 134 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ ASAAL +S +PF+GP+ ++ + G+ ++NP + + + +L+L V+G+ D Sbjct: 135 DPDIIALNGASAALAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKESTLNLIVAGSND 194 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238 A++MVE A SE+ +L+A+ H E +P++ ++ K I+ID + Sbjct: 195 ALVMVEGGAELASEEEILEALFTAHAEMQPILRLQEQMRVEAGKTKRPVSEIIIDETLKT 254 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++EE +I + + + EK VR + ++D + +++ SE+ E EI + D+ Sbjct: 255 RVEELSRALILQAIAQA----EKKVRHQAMEDGLQTVLTTLESEYEG-REKEITGFYHDL 309 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++L++K R+DGR +R IS +VGLL RTHGS+LF RG+TQA+ V TLGT Sbjct: 310 EKTLVRDLVLNQKRRIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVS 369 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +++L+G FM+HYNF P + GE + PSRREIGHG LA RA+ VLPQ + Sbjct: 370 DEQRIETLTGDTFKAFMLHYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEE 429 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI S+GSSSMATVCG SLA+MDAG+PI PVAG+AMGL+K+ ++ ILSD Sbjct: 430 FPYTIRVVSEILSSNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIKEENNIAILSD 489 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT +GITA+QMD+KIGGI+ IM AL QA+ RLHIL+ M++ Sbjct: 490 ILGDEDHLGDMDFKVAGTAAGITALQMDIKIGGINREIMSQALHQAREARLHILSRMNEA 549 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R QL E P++ +M I PD+IR VIG GGK ++ IV TGAK++I+DDG + IAS Sbjct: 550 IDQPRTQLKENAPKIVVMTINPDKIREVIGPGGKTVKNIVAVTGAKIDIEDDGRIHIASP 609 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A MI+ +T PE+ ++Y+G+V K++DFGAFV DGLVHIS+L +RV Sbjct: 610 DALAANQAIRMIQELTQEPEIGQLYRGKVKKIVDFGAFVEILPGTDGLVHISELDKQRVK 669 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV---VDQNTGKP 697 K +D++KEGD V VK+LD D +GKI+LS K +DQ++ P Sbjct: 670 KVTDILKEGDEVLVKVLDVDRQGKIRLSRKAALDLDQDSVNP 711 >gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis L2TR] gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR] Length = 716 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/688 (50%), Positives = 470/688 (68%), Gaps = 10/688 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + ++ + LETG IARQ+ +VLA+ +T VL TVV + ++GQ+FFPLTVNYQE Sbjct: 5 TKQFQYGQHTVTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 +TYA GKIPGG+ +RE RP+ENE L R+IDR IRPLF + NE QV+ V+ + + + Sbjct: 65 KTYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVNPQIN 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +V+++ SAAL +SG+PF GP+ A+V +N +YVLNP DE + S LDL V+GT A Sbjct: 125 PDIVALIGTSAALSISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLDLVVAGTDKA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS---K 239 VLMVE EA LSED +L A+++GH + VI+AI++ KE +KD S K Sbjct: 185 VLMVESEAQLLSEDQMLGAVMYGHEAMQDVIKAITEFTAEAGKEKWDWQAPAKDESLQTK 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + E Q I E R + +K R ++D +K++MV ++E + + E +F D++ Sbjct: 245 IRELAEQGIGEAYRTT----DKAERKGKLDQVKEQMVEKLTAEDENVDLEESGKIFHDLE 300 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 + +VR+ ++ + R+DGRD + VR IS G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 301 SDIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRD 360 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L+G N FM+HYNF P GE +G+P RREIGHGRLA+R I V+P +F Sbjct: 361 AQMIDELTGMNTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGIQAVMPSHDEF 420 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI VAGIAMGLVK+GD ++LSDI Sbjct: 421 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI 480 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG GITA+QMD+KI GI+ +IM AL QAK RLHIL M + + Sbjct: 481 LGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEAI 540 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 R +L + PR + I D+I++VIG GG VIR + E T + I DDGT+K+A+S Sbjct: 541 GGHREELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKVAASD 600 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A+ +AA E I+ +T EV KIY+G+V +++DFGAFV +DGLVHISQ++ ERV Sbjct: 601 QADADAAIEKIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 ++ +K GD V VK+L+ D +G+++LSM Sbjct: 661 VNEYLKVGDVVPVKVLEIDRQGRVRLSM 688 >gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis FAM18] gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis FAM18] Length = 711 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 6 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 65 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 66 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 125 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 126 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 185 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P + D K Sbjct: 186 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 243 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 244 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 303 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 304 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 363 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 364 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 423 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 424 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 483 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 484 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 543 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 544 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 602 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 603 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 662 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 663 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 699 >gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 706 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 707 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 2 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus Vesicomyosocius okutanii HA] gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 695 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/686 (48%), Positives = 474/686 (69%), Gaps = 23/686 (3%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 LETGRIARQ+ GAVLA+ +T VL TVV + + GQDFFPL+V+Y E+TY+ GKIPG + Sbjct: 17 LETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSVDYIEKTYSTGKIPGSF 76 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 L+RE+RP+E E L SR+IDR+IRPLF + NE QV+I V+ + E +P ++SM+ SAA Sbjct: 77 LKREARPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSANSEVNPDIISMLGVSAA 136 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLS 196 L +SG+PF P+ G++V Y NG+Y+LNP E S LD+ V+GT +AVLMVE EAN+LS Sbjct: 137 LSISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLDMVVAGTDEAVLMVESEANELS 196 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PI---VIDSKDFSKLEEEMSQM 247 E+++L A+++ H + + I I++ + PI V+ S SK +E+++ Sbjct: 197 EEIMLGAVVYAHEQYQVAITNIAEFTTEVGMQKWDWIAPITNEVLLSDIKSKFGKEINKA 256 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTV 306 + I EK R +ID+++ + +E+ + N E VS F++++ VR Sbjct: 257 YQ--------IKEKLDRHAKIDNIRMAAIEALENENENGNSAEEVSKYFKEVEKSTVRER 308 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L+ R+DGR++ETVR++ + G+L+ THGS+LF RG+TQA+VV TLG + D Q ++ L Sbjct: 309 ILNNDSRIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKL 368 Query: 367 SGTQR--NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +R N F++HYNF P GE R+ RREIGHG LARR I LP +FPYT+R Sbjct: 369 ESPERQNNYFLLHYNFPPYCVGETGRLATIKRREIGHGHLARRGITACLPSIEEFPYTVR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VCGSSL+LMDAGVPI P+AGIAMGLVK+ D F +L+DI GDED Sbjct: 429 VVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPIAGIAMGLVKENDRFTVLTDILGDED 488 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT G+ A+QMD+KI I+ IM +AL+QAK RL+IL +M++V+ E Sbjct: 489 HLGDMDFKVAGTSRGVNALQMDIKIQSITHEIMEIALKQAKEARLNILGQMNQVICEPNT 548 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 + TP+ I+ I D+IR++IG GG+ I+GI+ + A +++DD G V I S++ + Sbjct: 549 S-NKNTPKTTIIKIKTDKIRDLIGRGGETIKGIISTSCASIDVDDSGNVNIFSNNQKSFD 607 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +M++ +T +PEVNK+Y G+VVK+++FGAF++ +DGL+HIS++S ERV K D + Sbjct: 608 TAVQMVKDVTAIPEVNKVYTGKVVKIVEFGAFINIMPNQDGLLHISEISHERVEKVKDHI 667 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 +EGD + VK++ DRG+IKLS KV+ Sbjct: 668 REGDKIDVKVIGL-DRGRIKLSRKVL 692 >gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [NC10 bacterium 'Dutch sediment'] Length = 695 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/683 (49%), Positives = 469/683 (68%), Gaps = 5/683 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+PL +E GR+ARQ+DGAVL YG+TVVL TVV + ++ G DFFPLTV+YQER YA GK Sbjct: 11 GKPLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQERAYAAGK 70 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+ +RE +P + E L SR+IDR +RPLF Y+N+ Q+I V+ D ++ P V++++ Sbjct: 71 IPGGFFKREGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDVLAVL 130 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 ASAAL ++ +PF GP+ +V + G+ +LNP + +GS +D+ V+GT+ AV+M+E Sbjct: 131 GASAALTIAPIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDIDMVVAGTRSAVVMLEAG 190 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLEEEMSQMIK 249 AN++ EDV+ +AI FGH +P+I+ +S+LA+ K P + D +L + +S + + Sbjct: 191 ANEIPEDVMFEAIEFGHKGIQPMIDMVSELAQALRVEKVPFQVSPPD-PQLRDRVSALAR 249 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 + LR I EK L ++++ FS E +G + +FE I+ +R ++L+ Sbjct: 250 QGLRALAGIAEKEEHRSHRQQLFDEVMAAFSDEPDD-RKGVVRGLFEAIEHDELRRMILE 308 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 + R DGR E VR I+A+VG+L RTHGS+LF RG TQA+V TLGT EDEQ +D L G Sbjct: 309 EGRRADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRLDDLEGE 368 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 FM+HYNF P + GEV M P RREIGHG LA RA+ LP +F YTLRIVS+I Sbjct: 369 GTKRFMLHYNFPPFSVGEVRFMRGPGRREIGHGALAERALLAALPPKEEFSYTLRIVSDI 428 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVCG+SL+LMDAGVPI VAG+AMGLV + + IL+DI G EDHLG M Sbjct: 429 LESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAILTDIIGLEDHLGDM 488 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT GITA+Q+D+K GI+ ++M AL QA+R RLHIL++M + L+E R + + Sbjct: 489 DFKVAGTRKGITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDRALTEPRSNISVY 548 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 PR+ + IP D+IR+VIG GGKVIRGIV +GAK+++ DDG ++IAS + A + Sbjct: 549 APRIITIMIPVDKIRDVIGPGGKVIRGIVADSGAKIDVSDDGRIEIASVDGEAAQKALSI 608 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I I +VPEV KIY+G+VVK+MDFGAFV DGL+HISQ+S +RV + DV+ EG+ Sbjct: 609 ISKIVEVPEVGKIYQGKVVKIMDFGAFVQILPGTDGLLHISQISEQRVKRVEDVLSEGEE 668 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQ 692 + VK++D D GKI+LS K V Q Sbjct: 669 IMVKVIDVDKNGKIRLSRKEVSQ 691 >gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae NCCP11945] gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 35/02] gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI18] gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA19] gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI2] gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 706 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA 1090] gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID24-1] gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA 1090] gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] Length = 707 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 2 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 62 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 300 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695 >gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 695 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/684 (48%), Positives = 466/684 (68%), Gaps = 15/684 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETGRIARQ+ GAVL + +T VL TVV + + GQDFFPL+V+Y E+TYA GKIPG Sbjct: 15 ITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDYIEKTYAAGKIPG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE+RP+E E L SR+IDR IRPLF + NE QV+I V+ + E P ++SM+ S Sbjct: 75 GFLKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSEVDPDIISMLGVS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL +SG+PF GP+ A+V Y NG+Y LNP E S LD+ V+GT A+LMVE EA++ Sbjct: 135 AALSISGIPFNGPIGSARVGYSNGKYTLNPTYTELVDSDLDMVVAGTDKAILMVESEASE 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEEEMSQMIK 249 LSE ++LDAII+ H + + I I++ E + S ++ + + I Sbjct: 195 LSEKIILDAIIYAHEQYQVAITNIAEFVTQVGVQKWDWEAPATNEVLLSNIKSQFGKQIN 254 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTVML 308 E + I EK R ++ ++K + +E + N E+ F ++ VR +L Sbjct: 255 EAYK----IKEKLNRHVKVGEIKTAAIEALVNEDKNGNSIDEVSKYFNKVEKSTVRERIL 310 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R+DGRD+ETVR++ + G+L+ THGS+LF RG+TQA+VV TLG++ + Q ++ L Sbjct: 311 NNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLES 370 Query: 369 TQRND--FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 ++R + F++HYNF P GE+ R+G RREIGHGRL RR I LP +FPYT+R+V Sbjct: 371 SERQNDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEEFPYTVRVV 430 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA++CG+SL+LMDAGVPI PVAGIAMGLVK+GD F IL+DI GDEDHL Sbjct: 431 SEITESNGSSSMASICGASLSLMDAGVPIKAPVAGIAMGLVKEGDRFTILTDILGDEDHL 490 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GI A+QMD+KI GI+ IM +AL+QAK RL+IL +M++V+ E Sbjct: 491 GDMDFKVAGTSRGINALQMDIKIQGITREIMEIALKQAKEARLNILGQMNQVICEPNTS- 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + TP+ ++ I D+IR++IG GG+ I+GI+ + A V++DD+G V I S+ + A Sbjct: 550 NKNTPKTAVIKIQTDKIRDLIGKGGETIKGIISTSSASVDVDDNGNVNIFSNDQKSFDTA 609 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +M++ +T P++ K+Y G+VVK++DFGAF++ +DGL+HIS+++ ERV K + +KE Sbjct: 610 MQMVKDVTTTPKIGKVYTGKVVKIVDFGAFINIKPNQDGLLHISEIAHERVDKVENHLKE 669 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+L DRG+IKLS KV+ Sbjct: 670 GDEIDVKVLSL-DRGRIKLSRKVL 692 >gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 716 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/694 (48%), Positives = 465/694 (67%), Gaps = 10/694 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF ++ + +ETG +ARQ+ AV+ T VL TVV + K GQ FFPL+ Sbjct: 1 MFTPTICRFDYGQLKVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER+YAVG+IP + RRE+RP E E L SR+IDR IRPLF K + NE QVI V+ Sbjct: 61 VHYQERSYAVGRIPSNFFRRETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P +V+M+ ASA L LSG+PF P+ A+V +ING YVLNP +E Q L+L V+ Sbjct: 121 NPKVNPDIVAMIGASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDLNLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234 GT++AVLMVE EAN L+E+ +L AIIFGH + + VIE+I+ L K K P ++D Sbjct: 181 GTKNAVLMVESEANILTEEQMLGAIIFGHEQQQIVIESINDLVKKAGKLKWPFTPKIVDE 240 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 K S + EE K+DL + I +K R +++++K ++ E+ + N +I + Sbjct: 241 KLRSCITEED----KKDLSNAYLITDKQERYAKLNEIKTNIIERILKENETVNAEQIQDI 296 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + + +VR +L + R+DGRD + +R + A G+L RTHGS+LF RG+TQA+V TL Sbjct: 297 LYNFEKNLVRQRILKDEPRIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTL 356 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D L G + + F+ HYNF P + GE +G+P RREIGH RLA+RA+ V+P Sbjct: 357 GTSRDLQTIDDLMGERSDSFLFHYNFPPYSVGETGMLGSPKRREIGHARLAKRALMAVMP 416 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+ D F+ Sbjct: 417 NIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFV 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKVAGT GITA+QMDMKI GI+ IM AL AK RLHIL+ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTSEGITALQMDMKIQGITPEIMQSALHHAKAARLHILSV 536 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M++V+S + + ++ P + + I P++I++VIG GG VIR + ++T K++I DDG + Sbjct: 537 MNQVISSASSTISQYAPHIYNIKINPEKIKDVIGKGGAVIRALSDETDTKIDISDDGNIT 596 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IA+ S A++ I IT EV +IY+G V ++ D+GAFV A++GLVHISQ++ Sbjct: 597 IAALSQKSAAFAQQRIEEITANIEVGRIYQGTVTRIADYGAFVSIASAKEGLVHISQIAE 656 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K +D +K V VK+L+ D +G+I+LS+K Sbjct: 657 GRVEKVTDHLKLKQQVSVKVLEIDRQGRIRLSIK 690 >gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM 12163] Length = 738 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 36 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 95 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 96 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 155 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GT+ AVL Sbjct: 156 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 215 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VI+ I+ L K +P ++ L Sbjct: 216 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 271 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I EK R Q+D +K + + +E + + GEI + ++ Sbjct: 272 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 331 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 332 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 391 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 392 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 451 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 452 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 511 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 512 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 571 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 572 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 631 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 632 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 691 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 692 DYLQMGQEVPVKVLEVDRQGRVRLSIK 718 >gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] Length = 703 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/701 (49%), Positives = 475/701 (67%), Gaps = 18/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H + + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKTFRYGNQQVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RES+ +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYFERTYAAGKIPGGFFKRESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YIN YVLNP + + LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236 GT+ AVLMVE EAN L EDV+L A+++GH + + VI AI++LA M P + D K Sbjct: 181 GTESAVLMVESEANILPEDVMLGAVVYGHEQMQTVIAAINELASMV--NPELWDWKAPET 238 Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEI 291 +K+++ +I E ++ K R ++D+ + + + E + + EI Sbjct: 239 NNDLVAKIKDISGSLIAEAFKIRS----KQARSAKLDEAWAAVEAALITEETDTLAKNEI 294 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +F+ ++A+VVR +L + R+DGRD+ TVR I+ Q +L RTHGS+LF RG+TQA+ V Sbjct: 295 KGIFKHLEAEVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP+ F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAG+AMGL+ + + Sbjct: 415 VLPKPEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDN 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHI Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + E +L + PR+ M I PD+IR VIG GG+ IR I +T ++NI DDG Sbjct: 535 LTQMQAAV-EGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETNTEINIADDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649 V IA+++ EAA+ I IT EV K+Y+GQVVK++D GA V +DGLVHI Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHI 653 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SQ++ ERV SD ++ G TV VK L+ D+RG+++LSMK + Sbjct: 654 SQITHERVKNVSDYLQVGQTVTVKALEVDERGRVRLSMKAL 694 >gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae Ep1/96] gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae Ep1/96] Length = 732 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 30 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 89 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 90 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 149 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GT+ AVL Sbjct: 150 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 209 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VI+ I+ L K +P ++ L Sbjct: 210 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 265 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I EK R Q+D +K + + +E + + GEI + ++ Sbjct: 266 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 325 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 326 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 385 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 386 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 445 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 446 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 505 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 506 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 565 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 566 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 625 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 626 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 685 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 686 DYLQMGQEVPVKVLEVDRQGRVRLSIK 712 >gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617] Length = 710 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSGLPF GP+ A+V Y+N QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSE+ +L A++FGH++ + VI+ I+ L K +P ++ L Sbjct: 188 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I EK R Q+D +K + + +E + + GEI + ++ Sbjct: 244 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + ++F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P+ FPY Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVKD ++F++LSDI G Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAG+ GITA+QMD+KI GI+ IM +AL QAK RLHIL+ M + +S Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + +F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + + A I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K + Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D ++ G V VK+L+ D +G+++LS+K Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690 >gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] Length = 748 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/704 (46%), Positives = 481/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DGAV G +V+L T V K+G PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGLLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF + NET V +V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT +V+MVE EA+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + + Sbjct: 181 GTSGSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R +D + +K++++F S E+ ++ +I S + Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I++ ++R +L+K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+G +F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GKVI+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPSGKVIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + I++I PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704 >gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida] Length = 684 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/667 (48%), Positives = 465/667 (69%), Gaps = 11/667 (1%) Query: 32 LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91 +A+ +T V TVV + +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI Sbjct: 1 MASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLI 60 Query: 92 SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151 +R+IDR IRPLF + + NE Q++ V+ + + P +V+M+ ASAAL LSG+PF GP+ Sbjct: 61 ARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGA 120 Query: 152 AQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210 A+V +I+ Q+VLNP ++E Q LDL V+GT AVLMVE EA+ L+E+ +L A++FGH + Sbjct: 121 ARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQ 180 Query: 211 CKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269 + VI+AI + K + + + L E++ + + L + I EK R +QID Sbjct: 181 QQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQID 240 Query: 270 DLKKKMVSYFSSEHSSW---NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 +K +++ ++E + +EG+IV +F +++++VR+ ++ + R+DGR +TVR + Sbjct: 241 AIKADVIAQITAEVAEGEDISEGKIVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALD 300 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386 G+L RTHGS++F RG+TQA+ V TLGT D Q +D L+G + + F+ HYNF P + G Sbjct: 301 ICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVG 360 Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446 E +G+P RREIGHGRLA+R + V+P A+FPY +R+VSEITES+GSSSMA+VCG+SL Sbjct: 361 ETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASL 420 Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 ALMDAGVPI VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT +G+TA+QMD Sbjct: 421 ALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMD 480 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 +KI GI+ IM +AL QAK RLHIL M + + R + +F PR+ M I P +I++V Sbjct: 481 IKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDV 540 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP---EVNKIY 623 IG GG IR + E+TG ++IDDDGTVKIA+ + +A+E++ I D+ E +Y Sbjct: 541 IGKGGATIRALTEETGTSIDIDDDGTVKIAA---VDGNSAKEVMARIEDITAEVEAGAVY 597 Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 KG+V ++ DFGAFV G ++GLVHISQ++ ERV K SD + G V VK+++ D +G+I Sbjct: 598 KGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRI 657 Query: 684 KLSMKVV 690 +L+MK V Sbjct: 658 RLTMKEV 664 >gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA6140] Length = 706 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + + LETG IARQ+ AV + G+TVV V ++ +K+GQDFFPL Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ER YA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERNYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V YING YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE +++ + E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + +L PR+ M I D+IR+VIG GG+ IR I +TG ++NI +DGT+ I Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ +AA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV D ++ G V VK L+ DDRG+++LS+K + Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694 >gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 707 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/705 (47%), Positives = 475/705 (67%), Gaps = 11/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + + LETG IARQ+ GAV+ +TVVLATVV + K GQDFFPLT Sbjct: 3 MFNKTTQSFRFGDHDVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + NE QVII+V+ Sbjct: 63 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D P + +M+ ASAAL +SG+PF GP+ +V YI+ ++V+NP ++ + S LDL V+ Sbjct: 123 DPAVDPDIPAMLGASAALAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GTQ AVLMVE EA+ L E +LDA++FGH E + I AI++L K D + K Sbjct: 183 GTQRAVLMVESEADILPEKTMLDAVVFGHREMQVAINAINELVAKAGKP--AWDWQPAPK 240 Query: 240 LEEEMSQMIK---EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291 E ++++++ + L + I K R +++ ++ + +++ + + E+ Sbjct: 241 NEALIARIVEIADKGLHEAYAIRSKQPRTEKLREVYALVEQTLAADAEAAGTEAPDANEV 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + +++A +VR+ +L + R+DGRD+ TVR I + G+L RTHGS+LF RG+TQA+V Sbjct: 301 NGILFELEAHLVRSQILAGEPRIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVT 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT++DEQ +D L Q + FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ Sbjct: 361 TTLGTKQDEQIIDGLCEEQHDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKA 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +F YTLR+VSEI ES+GSSSMA+VCG L+++DAGVP+ VAG+AMGL+K+G+ Sbjct: 421 VLPSPEEFQYTLRVVSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGN 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+ IM AL QA GR HI Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIEGITPEIMQAALAQAHDGRQHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L+ M ++ +L +F PR+ I P++IR+VIG GG VIR + E+TG +N++DDG Sbjct: 541 LSRMHEMAGGGAKELSDFAPRMISFKINPEKIRDVIGKGGSVIRALTEETGTTINVEDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I+S +A + AR I IT E +IY+G V +++DFGA V +DGL+HISQ Sbjct: 601 MVTISSPDMARVAEARRRIEEITAEVEAGQIYEGTVTRLLDFGAIVQLLPGKDGLLHISQ 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 ++ ERV SD +KEG V VK+++ D++G+++LSMK + + G+ Sbjct: 661 IANERVNAVSDYLKEGQKVRVKVIEADEKGRVRLSMKALLREEGE 705 >gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str. Jake] gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake] Length = 796 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/705 (48%), Positives = 484/705 (68%), Gaps = 9/705 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EW G+ L LE+G+IARQ++GAV+ +Y T VLATVV ++ K+ DF PLT Sbjct: 1 MFNLIRKSTEWGGKTLILESGKIARQANGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF + +E ++ N++ + Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177 D + P V +++ A+AAL +SG+ F G V G ++ Y+ + Y+LN D+ SLDLF Sbjct: 120 DTVTPPEVTALIGATAALSISGVSFNGLVAGVRIGYLPSEDKYLLNASADDMLYSSLDLF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237 +SG +D+VLMVE EA++LSE +L A+ FGH C+ VI I + ++ +PI D Sbjct: 180 LSGNEDSVLMVESEASELSESQMLRAVTFGHQNCQEVINLIREFSEEKGVQPIEFIPHDI 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVS 293 + + + K+D ++ K R ++++L+ K++S F+ + S N +++S Sbjct: 240 NPIVNYIESSYKQDFSLAYSNTVKKERVLKLEELRDKVLSDFAEKCSVDNVECDNQDVIS 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + + +VR+ +++ R+DGR + +R+I +V +L + HGS+LF RG+TQA+VV Sbjct: 300 ALKSFERSLVRSQIVETSSRIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTA 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI VL Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+K+GD F Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEGDKF 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IILSDI GDED+LG MDFKVAGT G+TA+QMDMKI GIS +++ AL QAK GR+HIL+ Sbjct: 480 IILSDILGDEDYLGDMDFKVAGTAEGVTALQMDMKISGISVDVIEKALLQAKDGRMHILS 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M+ V+ ESR + PR+E + I D+IRNVIG GGK IR I E+TGAK+ I DGTV Sbjct: 540 KMNAVIQESRNSIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + +E A+ MI I PE+ K+++G VV+++ FGAFV+F G + GL+HIS++ Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIVKFGAFVNFLGGKRGLIHISEIK 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 E ++ V+ D V V ++ DR ++LSM+ VDQ TG+PI Sbjct: 660 NEHISAVGSVISVNDKVKVLVIGI-DREHVQLSMRRVDQETGEPI 703 >gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter fumaroxidans MPOB] gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter fumaroxidans MPOB] Length = 699 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/690 (48%), Positives = 471/690 (68%), Gaps = 10/690 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+V++E GRP+ E G IARQ+ G+VL YG+TVVL + +++G DF PL V+YQ Sbjct: 3 HSVQVEVGGRPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDYQ 62 Query: 65 ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E +YA G+IPGG+ RRE RP+E E L SR+IDR IRPLF K Y ETQV+ V+ D+E Sbjct: 63 EMSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDME 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182 + P VV++ AS AL +S +PF+GPV +V ING + +NP E + L++ V+G++ Sbjct: 123 NEPDVVALTGASTALHISPVPFQGPVAAVRVGRINGSFAINPSAKELLESDLNVVVAGSR 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 DAV+MVE A+ +SED ++DAI FGH P+++A +L + A V ++ E Sbjct: 183 DAVVMVEGGADFVSEDDLVDAIDFGHKAILPILDAQDELQRRIAP---VKEAPPEVVRNE 239 Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + Q +++ ++R PEK+ R + LK+++ + S+ + +I ++ ED+ Sbjct: 240 SLVQAVRDAAAAEMRAVMTTPEKHPRRDRKKALKERIQAELVSDDPDRPK-QIDNILEDL 298 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VVR +M+++ R+DGR + +R I+ Q G+L RTHGS++F RG+TQ + VVTLG+ Sbjct: 299 EKEVVRRMMVEEGRRIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSS 358 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +++L+G FM+HYNF + GEV + P RREIGHG LA R++ VLP+ + Sbjct: 359 DEQKIEALAGETFKSFMLHYNFPAFSVGEVRPLRGPGRREIGHGALAERSVKAVLPRDGE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GSSSMATVCGSSLALMDAGVPI++PV GIAMGLVK+GD I+LSD Sbjct: 419 FPYTIRVVSEVLESNGSSSMATVCGSSLALMDAGVPITEPVGGIAMGLVKEGDKIIVLSD 478 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKV G++ GITA+QMD+KI GI IM AL+QA+ GR+ IL +M +V Sbjct: 479 ILGDEDHLGDMDFKVTGSERGITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGKMKEV 538 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 LS R +L + PRV + I P++IR+VIG GGKVIR IV +TGAK++I+D G V I S Sbjct: 539 LSAPRPELSPYAPRVITIMINPEKIRDVIGPGGKVIRSIVAETGAKIDIEDSGKVVIMSP 598 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A + A E IR +T PEV ++Y ++V+V DFGAF +GL+HISQL RV Sbjct: 599 DGAACDKAVERIRGLTQEPEVGQLYMSRIVRVTDFGAFAEILPNIEGLIHISQLEHRRVR 658 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +DVV+EGD V VK+++ D G+I+LS K Sbjct: 659 KVTDVVQEGDEVLVKVIEIDKDGRIRLSRK 688 >gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] Length = 701 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/679 (49%), Positives = 467/679 (68%), Gaps = 12/679 (1%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVGKIPGG 76 LETGRIARQ+ GAVL T + V + V D + FFPL+V+YQE+TYA GKIPGG Sbjct: 17 LETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGG 76 Query: 77 YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 + +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ SA Sbjct: 77 FFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSA 136 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AL +SG+PF+GP+ A+V + Y+LNP ++ SLD+ V+GT +AVLMVE EA + Sbjct: 137 ALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSEAVLMVESEAKE 196 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249 L+ED +L A++F H+E + VI A+ +LA AK P ++ + E I Sbjct: 197 LTEDQMLGAVLFAHDEFQSVINAVKELAAEAAKPTWAWAPQAEATELLGAIRSEFGAAIS 256 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 + ++ K R ++ +LK+++V+ S E + ++ + F +I+ + VR +++ Sbjct: 257 DAYTITV----KADRYARLGELKEQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENIVN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L G Sbjct: 313 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R+VSEI Sbjct: 373 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVSEI 432 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 TES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDEDHLG M Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDM 492 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L E Sbjct: 493 DFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSEN 552 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR+ Sbjct: 553 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQR 612 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 613 VLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQE 672 Query: 670 VWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 673 VEVLVLDVDNRGRIKLSIK 691 >gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384109|sp|Q1LSL2|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 697 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/677 (48%), Positives = 466/677 (68%), Gaps = 10/677 (1%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 LETG +ARQ+ AV+ +T+VL TVV + +K GQ FFPL VNYQERTYA G+ PGG+ Sbjct: 18 LETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLMVNYQERTYAAGRFPGGF 77 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 RRE RP+E EILISRMIDR +RPLF + NE QVI V+ + + SP +V+M+ SAA Sbjct: 78 FRREGRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSINPQVSPDIVAMIGVSAA 137 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196 L +SG+PF P A+V YIN QYVLNP + E SLDL V+ T +AVLMVE EA QLS Sbjct: 138 LSISGIPFNCPFGAARVGYINNQYVLNPTIAELVDSSLDLVVASTANAVLMVESEAKQLS 197 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKED 251 E+ +L AIIFGH + + VI+ I+ + + K + VID+ L+ ++++ + Sbjct: 198 EEQMLSAIIFGHEQQQLVIQNINHMVTIVGKPKWSWQAQVIDTN----LQLCVTELAESR 253 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 L + I +K R I+ +K ++S ++ + E I ++F +++ ++ R +L K Sbjct: 254 LNEAFCISDKQERDVCIETIKSDVLSALQQKNETIEEETISNIFANLEKQIARNRILGGK 313 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ + +R + + +L RTHGS+LF+RG+TQA+V VTLGT + Q +D L G + Sbjct: 314 LRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTERNAQNIDELIGERT 373 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 + F++HYNF P GE+ +G+P RREIGHGRLA+R I V+P +FPYT+R+VSEITE Sbjct: 374 DRFLLHYNFPPYCVGEIGLVGSPKRREIGHGRLAKRGILAVMPTANEFPYTVRVVSEITE 433 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 S+GSSSMA+VCG+SLALMDAGVPI VAG+AMGL+K+ ++F+ILSDI +ED++G MDF Sbjct: 434 SNGSSSMASVCGTSLALMDAGVPIKAAVAGVAMGLIKEDNNFVILSDILSNEDYIGDMDF 493 Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551 KVAG+ +GITA+QMD+K GI+ NI+ +AL QAK R+HILN M +V+S SR + F P Sbjct: 494 KVAGSKNGITALQMDIKTKGITNNIIQLALNQAKDARMHILNMMEQVISMSRTDISPFAP 553 Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611 R+ + I PD+I++VIG G VIR + E+T ++I+DDGTV +A++ + + A I+ Sbjct: 554 RIHTIKIHPDKIKDVIGKCGSVIRALTEETKTIIDIEDDGTVTVAATDSIKAQQAICRIK 613 Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 IT EV IY G+V +++DFGAF+ ++GLVHISQ++ +RV K +D + V Sbjct: 614 DITAEIEVGSIYHGKVTRIVDFGAFIAISSNKEGLVHISQITNKRVEKVADYLSIDQIVL 673 Query: 672 VKLLDFDDRGKIKLSMK 688 VK+L+ D +G+I+LSMK Sbjct: 674 VKVLEVDRQGRIRLSMK 690 >gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3] gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3] Length = 660 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/659 (49%), Positives = 458/659 (69%), Gaps = 9/659 (1%) Query: 1 MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ V+ ++ + LETG IARQ+ AV+ T +T V +VV + +GQDFFPL Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF +KNE QVI V+ Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 + + P +V+M+ SAAL +SG+PF GP+ A+V +I+GQ VLNP E + S LDL V Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A A + ++ Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEEN 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +++++ + L + I EK R +I ++ ++ +E N EI ++F D Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+DGR+ + VR + + G+L RTHGSSLF RG+TQA+V TLGT+ Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+G +++ F++HYNF P GE +G+P RREIGHG+LA+R I V+P Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GDDF++LS Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ R HIL+ M + Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S +R + EF PR+ M I ++I++VIG GG VIR + E+TG + I+DDGT+KIA+ Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600 Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + A AA+E IR I ++ EV +IY G+V ++ DFGAFV +DGLVHISQ++ Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIA 656 >gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] Length = 701 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/681 (49%), Positives = 466/681 (68%), Gaps = 12/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVGKIP 74 + LETGRIARQ+ GAVL T + V + V D + FFPL+V+YQE+TYA GKIP Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ ++ P + +M+ Sbjct: 75 GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 SAAL +SG+PF+GP+ A+V + Y+LNP ++ + S LD+ V+GT +AVLMVE EA Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEA 194 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +L+ED +L A++F H+E + VI A+ +LA AK P + + E Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEATALLGAIRSEFGAA 254 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 I + ++ K R ++ +LK ++V+ S E + E+ + F +I+ + VR + Sbjct: 255 ISDAYTITV----KADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGEIEYRTVRENI 310 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D+L Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G +++ FM+HYNF P + GE RMG RREIGHGRLARR+I +LP FPYT+R+VS Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSISAMLPAADVFPYTIRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G F IL+DI GDEDHLG Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTDILGDEDHLG 490 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR +L Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 E P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI + EAAR Sbjct: 551 ENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++KEG Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 V V +LD D+RG+IKLS+K Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691 >gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter hongkongensis HLHK9] gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9] Length = 701 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/695 (48%), Positives = 477/695 (68%), Gaps = 10/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ +KLETG IARQ+ G+VL + +TVVL V ++ +K GQDFFPLT Sbjct: 1 MFNKFSKTFQYGRHTVKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL R+IDR IRPLF + ++ QV+ VM Sbjct: 61 VDYYERTYAAGKIPGGFFKREGKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+ ASAA++L+G+PF GP+ A+V Y NG+Y+LNP E S LDL V+ Sbjct: 121 NPEVDADIPAMIGASAAMVLAGVPFMGPIGAARVGYANGEYILNPTKTELTTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKD 236 GT+ AVLMVE EA QL E V+L A+++GH + + I+AI++LA P++ + + + Sbjct: 181 GTESAVLMVESEAQQLPEAVMLGAVVYGHEQMQAAIKAINELADEV--NPVIFEWAPAAE 238 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295 ++L ++ + + D+ + I +K R + + + K+ + + E + I S+F Sbjct: 239 DTELVAQVKALAEADVAAAFKIRQKQARSQALGEAWSKVKAALITEETETLRANHIKSLF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++++A VVR +L + R+DGRD+ TVR I+ + G+L R HGS LF RG+TQA+V TLG Sbjct: 299 KELEANVVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T++DEQ +D+L+G + FM+HYNF P +TGE RMG P RREIGHGRLA+RA+ VLP+ Sbjct: 359 TKQDEQIIDALAGEYTDRFMLHYNFPPYSTGETGRMGPPKRREIGHGRLAKRALIAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F Y++R+VSEITES+GSSSMA+VCG L+LM+AGVP+S VAGIAMGL+ + + F + Sbjct: 419 QEDFSYSMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GRLHIL M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + +L PR+ + I PD+IR+VIG GG VIR + E+TG ++I +DG + I Sbjct: 539 KSAIDAPQ-ELSTHAPRLYTLRINPDKIRDVIGKGGSVIRALTEETGTSIDIAEDGLITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 AS S E A+ I IT E+ KIY+G VVK++D GA V RDGLVHISQ++ Sbjct: 598 ASVSAEGAEEAKRRIEEITAEVEIGKIYEGTVVKILDKNVGAIVQIMPGRDGLVHISQIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ER+A +D ++EG V VK+L+ D+RG+I+LS+K Sbjct: 658 NERIANVADHLQEGQQVRVKVLETDERGRIRLSIK 692 >gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] Length = 709 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/691 (50%), Positives = 473/691 (68%), Gaps = 7/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + L LETG IARQ+ GAV+ T +TVVL TVV +++K GQDFFPLTV+YQER+Y Sbjct: 8 ITYGRHQLTLETGEIARQAHGAVVVTMDDTVVLVTVVGAKNIKPGQDFFPLTVDYQERSY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE Q++ VM D E P + Sbjct: 68 AAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEIDPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 S++ SAAL LSG+PF+GP+ A+V YIN +YVLNP E + + L+L V+GTQ AVLM Sbjct: 128 PSIIGTSAALTLSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAGTQHAVLM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245 VE EA +LSE+V+L A+ +GH + + VI+AI++ A +KD S EE+++ Sbjct: 188 VESEAIELSEEVMLGAVTYGHEQMQIVIDAINEFADEAGVTAWDWTPPAKD-SAFEEKIA 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFEDIQAKVVR 304 M + DLR + I +K R + I ++++ + + E + + F +++K+VR Sbjct: 247 MMAEADLRQAYKIKQKQTRSEAIKTTRERISNELGVGTENGPELQAFMEAFFSLESKIVR 306 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT DEQ +D Sbjct: 307 NQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKID 366 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 SL G F++HYN P ATGE+ R+G P RREIGHGRLA+RA+ VLP +F Y+LR Sbjct: 367 SLQGDYNERFILHYNMPPYATGEIGRVGTPKRREIGHGRLAKRALVAVLPPPEEFGYSLR 426 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VC LALMDAGVP+ VAGIAMGL+KDG+ F +L+DI GDED Sbjct: 427 VVSEITESNGSSSMASVCSGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLTDILGDED 486 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT+ GITA+QMD+KI GI++ IM AL QA GR+HIL M + L +R Sbjct: 487 HLGDMDFKVAGTEKGITALQMDIKIQGITKEIMHAALIQAHEGRMHILQIMKQALPSTRE 546 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 + PR+ + I P++IR+VIG GG VIR + E+TG ++I DDG V IA S E Sbjct: 547 DISIHAPRIIKLKINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGQVTIACVSAEGGE 606 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A++ I IT EV KIY G V+K++DFGA V +DGL+HISQ++ ERV SD + Sbjct: 607 LAKKRIEDITAEVEVGKIYDGVVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNVSDHL 666 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV--DQN 693 EG V VK+L+ DD+G+++LSMK V D+N Sbjct: 667 NEGQQVRVKVLEADDKGRLRLSMKAVSSDEN 697 >gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/703 (48%), Positives = 468/703 (66%), Gaps = 27/703 (3%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + +E GR L LETGR+A+Q+ G+VL TYG++VVL T R + DF PLT+ YQER Sbjct: 5 LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64 Query: 67 TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 YAVG+IPG + RRE RPTENE L R+IDR +RPLF+ Y+NETQVI V+ D E+ Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++M+ ASAAL +S +PF GPV G +V I+G+YVLNP LD+ S LDL V+GT A Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239 V+MVE A+ L ED V + I F H +P+I+ +L K + P +D ++ Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKEVGRPKMEVAPPPVDEDLRTR 244 Query: 240 LEE----EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS- 293 +E EM+++I +K R + +L++++++ ++ ++ E ++ S Sbjct: 245 VESLAAAEMTEVIS--------TADKKARGEAAHNLQERVLATLEADLVANTPEADLESK 296 Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + +D+Q K++R ++ + R+D R + VR I+++V L R HGS+LF RG+TQ Sbjct: 297 LKEAKGLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQ 356 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 +V TLG+ +DEQ ++SLSG FM+HYNF P GEV + PSRR+IGHG LA R Sbjct: 357 VLVSATLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAER 416 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI VLP FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+ Sbjct: 417 AIQAVLPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLI 476 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+G++ ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S IM AL QAK Sbjct: 477 KEGEEVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDA 536 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 RLHIL +M + L R ++ E P++ + I PD+IR+VIG GGKVIRGI G K+++ Sbjct: 537 RLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDV 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG VKI + + + RE++ S+T E+ KIY G V K+MDFGAFV DGLV Sbjct: 597 EDDGKVKIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLV 656 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 HIS+L RV K +DV+KEGD V VK+LD D RGKI+LS K V Sbjct: 657 HISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699 >gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 697 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/695 (46%), Positives = 477/695 (68%), Gaps = 3/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + ++ + L+TG IARQ++ +V+ + +T VL TVV +K QDFFPL Sbjct: 1 MINSTIYKFQYGKHTIILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLV 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYA GK PGG+ RRE RP+E+EIL +R+IDR IRPLF K + N+ Q+I V+ Sbjct: 61 VNYQERTYAAGKFPGGFFRREGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + SP +V+++ ASAAL LS +PF GP+ A+V YIN QYVLNP + E S LDL +S Sbjct: 121 NPQISPDIVAIIGASAALSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVIS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT+ +LMVE E++ LSE +L+AIIFGH + + VI I+KL + K + K+ Sbjct: 181 GTESNILMVESESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQEIGKSKFIWKRKELDL 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297 L++ +S + + L + ++ R Q++++K+ ++ + ++S + N EI+ Sbjct: 241 SLQKYLSDLYESRLNCISIVRDRKGRQIQLNNIKQDVIDFSCIKYSNTMNGNEIMYFLNY 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +++R +L +R+DGR + +R+I ++G+L RTHGS+LF RG+TQA+V VTLGT Sbjct: 301 LEVQLLRQYILKNNLRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L+G + + F+MHYNF P GE+ +GAP RREIGHGRLA+R + V+P + Sbjct: 361 RNAQNLDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+ ++F++LS Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI DEDH+G MDFKVAG GITA+QMD+KI GI+ I+ +AL+++K RL ILN M + Sbjct: 481 DIISDEDHIGDMDFKVAGGKQGITALQMDIKINGITYEIIHVALEKSKLARLKILNFMEQ 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+ R + EF PR+ + I PD+I++VIG GG VIR + E+T ++I+DDG +KI S Sbjct: 541 VIKIPRKNISEFAPRIYNIKINPDKIKDVIGKGGSVIRALTEETNTIIDIEDDGLIKIVS 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + + + A I+ IT + +Y G+V +++FGAF+ ++GL+HISQ+S +R+ Sbjct: 601 LNAEKAKQAMSRIQEITANIAIGSVYTGKVTHIVEFGAFITIFSGKEGLLHISQISEKRI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 K SD +K G V VK+LD D +G+I+LSM+ ++ Sbjct: 661 GKVSDYLKLGQEVLVKVLDIDRQGRIRLSMRGINH 695 >gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/703 (48%), Positives = 468/703 (66%), Gaps = 27/703 (3%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + +E GR L LETGR+A+Q+ G+VL TYG++VVL T R + DF PLT+ YQER Sbjct: 5 LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64 Query: 67 TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 YAVG+IPG + RRE RPTENE L R+IDR +RPLF+ Y+NETQVI V+ D E+ Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++M+ ASAAL +S +PF GPV G +V I+G+YVLNP LD+ S LDL V+GT A Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239 V+MVE A+ L ED V + I F H +P+I+ +L K + P +D ++ Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKDVGRPKMEVAPPPVDEDLRTR 244 Query: 240 LEE----EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS- 293 +E EM+++I +K R + +L++++++ ++ ++ E ++ S Sbjct: 245 VESLAAAEMTEVIS--------TADKKARGEAAHNLQERVLATLEADLVANTPEADLESK 296 Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + +D+Q K++R ++ + R+D R + VR I+++V L R HGS+LF RG+TQ Sbjct: 297 LKEAKGLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQ 356 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 +V TLG+ +DEQ ++SLSG FM+HYNF P GEV + PSRR+IGHG LA R Sbjct: 357 VLVSATLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAER 416 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI VLP FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+ Sbjct: 417 AIQAVLPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLI 476 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+G++ ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S IM AL QAK Sbjct: 477 KEGEEVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDA 536 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 RLHIL +M + L R ++ E P++ + I PD+IR+VIG GGKVIRGI G K+++ Sbjct: 537 RLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDV 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG VKI + + + RE++ S+T E+ KIY G V K+MDFGAFV DGLV Sbjct: 597 EDDGKVKIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLV 656 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 HIS+L RV K +DV+KEGD V VK+LD D RGKI+LS K V Sbjct: 657 HISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699 >gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] Length = 716 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/701 (49%), Positives = 472/701 (67%), Gaps = 18/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + LETG IARQ+ GAV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHVKSFQYGKHTVTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y NGQY+LNP E S LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236 GT+ AVLMVE EAN L EDV+L A++FGH + + VI AI++LA P V D K Sbjct: 181 GTKQAVLMVESEANILPEDVMLGAVVFGHEQMQAVINAINELADEV--NPEVWDWKAPET 238 Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEI 291 +K+ E I E ++ +K R ++D+ + + + E + + EI Sbjct: 239 NTELVAKVREIAGATIAEAFKIR----QKQARSAKLDEAWAAVEAALINEETDTLAKNEI 294 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +F+ ++A VVR +L + R+DGRD+ TVR I+ Q +L RTHGS+LF RG+TQA+ V Sbjct: 295 KGIFKQLEADVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAV 354 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ + + Sbjct: 415 VLPDPEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDN 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHI Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M ++ + +L + PR+ M I PD+IR VIG GG+ IR I +T ++NI DDG Sbjct: 535 LSQMQAAVAGPQ-ELSQHAPRLYTMRINPDKIREVIGKGGETIRSITAETHTEINISDDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649 V IA+++ EAA+ I IT EV K+Y+G VVK++D GA V +DGLVHI Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHI 653 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SQ++ ERV +D +K G V VK LD D+RG+++LS++ + Sbjct: 654 SQIAHERVKDVNDYLKVGQVVNVKALDVDERGRVRLSIRAL 694 >gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM 12804] gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii] Length = 719 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/697 (47%), Positives = 477/697 (68%), Gaps = 7/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQ FFPLT Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+++ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V Y++GQYVLNP + + S +DL V+ Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AVLMVE EA QLSEDV+L +++GH + + I AI L + K + ++ Sbjct: 181 GTENAVLMVESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDAGKPDWEWQPEPKNE 240 Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293 ++ V+ + +K R + ++ + + + + ++ + + + Sbjct: 241 ALIAAVTAAAQEKLVAAYQERQKQARTALLRNVYADVHAALAEQAAAAGQDAPDAVTVDN 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++A++VR +L+ + R+DGRD+ TVR I ++G+L R HGS+LF RG+TQA+VV T Sbjct: 301 ILFDLEARIVRGQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT++DEQ +D+L G R+ FM+HYN P ATGE R+G P RREIGHGRLA+RA+ +L Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALVSLL 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+ VAG+AMGL+ D F Sbjct: 421 PAHEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKF 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ GRLHIL Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTQNGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + L SR +L F PR+ + I P++IR+VIG GG IR + E+TG +++I DDGT+ Sbjct: 541 KMREALEGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS A+ + A+ I +T EV ++Y G V++++DFGA V RDGL+HIS+++ Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R+A +DV+K G V VK+++ DD+G+++LS+K + Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSVKAI 697 >gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium modesticaldum Ice1] gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium modesticaldum Ice1] Length = 709 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/693 (48%), Positives = 469/693 (67%), Gaps = 4/693 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +ETGR+A+Q+ G+VLA YG+TVVL T + + G DFFPLTV+Y+ER Y Sbjct: 6 MEIAGRTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLY 65 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RPTE IL +R+IDR IRPLF K ++N+ QV+ VM D + P + Sbjct: 66 AVGKIPGGFIKREGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPDI 125 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V M+ AS AL LS +PFEGP+ G V ++G+ ++NP +++ + S + L V+GT+DAV+M Sbjct: 126 VGMIGASCALSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSDMHLVVAGTKDAVMM 185 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246 VE AN++ E+ +++AI+FGH E + ++ ++ + K + K + +LE+ + + Sbjct: 186 VEAGANEVPEEDMIEAIMFGHQEIQRIVAFQEEMVAVAGKPKREVPLKQINPELEQAVRE 245 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + LR + P+K R I + K+ V H E +I +V + ++ ++VR + Sbjct: 246 YVGDKLRNAIQNPDKLSREADIQAVMKETVEALLP-HFPEEEKDIRTVLDTMEKEIVRKL 304 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + K R DGR + +R IS +VG+L RTHGS LF RG TQ + V TLGT D Q +D L Sbjct: 305 ITVDKQRPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGL 364 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + +M HYNF P + GE M P RREIGHG LA RA+ PV+P +FPYT+R+V Sbjct: 365 GVEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDEFPYTIRLV 424 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE ES+GS+SMA+VCGS+L+LM+AGVPI KPVAGIAMGL+K+G+ F ILSDI G EDHL Sbjct: 425 SEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSDIQGMEDHL 484 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT G+TA+QMD+KI G++ I+ ALQQA++GRL IL++M V+ + ++ Sbjct: 485 GDMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLAVIDKPAAEM 544 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + PR+ M+I PD+IR VIG GGKVI I+ +TG K++I+DDG + IA++ A Sbjct: 545 SPYAPRIITMSIDPDKIREVIGPGGKVINKIIAETGVKIDIEDDGRIFIAATDTEAANKA 604 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +I SIT EV K+Y G+V ++M+FGAFV ++GL+HISQL+ ERVAK DVVK Sbjct: 605 VRIIESITADVEVGKVYTGKVTRIMNFGAFVEVLPGKEGLIHISQLAEERVAKVEDVVKI 664 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 GD V VK+++ D +G+I LS K V KP V Sbjct: 665 GDEVTVKVVEIDKQGRINLSRKEV-LKANKPAV 696 >gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] Length = 712 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVNADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] Length = 712 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/685 (47%), Positives = 473/685 (69%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ IM I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus propionicus DSM 2032] Length = 695 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/689 (48%), Positives = 460/689 (66%), Gaps = 7/689 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HTVE E GR + ETG++A+Q++G+V+ + G+T VL TVV + KD F PLT+ Y Sbjct: 2 IHTVETEIGGRTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESESKD-MGFLPLTIEY 60 Query: 64 QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 QER YA G+IPG Y RRE RP+E E+L R+IDR +RPLF Y ETQ+I V D Sbjct: 61 QERMYAAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQ 120 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 E P +++M AS ALMLS +PF GPV A+V Y++GQYVLNP + ++ ++L V+GT Sbjct: 121 EFDPDILAMNGASMALMLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQINLVVAGT 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSK 239 + AV+MVE +A++++ED VL+AI F H +P+I+ L + AK +V + + Sbjct: 181 RSAVVMVEGKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKREVVAPTVN-QA 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L+E++ + + EK R + LK+++++ E E+ + + Sbjct: 240 LKEKVEAVAASGMDEVVTTAEKMARAARYSKLKEEVLAQIDPELY-QQPSEVTELLSGYK 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +V+R ++ K +R+DGR E VR IS +VG+L R HGS+LF RG+TQA+V+ TLG+ D Sbjct: 299 KQVMRDRIVGKGMRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ+++ L G FM+HYNF P GEV + PSRR+IGHG LARR I VLP F Sbjct: 359 EQHLEGLGGDVYRRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYTLR+VSE+ ES+GSSSMATVCG SLALMDAGVP+ PV+G+AMGL+K+GD ++L+DI Sbjct: 419 PYTLRVVSEVLESNGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQVVVLTDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GIT +QMD+KI G+ IM AL QAK+GR+HIL +M L Sbjct: 479 LGDEDHLGDMDFKVVGTRQGITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKMEGAL 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R + E P+ + I PD+IR++IG GGKVIR + + +K++++DDGTVKI S+S Sbjct: 539 SSPRTVVSEHAPKYVTLKIHPDKIRDIIGPGGKVIREMTTEFDSKIDVEDDGTVKIFSNS 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A + I+ IT VPEV IY+G+V + +FGAFV DG+VHIS+L+ +RV K Sbjct: 599 SESANALIKRIQQITAVPEVGAIYEGEVRTIKEFGAFVQILPGTDGMVHISELANDRVKK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +DVVKEGD + VK++D D+RG+I+LS K Sbjct: 659 VTDVVKEGDIIKVKVIDIDNRGRIRLSRK 687 >gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] Length = 705 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/699 (49%), Positives = 477/699 (68%), Gaps = 10/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ H ++ + + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFNKHIKTFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSC 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+N YVLNP + + LDL V+ Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA+ L EDV+L A+++GH + + VI+AI++LA P V D K Sbjct: 181 GTAQAVLMVESEADILPEDVMLGAVVYGHEQMQAVIQAINELADEV--NPEVWDWKAPET 238 Query: 240 LEEEMSQM--IKEDLRVSCF-IPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295 E ++++ I L F I +K R ++D+ + + + E + + EI +F Sbjct: 239 NAELVAKVKDISGSLIAEAFKIRQKQARTAKLDEAWAAVEAALINEETDTLAKNEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +L + R+DGRD+ TVR I+ Q +L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KQLEADVVRSQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ + + F + Sbjct: 419 PEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL +M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +S + +L + PR+ M I PD+IR VIG GG+ IR I +T ++NI +DGT+ I Sbjct: 539 QAAVSGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETNTEINIAEDGTITI 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 A+++ EAA+ I +IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 598 AATTAEAGEAAKARIETITAEVEVGKVYEGTVVKLLDNNVGAIVTIMPGKDGLVHISQIT 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ERV SD ++ G TV VK L+ D+RG+++LSMK + + Sbjct: 658 HERVKNVSDYLQVGQTVQVKALEVDERGRVRLSMKALTE 696 >gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70] gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70] Length = 712 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/685 (46%), Positives = 468/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGRPL +E G++A+Q++GAVL YG+TVVL T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF++ ++NE Q++ VM D + SP + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 ++ AS AL +S +PFEGP+ G V ++G++V+NP +++ + S + L V+GT+DA+ M Sbjct: 129 AALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH E K +I ++A KE + + + +LE E+ Q Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + +ED++ + +PEK R I+++K +++ Y E ++ + + + VR Sbjct: 249 LAEEDIKRAVQVPEKLARDAAIEEVKASVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++K+R DGR + +R +S++VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITEEKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D++ IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDNYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK+GR+ IL M + + E R + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGRMEILEHMMQTIREPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ M I P++IR VIG GK I I+++TG K++I+ DGT+ I+S + A + Sbjct: 549 LSKYAPKILTMQINPEKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNQK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV +IY G+V ++ FGAFV +DGLVHIS+L+ ERV + DVV Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS K V Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693 >gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] Length = 712 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDWAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 712 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 712 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] Length = 717 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M + D+ + + EK+ R I +KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PVLP FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R++ Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + E Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] Length = 712 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI] gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 712 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T R K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis str. McKiel] gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis str. McKiel] Length = 747 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/704 (46%), Positives = 483/704 (68%), Gaps = 7/704 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L+L TG+IARQ+DG+V G +V+L T V + K+G FFPLT Sbjct: 1 MFNEITKSVTWNGKVLELSTGKIARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YAVGKIPGG+ +RE + +E E+L+SR+IDR IRPLF + NET V V+ + Sbjct: 61 INYREMAYAVGKIPGGFFKREGKASEREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT ++V+MVE EA+ LSE +L+A+ FG +PV++ I +LA+ + + + S Sbjct: 181 GTTESVMMVESEAHLLSEAQMLEAVKFGFESFQPVVKIIKELAEEAKRPKLEMQDLYPSV 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L+ E+ Q+ +++ + I K R +D + +K++++F S E+ +N +I S + Sbjct: 241 LKNEIEQLFAKEIEQAFAIKSKQERSTSLDLISEKVITHFISNIENKKYNNYQIESALKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +++ ++R +L+K R+DGR + +R I+ +VGLL HGS+LF RG+TQ++V TLGT Sbjct: 301 VESDILRKEILEKNKRIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VD+L G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDNLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM G+PI PVAGIAMGLVK+G F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMQTGIPIKAPVAGIAMGLVKEGKKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+IR++IG GGK+I+ I E +GAK++I DDGTV + + Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +++ A + I++I PE+ +I+ G V K++D GAF+++ G +DG VHIS++S ER+ Sbjct: 601 ADRDKLKIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFVHISEISEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697 S V+K+GD V VKL+ FD++GK KL++K D+ N KP Sbjct: 661 DTVSSVIKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSLNNPKP 704 >gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium violaceum ATCC 12472] gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 722 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/703 (48%), Positives = 482/703 (68%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ T ++ + + LETG IARQ+ G+V+ + +TVV+ +VV +++K GQDFFPLT Sbjct: 9 VFNKITKTFQFGRQTVTLETGEIARQASGSVVVSVDDTVVMVSVVGGKNVKPGQDFFPLT 68 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E E+L SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 69 VDYLERTYAAGKIPGGFFKREGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVLSL 128 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+ ASAAL +SGLPF GP+ A+V Y NG+Y+LNP E Q S +DL V+ Sbjct: 129 NPEVDSDIPAMIGASAALAISGLPFAGPIGAARVGYANGEYILNPTKTELQTSQMDLVVA 188 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA +L E V+L A++FGH + + I+AI++LA P++ D +K Sbjct: 189 GTSRAVLMVESEAKELPEAVMLGAVVFGHEQMQAAIKAINELADEV--NPVMFDWAAPAK 246 Query: 240 LEEEMSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295 E ++Q+ E L + + +K R I++ + + E + EI +F Sbjct: 247 DEALIAQIRGIAGEKLAEAFRLRQKQARTVAINEAWDAVKAGLINEETDTLKANEIKGIF 306 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A++VR +L + R+DGRD+ TVR IS + +L RTHGS+LF RG+TQA+VV TLG Sbjct: 307 KSLEAEIVRGQILAGEARIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLG 366 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T++DEQ +D+L+G FM+HYNF P +TGE RMG P RREIGHGRLA+RA+ VLP Sbjct: 367 TKQDEQIIDALAGEYTERFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALVAVLPP 426 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F Y++R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 427 EDEFGYSMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAV 486 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL M Sbjct: 487 LTDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLM 546 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + + +L PR+ +M I P++IR VIG GG+ IR I + TG ++NI++DGT+ I Sbjct: 547 KEAVDGPQ-ELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIEEDGTITI 605 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653 AS S EAA++ I IT EV K+Y+G VVK++D GA V +DGLVHISQ++ Sbjct: 606 ASVSSEGAEAAKKRIEEITVEVEVGKVYEGTVVKILDNNVGAIVSILPGKDGLVHISQIA 665 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 ER+ SD +KEG V VK ++ DDRG+I+LS+K + + K Sbjct: 666 NERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAK 708 >gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 699 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/700 (47%), Positives = 477/700 (68%), Gaps = 12/700 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M D + ++ + L+ G IARQ++ AV+ + +T VL TVV ++ QDFFPL Sbjct: 1 MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLV 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYA GK PGG+ RRE RP+ENE L SR+IDR IRPLF K + N+ QV+ V+ Sbjct: 61 VNYQERTYAAGKFPGGFFRREGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +V+++ SAAL LS +PF GP+ A+V YI QYVLNP E S LDL +S Sbjct: 121 NPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVIS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT+ +LMVE E+ LSE +LDAIIFGH + + VI I+KL K K + K+ + Sbjct: 181 GTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEVNI 240 Query: 239 KLEEEMSQMIKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVF 295 L+ +S++ + + + CF +K R Q+D +KK +V S +H++ +E EI+ + Sbjct: 241 SLKTYLSELYESRAQDIYCFFDKKE-RHAQVDSIKKDIVKTVLNSYQHAAVDEKEIMYLL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++A+ +R +L K+R+DGR +T+R I + G+L RTHGS+LF RGDTQA+V VTLG Sbjct: 300 NYLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +D L+G + + F++HYNF P GE+ +GAP RREIGHGRLA+R + V+P Sbjct: 360 TERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPN 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI VAG+AMGL+K+G+DF++ Sbjct: 420 ANEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKEGNDFVV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI DEDH+G MDFKV+G+ GITA+QMD+K GI+ +I+ +AL++AK RL IL+ M Sbjct: 480 LSDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALKKAKNARLQILDVM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ ++ +F PR+ + + PD+I++VIG GG VIR + E+T ++I+D+G +KI Sbjct: 540 EQIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETNTIIDIEDNGIIKI 599 Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + + + A++ IR I D+ E+ +Y G+V +++FGAFV ++GLVHISQ+ Sbjct: 600 VA---LDYDKAKQAIRRINDITANVEIGAVYTGKVSHIVEFGAFVTILSGKEGLVHISQI 656 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 S R+ K +D +K G V VK+L+ D +G+I+LSMK V Q Sbjct: 657 SERRINKVTDYLKLGQKVLVKVLEIDRQGRIRLSMKGVHQ 696 >gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] Length = 717 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] Length = 712 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus weihenstephanensis KBAB4] gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus weihenstephanensis KBAB4] gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] Length = 717 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M + D+ + + EK+ R I +KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PVLP FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R++ Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + E Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 712 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADVDTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] Length = 712 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + K + I + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+ +KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R++ Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRIE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIKQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ] gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ] Length = 703 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/695 (48%), Positives = 467/695 (67%), Gaps = 13/695 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ VE + +K+ TG++A+Q+ GAV+ + G+T+VL TVV + K GQDFFPLTV Sbjct: 3 FNEKCVEAQVGNMNVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLTV 62 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 NY E+TYA GKIPG + +RE RP+E+E LI R+IDR IRPLF + Y +TQV+ V+ + Sbjct: 63 NYTEKTYAGGKIPGSFFKREGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAE 122 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 + P ++SM+ ASAALM+S +PFEGP+ G +V ++G+ + NP ++ + S L++ V+ Sbjct: 123 EDHDPAILSMIGASAALMISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDLEIVVAA 182 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSK 235 +DA+ MVE EA+ +SE+ +L+A+ F + + ++ A +LA+ AK P+V+D Sbjct: 183 GKDAIFMVEGEADFVSEEDLLEAVFFAKDAVQGILAAQEELARQVGVAKREVAPLVVDEA 242 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +K++ I + ++ E+Y QI K+++V+ + E ++ EI Sbjct: 243 LKAKVKALAFDRIAQAFKIKA-KQERYAAVAQI---KEEVVAALAEEFEGRDK-EIKGFI 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 DI+ +R +L+ +R+DGRD++TVR I+ + GLL R HGS+LF RG+TQ + TLG Sbjct: 298 GDIEYDRMRHDVLETGIRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLG 357 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T +DEQ +DSL G R FM+HYNF P + GE S AP RREIGHG LA RAI +LP Sbjct: 358 TSQDEQRMDSLYGEYRKKFMLHYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPN 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+RIV+E ES+GSSSMATVCG L+LMDAGVP+ PVAGIAMGL+K+G+ I Sbjct: 418 HDDFPYTIRIVAETLESNGSSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKEGEKVAI 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAG+ G+TA+QMD+KIGG+S+ IM AL+QAK GRLHIL +M Sbjct: 478 LTDILGDEDHLGDMDFKVAGSADGVTALQMDIKIGGVSKEIMQQALKQAKEGRLHILGKM 537 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--GTV 593 ++ L+ R ++ F PR+ + I PD+IR+VIG GGK IR I E TG ++ID D G + Sbjct: 538 AQCLAAPREEMSAFAPRITTIWIKPDRIRDVIGTGGKTIRSITEATGVMIDIDSDNSGKI 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS A +AA +MIR +TD E K+Y G V K+M+FGAFV DGLVHIS+L Sbjct: 598 NIASSDKAACDAAIQMIRGLTDEVEEGKLYMGTVKKIMEFGAFVEVLPGTDGLVHISELD 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV +D++ EGD V VK + D +GKIKLS K Sbjct: 658 ETRVKNVTDILNEGDKVLVKCIGVDKQGKIKLSRK 692 >gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L] gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis str. Al Hakam] gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. CNEVA-9066] gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Western North America USA6153] gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Kruger B] gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Vollum] gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L] gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 712 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 666 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/644 (49%), Positives = 447/644 (69%), Gaps = 5/644 (0%) Query: 50 LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN 109 +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + N Sbjct: 1 MKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYN 60 Query: 110 ETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169 E Q++ V+ + + P +V+M+ ASAAL LSG+PF GP+ A+V +I+ Q+VLNP ++E Sbjct: 61 EIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMNE 120 Query: 170 D-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 Q LDL V+GT AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + K Sbjct: 121 QKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHEQQQVVIEAIKEFTAQAGKP 180 Query: 229 PI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286 + + + L E++ + + L + I EK R +QID +K +++ ++E + Sbjct: 181 RWDWVAPEPNTALIEKVKAIAESRLGEAYRITEKQSRYEQIDAIKADVIAQITAEVAEGE 240 Query: 287 --NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 +EG+I+ +F +++++VR +L+ + R+DGR +TVR + G+L RTHGS++F RG Sbjct: 241 EVSEGKIIDIFTALESQIVRGRILNGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRG 300 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQA+ V TLGT D Q +D L+G + + F+ HYNF P + GE +G+P RREIGHGRL Sbjct: 301 ETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRL 360 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+R + V+P A+FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAM Sbjct: 361 AKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 420 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GLVK+ + F++LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+ IM +AL QA Sbjct: 421 GLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQA 480 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K RLHIL M + + R + +F PR+ M I P +I++VIG GG IR + E+TG Sbjct: 481 KSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTS 540 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++IDDDGTVKIA+ + I IT E +YKG+V ++ DFGAFV G ++ Sbjct: 541 IDIDDDGTVKIAAVDANSAKDVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKE 600 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 GLVHISQ++ ERV K SD + G V VK+++ D +G+I+L+MK Sbjct: 601 GLVHISQIAEERVEKVSDYLAVGQEVSVKVVEIDRQGRIRLTMK 644 >gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group II '5-way CG'] Length = 713 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/690 (48%), Positives = 462/690 (66%), Gaps = 8/690 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE G+ ++LETGR+A+Q+DG+V+ TVV+AT V + K G DF PLTV+YQER Sbjct: 6 VEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQER 65 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + + +TQ+I +V+ D Sbjct: 66 AYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGIS 125 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V+++VA+SAAL +S +PF PV +V ++G +++NP LDE ++ +LDL V+GT+DA+ Sbjct: 126 DVMAVVASSAALYVSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAI 185 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKL 240 +MVE + N++SE+ L AI H P+IEA KL M KE + I K + Sbjct: 186 MMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAMPIPPKVMEMV 245 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298 E + ++E L+++ + + + D+++K++ FS S + E EI + F ++ Sbjct: 246 ESMGASRLREALKIAVKQERQDQTAQILGDVREKILQEFSATSPETVVEEREIFNAFHEL 305 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +++R ++LD KVR DGR +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT + Sbjct: 306 ERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSD 365 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G FM+HYNF P + GE M P RREIGHG LA RA+ PVLP Sbjct: 366 DEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDS 425 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI VAGIAMGL+K+GD ILSD Sbjct: 426 FPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD 485 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDHLG MDFKV GT++GITA+QMD+KI GI+ +M ALQ+A+ GRL+I+ +M Sbjct: 486 ILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKMA 545 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L SR + F PR+ + I D+IR VIG GGKVIRGI E+TGAK+ IDD G ++IAS+ Sbjct: 546 LPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLIQIAST 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A +MI I + +V KIY G+V V D+GAFV GL HISQL RV Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLEDRRVE 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SDVV EGD + VK L+ D +GKI+LS K Sbjct: 666 KVSDVVSEGDLILVKALEVDRQGKIRLSRK 695 >gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] Length = 712 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + K + I + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+ +KK+++ ++ +E + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Paenibacillus polymyxa E681] gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) [Paenibacillus polymyxa E681] Length = 700 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/688 (47%), Positives = 459/688 (66%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE++ GR L LETGR+A+Q++ AV +YGETVVL TV R KD DFFPLTVNY+ER Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP++ IL SR+ DR IRPLF + ++N+ QV+ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +S +PF GP+ G V ++GQ+V+NP + + S L L V+GT+DA+ Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244 +MVE E N++ E+V+L+AI+FGH+E K ++ I +L ++ KE + + K+ E+ Sbjct: 184 MMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 E L + I EK+ R + ID + ++ V++F S++ E ++ V DI + Sbjct: 244 RAYAAERLMEAVKIAEKHARQEAIDAVNEETVAHFESQYIETPELLSDVSEVLYDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ KVR DGR + +R I + +L RTHGS LF RG TQA+ + TLG D Q Sbjct: 304 VRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P +FPYT Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDGD +L+DI G Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI I+ AL+QAK GRL IL++M + + + Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMMEAIQKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R QL + P++ M I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IAS++ Sbjct: 544 REQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E AR +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GDT+ VK+ + D +G++ LS K V Sbjct: 664 VIAIGDTITVKVTEIDQQGRVNLSRKAV 691 >gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. A1055] Length = 712 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Ames] gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Sterne] gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Bacillus anthracis str. A2012] gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Australia 94] gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Ames] gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Sterne] gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] Length = 712 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004] Length = 664 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/648 (49%), Positives = 447/648 (68%), Gaps = 2/648 (0%) Query: 43 TVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL 102 TVV + K GQ FFPLTVNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPL Sbjct: 2 TVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPL 61 Query: 103 FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV 162 F + NE QVI V+ + + +P +V+++ ASAAL LSG+PF GP+ A+V +IN QYV Sbjct: 62 FPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYV 121 Query: 163 LNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221 LNP DE + LDL V+GT AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L Sbjct: 122 LNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINAL 181 Query: 222 AKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 K ++ ++ L ++++ + L + I EK R Q+D +K + Sbjct: 182 VAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALL 241 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 ++ + + EI + ++ VVR+ +L + R+DGR+ + +R + + G+L RTHGS+L Sbjct: 242 AQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSAL 301 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQA+V TLGT D Q +D L G + + F++HYNF P GE +G+P RREIG Sbjct: 302 FTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIG 361 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HGRLA+R + V+P ++FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VA Sbjct: 362 HGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 421 Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 GIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ G+TA+QMD+KI GI+ IM +A Sbjct: 422 GIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVA 481 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QAK RLHIL M + +S R + EF PR+ M I P++I++VIG GG VIR + ++ Sbjct: 482 LNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDE 541 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640 TG + I+DDGT+KIA++ + + A I IT EV +IY G+V +++DFGAFV Sbjct: 542 TGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIG 601 Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 G ++GLVHISQ++ +RV K +D ++ G V VK+++ D +G+I+LS+K Sbjct: 602 GGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIK 649 >gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 735 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/685 (48%), Positives = 465/685 (67%), Gaps = 4/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E AGR LETG++ARQ+ AV YGETVVLATV + K+ DFFPLTVNY+ER Sbjct: 6 EFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERL 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++ V+ D + +P Sbjct: 65 YAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ SA+L +S +PF GP+ G V ++GQ+V+NP +++ + S L L V+GT+DA++ Sbjct: 125 IAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIV 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEEEMS 245 MVE ANQ+ E++VL+AI++GH + + + I+ A K+ K+ V K +LE + Sbjct: 185 MVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVR 244 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + P+K R + + +L +++ +F E E +I V I + VR Sbjct: 245 AYATDKVSAAVRNPDKLAREEALANLNAEVLEHFK-ETFPEKEADIAEVMHTILKERVRE 303 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + +R DGR + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+ DEQ +D Sbjct: 304 AILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDG 363 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + N +M HYNF P + GE + APSRR+IGHG L RA+ PV+P +FPY +R+ Sbjct: 364 LELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRV 423 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEI ES+GS+S A++CGS++ALMDAGVPI PVAGIAMGLVK+GD ILSDI G EDH Sbjct: 424 VSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQGIEDH 483 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+ G+TA+QMD+KI GI +I+ AL+QA+ GR++IL++M + +SE R Sbjct: 484 LGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRAD 543 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L +F PRV + I PD+IR+VIG GG+VI I+E+TG K++I+ DG V I S+ + Sbjct: 544 LSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANR 603 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 AREM+ +I EV Y G+V +V FGAFV ++GLVHISQL RVAK DV + Sbjct: 604 AREMVENIVRDVEVGATYTGKVTRVEKFGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQ 663 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GDT+ VK+ + D++G+I LS K V Sbjct: 664 VGDTLTVKVTEIDNQGRINLSRKEV 688 >gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 712 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] Length = 712 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMFGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKLAVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] Length = 735 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/685 (48%), Positives = 466/685 (68%), Gaps = 4/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E AGR LETG++ARQ+ AV YGETVVLATV + K+ DFFPLTVNY+ER Sbjct: 6 EFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERL 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++ V+ D + +P Sbjct: 65 YAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ SA+L +S +PF GP+ G V ++GQ+V+NP +++ + S L L V+GT+DA++ Sbjct: 125 IAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIV 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEEEMS 245 MVE ANQ+ E++VL+AI++GH + + + I+ A K+ K+ V K +LE + Sbjct: 185 MVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVR 244 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + P+K R + + +L +++ +F E E +I V I + VR Sbjct: 245 EYATDKVSAAVRNPDKLAREEALANLNAEVLEHFK-ETFPEKEADIAEVMHTILKERVRE 303 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + +R DGR + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+ DEQ +D Sbjct: 304 AILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDG 363 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + N +M HYNF P + GE + APSRR+IGHG L RA+ PV+P +FPY +R+ Sbjct: 364 LELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRV 423 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEI ES+GS+S A++CGS++ALMDAGVPI PVAGIAMGLVK+GD ILSDI G EDH Sbjct: 424 VSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQGIEDH 483 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+ G+TA+QMD+KI GI +I+ AL+QA+ GR++IL++M + +SE R Sbjct: 484 LGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRAD 543 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L +F PRV + I PD+IR+VIG GG+VI I+E+TG K++I+ DG V I S+ + Sbjct: 544 LSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANR 603 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 AREM+ +I EV Y G+V +V +GAFV ++GLVHISQL RVAK DV + Sbjct: 604 AREMVENIVRDVEVGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQ 663 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GDT+ VK+ + D++G+I LS K V Sbjct: 664 VGDTLTVKVTEIDNQGRINLSRKEV 688 >gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264] gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264] Length = 712 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/685 (47%), Positives = 470/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEVDADILGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 710 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + KD DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKD-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V I+G++++NP +++ + S + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH E K +I ++ + KE + + + ++LE+ + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKMEVKLYEVDAELEKAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++K+++++++ + G++ + I + VR Sbjct: 249 MAEKDMHTAIQVHEKHAREDAINEVKQRVIAHYEEQEVEAEVLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR S+ +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M V++E R + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L E+ P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S E Sbjct: 549 LSEYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIDQQMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V ++ FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] Length = 717 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M + D+ + + EK+ R I+ +KK+++ ++ ++ + G++ + I + VR Sbjct: 249 MAETDMHSAIQVHEKHAREDAINVVKKRVIEHYEAQEVDADTLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PVLP FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R++ Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRIE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + E Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] Length = 712 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSDKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum] Length = 713 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/690 (48%), Positives = 462/690 (66%), Gaps = 8/690 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE G+ ++LETGR+A+Q+DG+V+ TVV+AT V + K G DF PLTV+YQER Sbjct: 6 VEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQER 65 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + + +TQ+I +V+ D Sbjct: 66 AYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGIS 125 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V+++VA+SAAL +S +PF PV +V ++G +++NP LDE ++ +LDL V+GT+DA+ Sbjct: 126 DVMAVVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAI 185 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIV-IDSKDFSKL 240 +MVE + N++SE+ L AI H P+IEA KL M KE P V I K + Sbjct: 186 MMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPPKVMDMV 245 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDI 298 E + ++E L+++ + + + D+++K++ FS+ E EI + F ++ Sbjct: 246 ESMGAPRLREALKIAVKQERQEQTAQILGDVREKILQEFSASSPEMIVEEREIFNAFHEL 305 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +++R ++LD KVR DGR +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT + Sbjct: 306 ERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSD 365 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G FM+HYNF P + GE M P RREIGHG LA RA+ PVLP Sbjct: 366 DEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDS 425 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI VAGIAMGL+K+GD ILSD Sbjct: 426 FPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD 485 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDHLG MDFKV GT++GITA+QMD+KI GI+ +M +LQ+A+ GRL+I+ +M Sbjct: 486 ILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKMA 545 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L SR + F PR+ + I D+IR VIG GGKVIRGI E+TGAK+ IDD G ++IAS+ Sbjct: 546 LPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLIQIAST 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A +MI I + +V KIY G+V V D+GAFV GL HISQL RV Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLEDRRVE 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K SDVV EGD + VK L+ D +GKI+LS K Sbjct: 666 KVSDVVSEGDLILVKALEVDRQGKIRLSRK 695 >gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii RML369-C] gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii RML369-C] gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] Length = 744 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/702 (45%), Positives = 477/702 (67%), Gaps = 5/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +EW G+ L+L TG+IARQ+DGAV G +V+L T V K+G FFPLT Sbjct: 1 MFNEIIKTVEWGGKTLELSTGKIARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V V+ + Sbjct: 61 INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETFVTCTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL LS P+ V ++V ING++ L+P LD + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT D+V+MVE EA+ LSE+ +L A+ FG + +PV+ I +LA K + + ++ Sbjct: 181 GTNDSVMMVESEAHLLSEEQMLAAVKFGFDSFQPVVNIIKELAAEAKKSKLEMQDLYPAE 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L+ E+ ++ +++ + I K R ++ + +K++ +F+ E +N +I S + Sbjct: 241 LKNEIKKLFAKEIEQTFAIKSKQERSTNLELIPEKVLKHFADDIESKKYNNYQIESALKS 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +++ ++R +L K R+DGR + +R I+ +VGLL HGS+LF RG+TQ++V T GT Sbjct: 301 VESDILRGNILQKNKRIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +DSL G + FM++Y F P + E M AP RRE+GHG+LA RA++PVLP Sbjct: 361 LDEQIIDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPGRREVGHGKLAWRAVNPVLPTKT 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+ + F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEDEKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI G++ IM +AL+QA+ GRLHIL +M+K Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ ++ + P + + D+IR++IG GGKVI+ I E +GAK++I DDGTV I + Sbjct: 541 VISKPNNEMSKNAPSTTTLKVDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSIYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +++ A + +++I PE+ +++ G V+K++D GAFV++ G +DG VHIS+++ ER+ Sbjct: 601 SDKDKLKVALDKVKAIAIEPEIGEVFNGTVMKILDSGAFVNYLGNKDGFVHISEIAEERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 V+K+GD V VKL+ FD++GK KL++K D+++ P Sbjct: 661 ESVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNAEKDKSSANP 702 >gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] Length = 712 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ G V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio alkaliphilus AHT2] gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio alkaliphilus AHT2] Length = 704 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/694 (47%), Positives = 465/694 (67%), Gaps = 10/694 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V IE AGR L +ETGR+A+Q+ G+VL TYG++VVL T R K+ DF PLT+ YQER Sbjct: 5 VSIELAGRKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQER 64 Query: 67 TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 YAVG+IPG + RRE RPTENE L R+IDR +RPLF++ Y++ETQ+I V+ D E+ Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++M+ ASAAL +S +PF GP+ G +V I+GQYVLNP ++ + S LDL V+G++ A Sbjct: 125 PDLMAMLGASAALSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSRLDLIVAGSEKA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243 V+MVE A+ LSE+ V + I F H +P++ +L K + + + + L + Sbjct: 185 VVMVEGGADSLSEEEVKNGIFFAHESLQPLLAMQKELQAAAGKPKLEVKPRQVDEALRQR 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED------ 297 + ++ ++ +K R + L++K+++ E + ++ ++ Sbjct: 245 VQELAATEMAQVITTVDKQQRGEASAMLEEKVLAALEGELAEAAGEQLPVKLQEAKGLLK 304 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ K++R + +++R+D R + VR+I+ +VG+L R HGSSLF RG+TQ +V TLG+ Sbjct: 305 ELKKKMIRERITKERIRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGS 364 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ ++SLSG FM+HYNF P GEV + PSRR+IGHG LA RA+ VLP Sbjct: 365 GEDEQRIESLSGMSFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAVQAVLPDA 424 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ KPV+GIAMGL+K+GDD IL Sbjct: 425 ESFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIAIL 484 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAGT+ GITA+QMD+K+ G+S IM AL QA+ GRLHIL +M Sbjct: 485 SDILGDEDHLGDMDFKVAGTEDGITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMK 544 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++ R + P++ + I PD+IR++IG GGKVI+ I + G K+++ DDG VKI Sbjct: 545 EAIAAPRSDVPAHAPKMFSITINPDKIRDLIGPGGKVIKAITTEYGIKMDVSDDGKVKIF 604 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + + E +E + SIT EV K+YKG V KVMDFGAFV DGLVHIS+L R Sbjct: 605 APTGEIAEKVKEEVLSITAEAEVGKVYKGVVQKVMDFGAFVQILPGTDGLVHISELEHHR 664 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K +DV+ EGD V VK+L+ D RGKI+LS K + Sbjct: 665 VNKVTDVLNEGDEVMVKVLEIDPRGKIRLSRKAL 698 >gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] Length = 712 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 470/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGQGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 14579] gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 14579] Length = 712 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M +ED+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG + RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V+ E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+ +V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEAKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 10987] gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10987] Length = 712 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQSVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187] gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1] gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187] gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1] gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 712 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M V++E R + Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa SC2] gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa SC2] Length = 700 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/688 (47%), Positives = 459/688 (66%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE++ GR L LETGR+A+Q++ AV +YGETVVL TV R KD DFFPLTVNY+ER Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP++ IL SR+ DR IRPLF + ++N+ QV+ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +S +PF GP+ G V +NGQ+V+NP + + S L L V+GT+DA+ Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDLYLVVAGTKDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244 +MVE E +++ E+V+L+AI+FGH+E K ++ I +L ++ KE + + K+ E+ Sbjct: 184 MMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 + L + I EK+ R + ID + ++ V++F +++ E ++ V DI + Sbjct: 244 RAYAADRLVEAVKIAEKHARQEAIDAVNEETVAHFEAQYIETPELLSDVSEVLYDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ KVR DGR + +R I + +L RTHGS LF RG TQA+ V TLG D Q Sbjct: 304 VRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P +FPYT Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDGD +L+DI G Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI NI+ AL+QA+ GRL IL +M + + + Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMMEAIQKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R QL + P++ M I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IAS++ Sbjct: 544 REQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E AR +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GDT+ VK+ + D +G++ LS K V Sbjct: 664 VIAIGDTITVKVTEIDQQGRVNLSRKAV 691 >gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] Length = 712 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella insecticola LSR1] gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella insecticola LSR1] Length = 698 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/683 (48%), Positives = 460/683 (67%), Gaps = 2/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + +ETG +ARQ++ AV+ + +T V TVV + K GQ+FFPLTVNYQER+ Sbjct: 8 KFQYGQHTVTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLTVNYQERS 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LISR+IDR IRPLF + NE Q+I V+ + E +P Sbjct: 68 YAAGRIPGNFFRREGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSINKEVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LS +PF GP+ A+V +IN QY+LNP E + LDL V+GT AVL Sbjct: 128 IVAMIGASAALSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLDLVVAGTNAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE EA LSE+ +L A+ FGH + + VI I++L + K ++ + KL +S Sbjct: 188 MVESEAKMLSEEQMLGAVSFGHEQQQIVINNINELVEKAGKAKWDWCPEEVNQKLYTTVS 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ + L + I EK R +I+ +K + ++ N E+ + + K+VR Sbjct: 248 ELAEAPLGDAYCIAEKQERYAKINVIKADITQTLLDKNEILNAAEVQDILSYTEKKLVRR 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ K R+D R +T+R + + G+L RTHGS+LF RG+TQA+V TLGT D Q +D Sbjct: 308 RVLECKPRIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTARDAQSLDE 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L G + + F++HYNF P + GE +G+P RREIGHGRLA+RA+ V+P PYT+RI Sbjct: 368 LIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVMPSLDDCPYTVRI 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSDI GDEDH Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGDNFVVLSDILGDEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG+ +GITA+QMD+KI GI+E IM AL QAK HIL+ M + + + R Sbjct: 488 LGDMDFKVAGSRTGITALQMDIKIEGITEKIMEKALHQAKSALSHILDIMEEAIKKPRSD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ + I PD+I++VIG GG VIR + E+T + I+DDGT+KIA+ +I Sbjct: 548 ISQYAPRIHTIKINPDKIKDVIGKGGAVIRALTEETRTTIEIEDDGTIKIAAEDNEKIIY 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A I+ IT PE KIY G+V ++ DFGAFV G R+GLVHISQ++ +R+ D + Sbjct: 608 AIRRIQEITVDPEPGKIYLGKVTRITDFGAFVSCVGGREGLVHISQIAEKRIENIPDHLH 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 G V VK+++ D +G+I+LSMK Sbjct: 668 IGQEVQVKIIEIDRQGRIRLSMK 690 >gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus flavithermus WK1] gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Anoxybacillus flavithermus WK1] Length = 702 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/689 (47%), Positives = 465/689 (67%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGRPL +E G +A+Q++GAVL YG+TVVL+T + K DFFPLTVNY+ Sbjct: 6 HVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKS-VDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF++ ++NE QV+ VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 SP + +M +S AL +S +PFEGP+ G V ++G++V+NP + + +Q + L V+GT+D Sbjct: 125 SPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDMHLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242 A+ MVE AN++ E+V+L+AI+FGH E K +I +A KE + V+ + ++LE Sbjct: 185 AINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQEDIAAKVGKEKMEVVLYELNAELEA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAK 301 E+ ++ +++ + +PEK R I+ LK ++V+ Y E ++ + + + Sbjct: 245 EIRARVEGEVKRAVQVPEKLAREAAIEQLKAEVVAAYEEQEADEETLKQVKEILYKLVKE 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S+ VGLL RTHGS LF RG TQA+ V TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPY Sbjct: 365 ILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPSEKEFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + IL+DI G Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTILTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT+ G+TA+QMD+KI G+S I+ ALQQA++GRL IL M + +SE Sbjct: 485 MEDHLGDMDFKVAGTEKGVTALQMDIKIKGLSREILEEALQQARKGRLEILKHMMQTISE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGT+ I+S + Sbjct: 545 PRKELSPYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSVNEE 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 MNKKAKKIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFSGKDGLVHISELAEERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVV GD + VK+ + D +G++ LS K V Sbjct: 665 DVVSIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ATCC 17978] Length = 662 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/643 (51%), Positives = 448/643 (69%), Gaps = 3/643 (0%) Query: 53 GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ 112 GQDFFPLTVNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q Sbjct: 19 GQDFFPLTVNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQ 78 Query: 113 VIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQ 171 V V+ D + +M+ SAAL ++G PF GP+ A+V ING+YVLNP ++ Q Sbjct: 79 VTATVVSSDKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQ 138 Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI- 230 LDL V+GT+ AVLMVE EA +LSED +L A++FGH+E + I+AI++ A +P Sbjct: 139 SDLDLVVAGTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSD 198 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEG 289 + +L ++ + + + + I K R +D L + V+ F E Sbjct: 199 WVAPAHNEELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIAD 258 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 E+ +FED++ + VR +L K R+DGRD++TVR + QVG+L+R HGS+LF RG+TQA+ Sbjct: 259 EVDYLFEDLKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQAL 318 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TLG D VD+L+GT+ ++FM+HYNF + GE R P RREIGHGRLARR + Sbjct: 319 VTTTLGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGV 378 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 VLP +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+ Sbjct: 379 QAVLPAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKE 438 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA GR+ Sbjct: 439 GERFAVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRM 498 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HILNEM+KV+S +R ++ P E++ I PD+IR+VIG GG IR I E+T A ++I+D Sbjct: 499 HILNEMNKVISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIED 558 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +GTV++ + A +AA I++IT E KIY G+V+++++FGAFV+ DGL+HI Sbjct: 559 NGTVRVFGETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHI 618 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SQ+S ER+A +DV+KEG V V++ D D+RG+IKL+MK ++Q Sbjct: 619 SQISNERIANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 661 >gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] Length = 712 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ET ++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V ING++V+NP +++ +Q + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + L + + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++ + + G++ + I + VR Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTIGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693 >gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum 'So ce 56'] gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56'] Length = 757 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/688 (47%), Positives = 462/688 (67%), Gaps = 17/688 (2%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L LETGR+A+Q+ GAVL TYG+T+VL T V + + G DFFPLT + E+TYA G Sbjct: 10 GGRALTLETGRLAKQAHGAVLVTYGDTMVLVTAV-SQDERPGLDFFPLTCEFVEKTYAAG 68 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+ +RE+R E EIL SR++DR +RPLF + +K +TQ+I V+ D ++ V+++ Sbjct: 69 KIPGGFFKREARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADVLAL 128 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVEL 190 ASAAL +S +P+ GPVVG +V ++G++V P + D ++ +DL V+ ++DA++MVE Sbjct: 129 TGASAALHISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDIDLVVACSRDAIVMVEG 188 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFSKLEEEM 244 A + +E ++DA++F H +PVI+ I K+ K P + D +++ + Sbjct: 189 GAAEATEAEIIDALMFAHETAQPVIDLIEKMRAAVGKPKREFVAPALPD-----EIKRRV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFEDIQA 300 +Q++ EDL+ + + +K R LKKK+ S+E + +G + + FE+ +A Sbjct: 244 AQIVDEDLKAATKVTDKKARYDGYSSLKKKLTETLSAELGAEKLLPLQGLVKAEFEERKA 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VVRT + ++ R+DGRD ++R I +VGLL R HGS+LF RG+TQAIV TLGT DE Sbjct: 304 HVVRTYVTEEGRRIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDE 363 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L G F +HYNF P +TGE + P RREIGHG LA RA+ ++P QFP Sbjct: 364 QKIDGLMGETWKRFYLHYNFPPFSTGETKPLRGPGRREIGHGALAERALSRMIPAPDQFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RIVSE ES+GSSSMA VCG L+LMDAGVPI PVAGIAMGL+ +G+ + +LSDI Sbjct: 424 YTIRIVSETLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYAVLSDIL 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT G+TA+QMD+KI G+S I+ AL QA+ GRLHIL +M + L Sbjct: 484 GDEDHLGDMDFKVCGTARGVTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLETLP 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +R +L ++ PR+ + + PDQIR +IG GGK I+GIV+QTG ++++DDGTV +AS+ Sbjct: 544 TTRPELSQYAPRITTVRVKPDQIRLIIGPGGKTIKGIVDQTGVAIDVEDDGTVNVASADS 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ A ++I+ +T PEV YKG V ++ DFGAFV DGL+HIS+++ RV + Sbjct: 604 DAVKRALDIIKGLTAEPEVGATYKGTVKRITDFGAFVEILPNTDGLLHISEMAHTRVERV 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVKEGD++ VK+L D GKI+LS + Sbjct: 664 EDVVKEGDSLDVKVLSVDREGKIRLSRR 691 >gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM 2912] gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM 2912] Length = 727 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/693 (47%), Positives = 462/693 (66%), Gaps = 10/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E GR L LETG++A+Q+ AV YG+TVVLATV + KD DFFPLTVNY+ Sbjct: 3 HIFETVLGGRRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKD-LDFFPLTVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF + ++NE QV+ V+ D + Sbjct: 62 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDC 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P + M+ SAAL +S +PF+GP+ G V ++GQ+V+NP + + + S + L V+G++ Sbjct: 122 PPEIAGMIGTSAALTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDMHLVVAGSRS 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 AV+MVE AN++ E +LDAI+FGH + +P+I+ ++ + +E IV + + +EE Sbjct: 182 AVVMVEAGANEVPESEMLDAIMFGHEQLQPLIDLQERMRQEIGQEKIV---PELHRPQEE 238 Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + Q ++E L+ + PEK R I ++++ +F+ E +I V DI Sbjct: 239 IVQAVREFATEKLKTAIRTPEKLAREDAIRAVEEETQEHFA-EQFPEGAADIAEVLHDIL 297 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 + VR+ +L++ +R DGR + +R IS +VGLL RTHGS LF RG TQA+ V TLG D Sbjct: 298 KEEVRSAILNEGMRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 357 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + FM HYNF P + GE + APSRR+IGHG L RA+ PV+P +F Sbjct: 358 VQILDGLDLEESKRFMHHYNFPPFSVGEARPIRAPSRRDIGHGALGERALEPVIPSEEEF 417 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI PVAG+AMGLVK+GD IL+DI Sbjct: 418 PYTIRLVSEVLESNGSTSQASICGSTLALMDAGVPIKAPVAGVAMGLVKEGDRVAILTDI 477 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT +G+TA+QMD+KI G++ +I+ AL+QA RGR+ IL +M +V+ Sbjct: 478 QGMEDHLGDMDFKVAGTAAGVTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLEVI 537 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R QL + PR+ M I PD+IR VIG GG+VI I++ TG K++I+ DG + IA+ Sbjct: 538 QQPRQQLSPYAPRIITMRIHPDKIREVIGPGGRVINKIIDDTGVKIDIEQDGRIFIAAVD 597 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E AR+MI I EV Y G+V +V +GAFV ++GLVHISQL+ ERV + Sbjct: 598 QEAGERARKMIEGIVAEVEVGHTYHGRVTRVEKYGAFVEILPGKEGLVHISQLADERVGR 657 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 T DVV+ GD + VK+ + D +G+I LS + V Q Sbjct: 658 TEDVVRVGDEIDVKVTEIDSQGRINLSRREVLQ 690 >gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2] gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2] Length = 698 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/693 (47%), Positives = 457/693 (65%), Gaps = 15/693 (2%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE+ GR L LETGR+A+Q++ AV YG+TVVL TV KD DFFPLTVNY+ER Sbjct: 4 VEMLLGGRTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKD-LDFFPLTVNYEER 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF + ++N+ QV VM D +P Sbjct: 63 LYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNCTP 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDA 184 + +M+ SAAL +S +PF GP+ G V +NGQ+++NP + E + ++FV+ GT+DA Sbjct: 123 EIAAMIGTSAALSISDVPFNGPIGGVNVGRVNGQFIINPTV-EQEAETEIFVTVAGTKDA 181 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSK 239 ++MVE E N+++EDV+L+AI+FGH+E K ++ I +L K + ++++ + Sbjct: 182 IMMVEAEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAAGKPKMEVKLHAVNAEVNAA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFED 297 + S + E +R IPEK+ R ID + V++F ++ E ++ V D Sbjct: 242 VRAFASDKLVEAIR----IPEKHARQDAIDAVNGDTVAHFEEVYAETPELLADVKEVLYD 297 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I + VR ++ KVR DGR E +R I V LL RTHGS LF RG TQA+ + TLG Sbjct: 298 IVKEEVRRLITHDKVRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGAL 357 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D +S + FM HYNF P + GE + P RREIGHG L RA+ V+P Sbjct: 358 GDVQILDGISPEETKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPSET 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+KDGD F ILS Sbjct: 418 EFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILS 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDHLG MDFKVAGT G+TA+QMD+KI GI I+ AL+QA+ GR+HIL +M+ Sbjct: 478 DIQGMEDHLGDMDFKVAGTAQGVTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTA 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+SR L ++ P++ + I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IAS Sbjct: 538 VMSQSRSSLSQYAPKILTLRINPDKIRDVIGSGGKIINKIIEETGVKIDIEQDGMVFIAS 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S+ + A+ +I I + ++Y G V ++ FGAFV +DGLVHISQLSTERV Sbjct: 598 SNEEMNQKAKAIIEGIVKEVVIGEVYLGTVKRIEKFGAFVEILPNKDGLVHISQLSTERV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AK DVV GD + VK+ + D +G+I LS K V Sbjct: 658 AKVEDVVAIGDQITVKVTEIDQQGRINLSRKAV 690 >gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. Fw109-5] gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 722 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/683 (47%), Positives = 460/683 (67%), Gaps = 12/683 (1%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 LETG++A+Q+ G+V G+++VL TVV K+G DFFPLTV+YQE+ +A G++PG + Sbjct: 17 LETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVPGSF 76 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 RRE RPTE E L SR++DRS RPLF++ Y NETQ+I V+ D E+ V+++ ASAA Sbjct: 77 FRREGRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDVLALTGASAA 136 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLS 196 L LS +PF GP+ G +V +NGQ+V NP L + + LD+ ++ ++DA++MVE A ++S Sbjct: 137 LHLSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDVIMAASRDAIVMVEGGAKEVS 196 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMIKEDLRV 254 E V++DA++FG + +++A L K +P K+ L E++ + E ++ Sbjct: 197 EQVMVDALLFGQAAVRELLDAQDALRKATGDKPRRAFDPPKNDVALREKVKALTWEKVKE 256 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQAKVVRT 305 + EK+ R ++ ++KK+++ E + + E EI +ED++ + +R Sbjct: 257 AYARNEKHDRYGRLSEIKKELLQALKEEAAGDAQKLAAIALREKEIKGYYEDVKYEYMRK 316 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D++ R+ GR +R I+++VGLL R HGSSLF RG+TQA+V TLGT EDEQ V+ Sbjct: 317 MITDERRRIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEM 376 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G FM+HYNF P + GEV + +P RREIGHG LA RA+ V+P +FPYT+RI Sbjct: 377 LTGMVFKRFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRQVMPPEDKFPYTVRI 436 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VS+I ES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+K+G+ ILSDI GDEDH Sbjct: 437 VSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDILGDEDH 496 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKV GT GIT++QMD+KIGG++ I+ AL QA GR HIL EM+K ++ R Sbjct: 497 LGDMDFKVCGTAEGITSIQMDIKIGGVTREILERALAQAADGRKHILGEMAKAIATPRES 556 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + PR+ + I P++I+++IG GGK I+ I +TG +NI+DDG+V IAS S ++EA Sbjct: 557 ISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPSQDKVEA 616 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A +MIRS+T E+ K Y G V K+ +FGAFV DGL+HIS+LS +RV SDV+ Sbjct: 617 AIKMIRSLTQEAEIGKTYLGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVLS 676 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 EG+ V VK++ D GKI+LS K Sbjct: 677 EGEEVLVKVISVDRAGKIRLSRK 699 >gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 710 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/694 (45%), Positives = 483/694 (69%), Gaps = 12/694 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE+E G+ L L+TG A+Q++G+VLA YG+T VL TVV +++ K+G DF PLT++YQE+ Sbjct: 3 VELEIKGKKLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 Y+ GKIPGG+ +RE +PT+ EIL+SR+IDR +RPLF + ETQ I +V+ + E+ Sbjct: 63 AYSAGKIPGGFFKREGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIA 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 ++S++ S+AL +S +PF GPV +V + +++LNP DE + S L+L V+GT++AV Sbjct: 123 DILSIIGISSALTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTEEAV 182 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244 MVE A + SE+ +++A+ F H K +I KL ++ K + +I ++++ + Sbjct: 183 TMVEGGAAECSEETLVEALKFAHTHIKKIIALQKKLQQLSGKPKREIISLNGDEEIQKAI 242 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE------HSSWNEG---EIVSVF 295 +I + + F+P+K R + +D+L + + ++E + ++++ EI + F Sbjct: 243 LNIIGGKIENALFLPKKVERQQALDELLNECLQNLNTEEFRQKLYGNFDKDISLEITNAF 302 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + K +R ++ K +R DGR S+ +R I+ +G+L R HGS+LF RG+TQA+V TLG Sbjct: 303 DKVIKKFMRESIVKKGIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLG 362 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T EDEQ VDSL G FM+HYNFLP + GEV + AP RREIGHG LA RA+ V+P Sbjct: 363 TSEDEQKVDSLEGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAERALSYVIPS 422 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VS+I ES+GSSSMATVCG++L+LMDAGVPI PVAG+AMGL+K+GD ++ Sbjct: 423 KDEFPYTIRVVSDILESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVV 482 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT+ GITA QMD+KI GIS I AL+QAK+ RL IL +M Sbjct: 483 LTDILGMEDHYGDMDFKVAGTEKGITAFQMDVKISGISYEIFKKALKQAKQARLFILKKM 542 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVK 594 ++ +SE + +L + PR+ + + P++IR++IG GGKVI+GI+E+TG K++I+D +G VK Sbjct: 543 AETISEPKKELSLYAPRIYKIQVKPEKIRDIIGTGGKVIKGIIEETGVKIDIEDKEGIVK 602 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IASS+ + + A E+I+ IT E+ +IY G+V +++DFGAFV +GL+HISQ++ Sbjct: 603 IASSNESAAQKAIEIIKGITQEAELGRIYMGKVTRIVDFGAFVEIMPGVEGLLHISQIAD 662 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +R+ K S+V+K G+ + VK+++ D+ G+++LS K Sbjct: 663 KRIQKVSEVLKTGEQIPVKVIEIDELGRVRLSRK 696 >gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 705 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/692 (47%), Positives = 464/692 (67%), Gaps = 10/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V I+ Q+++NP +D+ ++ ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 A+ MVE A+++ E+ +L+AI+FGH E K +I ++ KE I +++EE Sbjct: 185 AINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIA---LYEIDEE 241 Query: 244 MSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298 +S +K EDL + + EK+ R I+++K +V+ F EH ++ + + Sbjct: 242 LSDKVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKL 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ V TLG Sbjct: 302 VKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALG 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P Sbjct: 362 DVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKD 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+D Sbjct: 422 FPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTD 481 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGTD G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M Sbjct: 482 IQGMEDALGDMDFKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLAT 541 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 LSESR +L ++ P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGT+ I+S+ Sbjct: 542 LSESRKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISST 601 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV Sbjct: 602 DESSNQKAQKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVG 661 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DVVK GD + VK+ + D +G++ LS K V Sbjct: 662 KVEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|241116894|ref|XP_002401660.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes scapularis] gi|215493204|gb|EEC02845.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes scapularis] Length = 670 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/669 (47%), Positives = 466/669 (69%), Gaps = 3/669 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ L+L TG+IARQ+DGAV G +V+L T V + K+G FFPLT+NY+E YA GK Sbjct: 2 GKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGK 61 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+ +RE + ++ E+L+SR+IDR IRPLF + NET V +V+ +D E+ +++++ Sbjct: 62 IPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAII 121 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 ASAAL LS P+ V ++V ING++VLNP L+ + S LDL V+GT D+V+MVE E Sbjct: 122 GASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVAGTSDSVMMVESE 181 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 A+ LSE+ +L+A+ FG +PVI+ I +LA+ K + + + L++E+ ++ ++ Sbjct: 182 AHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPASLKKEIEKLFVKE 241 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 ++ I K R +D + +K++++F S E+ ++ +I S + I++ ++R +L+ Sbjct: 242 IKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKSIESDILRNEILE 301 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K R+DGR + +R I+ ++GLL HGS+LF RG+TQ++V T GT DEQ VDSL G Sbjct: 302 KNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGE 361 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 + FM++Y F P + EV M APSRRE+GHG+LA RAI+P+LP QFPY++R+V+E Sbjct: 362 YKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAET 421 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 TES+GSSSMATVC SSLALM AGVPI PVAGIAMGL+K+G F +LSDI GDED+ G M Sbjct: 422 TESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLSDILGDEDYFGDM 481 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT GITA+QMD+KI G+ IM +AL+QA+ GRLHIL +M+KV+S+ +L + Sbjct: 482 DFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKVISKPNSELSKN 541 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P + I D+IR++IG GGKVI+ I E +GAK++I DDG+V + +S +++ A + Sbjct: 542 APSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYASDRDKLKVALDK 601 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+ S V+K+GD Sbjct: 602 IKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERIETVSSVLKQGDI 661 Query: 670 VWVKLLDFD 678 V VKL+ FD Sbjct: 662 VKVKLIGFD 670 >gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus thermodenitrificans NG80-2] gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus thermodenitrificans NG80-2] gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] Length = 722 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGRPL +ETG +A+Q++GA L YG+TVVL+T R KD DFFPLTVNY+ER Y Sbjct: 10 IDVAGRPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKD-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF++ ++NE QV+ VM D + SP V Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V I+GQ+V+NP +++ ++ + L V+GT+DA+ M Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDMHLIVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH E K +I ++A KE + V+ + +LE E+ Q Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPELEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+D+K +++ + +E + + ++ + + + VR Sbjct: 249 LAEADIKKAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNEDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ +I+ ALQQA++GRL IL+ M + LSE R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQTLSEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ IM I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S + Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEEANQK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ER+ K D+V Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERIGKVEDIVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D +G++ LS K V Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus curdlanolyticus YK9] gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus curdlanolyticus YK9] Length = 701 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/696 (47%), Positives = 463/696 (66%), Gaps = 15/696 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + VE+ GRPL LETGR+A+Q++ AV YGETVVL TV KD DFFPLTVNY Sbjct: 2 LQKVELTLGGRPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKD-LDFFPLTVNY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF ++N+ Q++ VM D + Sbjct: 61 EEKLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFV--SGT 181 SP + +M+ SAAL +S +PF GP+ G V I+GQ+V+NP ++++ S D+FV +GT Sbjct: 121 CSPEIAAMIGTSAALSISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQS-DIFVVVAGT 179 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKD 236 +DA++MVE EA+++ E V+L+AI+FGH+E K ++++I + + K + +D + Sbjct: 180 KDAIMMVEAEADEVPESVMLEAIMFGHDEIKNIVKSIEEFQSIAGKTKMEVKLHAVDEQV 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSV 294 + + S+ + + +R++ EK+ R ID + + V++F+ ++ E ++ V Sbjct: 240 NADVRAYASERLTQAIRIA----EKHARQDAIDAINVETVAHFNEIYAETPELMDDVKEV 295 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI + VR ++ KVR DGR +R I V LL RTHGS LF RG TQA+ + TL Sbjct: 296 LYDIVKEEVRRLITHDKVRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTL 355 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D Q +D +S + FM HYNF P + GE + P RREIGHG L RA+ V+P Sbjct: 356 GALGDVQILDGISPEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIP 415 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 ++FPYT+R+VSE ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+KDG+ F Sbjct: 416 PESEFPYTIRLVSECLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFS 475 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDHLG MDFKVAGT G+TA+QMD+KI GI I+ AL+QAK GR+HIL + Sbjct: 476 ILSDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIEGIDRAILTQALEQAKEGRMHILGK 535 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M +V+ E R L ++ P++ + I PD+IR+VIG GGK+I I+E+TG K++I+ DG V Sbjct: 536 MLEVMGEPRKNLSKYAPKIMTLRINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGMVY 595 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IASS+ + AR +I I V +IY G V ++ FGAFV +DGLVHISQ+ST Sbjct: 596 IASSNEEMNQKARAIIEGIVKEVVVGEIYLGTVKRIEKFGAFVEILPNKDGLVHISQVST 655 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ER+AK DV+K GD + VK+ + D +G+I LS K V Sbjct: 656 ERIAKIEDVLKIGDQITVKVTEIDQQGRINLSRKAV 691 >gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] Length = 689 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/687 (46%), Positives = 464/687 (67%), Gaps = 7/687 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGRPL +E G++A+Q++GAVL YG+TVVL T ++G DFFPLTV+Y+E+ Sbjct: 5 EMELAGRPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKM 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+++RE RP+ + IL +R+IDR IRPLF K ++N+ Q++ V+ + +++P Sbjct: 65 YAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186 + +M+ AS AL +S +PF GP+ G +V +N ++V+NP ++ + +L+L V+G+ DAV+ Sbjct: 125 LAAMIGASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDAVM 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF---SKLEEE 243 MVE AN+L EDV+LDAI+FGH E K ++E + C KE + K F ++EE Sbjct: 185 MVEAGANELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKS--EPKLFLVPHEMEEA 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + K+ L + P+K R I ++ + +F + ++ EI D++ VV Sbjct: 243 IRDYAKDRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMDK-EIAIAIHDLEKSVV 301 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ +K+R DGR+ E VR +S +VGLL RTHGS LF RG TQ + V TLG+ DEQ + Sbjct: 302 RHMITHEKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVI 361 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L ++ HYNF + GE M +P RREIGHG LA RA+ PV+P +FPYT+ Sbjct: 362 DGLGPETTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTI 421 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVK+GD + IL+DI G E Sbjct: 422 RLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQGME 481 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+K+ G+S I+ ALQQAKRGR IL +M + + + Sbjct: 482 DALGDMDFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPA 541 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PRVE + I D+IR+VIG GGKV++ I+++TG ++I +DG + I S+ + Sbjct: 542 AELSPYAPRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAEGM 601 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A++MI I EV +IY G+V ++M FGAFV ++GL HISQL+ RV K DV Sbjct: 602 KKAKQMIEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDV 661 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD + VK+++ DD+G+I LS K V Sbjct: 662 VQVGDQLQVKVVEIDDKGRINLSHKAV 688 >gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex V453] gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex V453] Length = 701 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE++ GRPL ETGR+A+Q++ AV+ YGET VL TV KD DFFPLTVNY+ER Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF + ++N+ QV+ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +S +PF GP+ G V ++G +V+NP + + + S + L VSGT+DA+ Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDIYLVVSGTKDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244 +MVE EAN++ E+V+L+AI+FGH E K ++ I +L C KE + + ++ + E+ Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNEAVNREV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 L + I EK+ R ID + ++ + F ++ E ++ V DI + Sbjct: 244 RDFAAARLVEAVRIEEKHARQDAIDAINEEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ KVR DGR +R I LL RTHGS LF RG TQA+ V TLG D Q Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P +FPYT Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDGD IL+DI G Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI I+ ALQQAK GR+HIL +M++ + + Sbjct: 484 EDHLGDMDFKVAGTPEGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQQP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R L ++ P++ M I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IAS++ Sbjct: 544 RTSLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASANDEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+ + D +G+I LS K V Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691 >gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. Y412MC10] gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. Y412MC10] Length = 701 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE++ GRPL ETGR+A+Q++ AV+ YGET VL TV KD DFFPLTVNY+ER Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF + ++N+ QV+ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +S +PF GP+ G V ++G +V+NP + E + S + L V+GT+DA+ Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTKDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244 +MVE EAN++ E+V+L+AI+FGH E K ++ I +L C KE + + ++ + E+ Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 + + L + I EK+ R ID + + + F ++ E ++ V DI + Sbjct: 244 REFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ KVR DGR +R I LL RTHGS LF RG TQA+ V TLG D Q Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P FPYT Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDGD IL+DI G Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI I+ ALQQAK GR+HIL +M++ + + Sbjct: 484 EDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R L ++ P++ M I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IASS+ Sbjct: 544 RETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSNDEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+ + D +G+I LS K V Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691 >gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 693 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/686 (46%), Positives = 474/686 (69%), Gaps = 7/686 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG IARQ+ +VLA+ +T VL T+V D + GQ FFPL VNYQERT Sbjct: 8 KFKYGKHNIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLVVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+ RRE RP+ENEILISR+IDR IRPLF K + E Q+I V+ + + +P Sbjct: 68 YAAGRIPGGFFRREGRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISVNPQINPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 ++S++ +SAAL LSGLPF GP+ A++ ++N +Y+LNP +++ + SLDL VSGT++ + Sbjct: 128 IISIIGSSAALCLSGLPFLGPIGAARIGFLNNKYILNPSIEKIKKSSLDLVVSGTKNTIF 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM-- 244 MVE EA+ LSED +L+AI+FGH + +I+ I + K P + K+ K ++++ Sbjct: 188 MVEAEASILSEDNILNAILFGHESQQSLIDNIYLFSDKANKIPNI--YKNIYKPDKQIFN 245 Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 S+ IK+D+ + +I +K R K+++D+K+K+ S + S +I ++ + Sbjct: 246 LISKKIKKDINKAYYILKKKERLKKLNDIKQKVTSELLNNDSQLTSSKIEESIYFLERNI 305 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR +L K+R+DGR + VR I + G+L R HGS+LF RG+TQA+V TLGT D Q Sbjct: 306 VRKRILKGKLRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTSRDAQN 365 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L G + ++F+ HYNF P + GE+ +G+P RREIGHG+LA+R+ V+P FPYT Sbjct: 366 LDDLLGDRTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGKLAKRSFLAVMPNIEDFPYT 425 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI +AGIAMGL+K+ D +IILSDI GD Sbjct: 426 IRLVSEITESNGSSSMASVCGASLALMDAGVPIKSAIAGIAMGLIKENDSYIILSDILGD 485 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED+LG MDFKV+G+ GITA+QMD+K+ GI+ +I+ AL QAK RL IL+ M L Sbjct: 486 EDYLGDMDFKVSGSRLGITALQMDIKVSGITSDIIRSALYQAKSARLKILDIMENTLQIP 545 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + +F PR+ + I P++I++VIG GG +IR + E+TG + I DDG VKI++ + + Sbjct: 546 RSDISKFAPRIYTIKINPEKIKDVIGKGGSIIRMLTEETGTVIEIKDDGIVKISAINGEK 605 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A + I+ IT+ ++ KIY G+V +++DFGAFV ++GL+HISQ+S +R+ K + Sbjct: 606 AKYAIKRIQEITEDIQIGKIYSGKVTRILDFGAFVSIGFGKEGLIHISQISNKRIDKVIN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 +K ++VK+L+ D +G+I+LSMK Sbjct: 666 HLKINQIIFVKVLEVDRQGRIRLSMK 691 >gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5] gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5] Length = 701 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE++ GRPL ETGR+A+Q++ AV+ YGET VL TV KD DFFPLTVNY+ER Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF + ++N+ QV+ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + +M+ SAAL +S +PF GP+ G V ++G +V+NP + E + S + L V+GT+DA+ Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTRDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244 +MVE EAN++ E+V+L+AI+FGH E K ++ I +L C KE + + ++ + E+ Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 + + L + I EK+ R ID + + + F ++ E ++ V DI + Sbjct: 244 REFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ KVR DGR +R I LL RTHGS LF RG TQA+ V TLG D Q Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P FPYT Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDGD IL+DI G Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI I+ ALQQAK GR+HIL +M++ + + Sbjct: 484 EDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R L ++ P++ M I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IASS+ Sbjct: 544 RETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSNDEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+ + D +G+I LS K V Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691 >gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] Length = 712 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/685 (45%), Positives = 466/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGRPL +E G +A+Q++GAVL YG+TVVL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLFS+ ++NE Q++ VM D + SP + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V ++G++V+NP +++ + S + L V+GT+DA+ M Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+++L+AI+FGH + K +I ++A KE + + + +LE E+ Q Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+++K +++ Y E ++ + + + VR Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ I+ AL QA++GR+ IL+ M + + E R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ M I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S + A E Sbjct: 549 LSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV +IY G+V ++ FGAFV +DGLVHIS+L+ ERV + DVV Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS K V Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693 >gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum alkenivorans AK-01] gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum alkenivorans AK-01] Length = 712 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/700 (48%), Positives = 476/700 (68%), Gaps = 15/700 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T+E +PL+++TG++A+Q+ G+V+ +YGET+ L TVV + L+ G DF PL+V YQE Sbjct: 4 TLERNLGDKPLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRPGIDFVPLSVEYQE 63 Query: 66 RTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + YA G+IPG Y RRE RP+E E L +R+IDR IRPLF K ++ ETQVI V+ D E+ Sbjct: 64 KVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQEN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P ++SMV ASAAL +S LPF P+ +V I+G+ V NP + + + L++ V+G++D Sbjct: 124 DPDMLSMVGASAALCISDLPFFTPIACVRVGRIDGELVANPTISQQENCDLNIIVAGSRD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFS 238 V+MVE +SE+ +LDAI FG +P++E +L + + +P+ D + Sbjct: 184 GVVMVEGGGQFISEEEMLDAIYFGQESLEPLLEMQEELMEKAGVPKRSADPVEKDEYLAA 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 K+ E IK+ L ++ +K R I D+KK ++ E+ + G+ VS F Sbjct: 244 KVAELADPEIKKALEIN----DKLERQDAIRDVKKTVMEGLGEEYE--DRGKEVSEFIHD 297 Query: 299 QAKVV-RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + +V+ R ++LD+ R+ GR + VR I+ +VG+L RTHGS+LF RG+TQ++ ++TLG+ Sbjct: 298 RTRVIMRAMVLDEGRRIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSS 357 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ V++L G + FM+HYNF P + EV R+ PSRR+IGHG L+ RAI VLP Sbjct: 358 GDEQRVETLYGDETRPFMLHYNFPPYSVREVKRISGPSRRDIGHGGLSTRAIKEVLPSKE 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 F YT+RIVSEI ES+GSSSMATVC +SLALMD GVPI+ PV+GIAMGL+ +GD ++LS Sbjct: 418 DFDYTIRIVSEILESNGSSSMATVCSASLALMDGGVPITNPVSGIAMGLMAEGDKIVVLS 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDH+G MDFKVAGT GIT++QMD+KI ++ IM AL QA+ GRLHIL +M Sbjct: 478 DILGDEDHMGDMDFKVAGTKDGITSVQMDIKISSLTREIMEKALAQARVGRLHILEKMLT 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +SESR ++ + P+V + I PD+IR++IG GGKVIR I +TG +V++DD G VK+++ Sbjct: 538 TISESREEMSPYAPKVFTIQIHPDKIRDIIGPGGKVIRAIQAETGTRVDVDDSGLVKVSA 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +L E EAA +MI+ IT VPEV +Y+G VVK+MDFGAFV +GL HISQL T+ V Sbjct: 598 VNLEEGEAALQMIKDITAVPEVGAVYEGTVVKIMDFGAFVAILPGTEGLCHISQLDTKHV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696 K SDVVKEG+ + VK+L+ GKI+LS K ++++ GK Sbjct: 658 KKVSDVVKEGEKIKVKVLELTKDGKIRLSRKALLEEENGK 697 >gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] Length = 717 Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust. Identities = 319/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V I+G++V+NP +++ + S + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+ +L+AI+FGH+E K ++ ++ + KE + + + LE+ + + Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDADLEQAVRK 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R + I+++K+++++++ + G++ + I + VR Sbjct: 249 MAEKDMHAAIQVHEKHAREEAINEVKQRVIAHYEEQEVEAEVLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR S+ VR ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT +G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M ++E R + Sbjct: 489 LGDMDFKVAGTANGVTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLTAIAEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S E Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVDQEMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V ++ FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; AltName: Full=Vegetative protein 15; Short=VEG15 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis] gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp. subtilis str. 168] gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. natto BEST195] gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1589234|prf||2210369A polynucleotide phosphorylase Length = 705 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 322/689 (46%), Positives = 461/689 (66%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V I+ Q+++NP +D+ ++ ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A+++ E+++L+AI+FGH E K +I ++ KE I + +L E Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAK 301 ++ + +EDL + + EK+ R I+++K +V+ F EH ++ + + Sbjct: 245 KVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLVKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ V TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPY Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI G Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M LSE Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR +L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGT+ I+S+ + Sbjct: 545 SRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDES 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 GNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] Length = 717 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 317/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGR L +ETG++A+Q++GAVL YG+T VL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S AL +S +PFEGP+ GA V I+G++++NP +++ + S + L V+GT+DA+ M Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+Q+ E+++L+AI+FGH+E K ++ ++ + KE + + + + +++ + Sbjct: 189 VEAGADQVPEEIMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDATINQDVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQAKVVRT 305 M ++D+ + + EK+ R I+++KK+++ ++ ++E G++ + I + VR Sbjct: 249 MAEKDMHAAIQVHEKHAREDAINEVKKRVIEHYEANEADGETLGQVNEILYKIVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R+ Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M ++E R + Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLSAIAEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S E Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIDQEMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V +IY G+V +V FGAFV +DGLVHIS+L+ ERV K DVVK Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVK 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS KV+ Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693 >gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 702 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 325/688 (47%), Positives = 458/688 (66%), Gaps = 5/688 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ GRPL LETGR+A+Q++ AV+ YG+T VL TV KD DFFPLTVNY+E+ Sbjct: 5 VRMDLGGRPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKD-LDFFPLTVNYEEK 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE RP+E IL SR+ DR IRPLF + ++N+ Q++ VM D + P Sbjct: 64 LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + SM+ SAAL +S +PF GP+ G V +NG++V+NP + + + S + + V+GT+DA+ Sbjct: 124 EIASMIGTSAALSISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDIYVVVAGTKDAI 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244 +MVE EAN++ E+V+L+AI+FGH E K ++ I L K+ KE + + ++ + E+ Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAVIEDLVKVAGKEKMQVQLHTVNEEVNREV 243 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 ++ L + I EK+ R ID + + V++F ++ E ++ V DI + Sbjct: 244 RAYAQDRLIEAVKIAEKHARQDAIDAINDETVAHFEEKYIETPELLADVKEVLHDIVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ +KVR DGR + +R I + LL RTHGS LF RG TQA+ + TLG D Q Sbjct: 304 VRRLITHEKVRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + FM HYNF P + GE + AP RREIGHG L RA+ V+P ++FPYT Sbjct: 364 LDGIDLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAG+AMGL+KDG+ IL+DI G Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI I+ AL+QA+ GRL IL++M + + + Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRQILSDALKQAREGRLFILSKMMERIQKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + L + P++ IM I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IAS++ Sbjct: 544 KEHLSPYAPKITIMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVYIASTNEEM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 AR +I I V +IY G V ++ FGAFV +DGLVHISQLSTERVAK D Sbjct: 604 NNKARSIIEGIVKEVVVGEIYVGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GDTV VK+ + D++G+I LS K V Sbjct: 664 VVAIGDTVTVKVTEIDNQGRINLSRKAV 691 >gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] Length = 723 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 322/685 (47%), Positives = 468/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGRPL +ETG +A+Q++GAVL YG+TVVL+T R K+ DFFPLTVNY+ER Y Sbjct: 10 IDVAGRPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL+SR+IDR IRPLF++ ++NE QV+ VM D + +P V Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V ++GQ+V+NP +++ ++ L L V+GT+DA+ M Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH E K +I ++A KE + V+ + LE E+ Q Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+D+K +++ + +E + + ++ + + + VR Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ I+ AL QA++GRL IL+ M + LSE R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ IM I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S A + Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ RV K DVV Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D +G++ LS K V Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum ferrodiazotrophum] Length = 709 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 323/687 (47%), Positives = 462/687 (67%), Gaps = 4/687 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TVE+ G+ +++ETGR+ARQ+DGA + TV++AT V +++K G DF PLTV+YQE Sbjct: 5 TVEVAVGGKTVRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKPGTDFLPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+ +RE +P+E EIL SR++DR +RPLF + + +TQVI +V+ D Sbjct: 65 RAYAAGKIPGGFFKREGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSADRSGL 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDA 184 V+++VAAS AL +S +PF+ P+ +V Y++GQ+V+NP ++ +++ SLDL V+GT DA Sbjct: 125 TDVMAVVAASTALTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLDLVVAGTADA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 ++MVE +A+++SE++ L+AI H C+P+I A +L K K + +L E+ Sbjct: 185 IMMVEGKADEVSEELFLEAIRTAHAACQPIIAAQRELQKKIGKSKRALPQVPVRPELMEK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAK 301 + +E L + +K VR ++ +++ + E E E + F +++ + Sbjct: 245 IRSGGREPLSGILVVSDKKVREEKTSEIRSNLAKELFPEGFADPMQEKEFSNGFHELERE 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R ++LD+ +R DGR + +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT +DEQ Sbjct: 305 LLRAMVLDRGIRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G FM+HYNF + GEV M P RREIGHG LA RA+ PVLP FPY Sbjct: 365 RIDSLEGESHKRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNLAERALIPVLPSKDDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 ++R+VS+I ES+GS+SMATVCG +LA+MDAG+PI PVAGIAMGL+K+GD ILSDI G Sbjct: 425 SIRLVSDILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGDRIAILSDILG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKV GTD G+TA+QMD+KI GI+ IM AL+QA+ GR+HI+ +M + L Sbjct: 485 IEDHLGDMDFKVTGTDIGVTAVQMDIKIKGITLEIMKKALEQARVGRIHIMGKMKEALPS 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R Q+ + PR+ + I D+IR VIG GGK+IR I E+TGAK+ I+D G + +AS+ Sbjct: 545 VRSQMSPYAPRIMTIQIKQDKIREVIGPGGKMIRSITERTGAKIEIEDSGVIHVASADEE 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A E+I I EV KIY G+V V ++GAFV GL H+SQL RV K + Sbjct: 605 AAKKAIEIIHQIVAEAEVGKIYLGKVKTVAEYGAFVEIMPGTTGLCHVSQLEPRRVEKVT 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV EGD + VK+L+ D +GKI+LS K Sbjct: 665 DVVNEGDEIVVKVLEVDRQGKIRLSRK 691 >gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] Length = 746 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 324/707 (45%), Positives = 469/707 (66%), Gaps = 19/707 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ GR L +ETGR+A+Q+ GAVL YG+TVVL+T R+L++G DFFPLTV Y+ER Sbjct: 7 ELNIGGRVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPGG+++RE+RP+EN IL R+IDRSIRPLF K ++NETQ+I +M D + +P Sbjct: 67 YAVGRIPGGFIKREARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ SAAL +S PF GP+ G V ++G+ ++NP + S L L V+GT+DAV+ Sbjct: 127 MAAMIGTSAALTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSDLHLVVAGTKDAVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE--EM 244 MVE AN+++E+V+LDAI +GH+ + +++ I + + ++ + +F+ EE E+ Sbjct: 187 MVEAGANEVTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQLAKPKLEFAAPEENQEL 246 Query: 245 SQMIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + I E + + +K R D+LK ++V F+ ++ +I +F Sbjct: 247 IEAIGETMEAEIKMAVRKCVEERMDKKTREAFFDELKDRLVLEFAEQYPEQVS-DIKDLF 305 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 I+ K+VR +++ ++RMDGR + VR IS + G+L RTHGS LF RG TQ + VVTLG Sbjct: 306 RKIEKKLVRQLIVKDRIRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLG 365 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 +EQ +D L + +M HYNF P +TGE M +P RREIGHG LA RA+ P++P Sbjct: 366 AISEEQILDGLGTEESKRYMHHYNFPPFSTGETKMMRSPGRREIGHGALAGRALEPMIPG 425 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE ES+GS+SM +VCGS+LALMDAGVPI PV+G+AMGL+K+ D+ ++ Sbjct: 426 EEEFPYTIRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKEDDEIVV 485 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT GI A+QMD+K+ G+++ I+ ALQQA GR+HI+ +M Sbjct: 486 LTDIQGLEDALGDMDFKVAGTAKGINALQMDIKVAGVTQEILEKALQQAYTGRMHIMGKM 545 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +V+S R +L ++ P + I PD+IR+VIG GGK I+ IVE+TGA ++I+DDG V + Sbjct: 546 MEVISAPRQELSKYAPMIIHTTINPDKIRDVIGPGGKTIKKIVEETGANIDIEDDGRVFV 605 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649 A+ + A +I +T + +IY G+VVK+MDFG FV ++GLVHI Sbjct: 606 AAVDREAGQKALSIIEKLTQEVVIGQIYLGRVVKIMDFGCFVEIIPGVLGLPGKEGLVHI 665 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SQL+ +RV K DVV EGD + VK + D+ G++KLS K GK Sbjct: 666 SQLAHQRVNKVEDVVAEGDMILVKAIGNDNMGRLKLSKKEAMPQEGK 712 >gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens TA208] gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens LL3] Length = 707 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 321/689 (46%), Positives = 460/689 (66%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V I+GQ+++NP +D+ ++ ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A+++ E+++L+AI+FGH E K +I ++ KE I+ + ++L E Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301 ++ + + DL + + EK+ R I+ +K +V+ F E H ++ + Sbjct: 245 KVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ V TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPY Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI G Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M L E Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR +L ++ P++ M I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ + Sbjct: 545 SRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 SNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] Length = 705 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 321/689 (46%), Positives = 460/689 (66%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V I+GQ+++NP +D+ ++ ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A+++ E+++L+AI+FGH E K +I ++ KE I+ + ++L E Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301 ++ + + DL + + EK+ R I+ +K +V+ F E H ++ + Sbjct: 245 KVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ V TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPY Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI G Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M L E Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR +L ++ P++ M I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ + Sbjct: 545 SRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 SNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae DSM 11293] gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae DSM 11293] Length = 697 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 326/686 (47%), Positives = 458/686 (66%), Gaps = 6/686 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V + GR L LETGR+A+Q++GAV A Y + VLATV S + DF PL V Y Sbjct: 3 HQVTVSIGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEYN 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+L+RE RP + EIL+SR+IDR +RPLFSK +K E Q+I + D + Sbjct: 63 EKYYAAGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQIN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +V+M AASAA+ +S +PF GPV ++ ++ + ++NP D+ + +L++ VSGT+D Sbjct: 123 PPDIVAMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLE 241 + MVE A ++ E+++L AI K + EA +L + KE P+V++ K + Sbjct: 183 GITMVEGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPLVVEEKKLER-R 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +EM + +CF+ K R + +K + F+ + + NE ++ E+++ K Sbjct: 242 QEMWDFAYPKMEEACFVKGKMNRGAAVKAVKTETAEAFADDLNEDNERLFNALMEEMETK 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +LDK VR DGRD ETVR I+ +VG+L R HGS+LF RG+TQ++ V TLGT DEQ Sbjct: 302 VVRSSILDKGVRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQ 361 Query: 362 YVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D++ G + +FM+HYNF P + GE R+ RREIGHG LA RA+ VLPQ FP Sbjct: 362 MMDNIDGDKTYENFMLHYNFPPFSVGETGRL-TTGRREIGHGHLAHRALEAVLPQKKDFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEI ES+GSSSMATVCG +L+L+ AGVPI KPVAGIAMGLV +GD +L+DI Sbjct: 421 YTIRVVSEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAVLTDIL 480 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G+EDHLG MDFKVAGT+ GITA QMD+KI GIS ++M AL+QAK+GR+HIL M+ L Sbjct: 481 GEEDHLGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATLK 540 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E + +F P++ + + D+I +IG GGK I+ I EQ+G++VNIDD+GTV I + Sbjct: 541 EPVSDVSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSEVNIDDNGTVTIFGKTK 600 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + E ARE I++I + PEV KIY+G V ++MDFGAFV ++GL HIS+LS +RV Sbjct: 601 EKAEKAREFIKAIVEEPEVGKIYEGTVKRIMDFGAFVEILPGKEGLCHISKLSRKRVNSV 660 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLS 686 SDV+ + VKL++ D +G++ LS Sbjct: 661 SDVLAVDQKIPVKLIEIDRQGRLNLS 686 >gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Gardel] gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Gardel] Length = 789 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 342/709 (48%), Positives = 483/709 (68%), Gaps = 13/709 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV ++ K+ DF PLT Sbjct: 1 MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGKA-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF + +E ++ N++ + Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177 D + P V +++ A+AAL +SG+PF G VVGA+V Y+ +Y+LN DE SLDLF Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237 +SG +D+VLMVE EA++LSE +L AI FGH C+ VI+ I + + P D Sbjct: 180 LSGNKDSVLMVESEASELSESQMLAAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289 + L ++++ E ++ K R +++ L+ +++S +++ ++ Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 +I+S + + +VR+ +++ R+DGR +RDI ++ +L +THGS+LF RG+TQA+ Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+K+ Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS ++ +L QAK GR+ Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL++M+ V+ ESR + PR+E + I D+IRNVIG GGK IR I E+TGA+V I Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DGTV I + + +E A+ MI I PE+ K++ G V++++ FGAFV F G + GL+HI Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 S++ E + V+ D V V ++ DR ++LSM+ VDQ TG+PI Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGI-DREYVQLSMRRVDQETGEPI 707 >gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 712 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 314/685 (45%), Positives = 466/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGRPL +E G +A+Q++GAVL YG+TVVL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLFS+ ++NE Q++ VM D + SP + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V ++G++V+NP +++ + S + L V+GT+DA+ M Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+++L+AI+FGH + K +I ++A KE + + + +LE ++ Q Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAKIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+++K +++ Y E ++ + + + VR Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ I+ AL QA++GR+ IL+ M + + E R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ M I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S + A E Sbjct: 549 LSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNEK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV +IY G+V ++ FGAFV +DGLVHIS+L+ ERV + DVV Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+++ D +G++ LS K V Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693 >gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans C-125] gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125] Length = 704 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 328/689 (47%), Positives = 460/689 (66%), Gaps = 6/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAVL YG+T VL+T + KD FFPLTVNY+ Sbjct: 6 HEFSIDWAGRKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA GKIPGG+++RE RP+E IL SR+IDR IRPLF + ++NE QVI VM D + Sbjct: 65 ERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +MV +S AL +S +PFEGP+ G V I+GQ+V+NP D+ ++ + L V+GT+D Sbjct: 125 SSEMAAMVGSSLALSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDIHLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241 A+ MVE A ++ EDV+L+AI+FGHNE K +IE K+A K +V+ D LE Sbjct: 185 AINMVEAGAEEVPEDVMLEAIMFGHNEIKRLIEFQEKIAAEVGKSKTDVVLKQVD-PMLE 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +E+ +EDL+ + +PEK+ R I+ + K++ + ++ E+ + I + Sbjct: 244 QEVRVKAEEDLKQAVQVPEKHARQDAIEAVMDKVLETYE-DNEDVPLSEVNEILHKIVKE 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ +K+R DGR+ + +R +S+QVG+L RTHGS LF RG TQA+ + TLG D Q Sbjct: 303 EVRRLITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE + P RREIGHG L RA+ PV+P FPY Sbjct: 363 ILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEQDFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK + +L+DI G Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVLTDIQG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT G+TA+QMD+KI GI I+ AL+QA++GR+ IL+ M + +SE Sbjct: 483 MEDALGDMDFKVAGTRKGVTALQMDIKISGIDRAILEQALEQARKGRMIILDNMLEAISE 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR +L + P++ M I PD+IR+VIG GK+I I+E TG K++I+ DGT+ I+S+ Sbjct: 543 SRSELSPYAPKILTMTINPDKIRDVIGPSGKMINKIIEDTGVKIDIEQDGTIYISSADTN 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ARE+I I EV ++Y G V ++ FGAFV +DGLVHISQL+ ERV K Sbjct: 603 MNNKAREIIEDIVREVEVGQMYLGTVKRIEKFGAFVELFKGKDGLVHISQLAEERVNKVE 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+++ D++G++ LS K V Sbjct: 663 DVVKIGDEILVKVMEIDNQGRVNLSRKAV 691 >gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii str. Madrid E] gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia prowazekii] Length = 745 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 325/691 (47%), Positives = 477/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L++ TG+IARQ++ AV G +++L T V +KDG FFPLT Sbjct: 1 MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V +V+ + Sbjct: 61 INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + +++++ ASAAL +S P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+D+V+MVE EA+ LSED +L+A+ FG + VI+ I +LAK K + S Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R + + +K++++F E+ +N +I S + Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I A ++R +L+K +R+DGR + +R I+ +VGLL HGS+LF RG+TQ++V T GT Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+ + F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT SGITA+QMD+KI GI I+ +AL+QA+ GRLHIL +M+K Sbjct: 481 DIIGDEDYFGDMDFKVAGTSSGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+I+++IG GGK+I+ I E + AK++I DDGTV I + Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +I+ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S R+ Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K S V+K+GD V VKL+ FD++GK KL++K Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691 >gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 789 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 342/709 (48%), Positives = 483/709 (68%), Gaps = 13/709 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV ++ K+ DF PLT Sbjct: 1 MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGKA-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF + +E ++ N++ + Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177 D + P V +++ A+AAL +SG+PF G VVGA+V Y+ +Y+LN DE SLDLF Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237 +SG +D+VLMVE EA++LSE +L AI FGH C+ VI+ I + + P D Sbjct: 180 LSGNKDSVLMVESEASELSESQMLGAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289 + L ++++ E ++ K R +++ L+ +++S +++ ++ Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 +I+S + + +VR+ +++ R+DGR +RDI ++ +L +THGS+LF RG+TQA+ Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VV LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+K+ Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS ++ +L QAK GR+ Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL++M+ V+ ESR + PR+E + I D+IRNVIG GGK IR I E+TGA+V I Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DGTV I + + +E A+ MI I PE+ K++ G V++++ FGAFV F G + GL+HI Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 S++ E + V+ D V V ++ DR ++LSM+ VDQ TG+PI Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGI-DREYVQLSMRRVDQETGEPI 707 >gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus kaustophilus HTA426] gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Geobacillus kaustophilus HTA426] Length = 723 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 467/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGRPL +ETG +A+Q++GA L YG+TVVL+T R K+ DFFPLTVNY+ER Y Sbjct: 10 IDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL+SR+IDR IRPLF++ ++NE QV+ VM D + +P V Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V ++GQ+V+NP +++ ++ L L V+GT+DA+ M Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH E K +I ++A KE + V+ + LE E+ Q Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+D+K +++ + +E + + ++ + + + VR Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ I+ AL QA++GRL IL+ M + LSE R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ IM I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S A + Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ RV K DVV Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D +G++ LS K V Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens FZB42] gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42] Length = 707 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 322/692 (46%), Positives = 462/692 (66%), Gaps = 10/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +E G++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V I+G++V+NP +D+ ++ ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 A+ MVE A+++ E+++L+AI+FGH E K +I ++ KE I+ +++EE Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIE---LYEIDEE 241 Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDI 298 +S+ +K DL + + EK+ R I+++K +V+ F E H ++ + Sbjct: 242 LSEKVKSLAEPDLLSAIQVHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKL 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ V TLG Sbjct: 302 VKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALG 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P Sbjct: 362 DVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKD 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+D Sbjct: 422 FPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTD 481 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT+ G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M Sbjct: 482 IQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLST 541 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L ESR +L ++ P++ M I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ Sbjct: 542 LGESRKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISST 601 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV Sbjct: 602 DESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVG 661 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DVVK GD + VK+ + D +G++ LS K V Sbjct: 662 KVEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. Y412MC61] gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC61] gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] Length = 723 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 467/685 (68%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AGRPL +ETG +A+Q++GA L YG+TVVL+T R K+ DFFPLTVNY+ER Y Sbjct: 10 IDVAGRPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL+SR+IDR IRPLF++ ++NE QV+ VM D + +P V Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S AL +S +PFEGP+ G V ++GQ+V+NP +++ ++ L L V+GT+DA+ M Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH E K +I ++A KE + V+ + LE E+ Q Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 + + D++ + +PEK R I+D+K +++ + +E + + ++ + + + VR Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + +R +S+ VG+L RTHGS LF RG TQ + V TLG D Q +D Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF P + GE M P RREIGHG L RA+ PV+P +FPYT+R+ Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK+ D + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G++ I+ AL QA++GRL IL+ M + LSE R + Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ IM I PD+IR VIG GK I I+++TG K++I+ DGT+ I+S A + Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ RV K DVV Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D +G++ LS K V Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693 >gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] Length = 719 Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust. Identities = 336/712 (47%), Positives = 473/712 (66%), Gaps = 24/712 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + ++ + LETG +ARQ+ GAVL T +TVVL +VV +++K GQDFFPLT Sbjct: 1 MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ VM Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E + +M+ ASAAL +SGLPF GP+ A+V Y NG Y+LNP E + S LDL V+ Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID------ 233 GT AVLMVE EA +L E V+L A++FGH++ + I+AI++LA P++ D Sbjct: 181 GTHRAVLMVESEAKELPEAVMLGAVVFGHDQLQAAIKAINELADEV--NPVMWDWSAPAQ 238 Query: 234 -SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + +K+ E + I R+ V + D+K +++ E + EI Sbjct: 239 NDELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALIN---EETDTLTANEIK 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +F+ ++A++VR +L + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV Sbjct: 296 GIFKSLEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVT 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DEQ +D+L+G + FM+HYNF P +TGE RMG P RREIGHGRLA+RA+ V Sbjct: 356 TLGTQRDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQV 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +F Y++R+VSEITES+GSSSMA+VCG LAL++AGVP+ VAGIAMGL+ +G+ Sbjct: 416 LPSADEFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNR 475 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK GRLHIL Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHIL 535 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M + + E QL PR+ +M I PD+IR VIG GG+ IR I + TG ++NI++DGT Sbjct: 536 GLMKEAV-EGPQQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGT 594 Query: 593 VKIASSS--------LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 + IAS + + EA R R ++ + ++G+ + + GA V +D Sbjct: 595 ITIASVTQXXXXKVLMPXQEAHRGNHRRSRSRQDLRR-HRGEDSR-HNVGAIVSILPGKD 652 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 GLVHISQ++ ER+ SD +KEG V VK ++ DDRG+I+LS+K + ++ K Sbjct: 653 GLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEDEAK 704 >gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii Rp22] Length = 745 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 324/691 (46%), Positives = 476/691 (68%), Gaps = 3/691 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W G+ L++ TG+IARQ++ AV G +++L T V +KDG FFPLT Sbjct: 1 MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V +V+ + Sbjct: 61 INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + +++++ ASAAL +S P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+D+V+MVE EA+ LSED +L+A+ FG + VI+ I +LAK K + S Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R + + +K++++F E+ +N +I S + Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I A ++R +L+K +R+DGR + +R I+ +VGLL HGS+LF RG+TQ++V T GT Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGLVK+ + F +LS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI GI I+ +AL+QA+ GRLHIL +M+K Sbjct: 481 DIIGDEDYFGDMDFKVAGTSQGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+S+ +L + P + I D+I+++IG GGK+I+ I E + AK++I DDGTV I + Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +I+ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S R+ Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K S V+K+GD V VKL+ FD++GK KL++K Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691 >gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str. Wilmington] gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington] Length = 745 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 322/691 (46%), Positives = 477/691 (69%), Gaps = 3/691 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T + W + L++ TG+IARQ+D AV G +++L T V +KDG FFPLT Sbjct: 1 MFNEITKSVIWNRQVLEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E Y+ GKIPGG+L+RE + ++ EIL+SR+IDR IRPLF + + +ET + +V+ + Sbjct: 61 INYREMAYSAGKIPGGFLKREGKASDKEILVSRLIDRPIRPLFHQAFIHETHITCSVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ +++++ ASAAL +S P+ V ++V ING++VLNP L+ + S LDL V+ Sbjct: 121 DPETPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+D+V+MVE EA+ LSE+ +L+AI FG + VI+ I + AK K + S Sbjct: 181 GTKDSVMMVESEAHLLSEEKMLEAIKFGFENFQTVIKLIKEFAKEAKKPKFEMQDLYPSS 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297 L++E+ ++ +++ + I K R + + +K++++F E+ +N +I S + Sbjct: 241 LKKEIGKLFAKEIEQAFAIKSKQERNANLALIHEKVLTHFVCDIENKKYNNYQIESTLKA 300 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I A ++R +L++ +R+DGR + +R I+ +VGLL HGS+LF RG+TQ++V T GT Sbjct: 301 ISADILRNKILEQNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ VDSL G + FM++Y F P + E M APSRRE+GHG+LA RAI+P+LP Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI PVAGIAMGL+K+GD F ILS Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLIKEGDKFAILS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDED+ G MDFKVAGT GITA+QMD+KI GI I+ +AL+QA+ GRLHIL +M+K Sbjct: 481 DIIGDEDYFGDMDFKVAGTSKGITALQMDIKISGIDFKIIQVALEQARHGRLHILEQMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++S+ +L + P + I D+I+++IG GGK+I+ I E + AK++I DDGTV + + Sbjct: 541 IISKPNSELSKNAPSSTTIKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSVYA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +I+ A + I++I PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S R+ Sbjct: 601 ADRDKIKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISETRI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K S V+K+GD V VKL+ FD++GK KL++K Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691 >gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] Length = 722 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 325/695 (46%), Positives = 468/695 (67%), Gaps = 9/695 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + +V +E+ G+ ++++TG++ARQ+ AV+ G+ V+L T V + K+G DFFPLTVNY Sbjct: 1 MESVSVEFGGKIIEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E+ Y+ G+IPGG+ +RE P+++E LISR+IDR +RPLF Y NETQVI VM D E Sbjct: 61 IEKRYSSGRIPGGFKKREGMPSDDETLISRLIDRPLRPLFPDGYFNETQVIATVMSSDGE 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + V++M A+ AL +S +PF GP+ ++ I+GQ+VLNP + +Q +D+ ++ T+ Sbjct: 121 TPADVLAMYGAATALHISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSDMDISLAATR 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDF 237 DA+LM+E A ++S+ +LDA+ FG E +++A +L A P ++ + Sbjct: 181 DAILMIEAGAKEVSDQDILDAVAFGQREMGRLLDAQEQLRTQAGTPKRAFTPQLVRDEVR 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID-DLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + E+ + +++ L + E Y Q DL++ + E + + E + F Sbjct: 241 GAVREQFAGRLRDALAAGGKM-EVYSAIDQTKKDLQEHFAAVLGEEEFAAQKKEYMRAFG 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ ++R +LD+ R+DGR VR IS L RTHGS LF RG+TQAIVV TLGT Sbjct: 300 DLERDIMRGRILDEGKRVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGT 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ+V++L G +R+++M HYNF P GE + +P RREIGHG LA+RAI VLPQ Sbjct: 360 VSDEQFVENLEGERRSNYMFHYNFPPYCVGEAGFLRSPGRREIGHGALAKRAIEAVLPQG 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPI V+GIAMGL+ +GD F +L Sbjct: 420 EDFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDHLG MDFKVAGT GIT++QMD+K+ GI+ IM A++QA GR+HIL+ M+ Sbjct: 480 TDILGIEDHLGDMDFKVAGTSRGITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMN 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + L R +L PR+ + + PD+IR++IG GGKVIRGIVEQTGAK++IDDDG +A Sbjct: 540 EALDTHRPELNPHAPRIVTIYVKPDKIRDIIGTGGKVIRGIVEQTGAKIDIDDDGRCLVA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S++ ++ A +I+ I + PE+ K YKG+V KV +FGAFV F +DGL+HISQ+ +R Sbjct: 600 SANKESLDMAVAIIQGILEEPEIGKTYKGKVKKVAEFGAFVEFLPNQDGLLHISQIDHKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 V + SDV++EGD + V+L++ D + GK KLS K + Sbjct: 660 VERVSDVLQEGDELEVQLIEVDSKTGKYKLSRKAL 694 >gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia floridanus] gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome [Candidatus Blochmannia floridanus] Length = 697 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 320/689 (46%), Positives = 467/689 (67%), Gaps = 4/689 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + L TG IARQ++ AV+ + G+T VL TVV K Q FFPL V+YQERT Sbjct: 8 KFQYGQHTVVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLVVHYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ RRE RP+E+EIL SR+IDR IRPLF K + N+ Q+I V+ + + P Sbjct: 68 YAAGKFPGGFFRREGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSVNPQIHPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +V+M+ SAAL LS +PF GP+ A+V YI QY+LNP E S LDL V+GT +L Sbjct: 128 IVAMIGVSAALSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVAGTDSNIL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE A LSE +L+AI+FGH + + VI+ I++L K K KD L E +S Sbjct: 188 MVESAACVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKAGKVKYDWKLKDMDILLSEYLS 247 Query: 246 QMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVV 303 + + + VSC + K R +Q++++K ++ E++ + + E++S +++ K++ Sbjct: 248 NLYRSRVNVSCLVGVNKKDRQEQLNNIKHDIIDITLREYNENIDVNEVMSFLNNLEIKLL 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L VR DGR + +R+I G+L RTHGS+LF RGDTQA+V TLGT D Q + Sbjct: 308 RSSILRDNVRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTERDAQNL 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+G + + F++HYNF P TGE+ +GAP RREIGHGRLA+R + V+P + +FPYT+ Sbjct: 368 DELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNSNEFPYTV 427 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+TES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+ +FIILSDI DE Sbjct: 428 RVVSEVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIILSDIISDE 487 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH+G MDFKV+GT +GITA+QMD+KI GI+ +I+ ++ ++A+ L IL+ M +V+ R Sbjct: 488 DHIGDMDFKVSGTRTGITALQMDIKIKGITYDIIEVSFKKARCALLRILDIMDQVIKIPR 547 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 + EF PR+ + I PD+I++VIG GG VIR + E+T ++I+DDG +K+ S + + Sbjct: 548 KDISEFAPRIYSIKINPDKIKDVIGKGGSVIRALTEKTSTIIDIEDDGVIKVISLNAEKA 607 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A + I+ IT + IY G+V ++DFGAFV ++GLVHISQ++ +RV + SD Sbjct: 608 KQAVDRIQEITANIAIGSIYTGRVTHIVDFGAFVTLFAGKEGLVHISQITEKRVNRVSDY 667 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K G V VK+L+ D +G+++LSM+ ++ Sbjct: 668 LKLGQEVLVKVLEIDRQGRMRLSMRGINH 696 >gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 721 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 319/688 (46%), Positives = 457/688 (66%), Gaps = 12/688 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + LETG++A+Q+ G+V G+++VL T V K+G DFFPLTV+YQE+ +A G+ Sbjct: 12 GKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI V+ D E+ V+++ Sbjct: 72 VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191 ASAAL +S +PF GP+ G +V + GQ V NP L + LD+ ++ ++DA++MVE Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAIVMVEGG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMIK 249 A ++SE V+++A++FG +P+++A L +P K+ +L ++ + Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAKVKALTW 251 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQA 300 E ++ + EK+ R ++ ++KK+++ E + + E EI +ED++ Sbjct: 252 EKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGYYEDVKY 311 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++ D++ R+ GR +R I+ +VGLL R HGSSLF RG+TQA+V TLGT EDE Sbjct: 312 DYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDE 371 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q V+ L+G FM+HYNF P + GEV + +P RREIGHG LA RA+ V+P QFP Sbjct: 372 QRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFP 431 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VS+I ES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+K+G+ ILSDI Sbjct: 432 YTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDIL 491 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT +GIT++QMD+KIGG++ I+ AL QA GR HIL EM+K LS Sbjct: 492 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKALS 551 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + + PR+ + I P++I+++IG GGK I+ I +TG +NI+DDG+V IAS + Sbjct: 552 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPNQ 611 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++E A +MIR +T EV +IY G V K+ +FGAFV DGL+HIS+LS +RV Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKSV 671 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDV+ EG+ V VK++ D GKI+LS K Sbjct: 672 SDVLSEGEEVMVKVISVDRSGKIRLSRK 699 >gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 705 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 332/701 (47%), Positives = 456/701 (65%), Gaps = 11/701 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V VE++ AGRPL LETGR+A+Q++ +VL YG+TVVL TV KD DFFPLTVNY Sbjct: 2 VKIVEMDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF + ++NE QV+ VM D E Sbjct: 61 EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQE 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 SP + +M SAAL +S +PF GP+ G V I+G++V+NP ++ S + L V+GT+ Sbjct: 121 CSPEIAAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTK 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 DA++MVE A ++ E+V+L+AI+FGH + K ++ + + + + +++E Sbjct: 181 DAIMMVEAGAAEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEEAGVPKMEVQ---LHQVDE 237 Query: 243 EMSQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296 E++ ++E +PEK+ R + ID + + +F+S E ++ V Sbjct: 238 EINAKVREFASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEVLH 297 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI + VR ++ +KVR DGR + +R I + LL RTHGS LF RG TQA+ V TLG Sbjct: 298 DIVKEEVRRLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGA 357 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D L + FM HYNF P + GE + AP RREIGHG L RAI V+P Sbjct: 358 LGDVQILDGLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIPSE 417 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI PVAGIAMGL+KDG F IL Sbjct: 418 EEFPYTIRLVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFSIL 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDHLG MDFKVAGT G+TA+QMD+KI GI +I+ AL QAK GR+ IL +M Sbjct: 478 TDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEKML 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +S+ + +L + P++ M+I PD+IR+VIG GGK+I I+E+TG K++I+ DG V IA Sbjct: 538 SRISDPKKELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIA 597 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+ + A+E+I I V + Y G V ++ FGAFV ++GLVHISQLS ER Sbjct: 598 SSNEQMNQKAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSIER 657 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 VAK DVV GD + VK+ + D++G+I LS K N KP Sbjct: 658 VAKVEDVVSIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 698 >gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21] gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21] Length = 703 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 317/695 (45%), Positives = 461/695 (66%), Gaps = 3/695 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M +HT E GRPL +ETG+IA+Q++G+VL YGET V+ V + ++G DFFPLT Sbjct: 9 MQRMHTFSTELGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLT 68 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+++E+ YAVGKIPGG+LRRE RP E IL SR+IDR IRP+F Y N+ Q++ + Sbjct: 69 VDFEEKMYAVGKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSV 128 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D +++P + +M+ AS AL +S +PFEGP+ G +V ++G++++NP L++ S +++ V+ Sbjct: 129 DPDNAPDIPAMIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVA 188 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238 GT++A+LMVE A ++SE V+LDAI+FGH E K ++ ++ K + Sbjct: 189 GTKEAILMVEAGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPE 248 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L +E+ + + + + P+K R K + + K+ ++ +F E +E +I + + + Sbjct: 249 ALSKEIMEYGEPKIHDALMDPDKLHRDKMVSETKEAILEHFV-ELYPESEIDIAHIVQKL 307 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 KV R ++ K+R DGR + VR IS +VGLL R HG SLF RG TQ + + L Sbjct: 308 VKKVFRHIITHDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLR 367 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D L ++ HYNF P + GE + +P RREIGHG LA RA+ PV+P + Sbjct: 368 EAQTLDGLGTELTKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEE 427 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI PV+G+AMGLVK+GDD IL+D Sbjct: 428 FPYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDITILTD 487 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED G MDFKVAGT+ GITA+QMD+KI GI+ I AL+QA++GR +IL +M + Sbjct: 488 IQGLEDANGDMDFKVAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLEC 547 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + R L E P++ + I PD+I++VIG GGKVI+ I E++GAK++I++DGTV +A++ Sbjct: 548 IPAPRPSLKEHAPKITTLKINPDKIKDVIGPGGKVIKKITEESGAKIDIEEDGTVYVAAA 607 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A A E I +IT PE+ KIY G+V ++M+FGAFV F R+GLVHISQL+ ERV Sbjct: 608 DQASANKAIEAINAITAEPEIGKIYTGKVTRLMNFGAFVEFMPGREGLVHISQLAKERVE 667 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K DVV GD + VKL++ D +G++ LS K Q+ Sbjct: 668 KVEDVVNVGDEIVVKLVEIDAKGRMNLSRKAALQS 702 >gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 749 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 319/689 (46%), Positives = 457/689 (66%), Gaps = 12/689 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 G+ + LETG++A+Q+ G+V G+++VL T V K+G DFFPLTV+YQE+ +A G Sbjct: 39 GGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAG 98 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 ++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI V+ D E+ V+++ Sbjct: 99 RVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLAL 158 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190 ASAAL +S +PF GP+ G +V + GQ V NP L + LD+ ++ ++DA++MVE Sbjct: 159 TGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAIVMVEG 218 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMI 248 A ++SE V+++A++FG +P+++A L +P K+ +L ++ + Sbjct: 219 GAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAKVKALT 278 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQ 299 E ++ + EK+ R ++ ++KK+++ E + + E EI +ED++ Sbjct: 279 WEKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGYYEDVK 338 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R ++ D++ R+ GR +R I+ +VGLL R HGSSLF RG+TQA+V TLGT ED Sbjct: 339 YDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAED 398 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ V+ L+G FM+HYNF P + GEV + +P RREIGHG LA RA+ V+P QF Sbjct: 399 EQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQF 458 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VS+I ES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+K+G+ ILSDI Sbjct: 459 PYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDI 518 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT +GIT++QMD+KIGG++ I+ AL QA GR HIL EM+K L Sbjct: 519 LGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKAL 578 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R + + PR+ + I P++I+++IG GGK I+ I +TG +NI+DDG+V IAS + Sbjct: 579 SAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPN 638 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++E A +MIR +T EV +IY G V K+ +FGAFV DGL+HIS+LS +RV Sbjct: 639 QDKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKS 698 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDV+ EG+ V VK++ D GKI+LS K Sbjct: 699 VSDVLSEGEEVMVKVISVDRSGKIRLSRK 727 >gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus carboxydivorans Nor1] gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus carboxydivorans Nor1] Length = 699 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 318/690 (46%), Positives = 468/690 (67%), Gaps = 9/690 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T +++ AGR L +ETG++A+Q++GAVL YG+T VL T + G DFFPLTV+Y Sbjct: 1 MQTFQMQLAGRALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE RP+E IL R+IDR IRPLF++ ++N+ V+ V+ D + Sbjct: 61 EERLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P + +M+ AS AL +S +PF GP+ G +V ++GQ+++NP +++ + S L+L V+GT+ Sbjct: 121 NPPDIPAMIGASCALSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSDLNLVVAGTK 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241 DAVLMVE AN++ E+ +LDAI FGH+ + ++ K+ K I + +++ Sbjct: 181 DAVLMVEAGANEVPEEAILDAITFGHDVIREIVAFQEKIVAEVGKPKREIPLYEVPPEID 240 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + + E L+ + P+K +R +QI +K + +F + N +I V + + + Sbjct: 241 AAVREYVTEKLKDAVTNPDKLMREEQIKQVKAEATEHFLVLYPD-NAKDIAYVMQKVLKE 299 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++ KVR DGR + +R IS +VGLL+RTHGS LF RG TQ + V TLG DEQ Sbjct: 300 IVRKMITIDKVRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQ 359 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + +M HYNF + GE P RREIGHG LA RA+ PV+P +FPY Sbjct: 360 ILDGLGVEESKRYMHHYNFPAFSVGETRPARGPGRREIGHGALAERALLPVIPPETEFPY 419 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+SM +VCGS+L+LMDAGVPI PV+G+AMGLVK+GD + IL+DI G Sbjct: 420 TIRLVSEVLESNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEGDHYTILTDIQG 479 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT G+TA+QMD+KI GI++ I+ AL+QA+RGRL IL++M +V+ E Sbjct: 480 IEDALGDMDFKVAGTAKGVTAIQMDIKISGITKEILADALEQARRGRLFILDKMLEVIKE 539 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + PR+ M I PD+IR+VIG GGK I+ I+++TG ++I+DDG V IA+ Sbjct: 540 PRPELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAA---V 596 Query: 602 EIEAAREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++EA ++ +R I ++ EV +Y G+V ++M+FGAFV ++GLVHISQL+ ERV Sbjct: 597 DVEAGKKAVRIIENLVRDVEVGGVYMGKVTRLMNFGAFVEILPGKEGLVHISQLARERVN 656 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVVK GD + VK+ + D +G+I LS K Sbjct: 657 KVEDVVKVGDEILVKVTEIDRQGRINLSRK 686 >gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus hydrogenoformans Z-2901] gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus hydrogenoformans Z-2901] Length = 731 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 325/700 (46%), Positives = 469/700 (67%), Gaps = 22/700 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 EI AGRPLKL G++A Q+ G+VL +YG+TVVL T + ++G DFFPLTV+Y+ER Sbjct: 11 EIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERF 70 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RP+E IL +R+IDR IRPLF K +KN+ ++ V+ + ++ P Sbjct: 71 YAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPE 130 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M ASAAL LS LPF GP+ V + + V+NP +++ + S L L V+GT+DAV+ Sbjct: 131 IAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAVM 190 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKLE 241 MVE A ++ E+++++AI GH E K ++ I + + AKE + + ++ ++L+ Sbjct: 191 MVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEEKAELK 250 Query: 242 E----EMSQMIKEDLRVSCFIPEKY---VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 E E ++KE + I EK+ R + +++LKK++ + F + E I + Sbjct: 251 EAVTAEAYPLLKE--AIEKIIAEKFNKQERDEYLENLKKELTTKFLETYPE-EELTIKGI 307 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + IQ ++VR +L + +R+DGR ++ VR I +VGLL RTHGS LF RG TQ + +VTL Sbjct: 308 LDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTL 367 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D Q +D L + FM HYNF P + GEV M P RREIGHG LA RA+ PV+P Sbjct: 368 GAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIP 427 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+RIVSE+ ES+GS+SM +VCGS+LALMDAGVPI PVAG+AMGL+K+GD+ Sbjct: 428 PEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVA 487 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT GITA+QMD+KI G++ +I+ AL QA+ GR+HIL + Sbjct: 488 ILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGK 547 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M +V+SE R +L + PR+ + P++IR++IG GGK+I+ I+++TG K++I+DDG + Sbjct: 548 MLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIF 607 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC------GARDGLVH 648 IA+ E A +I ++T EV K+Y G+V ++ DFGAFV ++GLVH Sbjct: 608 IAAVDKEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVH 667 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ISQL+ RV + DVVKEGD + VK + +D++G++KLS K Sbjct: 668 ISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRK 707 >gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase) [Candidatus Kuenenia stuttgartiensis] Length = 705 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 332/696 (47%), Positives = 454/696 (65%), Gaps = 4/696 (0%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE R L +ETGR+ARQ+DGAVL YGET+VL T V K DF PLTV+Y+E+ Sbjct: 6 VEKLIGNRALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREK 65 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GK PGG+ +RE RP++ EIL R+IDR IRPLF Y E QV+ V+ D E+ P Sbjct: 66 TYAAGKFPGGFFKREGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSADKENDP 125 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 +++MV ASAAL +S +PF P +V I ++++NP E Q S+D+ +SGT+DAV Sbjct: 126 DILAMVGASAALSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSSMDIVISGTEDAV 185 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEM 244 +MVE A ++ E+ ++DAI+FGH K +I +L + C KE IV S+ +L EE+ Sbjct: 186 MMVEASAKEIPEEQMVDAIMFGHAAIKEIITLQHELIEKCGKEKQIVAPSRMNKELMEEI 245 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKV 302 Q + P K R + +D++ +++ + E + EI ++FE ++ V Sbjct: 246 KQKYYTAIVEKNLTPGKGYRKEALDEILAAIINEYCVEGVEDAPTPKEIKAIFETVETIV 305 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ K +R D R + +R I+ +VG+L R HGS+LF RG+TQAIVVVTLGT DEQ Sbjct: 306 VREQIVSKGLRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQK 365 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 VD L FM+ YNF P GE + P RREIGHG LA RA+ VLP +FPYT Sbjct: 366 VDGLEDEYSKKFMLDYNFPPFCVGETKPLRGPGRREIGHGALAERALAEVLPPPNKFPYT 425 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 R+VS+ITES+GSSSMA+VCG +LALMDAGVPI PVAGIAMGLVK+ + ILSDI G Sbjct: 426 TRVVSDITESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEENSVCILSDILGT 485 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GI+E IM AL QA+ GRLHIL E+ KV+ + Sbjct: 486 EDHLGDMDFKVAGTAQGVTALQMDIKIAGITEKIMRDALAQAREGRLHILQELEKVIEKP 545 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ + P++ + I P++I +IG GGK I+ I E+TGAK+ I+DDGTV I+++ Sbjct: 546 REKISVYAPKIVQIKINPEKIGMIIGPGGKNIKKIQEETGAKIEIEDDGTVIISATLGES 605 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E A+ I ++T EV K YKG+V+ + ++GAFV DGLVHIS+LS E V K D Sbjct: 606 AEKAKTWIENMTKEVEVGKTYKGKVLSIKEYGAFVEIIPGHDGLVHISELSYEYVEKAGD 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 VV+ G + +K++ DD+ ++KLS K + + +P+ Sbjct: 666 VVEVGQEIMIKVIGIDDQKRVKLSRKAALKESEQPL 701 >gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio bacteriovorus HD100] gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio bacteriovorus HD100] Length = 697 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 328/696 (47%), Positives = 450/696 (64%), Gaps = 11/696 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TV G+ + +ETGR+A+Q+DGA L + G +VL T + + DFFPLTV Y E Sbjct: 4 TVTTSVGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASE-LDFFPLTVEYIE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGGY +RE++PT + +LI+R+IDR IRP+F + Y++ETQ++ V+ D Sbjct: 63 KFYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGAFP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 +++ + ASAAL S +PF GP Q+ ++GQ+V NP + ++ +D+ V+GT++ Sbjct: 123 LEILASLGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTRNG 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL---AKMCAKEPIVIDSKDFSKLE 241 +LMVE E +SE L A+ FGH P++ A +L A AK S D + + Sbjct: 183 LLMVEGETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSID-ADFK 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-----SEHSSWNEGEIVSVFE 296 + +++ + + I EK R ++ + E + E+ S+ E Sbjct: 242 AKAESLLRPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIADKELLKQRKKELNSIVE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + R+++LD+ VR+DGRD +TVR I+ +VG+L R HGS LF RG+TQ + VTLGT Sbjct: 302 DLKYQEARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGT 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ VDSL G Q+ FM+HYNF P + GEV RM SRREIGHG LA RAI VLP Sbjct: 362 ADDEQMVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPDF 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+RIVSE+ ES+GSSSM TVC +AL+DAGVP+ VAG+AMGL+K+GD +L Sbjct: 422 EKFPYTIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAG+ +GITA+QMD+KI +S +M AL QAK GR HILNEM Sbjct: 482 TDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEME 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 KV+ R Q+ EF PR+E + I PD+IR VIG GGKVIRGI E TG K+ I DDGT+ IA Sbjct: 542 KVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINIA 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ + A MI I EV K YKG++VK+ +FGAFV GL+HIS++S ER Sbjct: 602 SADPEATKKAIAMINDIIAEAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISNER 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V SDV+KEG+ + VK+L+ D G++KLS K + Q Sbjct: 662 VRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKALLQ 697 >gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sibiricum 255-15] gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sibiricum 255-15] Length = 739 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 319/690 (46%), Positives = 449/690 (65%), Gaps = 5/690 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E GRPL +E G++A+Q++GA L YGET VLATVV + KD DFFPLTVNY+ Sbjct: 6 QTFSTELGGRPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKD-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+L+RE RP EN IL SR+IDR IRPLF ++++ QV V+ D ++ Sbjct: 65 EKLYAAGKIPGGFLKREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDN 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 SP V +M+ AS AL +S +PF+GP+ G + +NG++++NP + + + +DL V+GT+ Sbjct: 125 SPEVAAMIGASIALSISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDIDLQVAGTKH 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 AV MVE A ++SE +L+AI+ GH+ K +I ++ +E F + L Sbjct: 185 AVNMVEAGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVAAVGQEKFAYTVASFDETLVN 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300 + ++ + + EK R I+++ K + ++++ S E+ V Sbjct: 245 RLKAEALAEVTTAVQVEEKQARDLAINEVISKYIDQYAADDSITEAQLAEVSGVLNKFVK 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR +R + +++GLL R HGS LF RG TQ + V TLG D Sbjct: 305 TEVRRLITEDKVRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDA 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L FM HYNF P + GE M AP RREIGHG L RA+ PVLP FP Sbjct: 365 QIIDGLGLKAEKRFMHHYNFPPFSVGEARPMRAPGRREIGHGALGERALLPVLPSETDFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSS A++CGS LA+MDAGVP+ PVAGIAMGL+K+G+++ IL+DI Sbjct: 425 YTIRLVSEVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKEGENYSILTDIQ 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGT G+TA+QMDMKIGGI+ I+ AL+QA+ GRLHIL M+ V++ Sbjct: 485 GMEDHLGDMDFKVAGTKDGVTALQMDMKIGGITRQILEEALEQARLGRLHILEHMNSVIA 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R++L ++ P++ + I PD+IR+VIG GGKVI GI+++TG K++ID DGTV IAS+ Sbjct: 545 EPRVELSKYAPKIVTLKINPDKIRDVIGPGGKVINGIIDETGVKIDIDQDGTVFIASTDQ 604 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I AR++I I + + + G V +V FGAFV +D LVHIS+L+ ERV +T Sbjct: 605 DGINHARQLIEDIVREVVIGEEFDGTVRRVEKFGAFVELFKGKDALVHISELALERVGQT 664 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + V++ + DD+G++ S KV+ Sbjct: 665 EDVVKLGDKLKVRVTEVDDKGRVNASHKVL 694 >gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 721 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 321/692 (46%), Positives = 460/692 (66%), Gaps = 20/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + LETG++A+Q+ G+V G+++VL T V K+G DFFPLTV+YQE+ +A G+ Sbjct: 12 GKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI V+ D E+ V+++ Sbjct: 72 VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELE 191 ASAAL +S +PF GP+ G +V + GQ V NP L + + LD+ ++ ++DA++MVE Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAIVMVEGG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC------AKEPIVIDSKDFSKLEEEMS 245 A ++SE V+++A++FG +P+++A L A EP K+ +L ++ Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRAFEP----PKNDVELRAKVK 247 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFE 296 + E ++ + EK+ R ++ ++KK+++ E + + E EI +E Sbjct: 248 ALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGYYE 307 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ +R ++ D++ R+ GR +R I+ +VGLL R HGSSLF RG+TQA+V TLGT Sbjct: 308 DVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGT 367 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 EDEQ V+ L+G FM+HYNF P + GEV + +P RREIGHG LA RA+ V+P Sbjct: 368 AEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPE 427 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R+VS+I ES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+K+G+ IL Sbjct: 428 DQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAIL 487 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+ AL QA GR HIL EM+ Sbjct: 488 SDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMA 547 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K LS R + + PR+ + I P++I+++IG GGK I+ I +TG +NI+DDG+V IA Sbjct: 548 KALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIA 607 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S + ++E A +MIR +T EV +IY G V K+ +FGAFV DGL+HIS+LS +R Sbjct: 608 SPNQDKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSDKR 667 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V SDV+ EG+ V VK++ D GKI+LS K Sbjct: 668 VKSVSDVLSEGEEVMVKVISVDRSGKIRLSRK 699 >gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K] gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K] Length = 721 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 321/688 (46%), Positives = 460/688 (66%), Gaps = 12/688 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + LETG++A+Q+ G+V G+++VL T V K+G DFFPLTV+YQE+ +A G+ Sbjct: 12 GKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI V+ D E+ V+++ Sbjct: 72 VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELE 191 ASAAL +S +PF GP+ G +V + GQ V NP L + + LD+ ++ ++DA++MVE Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAIVMVEGG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDS-KDFSKLEEEMSQMIK 249 A ++SE V+++A++FG +P+++A L A K D K+ +L ++ + Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRSFDPPKNDVELRAKVKALTW 251 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQA 300 E ++ + EK+ R ++ ++KK+++ E + + E EI +ED++ Sbjct: 252 EKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGYYEDVKY 311 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++ D++ R+ GR +R I+ +VGLL R HGSSLF RG+TQA+V TLGT EDE Sbjct: 312 DYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDE 371 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q V+ L+G FM+HYNF P + GEV + +P RREIGHG LA RA+ V+P QFP Sbjct: 372 QRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFP 431 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VS+I ES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+K+G+ ILSDI Sbjct: 432 YTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDIL 491 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+ AL QA GR HIL EM+K LS Sbjct: 492 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKALS 551 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R + + PR+ + I P++I+++IG GGK I+ I +TG +NI+DDG+V IAS + Sbjct: 552 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPNQ 611 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++E A +MIR +T EV +IY G V K+ +FGAFV DGL+HIS+LS +RV Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKSV 671 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDV+ EG+ V VK++ D GKI+LS K Sbjct: 672 SDVLSEGEEVMVKVISVDRSGKIRLSRK 699 >gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR] gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR] Length = 735 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 319/700 (45%), Positives = 467/700 (66%), Gaps = 31/700 (4%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR + +ETGR+A+Q+ GAV YG+T VL T ++G DFFPLTV+Y+ER YAVG Sbjct: 33 GGREMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLYAVG 92 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+E IL SR+IDR IRPLF K Y+N+ ++ V+ D +++P V ++ Sbjct: 93 KIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPDVTAI 152 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 ASAALM+SG+PF GP+ V ++G++++NP + + + S + L V+GT+DAV+MVE Sbjct: 153 NGASAALMISGIPFLGPIGAVVVGRVDGKFIINPTIAQAEVSDMHLTVAGTKDAVIMVEA 212 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--------KEPIVIDSKDFSKLEE 242 A ++ E+V+L+AI +GH E K ++ + + C +EP++ L+E Sbjct: 213 GAKEVPEEVILEAISYGHEEIKKIVSFLEDFTRECLDAGVAKPRQEPVLF------LLDE 266 Query: 243 EMSQMIKE-------DLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEGEI 291 E+ + ++E D C EK KQ I++ K+++ +YF+ + +E + Sbjct: 267 EIEKQVREYAYDKMFDTLKECI--EKRFPKKQREDFIENAKEEIKTYFAEKVFPEDEAAL 324 Query: 292 VSVFE---DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 V + ++ +++R ++ ++R+DGR + VR I VG+L RTHGS LF RG TQ Sbjct: 325 KHVADAVNKLEKEIMRKFIIQDRIRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQV 384 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TLG DEQ +D L + +M HYNF P + GE M P RREIGHG LA RA Sbjct: 385 LTVTTLGAVGDEQILDGLGVEESKRYMHHYNFPPYSVGEARFMRGPGRREIGHGALAERA 444 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + P++P +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LMDAGVPI +PV+G+AMGL+K Sbjct: 445 LEPMIPSEDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMDAGVPIKRPVSGVAMGLIK 504 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + D F +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GIS+ I+ +AL QA+ GR Sbjct: 505 EEDAFAVLTDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGISKEILQVALTQAREGR 564 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL++M +V+ + R ++ + PR+ I P++IRNVIG GGK I+ I+++TG K++I+ Sbjct: 565 MHILSKMLEVIDKPRPEISPYAPRIITFTIDPEKIRNVIGPGGKTIKKIIDETGVKIDIE 624 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDG V IA+ + ARE+I +T EV K+Y G+VVK+MDFGAFV ++GLVH Sbjct: 625 DDGRVFIAAVDVEAGRRAREIIDKLTADVEVGKMYLGRVVKIMDFGAFVEVLPGKEGLVH 684 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ISQL+ +RV K DVV GD + VK+ D++G+I LS K Sbjct: 685 ISQLAEQRVGKVEDVVSVGDEIMVKVTKIDEQGRINLSRK 724 >gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus fermentans DSM 20731] gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus fermentans DSM 20731] Length = 690 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 316/689 (45%), Positives = 472/689 (68%), Gaps = 7/689 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H+ ++ GR L +ETG+IA+Q++GAVL YGET V+ + ++G DFFPLTV++ Sbjct: 1 MHSFSTDFGGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDF 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+LRRE RP E IL SR+IDR IRP+F Y N+ Q++ + D + Sbjct: 61 EEKMYAVGKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P + +M+ AS AL +S +PFEGP+ G +V I+GQ+++ P +++ + S L+L V+GT+ Sbjct: 121 NAPDIPAMIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAVAGTK 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 DA+LMVE A ++SE+V+LDAI F H E K ++E K+ K + D + ++ EE Sbjct: 181 DAILMVEAGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKM--DFEVYTPPEE 238 Query: 243 ---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 E+ + + + P+K R K + + K++++++F+ + NE +I V + Sbjct: 239 LAKEIEAYGEPKIHDALMDPDKLHRDKMVSEAKEEILAHFTELYPD-NEIDIAHVVAKLV 297 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +V R ++ K+R DGR + VR IS +VGLL R HG SLF RG TQ + + L + Sbjct: 298 KRVFRHIITVDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLRE 357 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +++L+G + ++ HYNF P + GE + +P RREIGHG LA RA+ PV+P +F Sbjct: 358 AQNLETLAGDIQKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEF 417 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI PV+G+AMGLVK+G++F IL+DI Sbjct: 418 PYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGENFTILTDI 477 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED G MDFKVAGT GITA+QMD+K+ G++++I+ AL QAK+GR IL +M + + Sbjct: 478 QGLEDANGDMDFKVAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLECI 537 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 +E R QL ++ P++ + + P++I+++IG GGK+I+ IVE TGA+++I+DDGTV IA++ Sbjct: 538 AEPRKQLKKYAPKITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQIDINDDGTVYIAAAD 597 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +AA + I+ IT PEV KIY G+V ++M+FGAFV F R+GLVHISQL+ ERV K Sbjct: 598 SESADAAIKTIQDITAEPEVGKIYTGKVTRIMNFGAFVEFMPGREGLVHISQLAKERVEK 657 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD + VKL++ D +G++ LS K Sbjct: 658 VEDVVNVGDEIVVKLVEIDSKGRLNLSRK 686 >gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum DSM 5159] gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 790 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 329/703 (46%), Positives = 470/703 (66%), Gaps = 19/703 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H IE AGR L +ETGR+A Q+DGAVL YGETVVL TVV + +G DFFPLTV Y Sbjct: 5 IHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+ RRE +P+E IL +R+ DR IRPLF K Y+NE QVI V+ D E Sbjct: 65 EEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQE 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182 + P V+S++ ASAAL LS +P+ GPV ++ ++G+ V+NP + + +D+ V+GT Sbjct: 125 NEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTA 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241 DA+LMVE +AN++SED ++A++ H E K ++ +L + K + ++ +L+ Sbjct: 185 DAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELK 244 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEGEIV 292 ++++ + + LR + F P+K +R + L+++++++F + + E+ Sbjct: 245 QQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTAKEVG 304 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 +F+ + ++VR +L++ R DGR + +R+I QVGLL R HGS+LF RG TQ + V Sbjct: 305 DLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVC 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+E+EQ++DSL + +M HYNF P +TGE+ R+ PSRR+IGHG LA RA+ V Sbjct: 365 TLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPYT+R+VSE+ S+GS+SMA+VCGSSLALMDAGVPI KPVAG+AMGLV D Sbjct: 425 LPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTT 484 Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + IL+DI G ED LG MDFKVAGT GITA+QMD+K+ GI+ IM AL+QA+RGRL Sbjct: 485 GRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARRGRLF 544 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL++MS+V+ R ++ + PR+ + I P+QI VIG GG+VIR I EQTG K++I++D Sbjct: 545 ILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKISIEED 604 Query: 591 GTVKIASSSLAEIEAAREMIRSI---TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 GTV I S A +AAR +R I T VPEV +I+ G+VV ++ GAFV +DG + Sbjct: 605 GTVFI---SAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGFL 661 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 HIS+++ ERV DV+K G + V ++ GKI LS K + Sbjct: 662 HISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKAL 704 >gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] Length = 802 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 334/703 (47%), Positives = 468/703 (66%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+DGAV+ YG T VL+TVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVG+IPGG+ +RE +P++ E LISR++DRSIRPLF + +E ++ N++ + Sbjct: 60 VQFLAKSYAVGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPAGFCDEVVIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177 D S P V+++ A+AAL +SG+PF P+ GA++ YI G+Y+LNP +E + LD+F Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFSTPIAGAKIGYIREEGRYILNPSAEELARSELDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236 SGT+ +V+MVE EA++LSED +L A+ FGH C V++ I + A+ + + D Sbjct: 180 YSGTKSSVVMVESEASELSEDEMLGALTFGHENCTQVLDLIEEFAEAAGPKDVAEFIPHD 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIV 292 K+ + V+ K R Q+D ++ + S +H S + E E++ Sbjct: 240 IGKVVSGIGGDHSTRFSVAYGDNNKKTRVLQLDAARESLYSDLCEKHVSDGGEYTEQEVL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +VR+ +LD R+DGR + +R+I +V L+ R+HGS+LF RGDTQA+V+ Sbjct: 300 LAIKTFERSLVRSRVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT +DEQ VD G +R F++HYNF A GE + + P RREIGHG+LA RAIHPV Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+K+GD Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDEDHLG MDFKVAGT GITA+QMDMKI GI +I+ +LQQA+ GRL I+ Sbjct: 480 YAVLSDIIGDEDHLGDMDFKVAGTKEGITALQMDMKIRGIGFDIIEKSLQQARDGRLFII 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M KV+ ESR + + PR+E M I ++I+NVIG GGK +R I E+TG K+ I DGT Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + S +E A+ MI I PEV K++ G + ++ +GAFV F G R GLVHIS++ Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E + SDV+ D V V ++ D+ ++LSM+ VDQ++G Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701 >gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 700 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 312/687 (45%), Positives = 465/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++TG++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ Q+I ++ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++GQ+V+NP D+ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +L+AI++ H K ++E I ++ K K +++ D +LE Sbjct: 184 AIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVKEVGVPKSEVILHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ + + + PEK R +D ++++++ YF E+ N +I V +I + Sbjct: 243 EKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++K+R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + PRV M + P++IR++IG GK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASDLK 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D +G+I LS K Sbjct: 662 DVVKVGDDILVKVTDIDKQGRISLSRK 688 >gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] Length = 706 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 313/685 (45%), Positives = 463/685 (67%), Gaps = 4/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGR L +E G++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ER Y Sbjct: 10 IDWAGRKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKP-LDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D + S + Sbjct: 69 AVGKIPGGFIKREGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M +S AL +S +PFEGP+ G QV I+G++++NP +D+ ++ ++L V+GT+DA+ M Sbjct: 129 AAMFGSSLALTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEINLIVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A+++ E+ +L+AI+FGH E K +I ++A KE + ++ + +E E+ Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLISFQEEIAAQVGKEKMEVELYQIDQDIEAEVRG 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305 + +ED+ + + EK+ R I ++K +++ F + + + ++ V + + VR Sbjct: 249 ICEEDMIKAIQVQEKHAREAAIKEVKDDVIAKFEEKEADEAQLKQVKQVLDKLVKGEVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++K+R DGR + +R +++QVGLL RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 309 LITEEKLRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDG 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE + P RREIGHG L RA+ P++P FPYT+RI Sbjct: 369 LGLEESKRFMHHYNFPLFSVGETGPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRI 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL++ G+ + IL+DI G EDH Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIQSGEHYSILTDIQGMEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HIL+ M +SESR + Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKSGRMHILDSMLSTISESRSK 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ M I PD+IR+VIG GK I I+E+TG K++I+ DG+V I+S+ + Sbjct: 549 LSQYAPKILTMHINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGSVFISSTDEEMNKK 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ER+ K DVV Sbjct: 609 AKKIIEDIVREVEVGQLYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERIGKVEDVVS 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D +G++ LS K V Sbjct: 669 IGDELLVKVTEIDRQGRVNLSRKAV 693 >gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii F0254] gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii F0254] Length = 699 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 319/709 (44%), Positives = 466/709 (65%), Gaps = 28/709 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + +K+ TG+IARQ+ G+V+ G T++L T + +++GQDFFPLT Sbjct: 1 MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+++RE++P +E+LISR+IDR IRPLF + + N +++ V+ + Sbjct: 61 VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D + P ++ + SAAL LS +PF G V G V YING+Y+LNP ++ + + L V+ Sbjct: 121 DEVNYPENLATIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A ++SE+V+L+AI+FGH K+ ++CA++ ++ D K Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGH----------EKIKEICAEQDKFLEQFDVQK 230 Query: 240 LE---EEMSQMIKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285 E +E+ IKE ++ + P K + + ID+L+ +K V +E Sbjct: 231 YEFEKKEVDSEIKEFIDSFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVEKLENEDKE 290 Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + D++ ++VR +L K+ R DGR + +R I ++ L HGS+LF Sbjct: 291 IDENLEKEFKKYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFT 350 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQA+VV TLG++EDEQ +D + R F +HYNF P + GE M AP RRE+GHG Sbjct: 351 RGETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHG 410 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P+T +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI VAGI Sbjct: 411 NLAERALKYVMPETDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G+ F +L+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+ IM +AL+ Sbjct: 471 AMGLIKEGETFTVLTDIQGLEDHLGDMDFKVAGTRDGITAIQMDIKIEGITREIMEIALR 530 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA GRL I+++M V+SE R Q+ E P++EI+ I PD+I +IG GGKVIR I+++TG Sbjct: 531 QALEGRLFIIDKMEAVISEPRAQVAENAPKIEIIKINPDKIAGLIGPGGKVIRAIIDETG 590 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGTV I ++ A E+++ T E+N+IY+G+V K+M FGAFV Sbjct: 591 VSIDIEDDGTVSIFGKESENMKKALELVKRQTQSVELNEIYEGKVTKLMKFGAFVEVLPG 650 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 ++GL+HIS++S +RV KT DV+KEG V VK++ + K LSMK ++ Sbjct: 651 KEGLLHISEISNKRVEKTEDVLKEGQNVRVKVISMESEDKFNLSMKTLN 699 >gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13] Length = 715 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/690 (45%), Positives = 466/690 (67%), Gaps = 10/690 (1%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D I+WAGR L +E G++A+Q++GAV+ YG+T VL+T + K DFFPLTVN Sbjct: 14 DKQVFSIDWAGRNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPKK-LDFFPLTVN 72 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+ER YAVGKIPGG+++RE RP+E +L SR+IDR IRPLF+ ++NE QVI VM D Sbjct: 73 YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 132 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 S + +M +S AL +S +PF+GP+ G V IN ++V+NP +D+ ++ ++L V+GT Sbjct: 133 NCSSEMAAMFGSSLALSVSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDINLVVAGT 192 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240 +DA+ MVE A+++ E+V+L+AI+FGHNE K +I ++ + KE + + K L Sbjct: 193 KDAINMVEAGADEVPEEVMLEAIMFGHNEIKRLIAFQEEIVQAVGKEKTEVTLYEVDKNL 252 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 E E+ + +E + + + EK+ R I ++K ++++ + + + E +++ +I + Sbjct: 253 EHEIRALAEEKMTKAVQVFEKHAREAAIKEVKAEVLARYEEQEA---EADVLKQVNEILS 309 Query: 301 KVV----RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +V R ++ + KVR DGR S+ +R ++++VGLL RTHGS LF RG TQA+ + TLG Sbjct: 310 MLVKEEVRRLITEDKVRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGA 369 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P Sbjct: 370 LGDVQILDGLGIEEEKRFMHHYNFPLFSVGETGPMRGPGRREIGHGALGERALDPVIPSE 429 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+K G+ + +L Sbjct: 430 KDFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKKGEHYTVL 489 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G EDHLG MDFKVAGT G+TA+QMD+KI G+S +I+ ALQQAK GR+HIL+ M Sbjct: 490 SDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSRDILEEALQQAKIGRMHILDSML 549 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ESR +L + P++ +M+I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+ Sbjct: 550 ATIDESRKELSPYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFIS 609 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S ++ + A+++I I +V +IY G+V ++ FGAFV +DGLVHIS+L+ ER Sbjct: 610 SINMEMNDKAKKIIEDIVREVQVGEIYMGKVKRIEKFGAFVELFSGKDGLVHISELAEER 669 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 V + D+VK G+ V VK+++ D +G++ LS Sbjct: 670 VKQVEDIVKLGEEVLVKVMEIDKQGRVNLS 699 >gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 46P47B1] Length = 665 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 332/670 (49%), Positives = 454/670 (67%), Gaps = 14/670 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E ++ + + LETGRIARQ++ ++ G +V++A VV ++ GQ+FFPLT Sbjct: 1 MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV V+ Sbjct: 60 VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +M+ ASAAL +S PF GP+ A+V +ING+YVLNP L E Q LDL V+ Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234 GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ A+ K+ V I+ Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291 + ++L+E+ + + E ++ K R ++D+L + + E S + +I Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +FE ++ + VR +L K R+DGRD ETVR + QVG+L THGS+LF RG+TQA+VV Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D VD+L+GT+++ FM+HYNF + GE R GAP RREIGHGRLARR + Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM AL+QA GR+HI Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M++V++ SR ++ P + I P++IR+VIG GG IR + E TGA ++IDD+G Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 T++I + A AA I +IT EV +Y+G V +++DFGAFV DGLVHISQ Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655 Query: 652 LSTERVAKTS 661 +S ERV S Sbjct: 656 ISDERVENVS 665 >gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 699 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 334/703 (47%), Positives = 456/703 (64%), Gaps = 25/703 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGRPL LETGR+A+Q++ +VL YG+TVVL TV KD DFFPLTVNY+ER Y Sbjct: 1 MDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNYEERLY 59 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF + ++NE QV+ VM D E SP + Sbjct: 60 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M SAAL +S +PF GP+ G V I+G++V+NP ++ S + L V+GT+DA++M Sbjct: 120 AAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTKDAIMM 179 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE A ++ E+V+L+AI+FGH + K K+ A + ++ K+E ++ Q+ Sbjct: 180 VEAGAAEVPEEVMLEAIMFGHEQIK----------KIVAVQEQFVEEAGVPKMEVQLHQV 229 Query: 248 IKE-DLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSV 294 +E + +V F +PEK+ R + ID + + +F+S E ++ V Sbjct: 230 DEEINAKVREFASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEV 289 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 DI + VR ++ +KVR DGR + +R I + LL RTHGS LF RG TQA+ V TL Sbjct: 290 LHDIVKEEVRRLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTL 349 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D Q +D L + FM HYNF P + GE + AP RREIGHG L RAI V+P Sbjct: 350 GALGDVQILDGLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIP 409 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI PVAGIAMGL+KDG F Sbjct: 410 SEEEFPYTIRLVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFS 469 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDHLG MDFKVAGT G+TA+QMD+KI GI +I+ AL QAK GR+ IL + Sbjct: 470 ILTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEK 529 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M +S+ + +L + P++ M+I PD+IR+VIG GGK+I I+E+TG K++I+ DG V Sbjct: 530 MLSRISDPKKELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 589 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IASS+ + A+E+I I V + Y G V ++ FGAFV ++GLVHISQLS Sbjct: 590 IASSNEQMNQKAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSI 649 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERVAK DVV GD + VK+ + D++G+I LS K N KP Sbjct: 650 ERVAKVEDVVSIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 692 >gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1] gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1] Length = 704 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 318/691 (46%), Positives = 464/691 (67%), Gaps = 4/691 (0%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D HT I+WAGRPL +E G++A+Q++GA L YGET VL+T + K+ DFFPLTVN Sbjct: 4 DKHTYTIDWAGRPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKN-VDFFPLTVN 62 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D Sbjct: 63 YEERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 + +P + +M+ +S AL +S +PFEGP+ G V ++G++++NP +++ ++ + L V+GT Sbjct: 123 DCTPEMAAMLGSSLALSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDIHLTVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240 +DA+ MVE A ++ E+V+L+AI+FGH E K +I K+ KE + ++ + +L Sbjct: 183 KDAINMVEAGAKEVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEIGKEKMAVELFELDEEL 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299 E++S M ++ + + + EK R + I + ++++ F +E + ++ + DI+ Sbjct: 243 VEKVSGMCRKKMIEAIQVHEKKAREEAIRKVGDEVLAQFEAEEADEETVKQVKQILHDIE 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 + VR ++ K+R DGR + +R +S++VG+L RTHGS LF RG TQA+ + TLG D Sbjct: 303 KEEVRKLITVDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P +F Sbjct: 363 VQILDGLGIEESKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GS+S A++C S+LA+MDAG+PI PVAGIAMGLVK G+ + IL+DI Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLVKSGEHYTILTDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQA++GR+ IL+ M + Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMSTI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S++R L + P++ M I PD+IR+VIG GK I I+++TG K++I+ DGT+ I+S+ Sbjct: 543 SKTRDHLSVYAPKILTMTIHPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTIFISSTD 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A+++I I EV K+Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 603 EEANNKAKKLIEDIVREVEVGKVYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVRK 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ D D G+I LS K V Sbjct: 663 VEDVVKIGDEILVKVTDIDSHGRINLSRKAV 693 >gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus RF122] gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus RF122] Length = 698 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERIKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis C-1013-b] gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis C-1013-b] Length = 700 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 318/710 (44%), Positives = 465/710 (65%), Gaps = 28/710 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + +K+ TG+IARQ+ G+V+ G T++L T + +++GQDFFPLT Sbjct: 1 MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+++RE++P +E+LISR+IDR IRPLF + + N +++ V+ + Sbjct: 61 VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D + P ++++ SAAL LS +PF G V G V YING+Y+LNP ++ + + L V+ Sbjct: 121 DEVNYPENLAIIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A ++SE+V+L+AI+FGH K+ ++CA++ ++ D K Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGH----------EKIKEICAEQDKFLEQFDVQK 230 Query: 240 LEEEMSQM---IKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285 E E ++ IKE ++ + P K + + ID+L+ +K V +E Sbjct: 231 YEFEKKEVDPEIKEFIDGFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVQKLENEDKE 290 Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + D++ ++VR +L K+ R DGR + +R I ++ L HGS+LF Sbjct: 291 IDENLEKEFKKYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFT 350 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQA+VV TLG++EDEQ +D + R F +HYNF P + GE M AP RRE+GHG Sbjct: 351 RGETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHG 410 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P+ +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI VAGI Sbjct: 411 NLAERALKYVMPEQDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+GD F +L+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+ IM +AL+ Sbjct: 471 AMGLIKEGDTFTVLTDIQGLEDHLGDMDFKVAGTKDGITAIQMDIKIEGITREIMEIALR 530 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA GRL I+++M V+SE R ++ E P++EI+ I PD+I +IG GGKVIR I+++TG Sbjct: 531 QALEGRLFIIDKMEAVISEPRAEVSENAPKIEILKISPDKIAGLIGPGGKVIRAIIDETG 590 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGTV I ++ A E+++ T E+N IY+G+V K+M FGAFV Sbjct: 591 VSIDIEDDGTVSIFGKESENMKKALELVKRQTQSVELNTIYEGKVTKLMKFGAFVEVLPG 650 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ++GL+HIS++S +RV KT D +KEG V VK++ ++ K LSMK + Q Sbjct: 651 KEGLLHISEISNKRVEKTEDALKEGQNVRVKVISMENEDKFNLSMKALKQ 700 >gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS00] Length = 698 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus N315] gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus COL] gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH9] gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH1] gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu3] gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus 132] gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MR1] gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus N315] gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu3] gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ST398] gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O11] gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O46] gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 698 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 738 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 335/710 (47%), Positives = 463/710 (65%), Gaps = 28/710 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ GR L LETGR+A+Q+ GAVL TYG+T+VL T ++ +D DFFPLTV+Y+ER Sbjct: 10 EMSLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRD-IDFFPLTVDYEERL 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RP+E IL R+IDR IRPLF K +NE QV+ V+ D +++P Sbjct: 69 YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPE 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ASAAL +S +P + P+ G V ++GQ+V+NP + + + S + L V+GT DAV+ Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDMHLVVAGTDDAVM 188 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI-----SKLAKMCAKEPIVIDSKDFSKLE 241 MVE A ++ ED +L+AI+FGH K V++ I + L A+E +VI ++ Sbjct: 189 MVEAGAKEVPEDQILEAIMFGHEVVKEVVKFIDDFRVAALELGLAQEKMVIPEPEYDPAI 248 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----------EHSSWNEGEI 291 E+ E++ I E + C + KK +Y E NE +I Sbjct: 249 VEVVLPKAEEV-----IREAVLYCSREKLTKKDREAYMEEVMTNLQTSFLEQFPENEKDI 303 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + E + KVVR ++ K+R+DGR + VR IS +VG+L RTHGS LF RG TQ + V Sbjct: 304 KDLIEKAEKKVVRRIITHDKLRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTV 363 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG DEQ +D L + +M HYNF P +TGE M +P RREIGHG LA RA+ P Sbjct: 364 ATLGCVSDEQILDGLGLEETKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALEP 423 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 ++P FPYTLR+VSE ES+GS+SM +VCGS+LALMDAGVPI PVAG+AMGL+ + D Sbjct: 424 MIPPEEVFPYTLRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIMEED 483 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+ + AL QA RGR+HI Sbjct: 484 QFTVLTDIQGLEDHLGDMDFKVAGTANGITALQMDIKIPGITREVFEQALAQAYRGRMHI 543 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M +V+ R ++ + P + I PD+IR+VIG GGK+I+ +VE+TGA ++I+DDG Sbjct: 544 LSKMLEVIPAPRPEISPYAPSIIRTTIHPDKIRDVIGPGGKIIKKLVEETGADIDIEDDG 603 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDG 645 V IA+ + + A E+I+SIT EV K+YKG+V +V DFG FV ++G Sbjct: 604 RVFIAAVDREKGKRALEIIQSITSEVEVGKLYKGKVTRVTDFGCFVEVIPGVLGLPGKEG 663 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 LVHISQL +RV KT DVVKEGD + VK + +D +G++KLS K ++ G Sbjct: 664 LVHISQLDFQRVEKTEDVVKEGDVITVKAIGYDHQGRLKLSRKEALRDMG 713 >gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 698 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERIKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 698 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 314/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DA+ MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis F0399] gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis F0399] Length = 690 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/691 (45%), Positives = 460/691 (66%), Gaps = 7/691 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + EIE GR + +E G++A+Q++GA L YG+TVVL T + ++G DFFPLTV+Y Sbjct: 1 MQSFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++ V+ D + Sbjct: 61 EEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P + +M+ AS AL +S +PF GP+ G +V YING +V+NP+ +E S L+L V+G+ Sbjct: 121 NPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYINGAFVINPKEEERAVSELNLTVAGSY 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSK 239 DAV+MVE AN+LSE++VLDAI+FGH E + ++E + C KE P + + + Sbjct: 181 DAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAVSE--E 238 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 LEE++ +E L + +K R I +K + + +F E+ + EI + I+ Sbjct: 239 LEEKIRAYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQAK-EISQILYKIE 297 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VR ++ +K+R DGR VR +S +VG+L RTHGS LF RG TQ + V TLG+ D Sbjct: 298 KGIVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGD 357 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +D L ++ HYNF + GE M +P RREIGHG LA RA+ P++P F Sbjct: 358 EQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDF 417 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL+DI Sbjct: 418 PYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTDI 477 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKVAGT GITA+QMD+KI GI+ +I+ AL QAK GR IL +M + + Sbjct: 478 QGMEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLECI 537 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + +L + PRVE + I D+IR+VIG GGKV+R I+++TG ++I +DG + I S + Sbjct: 538 DKPAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIFITSPN 597 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ AR+MI I EV +IY G+V + + FGAFV ++GL HISQL+ RV Sbjct: 598 TEAMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVES 657 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVV GD + VK+++ D++G+I +S KV+ Sbjct: 658 VEDVVHIGDELQVKVIEIDEKGRINVSHKVL 688 >gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC 14580] gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580] gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] Length = 705 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/689 (45%), Positives = 460/689 (66%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL+T + K DFFPLTVNY+ Sbjct: 6 HVFSIDWAGRKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKT-VDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V ++ ++++NP L++ ++ + L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDIHLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A+++ E+++L+AI+FGH E K +I ++ KE I + S L+E Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEIDSDLKE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAK 301 ++ M + +L + + EK+ R I ++K ++++ F E ++ + + Sbjct: 245 KVRGMAESNLLKAIQVHEKHAREDAISEVKNEVLAKFEEEEHDEETLKQVKDILSQLVKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ + TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE M P RREIGHG L RA+ P++P FPY Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPIVPSEKDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK GD++ +L+DI G Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNYTVLTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK+GR+ IL M L+E Sbjct: 485 MEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILESMLSTLAE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 SR +L + P++ M+I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ + Sbjct: 545 SRKELSPYAPKILTMSINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 MNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MW2] gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 698 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPVERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GDT+ VK+ + D +G++ S + +++ Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698 >gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum thermopropionicum SI] gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum thermopropionicum SI] Length = 734 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 332/708 (46%), Positives = 466/708 (65%), Gaps = 33/708 (4%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T EI GRP+ LETGR+A Q+ GAV YG+T VL T +++ G DFFPLTV+Y+E Sbjct: 8 TREIIVGGRPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDYEE 67 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+++RESRP+E IL R+IDR IRPLF K +NE QVI ++ D +++ Sbjct: 68 RFYAVGKIPGGFIKRESRPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNA 127 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +MV ASAAL +S +P + P+ G V ++G++V+NP L + + S + L V+GT+DA Sbjct: 128 PEIAAMVGASAALHISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSDMHLVVAGTKDA 187 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKEPIVIDSKD--- 236 V+MVE A ++ E+V+L+AI FGH K ++ I + L AKE +VI+ + Sbjct: 188 VMMVEAGAKEVPEEVILEAISFGHETVKEIVAFIERYREEALEMGLAKEKMVIEVAEPDP 247 Query: 237 ----------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 KL+ + + + E L K R ++++K +++ F +++ Sbjct: 248 VLVEAVTGPATEKLDGVLRRCVNERL-------SKQERDSLLNNIKDELMQKFLADYPE- 299 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E I + + I+ K+VR ++ ++ +R+DGR VR IS +VG+L R HGS LF RG T Sbjct: 300 QESLIKDLLDSIEKKLVRRMITEEGLRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQT 359 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + VVTLGT +EQ +D L + FM HYNF P +TGE + +P RREIGHG LA Sbjct: 360 QILSVVTLGTVSEEQILDGLGVEESKRFMHHYNFPPYSTGETRPLRSPGRREIGHGALAE 419 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+RIVSE ES+GS+SM +VCGS+LALMDAGVPIS PVAG+AMGL Sbjct: 420 RALAAVIPGEEEFPYTIRIVSEALESNGSTSMGSVCGSTLALMDAGVPISAPVAGVAMGL 479 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+GD+F +L+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+ + AL QA Sbjct: 480 IKEGDNFTVLTDIQGFEDHLGDMDFKVAGTAKGITALQMDIKIPGITREVFEKALAQAYE 539 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR+HILN+M +VL R +L PR+ + I PD+IR+VIG GGKVI+ IVE+TGA+++ Sbjct: 540 GRMHILNKMLEVLPAPRPELSPHAPRIIHITIDPDKIRDVIGPGGKVIKKIVEETGAEID 599 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----- 641 I+DDG V IA+ + A+E+I ++T + +IY G+V ++ DFG FV Sbjct: 600 IEDDGRVFIAAVDQEKGRKAQEIIETLTKEVQTGEIYTGRVTRITDFGCFVEIIPGVLGM 659 Query: 642 -ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++GLVHISQL+ RV + DVVKEGD + VK+ +D +G++KLS K Sbjct: 660 QGKEGLVHISQLAHHRVNRVEDVVKEGDVILVKVTGYDSQGRLKLSKK 707 >gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] Length = 698 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/687 (45%), Positives = 462/687 (67%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP L++ +Q LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH+E K ++E ++ K + +D + + + Sbjct: 190 EAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEALVSRVQAL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R +D+LK ++ + F E NE E+ ++ D+ + V Sbjct: 250 TEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L R HGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L Q FM HYNF + GE + AP RREIGHG L RA+ ++P T++FPYT+ Sbjct: 370 DGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + R Sbjct: 490 DALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+VEIM I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 AELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ++E+I +IT EV +IY +V ++ +GAFV +D L+HISQ+S +R+ K DV Sbjct: 610 NRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K GDT+ VK+ + D +G++ S KV+ Sbjct: 670 LKIGDTIKVKITEIDKQGRVNASHKVL 696 >gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] Length = 702 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 323/689 (46%), Positives = 462/689 (67%), Gaps = 11/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGRP +ETG++A+Q++GAVLA YG+TVVL T + ++G DF PLTV+Y+ER YA Sbjct: 7 EIAGRPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYA 66 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE +P+E IL +R+IDR +RPLF K ++N+ Q+I ++ D ++P VV Sbjct: 67 VGKIPGGFIKREGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPDVV 126 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 ++ AS AL +S +PFEGPV V ++G +++NP +++ ++ L L V+GT+DA+LMV Sbjct: 127 AINGASIALCISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSRLRLVVAGTKDAILMV 186 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV-IDSKDFSKLEEE 243 E A++++E+ +++AI+FGH E K ++ E I+K+ K + P++ ID + LE+ Sbjct: 187 EAGADEVTEEEMINAILFGHEEIKKIVKFQEEIIAKVGKPKMEVPVMEIDPE----LEKA 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + ++++ + I +K R + + + + +F + E EI V I + V Sbjct: 243 VREYARDEILKAIRIYDKQEREAYLQKINEDTLLHFQDIYPE-KEKEIAEVLYSILKEEV 301 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + +R DGR S +R IS +VG+L RTHGS LF RG TQ + V TLG D Q + Sbjct: 302 RNMITYEGIRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQIL 361 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF P +TGE + P RREIGHG LA RA+ P++P FPYT+ Sbjct: 362 DGLELEESKRFMHHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPEETFPYTI 421 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ S+GS+SMA+VCGS+LALMDAGVPI PVAGIAMGL+K D ILSDI G E Sbjct: 422 RLVSEVLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVTILSDIQGIE 481 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI GI I+ AL+QA+ GRL+IL +M +S R Sbjct: 482 DFLGDMDFKVAGTSKGITAIQMDIKIKGIDAEILKKALEQAREGRLYILEKMLATISSPR 541 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ I PD+IR VIG GGK+I I+ +TG K++I+DDG + IA+ + A Sbjct: 542 PELSPYAPRIFTTVIDPDKIREVIGPGGKMINKIIAETGVKIDIEDDGRIYIAAPNEAAG 601 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A +MI++IT EV K+Y G+V+++ +FGAFV ++GLVHIS+L+ RV K DV Sbjct: 602 EKALDMIKNITQDVEVGKVYLGKVLRITNFGAFVEILPGKEGLVHISKLAKGRVKKVEDV 661 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 VK GD + VK+ D D +G+I LS K V Q Sbjct: 662 VKIGDEILVKVTDIDKQGRINLSHKDVFQ 690 >gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 700 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/687 (45%), Positives = 462/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++TG++A+Q++GA YG+TVVL TV + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ QVI V+ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++GQ+++NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K +I I ++ K K +++ D +LE Sbjct: 184 AIVMVEAGAKEVPEETMLDAIMYAHEYIKQIIGFIEEIVKEVGVPKSEVILHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + EK R +D ++++++ +F E+ N +I V +I + Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++K+R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG L RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALGERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R QL + PRV M + P++IR +IG GGK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D G+I LS K Sbjct: 662 DVVKVGDNILVKVTDIDKLGRISLSRK 688 >gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] Length = 698 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 320/694 (46%), Positives = 465/694 (67%), Gaps = 17/694 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G YV+NP L++ + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246 E A++++E +L+AI FGH E K ++ ++ + +P+ K+F +E EE+ Q Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHI--QPV---KKEFIPVERDEELVQ 244 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298 +K + L+ + +K R + +D LK ++ + F E NE E+ ++ D+ Sbjct: 245 RVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILNDL 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG Sbjct: 305 VKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T + Sbjct: 365 DYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTE 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+D Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + Sbjct: 485 IQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L + P+VEIM I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 545 IDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I ARE+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S +R+ Sbjct: 605 DQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRIN 664 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 K DV+K GDT+ VK+ + D +G++ S KV+D+ Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698 >gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus 1942] gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus 1942] Length = 705 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/689 (45%), Positives = 459/689 (66%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAV+ YG+T VL++ + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QVI VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V ++ Q+++NP +D+ ++ + L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDIHLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A+++ E+ +L+AI+FGH E K +I ++ KE I + ++L + Sbjct: 185 AINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLYEIDAELSD 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301 ++ + +EDL + + EK+ R I+++K +V+ F E H ++ + Sbjct: 245 KVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEEEEHDDDIIKQVKQTLSKLVKN 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ ++KVR DGR + +R +S++VG+L RTHGS LF RG TQA+ + TLG D Q Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQ 364 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPY Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI G Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK+GR+ IL+ M L E Sbjct: 485 MEDALGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLNTLGE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 +R +L ++ P++ MAI PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ + Sbjct: 545 ARKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 605 NNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] Length = 698 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 320/694 (46%), Positives = 465/694 (67%), Gaps = 17/694 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G YV+NP L++ + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246 E A++++E +L+AI FGH E K ++ ++ + +P+ K+F +E EE+ Q Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHI--QPV---KKEFIPVERDEELVQ 244 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298 +K + L+ + +K R + +D LK ++ + F E NE E+ ++ D+ Sbjct: 245 RVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILNDL 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG Sbjct: 305 IKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T + Sbjct: 365 DYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTE 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+D Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + Sbjct: 485 IQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L + P+VEIM I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 545 IDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I ARE+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S +R+ Sbjct: 605 DQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRIN 664 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 K DV+K GDT+ VK+ + D +G++ S KV+D+ Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698 >gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 698 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 314/689 (45%), Positives = 462/689 (67%), Gaps = 7/689 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S R+ K DV Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +K GD + VK+ + D +G++ S + +++ Sbjct: 670 LKIGDKIEVKITEIDKQGRVNASHRALEE 698 >gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 700 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 314/687 (45%), Positives = 460/687 (66%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++ G++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ QVI V+ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++GQ+++NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K ++E I + K K +++ D LE Sbjct: 184 AIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KDLE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + EK R +D ++++++ +F E+ N +I V +I + Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++++R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+ILN+M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R QL + PRV M + P++IR +IG GGK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D G+I LS K Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688 >gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6578] Length = 709 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 324/693 (46%), Positives = 466/693 (67%), Gaps = 3/693 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+V I+ GR L L TG++ARQ++GAV A YG T VLAT +K+ DF PL+V+Y Sbjct: 3 HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I + D + Sbjct: 63 EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 +P VV++VAASAA+ +S +PF+GPV +V ++G +V+NP L++ + S LD+ V+GT + Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 + MVE A ++SED +++AI + +A +L++ K+ + + ++ L++E Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELSERAGKKKLPLQEEESFPLKDE 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + L +CF+ K R K I ++++ +YF E +V E+++ ++V Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L++ +R DGR E +R I+ +VG+L RTHGS+LF RG+TQA+ + TLGT DEQ + Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L G +R +FM+HYNF P + GEV R+ RREIGHG LA RA+ VLP FPYTL Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTL 421 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+ +ILSDI G+E Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT+ GITA QMD+KI I M AL+QA+RGRLHIL M++ +SE R Sbjct: 482 DHFGDMDFKVAGTEEGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L ++ PR+ A+ P++I +IG GK IR I E +NIDDDG++ I S + Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISETFDVTINIDDDGSIVIYSKQKEKA 601 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A+ I + + PEV K+Y G+V +++DFGAF+ F R+GL HISQ+S +R+ DV Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VK V V++L+ D G++ L+M ++D++ K Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESMAK 693 >gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia goodfellowii F0264] gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia goodfellowii F0264] Length = 711 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 323/708 (45%), Positives = 461/708 (65%), Gaps = 28/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T + +KL TG+IARQ+ G+V+ G TV+L T + +K+GQDFFPLT Sbjct: 1 MFDERTYGFNLGTQQVKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+++RESRP+ +EILISR++DR IRPLF + + N ++I V+ + Sbjct: 61 VDYIEKFYASGKFPGGFVKRESRPSTDEILISRLVDRPIRPLFPEGFLNSVHIVITVVSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P ++ + S AL LS +PF G V G V Y++G+YVLNP ++ ++ + L V+ Sbjct: 121 DEINQPENLATIGVSVALGLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKSEIHLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A ++SE+V+L+AI+FGH K ++CA++ + D K Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIK----------EICAEQDKFLSQFDVKK 230 Query: 240 LE---EEMSQMIKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285 E +E++ IKE ++ + P K + + ID+L+ +K V+ SE Sbjct: 231 YEFEKKEVAPEIKEFIDSFEKNVEEAVMTPGKLEKYEAIDNLEIELFEKYVAKLESEAKE 290 Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + + +I+ KVVR +L KK R DGR + +R + +V L HGS+LF Sbjct: 291 IDENLEKEFKNYYREIEKKVVRDAILYKKYRADGRTTTEIRPLDVEVDTLPVPHGSALFT 350 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQA+V VTLG++ DEQ VD + R F +HYNF P + GE + AP RRE+GHG Sbjct: 351 RGETQALVTVTLGSKADEQIVDGIEDESRKKFFLHYNFPPYSVGEAGFLRAPGRRELGHG 410 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI VAGI Sbjct: 411 NLAERALKYVMPDQETFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+GD F +L+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+ IM +AL+ Sbjct: 471 AMGLIKEGDTFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGITREIMDIALK 530 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA GR I+++M +V+SE R ++ E P++E+M I P +I +IG GKVI+ I+E+TG Sbjct: 531 QALEGRYFIIDKMEEVISEPRPEIAENAPKIELMKIDPSKIAGLIGPAGKVIKAIIEETG 590 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDG+V I ++ A E+++ T E+N IY G+V K+M FGAFV Sbjct: 591 VSIDIEDDGSVSIFGKDPEMMKKAIELVKRQTQSVELNGIYDGKVTKLMKFGAFVEVLPG 650 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S +RVAK DV+KEG + VK++ +D K LSMK + Sbjct: 651 KEGLLHISEISHKRVAKVEDVLKEGQEIKVKVITMEDENKFNLSMKAL 698 >gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1] gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1] Length = 701 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 319/691 (46%), Positives = 463/691 (67%), Gaps = 4/691 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + H E AGRPL E G +A+Q++ +VL YG+TVVL+T V + KD DFFPLT Sbjct: 1 MSEKHVYSFELAGRPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKD-IDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 + Y+ER YAVGK+PGG+++RE RP+E+ +L R+IDR IRPLF ++N+ QVI VM Sbjct: 60 IGYEERLYAVGKVPGGFIKREGRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++SP + +M+ +S +L +S +PFEGP+ G V ++G++++NP ++E ++ +DL V+ Sbjct: 120 DHDNSPAIAAMIGSSLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDIDLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+DA+ MVE A ++ E+ +L+AI+FGH K ++ ++ + + ++ + + Sbjct: 180 GTKDAINMVEAGAKEVPEEDMLEAIMFGHEMIKQIVAFQEQIVAEIGQPKMDLNLYEVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297 + + +M + D+ + + EK+ R + ID + +++ F SE +S E ++ V Sbjct: 240 TINARVREMAEADMLAAIQVVEKHARQEAIDAVNARVLDVFESEEASDKELKQVKEVLNK 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I + VR ++ D+KVR DGR + +R +S++V LL RTHGS+LF RG TQA+ V TLG Sbjct: 300 IVKEEVRRLITDEKVRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGAL 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L + FM HYNF P + GE R GAP RREIGHG L RA+ V+P Sbjct: 360 NEHQMLDGLEVEETKRFMHHYNFPPFSVGETGRYGAPGRREIGHGALGERALKQVMPSEK 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSE+ ES+GS+S A++C S++ALM AGVPI PVAGIAMGLVK G+++ +L+ Sbjct: 420 DFPYTVRLVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGENYTVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDHLG MDFKVAGT G+TA+QMD+KI G++ I+ ALQQAK GR+ ILN M Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLNRQILEEALQQAKVGRMQILNHMLG 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +SE+R +L F P+++++ I D+IR+VIG GGK I I+++TG K++I+ DGTV I Sbjct: 540 TISETREELSAFAPKIKVITIKVDKIRDVIGPGGKQINEIIDKTGVKIDIEQDGTVYILH 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I A MI I EV KIY G+VV++ FGAFV +DGLVHISQL+ ERV Sbjct: 600 DNSQNINQAVAMIEDIVREVEVGKIYLGKVVRIEKFGAFVEIFPGQDGLVHISQLAEERV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 AKT DVV GD + VK+ + D+RG++ LS K Sbjct: 660 AKTEDVVAIGDEILVKVTEVDERGRVNLSRK 690 >gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] Length = 698 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 314/687 (45%), Positives = 461/687 (67%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP L++ +Q LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH+E K ++E ++ K + +D + + + Sbjct: 190 EAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEALVSRVQAL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R +D+LK ++ + F E NE E+ ++ D+ + V Sbjct: 250 TEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ +K+R DGR + +R + ++VG+L R HGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIAAEKIRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L Q FM HYNF + GE + AP RREIGHG L RA+ ++P T++FPYT+ Sbjct: 370 DGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + R Sbjct: 490 DALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+VEIM I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 AELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ++E+I +IT EV +IY +V ++ +GAFV +D L+HISQ+S +R+ K DV Sbjct: 610 NRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K GDT+ VK+ + D +G++ S KV+ Sbjct: 670 LKIGDTIKVKITEIDKQGRVNASHKVL 696 >gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 690 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 316/687 (45%), Positives = 458/687 (66%), Gaps = 9/687 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ GR L +E G+IA+Q++GAVL YG+T V+ V ++ ++G DFFPLTV+++E+ Y Sbjct: 1 MDLGGRTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRP+F + Y N+ Q++ + D +++P + Sbjct: 61 AVGKIPGGFIKREGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPDM 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ AS AL +S +PFEGP+ G +V I+G++++NP +++ + S L+L V+GT+DA+LM Sbjct: 121 PAMIGASCALSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQLNLAVAGTKDAILM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE AN++SE+ +LDAI FGH K ++E K+ KE + + F EEM Sbjct: 181 VEAGANEVSEETMLDAIWFGHGVIKQLVEFQEKIVAEIGKEKMEVP---FYAPPEEMVAE 237 Query: 248 IKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 I+E L+ + K R + + +K ++ F ++ N ++ + + + K+V Sbjct: 238 IEEYGAQKLKDALMDANKLEREENVAKVKAEIAEVFLEKYPD-NAKDVAYITQKLVKKIV 296 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + K+R DGR + VR +S +VGLL R HGSSLF RG TQ + V+ L + Q + Sbjct: 297 RRTISVDKIRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQIL 356 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + ++ HYNF P + GE + +P RREIGHG LA RA+ PV+P FPY + Sbjct: 357 DGLGAEETKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALRPVIPSEEDFPYAI 416 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ ES+GSSSM +VC S+L+LMDAGVPI PVAG+AMGLVKDG+ F IL+DI G E Sbjct: 417 RLVSEVLESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGEYFTILTDIQGLE 476 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT+ GITA+QMD+KI GI+++I AL QAKRGR I+ +M + +SE R Sbjct: 477 DALGDMDFKVAGTEKGITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMMECISEPR 536 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L ++ P++ + + PD+I VIG GGK+I+ IV++TGAK++IDD G V IA+ + Sbjct: 537 KELSQYAPKITTIHVDPDKIAKVIGPGGKMIKKIVDETGAKIDIDDTGRVFIAAVNTEAA 596 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A EMI IT EV +Y G+V ++M+FGAFV ++GLVHISQLSTE V K DV Sbjct: 597 NKAIEMIEGITAEAEVGNVYTGKVTRLMNFGAFVEILPGKEGLVHISQLSTEHVDKVEDV 656 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V GD + VK+ + D++G+I LS K V Sbjct: 657 VSVGDEIVVKVTEIDNKGRINLSRKAV 683 >gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM 273] gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM 273] Length = 732 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 338/711 (47%), Positives = 472/711 (66%), Gaps = 36/711 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71 G+ + +ETGR+A+Q+DGA + G+T+V+ATVV R QDFFPL V Y+E+ YA G Sbjct: 12 GKTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RE+RP+E EIL +R+IDR++RPLF Y +ETQVIINV+ D ++ V+ Sbjct: 72 KFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYHETQVIINVISSDQQNDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PFE + +V +NG +++NP +DE +GS +D+ + GT D + M+E Sbjct: 132 LAASAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDIDISIGGTADTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQMI 248 E ++SE +LDAI FGH K + + ++LA AK + F+ L+ E+S+ + Sbjct: 192 EMKEISEAEMLDAIKFGHEAIKKLCQLQNELAGEVAKA-----KRPFTPLQVPAELSEYV 246 Query: 249 KE----DLRVSCFIP-EKYVRCKQIDDLK----KKMVSYFS------------SEHSSWN 287 K L+ + P K VR + + KK + +FS S+ N Sbjct: 247 KNACESSLKELAYKPLAKEVRADETKAIYSETVKKAIEHFSAAFGPEALAADPSKALCLN 306 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E I + V+R ++LD R+DGR+ E VR I+ ++G++ R HGS+LF RG+TQ Sbjct: 307 EHIIEEEIHSFEKNVMRRMILDDGKRLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQ 366 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 A+V VTLGT++D Q VD+L+ + FM+HYNF P + GEV R+G+ RREIGHG LA R Sbjct: 367 ALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGSTGRREIGHGNLAER 426 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 +I V P +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ KPV+GIAMGL+ Sbjct: 427 SIKMVAPGEQEFPYTVRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLI 486 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 KDG+++ +LSDI G+EDHLG MDFKVAGT GITA QMD+KI G+ +I+ AL QA+RG Sbjct: 487 KDGEEYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILENALAQARRG 546 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HIL++M + + SR +L ++ PR+ + +P + I +IG GG+ IR I E+TGA++NI Sbjct: 547 RFHILDKMEEAIPASREELAQYAPRLTAIQVPVESIGLIIGKGGETIRSITEETGAEINI 606 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGL 646 +DDGTV IA SS +AA E+I+++ PEV IY G+V V D GAFV F DGL Sbjct: 607 EDDGTVTIACSSNEGTKAAVEIIKALIAKPEVGTIYVGKVRDVRDELGAFVEFIPKTDGL 666 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692 VHIS++S ERV K SD +K GD + VKL+D D R GK + LSMK VD+ Sbjct: 667 VHISEISRERVTKVSDHLKVGDRIKVKLVDIRKDPRTGKTRFALSMKAVDE 717 >gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6192] gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6192] Length = 709 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 324/693 (46%), Positives = 464/693 (66%), Gaps = 3/693 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+V I+ GR L L TG++ARQ++GAV A YG T VLAT +K+ DF PL+V+Y Sbjct: 3 HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I + D + Sbjct: 63 EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 +P VV++VAASAA+ +S +PF+GPV +V ++G +V+NP L++ + S LD+ V+GT + Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 + MVE A ++SED +++AI + +A +L + KE + + ++ L++E Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELRERAGKEKLPLLEEESFPLKDE 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + L +CF+ K R K I ++++ +YF E +V E+++ ++V Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L++ +R DGR E +R I+ ++G+L RTHGS+LF RG+TQA+ + TLGT DEQ + Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L G +R +FM+HYNF P + GEV R+ RREIGHG LA RA+ VLP FPYTL Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRLYT-GRREIGHGHLAHRALEAVLPSKDDFPYTL 421 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+ +ILSDI G+E Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT+ GITA QMD+KI I M AL+QA+RGRLHIL M++ +SE R Sbjct: 482 DHFGDMDFKVAGTEDGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L ++ PR+ A+ P++I +IG GK IR I E +NIDDDG++ I S Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISESFDVTINIDDDGSIVIYSKQKENA 601 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A+ I + + PEV K+Y G+V +++DFGAF+ F R+GL HISQ+S +R+ DV Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VK V V++L+ D G++ L+M ++D++ K Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESKAK 693 >gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp. X514] gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X561] gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X513] gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X514] gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X561] gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X513] Length = 700 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 313/687 (45%), Positives = 462/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++ G++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ QVI V+ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF+GP V ++GQ+++NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K ++E I + K K +++ D +LE Sbjct: 184 AIVMVEAGAKEVPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + EK R +D ++++++ +F E+ N +I V +I + Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++++R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R QL + PRV M + P++IR +IG GGK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D G+I LS K Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688 >gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 700 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 313/687 (45%), Positives = 460/687 (66%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++ G++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ QVI V+ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++GQ+++NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K ++E I + K K +++ D LE Sbjct: 184 AIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KDLE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + EK R +D ++++++ +F E+ N +I V +I + Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++++R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R QL + PRV M + P++IR +IG GGK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D G+I LS K Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688 >gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 701 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 314/687 (45%), Positives = 461/687 (67%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWA RPL +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPL VNY+E+ YA Sbjct: 11 EWANRPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLMVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q+I V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+YV+NP +++ + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRLDLEVAGHRDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247 E A++++E +LDAI FGH E K +++ ++ E I + +++EE+++ + Sbjct: 190 EAGASEITEKEMLDAIFFGHEEIKRLVDFQQEIIDYLQPEKTEFIPKERNAEVEEKVTAL 249 Query: 248 IKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 +E L+ + +K R + ID ++ ++V+ F E + N+ E+ S+ D+ + V Sbjct: 250 TEEKGLKDAIQTFDKKEREENIDAIRDEVVAEFEDEENPDNDEVIAEVNSILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + D+KVR DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG + Q + Sbjct: 310 RRQIADEKVRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P T FPYT+ Sbjct: 370 DGLGTEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTKDFPYTV 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D++ IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT+ GITA+QMD+KI G++ I+ AL+QA+ GRL ILN M + + + R Sbjct: 490 DALGDMDFKVAGTEKGITAIQMDIKIDGLTREIIEEALEQARVGRLTILNHMLETIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+VE M I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + I Sbjct: 550 PELSAYAPKVETMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQDMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ARE+I IT EV ++Y +V ++ +G FV +D L+HISQ++ +R+ K DV Sbjct: 610 NRAREIIEDITREAEVGQVYNAKVRRIEKYGTFVELFPGKDALLHISQIANQRINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K GDT+ VK+ + DD+G++ S + + Sbjct: 670 LKLGDTIEVKVTEIDDKGRVNASHRAL 696 >gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] Length = 689 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 311/694 (44%), Positives = 463/694 (66%), Gaps = 13/694 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + EI+ GR L +E G++A+Q++GAVL YG+TVVL T ++ ++G DFFPLTV+Y Sbjct: 1 MQSFEIDLGGRKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF ++N+ Q++ V+ + + Sbjct: 61 EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP----RLDEDQGSLDLFVS 179 + + +M+ AS AL +S +PF GP+ G +V YING +V+NP R D D L+L V+ Sbjct: 121 NPAEIAAMLGASCALTISDIPFMGPIAGVRVGYINGSFVINPTEEQRADSD---LNLTVA 177 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKD 236 G+ DAV+MVE AN+L E++VLDAI+FGH E + ++E + + C KE P V K Sbjct: 178 GSYDAVMMVEAGANELPEEIVLDAILFGHAEIRRLVEFQQNIQRTCGKEKQIPAVF--KV 235 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 +LEE++ + L + +K+ R I +K++ + +F+ E+ + EI + Sbjct: 236 SEELEEKVRSYAEARLDAATRNSDKFARDADISAIKEETIVHFTEEYPDAVK-EIAQILY 294 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I+ +VR ++ +K+R DGR + VR +S +VG+L R HGS LF RG TQ + V TLG+ Sbjct: 295 RIEKGIVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGS 354 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +D L ++ HYNF + GE M +P RREIGHG LA RA+ P++P Sbjct: 355 IGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSI 414 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL Sbjct: 415 EDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSIL 474 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED LG MDFKVAGT GITA+QMD+KI GI+ +I+ AL+QAK+GR IL+ M Sbjct: 475 TDIQGMEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILASALEQAKQGRAFILSRML 534 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + + +L + PRVE ++I ++IR+VIG GGKV+R I+++TG ++I +DG + I Sbjct: 535 ECIDKPAEELSPYAPRVETISIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFIT 594 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S + + AR+MI I +V ++Y G+V + + FGAFV ++GL HISQ++ R Sbjct: 595 SPNTEAMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQIAKHR 654 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V DVV GD + VK+++ D++G+I +S KV+ Sbjct: 655 VENIEDVVHIGDQLEVKVVEIDEKGRINVSHKVL 688 >gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 713 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 324/703 (46%), Positives = 455/703 (64%), Gaps = 15/703 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ GR + ETGRI RQ+ GA+ YG+TVV A ++G DFFPLT ++ER Y Sbjct: 10 LQVGGRTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCEFEERLY 69 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP+E L +R+IDR IRPLF + Y+N+ QV+ VM D + V Sbjct: 70 AAGKIPGGFIKREGRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQDCPTDV 129 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 ++ AASAAL +S +PFEGP+ G V ++GQ+V+NP +D+ S + L V+GT+DA++M Sbjct: 130 SAINAASAALTISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQMYLTVAGTKDAIVM 189 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKEPIVIDSKDFSK-LE 241 VE AN++SE+ +LDA+IF H E K + E I + A AKE + K+ + L Sbjct: 190 VEAGANEISEEQMLDAMIFAHEEIKKIAEFIEQYREEAFAAGLAKEKSQVVRKERPQDLI 249 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 +++ + + EK R + +D ++++ + YF ++ E I ++ E Sbjct: 250 DQVKAFAYAKFDQAVRVEEKLAREEAVDQVRQETIEYFEPQYGEEPEIMATINNIMESFI 309 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR ++ + +R DGR + +R I+ +V L RTHGS++F RG TQ + V TLG D Sbjct: 310 HQIVRRLITVEHIRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVATLGAVSD 369 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +D L + +M HYNF P + GEV M AP RREIGHG LA RA+ P++P A+F Sbjct: 370 EQIIDGLGLEESKRYMHHYNFPPFSVGEVRPMRAPGRREIGHGNLAERALIPMIPGEAEF 429 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYTLR+VSE+ ES+GSSSMA+VCGS+LALMDAGVPI PVAGIAMGL+++ + ILSDI Sbjct: 430 PYTLRLVSEVLESNGSSSMASVCGSTLALMDAGVPIKAPVAGIAMGLIQEESQYAILSDI 489 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT G+TA+QMD+KI G+S I+ AL+QAK GR+ IL++M V+ Sbjct: 490 QGLEDHDGDMDFKVAGTAKGVTALQMDIKIKGVSREILAQALKQAKEGRMFILDKMLAVI 549 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E R +L PR+ I PD+IR VIG GGK I+ I+E+TG K++I+DDG V I++ Sbjct: 550 GEPRKELSPHAPRIISFTIHPDKIREVIGPGGKTIKKIIEETGVKIDIEDDGRVFISAVD 609 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLS 653 E A +I+S+T ++ +IYKG+VV+VMDFGAFV ++GLVHISQL Sbjct: 610 GEAGEKAHSIIQSMTQEVQIGQIYKGKVVRVMDFGAFVEVIPGVLGLQGKEGLVHISQLD 669 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 RVAK D+V EGD + VK + D +G++ LS K + GK Sbjct: 670 VNRVAKVEDIVHEGDEILVKAIGIDKQGRLNLSRKEAIGSQGK 712 >gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum EG2] gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum EG2] Length = 705 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 310/697 (44%), Positives = 462/697 (66%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLQVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YAVGK+PGG+++RE RP+ L +R+IDR IRP+F+ ++NE QV VM Sbjct: 60 INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCSPAMAAMLGSSLALSISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ A+ MVE A ++SED +L A++FG K ++ ++ K + + + Sbjct: 180 GTKKAINMVESGAKEVSEDDMLGALLFGFEAIKELVAFQEEIVAAVGKPKMEVTLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEG----EIVS 293 L++E+ + ++ + EK R +ID++K+ + ++ + + +EG E+ Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDNVKETVKEVYAEKFAGHEDEGQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R ++++VGLL R HGS LF RG TQA+ T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L + F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ ILN Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L + P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTIAAPREELSPYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T +V ++Y G+VV+V FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K DVVKEGD V VK+ + D +G+I LS K + Sbjct: 660 NERVNKVEDVVKEGDEVLVKVTEIDKQGRINLSRKAL 696 >gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus haemolyticus JCSC1435] gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus haemolyticus JCSC1435] Length = 700 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 314/691 (45%), Positives = 463/691 (67%), Gaps = 9/691 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +E G++A+Q++GAVL YG+TVVL+T V + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 E A++++E +L+AI FGH+E K ++ E + + KE + ++ +D + + + Sbjct: 190 EAGASEITEKEMLEAIFFGHDEIKRLVAFQEEVVAHIQPVKKEFVPVE-RDEALVSRVKT 248 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302 ++ L+ + +K R + +D LK ++ + F E NE E+ ++ D+ + Sbjct: 249 LTEEKGLKETVLTFDKQQRDENLDTLKAEIATEFVDEADPENELLIDEVYAILNDLVKEE 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q Sbjct: 309 VRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQL 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L Q FM HYNF + GE + AP RREIGHG L RA+ ++P T +FPYT Sbjct: 369 IDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTTEFPYT 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G Sbjct: 429 VRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGM 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + + Sbjct: 489 EDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQP 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P+VEIM I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 549 RKELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAIDQDM 608 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I ARE+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ K D Sbjct: 609 INRAREIIEDITREAEVGQVYNAKVKRIEKYGAFVELFAGKDALLHISQISKERINKVED 668 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V+ GD++ VK+ + D +G++ S K +D+N Sbjct: 669 VLSIGDSIDVKITEIDKQGRVNASHKALDEN 699 >gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. mediasiatica FSC147] gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 693 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 316/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G +VL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K + +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRMEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] Length = 689 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/695 (45%), Positives = 467/695 (67%), Gaps = 15/695 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + E++ GRPL +E G++A+Q++G+VL YG+T VL ++G DFFPLTV++ Sbjct: 1 MQSFEMQVGGRPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDF 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q+I V+ D + Sbjct: 61 EEKMYAAGKIPGGFIKREGRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P + M+ AS AL +S +PF GP+ G +V ++G+ V+NP + S L+L V+G+ Sbjct: 121 NAPEIAGMIGASCALCVSDIPFAGPIAGVKVGRVDGELVINPTEAQRAVSDLNLTVAGSH 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-- 240 DAV+MVE AN+L E+V+L+AI+FGH E + ++E ++A C KE K KL Sbjct: 181 DAVMMVEAGANELPEEVILEAILFGHKEIQRIVEFQQEIAAACGKE------KREVKLFL 234 Query: 241 -EEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 EE+ + I++ L + P+K R + I + +++ +F +++ N EI +V Sbjct: 235 APEELDRAIRDYASSRLDEAVRNPDKLDRDEHIAAIGAEVLEHFLADYPE-NAKEIAAVT 293 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 I + VR ++ +K+R DGR + VR +S +VGLL RTHGS LF RG TQ + + TLG Sbjct: 294 HKIVKESVRRMITHEKIRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLG 353 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + DEQ +D L Q ++ YNF + GE P RREIGHG LA RA+ P++P Sbjct: 354 SVGDEQIIDGLGPEQSKHYIHQYNFPGYSVGEARPARGPGRREIGHGALAERALLPMIPS 413 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVKDGD + I Sbjct: 414 LDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKDGDHYTI 473 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT+ G+TA+QMD+KI GI+ +I++ AL QAKRGR IL +M Sbjct: 474 LTDIQGMEDALGDMDFKVAGTEKGVTAIQMDIKIAGITRDILLSALSQAKRGRAFILEKM 533 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + L + PRV +M I D+IR VIG GGK I+ I+++TGA+++I +DGT+ I Sbjct: 534 LAVIDKPAADLSPYAPRVTVMKIHVDKIREVIGSGGKTIKKIIDETGAQIDIQEDGTIFI 593 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A++ + A+++I I EV +YKG+V ++M+FGAFV ++GL HISQL+ Sbjct: 594 AAADGEGAKKAQQIIEDIVRDVEVGAVYKGRVTRIMNFGAFVEILPGKEGLCHISQLARH 653 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RVA+ DVV EGD + VK+++ D +G++ LS KV+ Sbjct: 654 RVAQVEDVVHEGDELEVKVVEIDKQGRVNLSHKVL 688 >gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 693 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ G DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ + G +V Y NG+Y+LNP +E + LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246 VE EAN L E V+L I++ H K +I +ISKLAK+ +K I +KL + ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSISKLAKVSSKPRIEYTIYQINKLLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + IP K R ++++L+K ++ + F+S+ + ++E E++ F DI+ +V Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYSEKEVLEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G +++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ A +QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNEVIREH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ IM + P +I++V+G GG V++GIVE+TGA+++ D G VKI + Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A+ M+ I E +IYKG++VK++D GAFV+ G++DG + S++ E+ ++ Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] Length = 818 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 325/692 (46%), Positives = 454/692 (65%), Gaps = 13/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TVE+ G+ +K ETGRIA+Q+ GA T G+ VLAT V K+G DFFPLTV Y+E Sbjct: 6 TVEL-AGGKQIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYRE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+ V D E+ Sbjct: 65 FTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P V+ + AS AL LS +PF GPV ++ YI+ QY++NP E S L++ V GT+D Sbjct: 125 PDVLGINGASCALALSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKLNIMVVGTKDG 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239 ++MVE A ++ E+VV+ AI F H E K ++ I L K P+ D++ + Sbjct: 185 IVMVESGAKEIPEEVVVGAIEFAHEEIKKIVAGIEDLVSRAGKTKRTVTPLENDTEYAAA 244 Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L+ ++ + + + L + E Y + K+I D KK + E + ++ FE + Sbjct: 245 LKAKVGESLADALNTKKYPKFESYAKVKEIKDALKKDLP----EGDAAAAKKLGKYFEGL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + R +L+ ++R D R + +R I+ + G+L R HGS+LF RG+TQA+V TLGT + Sbjct: 301 RETIFREQVLNDRIRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTD 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q ++S G Q+ FM+HYNF P + GEV RM RREIGHG LA RAI VLP + Sbjct: 361 DAQRMESYEGEQKRKFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPGEDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 PYTLR+VS+I ES+GSSSMATVCG+SL+LM AG+P+ VAG+AMGLVK+GD + IL+D Sbjct: 421 SPYTLRVVSDILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAILTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I+G EDH G MDFKVAGT +GITA+QMD+KI GI+ IM AL+QA+ GRL +L++M + Sbjct: 481 IAGAEDHYGDMDFKVAGTRNGITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDAI 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +S++ + F PR+ + IP D+IR++IG GGKVIRGIV+ TG K+++DD G V +ASS Sbjct: 541 ISKANEEKSAFAPRIHTIQIPTDKIRDLIGPGGKVIRGIVDATGVKIDVDDTGRVNVASS 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A +MI IT VPEV K Y G+VV++ +FGAFV DGL+H+S+++ RV Sbjct: 601 DAEGLAKAIQMISDITAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRVK 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D +++GD V VK+L + +IKLS K V Sbjct: 661 DVKDELRDGDQVLVKVLSIEGN-RIKLSRKAV 691 >gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus aciditrophicus SB] gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus aciditrophicus SB] Length = 705 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 328/696 (47%), Positives = 469/696 (67%), Gaps = 22/696 (3%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+AGR + ++TG +A Q+DGAV+ YG+TVV+ T V ++ ++G DF PLTV+YQE TYA Sbjct: 8 EFAGRNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEMTYA 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP E EIL SR+IDRSIRPLF K Y ETQ++ V+ D E+ V Sbjct: 68 AGKIPGGFFKREGRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDSDVA 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLF------VSGTQ 182 +++AASAAL +S +PF+GP+VG +V ++GQ++ NP +L++++G L+L+ V GT+ Sbjct: 128 ALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGDLNLYLVGRKVVPGTE 187 Query: 183 D-----AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232 ++M+E EA Q+ E+ V+ I FG +PVIE +L K E + I Sbjct: 188 GRPYDVNLVMLEGEAQQVEEEHVIAGIDFGLECMRPVIELQDQLRSALGKPKREFEAVEI 247 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 D +++ E+ + ++E R+S K R +D+++ ++ +++ + Sbjct: 248 DDALLAEVSEKAAVRMREAYRMS----RKLDRHAALDEIRNSVLKAVTADEAGLRL-RTA 302 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + E ++ ++VR V+L +K R+DGR +R ISA+VG+L R HGS+LF RG+TQ++ + Sbjct: 303 AALEALEKRIVRDVILKEKQRIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAAL 362 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT DEQ +D ++G + F++HYNF P GE + +P RREIGHG LAR+A+ PV Sbjct: 363 ALGTSSDEQRLDYVAGEETRSFILHYNFPPYCVGEARPLRSPGRREIGHGNLARKALMPV 422 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P +FPYT+RIVSEI S+GSSSMATVCG L LMD GVP+ VAGIAMGL+K+G+ Sbjct: 423 IPSPEEFPYTIRIVSEILSSNGSSSMATVCGGLLCLMDGGVPVKGVVAGIAMGLLKEGEQ 482 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +ILSDI GDEDH G MDFKV GT GITAMQMD+KI GI+E+I+ AL QA+ GRL I+ Sbjct: 483 VVILSDILGDEDHAGDMDFKVCGTSKGITAMQMDIKIDGINEDILRKALAQAREGRLFII 542 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +++ +SE R +L + PR+ + + P+++R VIG GGK IR IV +TG ++++DDGT Sbjct: 543 DKILATISEPRKELSIYAPRITTVKVKPEKVRAVIGTGGKNIRQIVSETGVTIDVEDDGT 602 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IASS + A M+R +T+ EV KIY+G V KV+DFGAFV +GL+HISQL Sbjct: 603 VTIASSDMEASARAIAMVRWLTEDAEVGKIYRGTVKKVVDFGAFVEILPGTEGLLHISQL 662 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + ERV K +D+V EGD V VK+L+ D +GKI+LS K Sbjct: 663 AKERVNKVTDIVNEGDEVIVKVLEVDKQGKIRLSRK 698 >gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp. AT1b] gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp. AT1b] Length = 738 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 315/687 (45%), Positives = 453/687 (65%), Gaps = 10/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EW GRPL +E G++A+Q++G+ L YG+TVVLATV ++ KD DFFPLTVNY+E+ Y+ Sbjct: 11 EWGGRPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKD-LDFFPLTVNYEEKLYS 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+LRRE RP EN IL SR+IDR IRPLF ++++ QV+I VM +D + S + Sbjct: 70 VGKIPGGFLRREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPDCSAEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 M+ S AL +S +PF+GP+ G V ++G++V+NP + ++ L+L V+GT A+ MV Sbjct: 130 GMLGTSIALSISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDLELQVAGTSTAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS--- 245 E AN++ EDV+L++I+FGH E K +I ++ + K SK +E ++ Sbjct: 190 EAGANEVPEDVMLESILFGHEEIKRLIAFQQEIVEAVGKPKF---EYTVSKYDEALTAEL 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVV 303 + + ++ + + EK+ R + I+++ K V+ + + + GE+ + V Sbjct: 247 EAARPEIVEAVQVEEKHARDEAINEVIAKYVAMYEARLADEPSKLGEVSGILNKFVKDEV 306 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ +KVR DGR + +R ++++VGLL R HG LF RG TQ + V TLG D Q + Sbjct: 307 RRLITVEKVRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDAQII 366 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D + + FM HYNF P + GE + AP RREIGHG L RA+ P++P+ A FPYT+ Sbjct: 367 DGIGLEENKRFMHHYNFPPFSVGEARPVRAPGRREIGHGALGERALLPIIPKEADFPYTI 426 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGL+ +G+ + +L+DI G E Sbjct: 427 RLVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIMEGEHYTVLTDIQGLE 486 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI GI+ I+ AL+QA+ GRLHIL+ M + L R Sbjct: 487 DHLGDMDFKVAGTKDGITALQMDIKIAGITREILEEALEQARVGRLHILDHMLETLETPR 546 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 QL ++ P++ M I PD+IR+VIG GGK+I I++QTG K++I+ DGTV IAS+ I Sbjct: 547 TQLSKYAPKIVTMTINPDKIRDVIGPGGKMINSIIDQTGVKIDIEQDGTVFIASTDQEGI 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A MI I V ++Y V ++ FGAFV +D LVH+S+ S ERVA DV Sbjct: 607 DLAMSMIGDIVREVVVGEVYDATVRRIEKFGAFVELFKGKDALVHVSEFSLERVANVEDV 666 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VK GD++ VK+ + DD+G++ S K + Sbjct: 667 VKLGDSIQVKVTEIDDKGRVNASRKAL 693 >gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] Length = 721 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 314/689 (45%), Positives = 463/689 (67%), Gaps = 3/689 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETGRIA+Q+ G+V+ YG+TVVL+T ++G DFFP+TV+Y+ER Sbjct: 5 KMQLAGRELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERL 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RPTE IL +R+ DR RPLF K ++N ++ V+ D ++ P Sbjct: 65 YAVGKIPGGFIKREGRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V+S+V ASAAL +S +PF GP+ V +I+G+ V+NP ++ +Q L L V+ T+D ++ Sbjct: 125 VLSIVGASAALSISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSKLHLVVASTKDGIM 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMS 245 MVE A++L+ED VL+AI+ G + K ++ ++ +E + ++ + +++ E++ Sbjct: 185 MVEAGAHELTEDEVLEAIMAGDDANKEIVALQEQMVAEVGQEKMQVNVFQPDAEVAEQVR 244 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 Q + + + EK+ R I + KK+ + +F+ E NE ++ FE++ + +RT Sbjct: 245 QFCSDKVAQAVRTIEKHARETAISEAKKETIEHFA-EIFPENEKDVKVAFENLVKETMRT 303 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L + +R DGR S+ +R ++++VG+L RTHGS LF RG TQ + V TLG + Q +D Sbjct: 304 MILKENLRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDG 363 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + +M HYNF P + GE M SRR+IGHG LA +A+ PVLP FPYT+R+ Sbjct: 364 LGLEESKRYMHHYNFPPYSVGEAGFMRGASRRDIGHGALAEKALVPVLPSEEDFPYTIRL 423 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSM +VCGS+L++MDAGVP+ KPV+G+AMGL+ +GDD ILSDI G ED Sbjct: 424 VSEVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAILSDIQGMEDF 483 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI G+S I+ ALQQAK G +HI+N+M++V+ E R + Sbjct: 484 LGDMDFKVAGTPEGITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTEVIPEPRKE 543 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L PR+ + I PD+IR+VIG GGK+I IV +T A ++I+ DGT+ IA+ S + Sbjct: 544 LSPHAPRIMTININPDKIRDVIGPGGKMINKIVAETDADIDIEPDGTIYIAAVSPESGKK 603 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A EMI S+T + ++Y G+V +V +GAFV +DGLVHIS+L+ ERV KT DVV Sbjct: 604 ALEMIESLTKEVQPGEVYTGKVTRVEKYGAFVEILPGKDGLVHISRLAHERVEKTEDVVN 663 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 GD + VK++ DDRG+I LS + N Sbjct: 664 IGDEIPVKVIGIDDRGRIDLSRRAAIPNA 692 >gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter tengcongensis MB4] gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Thermoanaerobacter tengcongensis MB4] Length = 707 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 308/687 (44%), Positives = 463/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++TG++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y++GKIPGG+++RE +P+E IL +R+IDR IRPLF + Y+N+ QVI V+ D ++ Sbjct: 64 ERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDA 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++G++V+NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K ++E I + K K +V+ D +LE Sbjct: 184 AIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + PEK R +D ++++++ +F E+ N +I V I + Sbjct: 243 EKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++K+R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMIKEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++ + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILEGIGDEEFKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGIAMGL+K+ D+ +IL+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ G+TA+QMD+KI GI +I+ MAL++A++ RL++L +M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L ++ PRV M + P++IR++IG GK I I+ +TG K++I++DG + I + +L Sbjct: 542 PRKELSKYAPRVVRMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPNLE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT EV IY G+V+++ FGAFV ++GLVHIS LS +RV + Sbjct: 602 AGERAKQMIEAITKDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ + D G+I LS K Sbjct: 662 DVVKVGDNILVKVTEIDKLGRIVLSRK 688 >gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 690 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 313/695 (45%), Positives = 463/695 (66%), Gaps = 14/695 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + EI+ GR L +E G++A+Q++GAVL YG+TVVL T ++ ++G DFFPLTV+Y Sbjct: 1 MQSFEIDLGGRKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF ++N+ Q++ V+ + + Sbjct: 61 EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP----RLDEDQGSLDLFVS 179 + P + +M AS AL +S +PF GP+ G +V YING++V+NP R D D L+L V+ Sbjct: 121 NPPEIAAMFGASCALTVSDIPFMGPIAGVRVGYINGEFVINPTEEQRADSD---LNLTVA 177 Query: 180 GTQDAVLMVELEANQLSEDVVLDAII-FGHNECKPVIEAISKLAKMCAKE---PIVIDSK 235 G+ DAV+MVE AN+L E++VLDAII FGH E + ++E + + C KE P V K Sbjct: 178 GSYDAVMMVEAGANELPEEIVLDAIILFGHAEIRRLVEFQQNIQQACGKEKQIPSVF--K 235 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +LEE++ + L + +K R I +K++ +++F+ E+ + EI + Sbjct: 236 VSEELEEKVRSYAEARLDTATRNSDKLSRDADISAIKEETIAHFAEEYPDAVK-EIAQIL 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 I+ +VR ++ +K+R DGR + VR +S +VG+L R HGS LF RG TQ + V TLG Sbjct: 295 YHIEKGIVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLG 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 DEQ +D L ++ HYNF + GE M +P RREIGHG LA RA+ P++P Sbjct: 355 AIGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPS 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ I Sbjct: 415 IEDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSI 474 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT G+TA+QMD+KI GI+ +I+ AL+QAK+GR IL++M Sbjct: 475 LTDIQGMEDALGDMDFKVAGTSKGLTAIQMDIKIAGITRDILASALEQAKKGRAFILSKM 534 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + + +L + PRVE + I ++IR+VIG GGKV+R I+++TG ++I +DG + I Sbjct: 535 LECIDKPAEELSPYAPRVETITIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFI 594 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S + + AR+MI I +V ++Y G+V + + FGAFV ++GL HISQL+ Sbjct: 595 TSPNTEAMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKH 654 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV DVV GD + VK+++ D++G+I +S KV+ Sbjct: 655 RVENIEDVVHIGDQLEVKVVEIDEKGRINVSHKVL 689 >gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium autotrophicum HRM2] gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2] Length = 695 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 316/690 (45%), Positives = 456/690 (66%), Gaps = 12/690 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E G+ L G+IA+Q+ G+V+ YGET+VL T V + +D F PLTV YQE+ YA Sbjct: 8 ELNGKEFSLRAGKIAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQEKIYA 67 Query: 70 VGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 G+IPG Y RRE RP+E E L +R+IDR IRPLF K + +E QVI V+ D E+ P V Sbjct: 68 AGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPDV 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++V ASAAL +S +PF GP+ G +V I+G+++ NP + E + S ++L V+G++ V+M Sbjct: 128 LALVGASAALQMSDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSKTGVVM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEE 242 VE A+ +SE +L+AI FGH +P+I+ L K KE P ++D + +K+ E Sbjct: 188 VEGGADVVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKEKRAYTPPLVDEELMAKVVE 247 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + ++ + + K+ R K +DD++ +++ E + EI S+F D+ KV Sbjct: 248 ----LAQDKIHTAVQTQGKFERVKALDDVRTEVIETLG-EAFADRINEIKSMFGDLVKKV 302 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++L + R+DGR + VR+I+ +VG+L R HGS+LF RG+TQ + V+TLG+ DEQ Sbjct: 303 SRKIVLTENQRIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQR 362 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +++L+G + +FM+HYNF P + GE R G PSRR++GHG LA RA+ VLP A F YT Sbjct: 363 IETLNGNETRNFMLHYNFPPFSVGECRRAGGPSRRDVGHGNLAHRALARVLPDQADFEYT 422 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+V E+ ES+GSSSM TVC +LALMD GVPI+ PV+GIAMGLV D D+ ++L+DI GD Sbjct: 423 IRLVGEVMESNGSSSMGTVCAGTLALMDGGVPIAAPVSGIAMGLVSDADNTVVLTDILGD 482 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDH G MDFKVAGT+ GITA+QMD+KI + + ++V AL QA+ GRLHIL M L Sbjct: 483 EDHFGDMDFKVAGTEQGITALQMDIKIRELPKAVLVKALDQARIGRLHILKRMLATLEIH 542 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ + P++ + I PD+IR +IG GGK+IR I T + +DD G +KIA+ + + Sbjct: 543 RDKMSPYAPKIITVKINPDKIREIIGPGGKMIRSIQADTNTNIEVDDSGLIKIAAENQED 602 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 EAA +++ I PE+ IY+G+VVK DFGAFV DGLVHIS+L+ RV K +D Sbjct: 603 GEAAAKIVSDIGMDPEIGGIYEGEVVKTTDFGAFVRIKTGTDGLVHISELANHRVKKVTD 662 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 VVKEG+ + VK+L+ GKI+LS K +++ Sbjct: 663 VVKEGEVIRVKVLEITRDGKIRLSCKALEE 692 >gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 693 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ G DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ + G +V Y NG+Y+LNP +E + LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246 VE EAN L E V+L I++ H K +I +I KLAK+ +K I +KL + ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSIGKLAKVSSKPRIEYTIYQINKLLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + IP K R ++++L+K ++ + F+S+ + + E EI+ F DI+ +V Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYAEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G +++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARTGRLHILGIMNEVIREH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ IM + P +I++V+G GG V++GIVE+TGA+++ D G VKI + Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A+ M+ I E +IYKG++VK++D GAFV+ G++DG + S++ E+ ++ Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii KSM-K16] gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii KSM-K16] Length = 710 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 313/688 (45%), Positives = 457/688 (66%), Gaps = 4/688 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +E G++A+Q++GAVL YG+T VL+T + KD FFPLTVNY+ Sbjct: 6 HEFSIDWAGRTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA GKIPGG+++RE RP+E IL SR+IDR IRPLF ++N+ QVI VM D ++ Sbjct: 65 ERLYAAGKIPGGFIKREGRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDA 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 SP + +M+ +S AL +S +PFEGP+ G V ING++++NP + + +DL V+GT++ Sbjct: 125 SPEMAAMIGSSLALCVSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGTKE 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A ++ EDV+L+AI+ GH K +I K+ ++C KE + K F ++LE Sbjct: 185 AINMVEAGAKEVPEDVMLEAILAGHENIKKMIAFQEKVVEVCGKEKREVQLKTFDAELEA 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + + ++ + I EK+ R ID++ V S + S N E+ + + + Sbjct: 245 RLRESAEASIKEAVRIAEKHARQDAIDEIIAAQVEQHSDD-DSINVDEVKEILQMFVKEE 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ +K+R DGR + +R +S+Q+ LL RTHGS LF RG TQA+ V TLG D Q Sbjct: 304 VRRLITVEKIRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQV 363 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + FM HYNF + GE + AP RREIGHG L RA+ V+P +FPYT Sbjct: 364 LDGLGIEETKRFMHHYNFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQEFPYT 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ +L+DI G Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQGEHMTVLTDIQGM 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKVAGT +G+TA+QMD+KI GI+ ++ AL+QAK+GR+ IL+ M + + + Sbjct: 484 EDALGDMDFKVAGTANGVTALQMDIKISGINREVLEQALEQAKQGRMKILSNMMEAIDKP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L E+ P++ + I PD+IR+VIG GKVI I+E+TG K++I+ DGTV I+S A Sbjct: 544 RAELSEYAPKILTLTINPDKIRDVIGPSGKVINKIIEETGVKIDIEQDGTVYISSLDTAM 603 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A+++I + +V + Y G+V ++ FGAFV +DGL+HISQ++ ER+ K D Sbjct: 604 NQKAKQIIEDLVREVQVGETYHGKVKRIEKFGAFVELFKGKDGLLHISQIAEERINKVED 663 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K GD V V++ + D++G++ LS KV+ Sbjct: 664 VFKLGDEVDVRVTEIDNQGRVNLSRKVL 691 >gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] Length = 692 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 311/688 (45%), Positives = 453/688 (65%), Gaps = 13/688 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E AGRP ++E G +A+ + G+ + YGET VLA + ++G DFFPL+V+Y+E+ Sbjct: 5 ETEIAGRPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQ 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+L+RE RP+E IL SR+IDR IRPLF K ++N+ QV+ VM + +++P Sbjct: 65 YAVGKIPGGFLKREGRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ AS AL +S +PF+GP V I+G+++LNP + + S L L V+GT+DA++ Sbjct: 125 IAAMIGASIALSISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSDLSLTVAGTKDAIM 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KL 240 MVE AN++SE+ +L+AI+F H E K ++ ++ ++ KD++ +L Sbjct: 185 MVEAGANEVSEETMLEAILFAHEEIKKIVAFQEEIVAAVG-----VEKKDYTLYLPTDEL 239 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 E+ + + + +K R + ID +K ++V +F E +I ++ +Q Sbjct: 240 TAEVEAFVGGKMHEAVHTEDKTERLENIDAVKTEVVEHFG-ELYPEQLNDIDTILTALQK 298 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR+++L ++R D R + VR I+A++ + R HGS LF RG+TQ + + TLG D Sbjct: 299 KEVRSLILVDRIRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDA 358 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D LS +M YNF + GE M +P RREIGHG LA RA+ P++P +FP Sbjct: 359 QVLDGLSNDTEKRYMHQYNFPGYSVGEARPMRSPGRREIGHGALAERALLPMIPPEEEFP 418 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+VSE+ S+GS+S A+VCGSSLALM AGVP+ KPVAG+AMGL+K+ + IL+DI Sbjct: 419 YAIRVVSEVLSSNGSTSQASVCGSSLALMAAGVPLKKPVAGVAMGLIKEDEKLAILTDIQ 478 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G ED LG MDFKVAGT GITA+QMD+KI GI I+ AL+QA+ GR+HIL M++ +S Sbjct: 479 GMEDFLGDMDFKVAGTKDGITAIQMDIKIHGIDREILTQALEQARIGRMHILGIMNEEIS 538 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R +L + PR+ M I PD+IR+VIG GGKVI I+E+TG K++I+DDGT+ IAS Sbjct: 539 EPRAELSPYAPRIMTMTINPDKIRDVIGSGGKVINKIIEETGVKIDIEDDGTIYIASEDG 598 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + A+ +I I EV ++Y G+VV++M+FGAFV G +DGL+HIS+L+ ERV Sbjct: 599 VAADKAKAIIEDIVKEVEVGEVYTGEVVRIMNFGAFVSLPGGKDGLIHISKLAKERVKSV 658 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD V VK+++ DD+G+I LS K Sbjct: 659 EDVVKLGDVVTVKVVEIDDKGRINLSRK 686 >gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC10] gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC10] Length = 705 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YAVGK+PGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 60 INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M+ +S AL +S +PF+GP+ G V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ K + + + Sbjct: 180 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ + ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R ++++VGLL R HGS LF RG TQA+ T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L + F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ ILN Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ L+ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K DVVKEGD + VK+ + D +G++ LS K + Sbjct: 660 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 696 >gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU144] Length = 701 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/692 (45%), Positives = 461/692 (66%), Gaps = 11/692 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+YV+NP + D++ LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 E A++++E +L+AI FGH E K ++ E I + + K+ V +D +E+ Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPI--KQEFVPVERDEDLVEKVK 247 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301 S + L+ + +K R + +D LK+++V +F E NE E+ ++ D+ + Sbjct: 248 SLTEDKGLKETVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAILNDLIKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQ 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T FPY Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPY 427 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + Sbjct: 488 MEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQ 547 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + P+V M+I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A Sbjct: 548 PREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQA 607 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ K Sbjct: 608 MINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVE 667 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 DV+K GDT+ VK+ + D +G++ S KV++Q+ Sbjct: 668 DVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699 >gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus SAFR-032] gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus SAFR-032] Length = 705 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/691 (46%), Positives = 458/691 (66%), Gaps = 8/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAVL YG+T VL++ + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QVI VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V ++G++++NP +++ +Q ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A+++ E+ +L+AI++GH E K +IE ++ K K I I + + L + Sbjct: 185 AINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLAD 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFEDIQ 299 E+ + + DL + + EK+ R I +KK +V F E +E I V + Sbjct: 245 EVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKF--EEEDRDEATIKQAKDVLNKLV 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ + TLG D Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P F Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKVAGT G+TA+QMD+KI G+S++I+ ALQQAK+GR+ IL+ M + Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SR +L + P++ M I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ Sbjct: 543 PTSRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A+++I + EV ++Y G+V ++ FGAF+ +DGLVHIS+L+ +RV K Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica ATCC 39073] gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica ATCC 39073] Length = 747 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 327/701 (46%), Positives = 464/701 (66%), Gaps = 24/701 (3%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 AGR L LETGR+A+Q+ GAV+ +YG T+VL T ++G DFFPLTV+Y+ER YA G Sbjct: 12 AGRDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+E IL +R+IDR IRPLF K Y+N+ V+ VM D + P+V + Sbjct: 72 KIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDCPPNVAGI 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190 + ASAALMLS +PF GP+ V I+ + V+NP L+ED + SL+L V+GT +A++MVE Sbjct: 132 IGASAALMLSAIPFAGPIGAVSVGLIDNRPVINPTLEEDSRSSLNLTVAGTANAIMMVEA 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKE-PIVIDSKDFSKLEEEM 244 A ++ ED++L+ I+ GH E K ++ I++ LA AKE P ++ + E + Sbjct: 192 GAKEVPEDLMLECIMQGHEEIKRIVAFINEFRAEALAMGLAKEKPELVAPQLDPAWESRV 251 Query: 245 SQMIKEDLRVSCFIP--EKYV---RCKQIDDLKKKMVSYF---SSEHSSWNE---GEIVS 293 ++ LR + EK+ R KQ+D ++++ + E + N G I Sbjct: 252 REIATPRLREVIYRSRDEKWSKQERDKQLDACREEINNLILEGQEEALAANPELPGLIKE 311 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + I+ ++VR ++L + +R+DGR E +R I+ +VG+L RTHGS LF RG+TQ + V T Sbjct: 312 LITKIEKEIVRRMILTEGIRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTT 371 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG DEQ +D L + +M HYNF P + GE + AP RREIGHG LA RA+ P++ Sbjct: 372 LGPISDEQILDDLGVDESKRYMHHYNFPPYSVGEARPIRAPGRREIGHGALAERALEPMI 431 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVPI PVAG+AMGLVK+ D Sbjct: 432 PSEEEFPYAIRLVSEVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGVAMGLVKENDQV 491 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED LG MDFKVAGT GITA+QMD+KI GI +I+ AL+QA+RGRL IL+ Sbjct: 492 AILTDIQGLEDALGDMDFKVAGTKKGITALQMDIKIAGIDRSILERALEQARRGRLFILD 551 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 ++ + E R +L + PR+ + I PD+IR++IG GGK+I+ I+E+TG +++++DDG V Sbjct: 552 KILATIPEPRKELSPYAPRMLTITIDPDKIRDIIGPGGKIIKKIIEETGVEIDVEDDGRV 611 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC------GARDGLV 647 IAS+ A E A ++I S+T E K+Y G+V +V DFGAFV ++GLV Sbjct: 612 FIASTDAAAGERALKIIESLTQDVETGKVYNGKVTRVTDFGAFVEVIPRVLGMPGKEGLV 671 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HISQL+ ERV K DVV+EGD + VK + FD +G++KLS K Sbjct: 672 HISQLANERVEKVEDVVQEGDYILVKAIGFDPQGRLKLSRK 712 >gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured Desulfobacterium sp.] Length = 697 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 322/702 (45%), Positives = 456/702 (64%), Gaps = 15/702 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 ++T ++ G+ L ++ G++A+Q+ G+V YG+TVVL T V + G DF PL+V Y Sbjct: 2 INTYRVDLGGKTLTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPG-DFLPLSVEY 60 Query: 64 QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 QE+ YA G+IPG Y RRE RP+E E L SR+IDR IRPLF K Y E QVI V+ D Sbjct: 61 QEKIYAAGRIPGNYFRREIGRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLSMDH 120 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181 E+ P +++M+ ASAAL +S +PF GPV +V GQ ++NP + E +GS +++ ++G+ Sbjct: 121 ENDPDILAMIGASAALEISDIPFAGPVASVRVIRKEGQLIVNPTIQECEGSDINIIIAGS 180 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 + V+MVE +N +SE +L+AI +GH +P+I+ L +E + +++++ E Sbjct: 181 KTGVVMVEGGSNMVSEKDMLEAIFYGHEAMQPIIDIQHNL-----RETNGVPKRNYTEKE 235 Query: 242 ------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 E++ + LR + IP K R + LK ++ +++ E +F Sbjct: 236 KDQAFVEKIEAIAATRLRENLIIPGKIERHSALRALKSELFEQLGPDYTDRKP-EFYEIF 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 D+Q K+ R +++ + R+DGR + +R I+ +VGLL R HGS+LF RG+TQ + V+TLG Sbjct: 295 YDLQKKISRDLIIKEGRRIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLG 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + DEQ V++LSG + FM+HYNF P + GE R+G PSRR+IGHG L+ RAI +LP Sbjct: 355 SGPDEQRVETLSGEELRPFMLHYNFPPYSVGETKRLGGPSRRDIGHGGLSTRAIERILPP 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +F YT+R+VSE+ ES+GSSSM TVC ++ALMD GVPI PV+GIAMGLVK+GD +I Sbjct: 415 KEEFDYTIRLVSEVLESNGSSSMGTVCSGAMALMDGGVPIKSPVSGIAMGLVKEGDQVVI 474 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDH G MDFKV GT GITA+QMD+KI + I+ AL+QA+ GR+ IL +M Sbjct: 475 LSDILGDEDHSGDMDFKVTGTRDGITALQMDIKIHELPRTILENALEQARTGRIFILEKM 534 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S+ R ++ P + + + PD+IR +IG GGK IR I +T +V IDD G VKI Sbjct: 535 LEAISQPREKISPHAPAIITIKVHPDKIREIIGPGGKTIRYIQSETNTRVEIDDYGLVKI 594 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A++S + AA +I +IT PEV +Y G VVK+MDFGAFV DGLVHISQLST Sbjct: 595 AATSKEDGAAALNLINNITMEPEVGAVYDGTVVKIMDFGAFVQIMPGTDGLVHISQLSTR 654 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K SDVVKEGD + VK+L+ GKI+LS K V ++ P Sbjct: 655 RVTKVSDVVKEGDIIKVKVLEISKDGKIRLSHKAVLEDENVP 696 >gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 715 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 11 MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 69 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YAVGK+PGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 70 INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 129 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M+ +S AL +S +PF+GP+ G V +NG+YVLNP +++ +Q ++L V+ Sbjct: 130 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 189 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ A+ MVE A ++SE+ +L A++FG + + ++ ++ K + + + Sbjct: 190 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIQELVAFQEEVVAAVGKPKMEVKLLQVDA 249 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ + ++ + EK R +ID +K + ++ + + E E+ Sbjct: 250 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 309 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R ++++VGLL R HGS LF RG TQA+ T Sbjct: 310 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 369 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L + F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 370 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 429 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 430 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 489 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ ILN Sbjct: 490 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 549 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ L+ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 550 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 609 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV+V FGAFV+ +DGLVHISQL+ Sbjct: 610 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 669 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K DVVKEGD + VK+ + D +G++ LS K + Sbjct: 670 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 706 >gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC30] gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC20] gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC30] gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC20] Length = 720 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 16 MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 74 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YAVGK+PGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 75 INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 134 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M+ +S AL +S +PF+GP+ G V +NG+YVLNP +++ +Q ++L V+ Sbjct: 135 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 194 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ K + + + Sbjct: 195 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 254 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ + ++ + EK R +ID +K + ++ + + E E+ Sbjct: 255 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 314 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R ++++VGLL R HGS LF RG TQA+ T Sbjct: 315 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 374 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L + F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 375 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 434 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 435 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 494 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ ILN Sbjct: 495 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 554 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ L+ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 555 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 614 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 615 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 674 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K DVVKEGD + VK+ + D +G++ LS K + Sbjct: 675 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 711 >gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC 7061] gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC 7061] Length = 705 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/691 (46%), Positives = 458/691 (66%), Gaps = 8/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I+WAGR L +ETG++A+Q++GAVL YG+T VL++ + K DFFPLTVNY+ Sbjct: 6 HVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QVI VM D + Sbjct: 65 ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PFEGP+ G V ++G++++NP +++ +Q ++L V+GT+D Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKD 184 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A+++ E+ +L+AI++GH E K +IE ++ K K I I + + L + Sbjct: 185 AINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLAD 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFEDIQ 299 E+ + + DL + + EK+ R I +KK +V F E +E I V + Sbjct: 245 EVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKF--EEEDRDEATIKQAKDVLNKLV 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ ++KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ + TLG D Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P F Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK G+ + +L+DI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKVAGT G+TA+QMD+KI G+S++I+ ALQQAK+GR+ IL+ M + Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SR +L + P++ M I PD+IR+VIG GK I I+E TG K++I+ DGT+ I+S+ Sbjct: 543 PASRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A+++I + EV ++Y G+V ++ FGAF+ +DGLVHIS+L+ +RV K Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ + D +G++ LS K V Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis ATCC 12228] gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis RP62A] gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis RP62A] gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU028] gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU045] Length = 701 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/692 (45%), Positives = 461/692 (66%), Gaps = 11/692 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+YV+NP + D++ LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 E A++++E +L+AI FGH E K ++ E I + + K+ V +D +E+ Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPI--KQEFVPVERDEDLVEKVK 247 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301 S + L+ + +K R + +D LK+++V +F E NE E+ ++ D+ + Sbjct: 248 SLTEDKGLKDTVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAILNDLIKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQ 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T FPY Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPY 427 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + Sbjct: 488 MEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQ 547 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + P+V M+I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A Sbjct: 548 PREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQA 607 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ K Sbjct: 608 MINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVE 667 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 DV+K GDT+ VK+ + D +G++ S KV++Q+ Sbjct: 668 DVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699 >gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii OhILAs] gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii OhILAs] Length = 706 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/693 (45%), Positives = 459/693 (66%), Gaps = 5/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF V EI AGR L++E G++A+ S+G+ L YG+T VL +S ++G DFFPL+ Sbjct: 1 MFKVFKKEI--AGRVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLS 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ YA GKIPGG+++RE RP+EN IL SR+IDR IRPLF Y+N+ Q+I V+ Sbjct: 59 VDYEEKMYAAGKIPGGFIKREGRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D++ +P +V+M+ +S AL +S +PF+GP V ++G+ ++NP DE + SLDL VS Sbjct: 119 DIDCTPDIVAMLGSSIALSISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSSLDLVVS 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV+M+E AN+++E +L+AI+F H E K +I I ++A KE + + + ++ Sbjct: 179 GTKDAVMMIEAGANEVTEAQMLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEINE 238 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297 E E+ K + + EK R +I+ ++ ++YF ++ N +I ++ + Sbjct: 239 DFETEVRAYAKTRISEAIRTVEKLERNAKIELANEETINYFYEKYQEELNLKQIHTILDS 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I + R ++L K R D R + +R IS +V LL +THGS LF RG TQ + +VTLG Sbjct: 299 ILKEETRNLILYDKKRPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAI 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + +M HYNF P + GE + +P RREIGHG LA RA+ P++P Sbjct: 359 GDVQILDGLGKEESKRYMHHYNFPPYSVGETKMLRSPGRREIGHGALAERALEPMIPSQD 418 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPY +R+VSE+ S+GSSS A+VCGS+L+L+DAGVP+ VAGIAMGLVK+GD ILS Sbjct: 419 DFPYAIRVVSEVLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAILS 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDHLG MDFKVAGT GITA+QMD+KI GI E I+ AL+QA+ GRL+IL++M + Sbjct: 479 DIQGMEDHLGDMDFKVAGTAKGITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S R +L + PR+ M I PD+IR VIG GGK I I+E TG K++I++DGT+ IA+ Sbjct: 539 AISSPRPELSPYAPRMLKMKIHPDKIREVIGSGGKTINKIIEDTGVKIDIENDGTIFIAA 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + E A +I +I PE+ I+KG+V+K+M+FGAFV ++GLVHIS L+ ERV Sbjct: 599 QTQEAGELALSIINNIVREPEIGDIFKGKVIKLMNFGAFVEILPGKEGLVHISNLAHERV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DV+ GD + VK+++ D +GK+ LS K + Sbjct: 659 NKVEDVLAVGDEIDVKVIEIDQQGKVSLSRKAL 691 >gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 712 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 320/693 (46%), Positives = 464/693 (66%), Gaps = 12/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+++ G+ LK+ETG +A+Q+ G+VL Y +TVVL+ + KD DFFPLTV Y+E+ Sbjct: 7 ELDFCGKNLKVETGELAKQAGGSVLVRYEDTVVLSAATASKKAKD-IDFFPLTVTYEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+LRRE RP+E+ L SR+IDR+IRPLF++ ++NE QV+ V+ D +S+P Sbjct: 66 YSVGKIPGGFLRREGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M AS +LM+S +PFEGP+ G V YI+ +V+NP L+E + S + L V+GT+DA+ Sbjct: 126 MAAMFGASLSLMVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKMHLIVAGTKDAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++SE+++L+A++FGH K + ++A+ AKE + + + S++ EE+ Sbjct: 186 MVEAGAEEVSEELMLEAMLFGHEWIKRLCAFQIEIAQEVAKEKMEVTLYEVPSEIVEEVE 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298 ++ +DLR + I EK R ID+L++K V +F ++ S E E + V + Sbjct: 246 ALVGKDLREAVAIHEKLKRYGMIDELEEKAVLHFEAK-SYETESEKHKTVKYVKEVTHGM 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 A VR ++ +K+R DGR + VR ++ Q+ LL R HGS LF RG+TQ + V TLG Sbjct: 305 VADEVRRLISIEKIRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMA 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D LS F+ HYNF P + GE RMGAP RREIGHG L RA+ V+P + Sbjct: 365 DTQIIDDLSDVDSKRFLHHYNFPPYSVGETGRMGAPGRREIGHGALGERALSYVIPSEEE 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+V+E+ ES+GSSS A++C SLALM AGVP+ V+GIAMGLV+ GDD+ IL+D Sbjct: 425 FPYTIRLVAEVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDDYTILTD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT GITA+QMD+KI G+SE+I+ AL QAK GR ++ M +V Sbjct: 485 IQGMEDHFGDMDFKVAGTKKGITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDEV 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIAS 597 +SE R +GE+ P++ M I PD+IR+VIG GGK+I I+E K++I+DDG V I Sbjct: 545 ISEPRNFVGEYAPKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGRVVIYH 604 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A I+ A+ MI +I V V +IY +VV++ FGAFV+ D L+H+S++ RV Sbjct: 605 TDQASIDKAKAMIENIVRVAAVGEIYDAKVVRIEKFGAFVNLFQGTDALLHVSKMDHNRV 664 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K D+VK GD V VK+++ D++G++ +S K + Sbjct: 665 EKPEDIVKLGDIVKVKVMEIDEKGRVNVSRKAL 697 >gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius ATCC 35311] gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius ATCC 35311] Length = 713 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 308/706 (43%), Positives = 464/706 (65%), Gaps = 20/706 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MSEKQVFKTSWGGRPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGK+PGG+++RE RP+E+ L +R+IDR IRP+F++ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKVPGGFIKREGRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF GP+ G +V I+G+YVLNP +++ +Q +DL V+ Sbjct: 120 EQDCSPAMAAMLGSSLALTISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDIDLSVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++A+ MVE A ++SE +L A++FGH K ++ ++ + KE + I + Sbjct: 180 GTKEAINMVESGAEEVSESDMLGALLFGHAAIKELVAFQEEIRQAVGKEKMTIQ---LLQ 236 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-------- 287 ++ ++ + I D ++ + EK R + I +K+++ + +S + S Sbjct: 237 VDPDLKKGIYTDYYETMKRAVMTEEKLAREENIQSVKEEVRNNYSEKFSEQEYEAQLSTE 296 Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E+ + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG Sbjct: 297 EQLNNEVKQIVEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRG 356 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 TQA+ TL + Q +D L + F+ HYNF + G R G+P RREIGHG L Sbjct: 357 QTQALSACTLAPLGEHQIIDGLGIEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGAL 416 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 RA+ ++P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAM Sbjct: 417 GERALSQIIPSPEAFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAM 476 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GLV DG+++ IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL+QA Sbjct: 477 GLVSDGENYTILTDIQGLEDHLGDMDFKVAGTKQGITALQMDIKIEGITEQILKEALEQA 536 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R+ ILNE++ L+E R +L ++ P++E++ I P +I++VIG GG+ I GI+E+TG K Sbjct: 537 KKARMEILNELTSTLAEPRNELSQYAPKIEMVKIDPSKIKDVIGKGGETINGIIEETGVK 596 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++ID +G V IASS I+ A ++I +T +V ++Y G+VV++ FGAFV+ +D Sbjct: 597 IDIDQEGNVSIASSDDIMIKRAIKIIEDLTKDVKVGQVYLGKVVRIEKFGAFVNLIKGKD 656 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 LVHISQL+ ERV DVVK GD + VK+ + D +G+I S K + Sbjct: 657 ALVHISQLANERVKNVEDVVKVGDEILVKVTEIDKQGRINASRKAL 702 >gi|32490971|ref|NP_871225.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741772|sp|Q8D2Y0|PNP_WIGBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|25166177|dbj|BAC24368.1| pnp [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 705 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 318/697 (45%), Positives = 470/697 (67%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + ++ + +ETG IARQ+ AV+ +T V TVV D+ K GQ FFPLT Sbjct: 1 MLKATIQKFQYGKNIVTIETGMIARQATSAVMVRMDDTSVFVTVVADKKEKLGQKFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTY++G+ PGG+ RRE RP ENE+L+SR+IDRS+RPLF K + N+ Q+I VM Sbjct: 61 VNYQERTYSIGRFPGGFFRREGRPNENEVLVSRLIDRSVRPLFPKNFFNDIQIIATVMSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +VS++ ASAAL LSGLPF+ P+ +++ YI+ +Y+LNP E S LD+ VS Sbjct: 121 NPQVNPDIVSIIGASAALSLSGLPFKCPIGSSRIGYIDNKYILNPTTSELIDSKLDMIVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G+ +AVLMVE +N L E +L+AI+FG+ + K VIE I KL K KE + D Sbjct: 181 GSSNAVLMVESSSNILQEKNILEAILFGNEQNKIVIENIDKLKKKFKKENL---EYDLKS 237 Query: 240 LEEEMSQMIKEDL-----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 L Q + EDL + S IPEK R ++I+++K +++ F + +++ E + + Sbjct: 238 LNNNDIQFVIEDLFFDRIKDSYKIPEKKKRLEKIENIKNDILNNFINNNNTNEEEILY-I 296 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 ++I+ K+VR ++ K R+DGR + VR++ +G+L RTHGSSLF RG+TQA+V TL Sbjct: 297 IQNIERKIVRNRIISGKPRIDGRTEDMVRNLDIHLGILPRTHGSSLFTRGETQALVTTTL 356 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT D Q +D L G + + F+ HYNF P GEV + +P RREIGHG+LA+R + V+P Sbjct: 357 GTERDAQNIDDLVGDKIDRFLFHYNFPPYCVGEVGIISSPKRREIGHGKLAKRGMLAVMP 416 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+RIVSEITES+GSSSMA+VCG+SL+LMDAGVPIS VAGIAMGL+K+ D F+ Sbjct: 417 DIDKFPYTIRIVSEITESNGSSSMASVCGASLSLMDAGVPISSSVAGIAMGLIKEKDKFV 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI GDED+LG MDFKV GT G+TA+QMD+KI GI+ I+ ++L +AK R++ILNE Sbjct: 477 VLTDILGDEDYLGDMDFKVMGTREGVTALQMDIKIEGITSEILQVSLDKAKNARINILNE 536 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M KV+ + + ++ F PR+ + I P++I++VIG GG VIR + E+T + + I+DDGTVK Sbjct: 537 MDKVIKKPKNEISIFAPRIYKIKINPEKIKDVIGKGGSVIRMLTEKTKSSIEIEDDGTVK 596 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + S+ + + A + I+ IT ++NKIY ++ ++ +FG F ++GL+H+S++ Sbjct: 597 VISTDIKNAQCALKKIKDITHEIKINKIYVAKITRISEFGIFACLINNKEGLIHVSKIPY 656 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 ++ + ++ K G + VK+++ D G+I+LS D Sbjct: 657 KKFSDINNNFKIGQIISVKVIEIDRYGRIRLSFTGTD 693 >gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter italicus Ab9] gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter italicus Ab9] Length = 700 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 311/687 (45%), Positives = 465/687 (67%), Gaps = 5/687 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++TG++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF Y+N+ Q+I ++ D + Sbjct: 64 ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDV 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++GQ+V+NP D+ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +L+AI++ H K ++E I ++ + K +++ D +LE Sbjct: 184 AIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVEEVGVPKSEVILHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ + + + PEK R +D ++++++ YF E+ N +I V +I + Sbjct: 243 EKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIMKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++K+R+DGR + +R I +VG+L RTHGS++F RG TQ + V TLG D Q Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD +L+DI G Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+ E Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + PRV M + P++IR++IG GK I I+ +TG K++I++DG + I +S L Sbjct: 542 PRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASDLK 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A++MI +IT V +IY G+V+++ FGAFV ++GLVHIS+LS +RV K Sbjct: 602 SGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVVK GD + VK+ D D +G+I LS K Sbjct: 662 DVVKVGDDILVKVTDIDKQGRISLSRK 688 >gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC 43541] gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC 43541] Length = 700 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/691 (45%), Positives = 461/691 (66%), Gaps = 7/691 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + EIE GR L +E G++A+Q++GAVL YG+TVVL T + ++G DFFPLTV+Y Sbjct: 12 MQSFEIELGGRKLVIEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDY 71 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RE RP+ + IL +R+IDR IRPLF ++N+ Q++ V+ + + Sbjct: 72 EEKMYAVGKIPGGFIKREGRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 131 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---LDLFVSG 180 + P + +M+ AS AL +S +PF GP+ G +V YI+G++++NP E Q S L+L V+G Sbjct: 132 NPPEIAAMIGASCALTVSDIPFMGPIAGVRVGYIDGEFIINP--TEQQRSVSELNLAVAG 189 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239 + DAV+MVE AN+LSE+VVLDAI+FGH E + ++E + C KE I+ S+ Sbjct: 190 SYDAVMMVEAGANELSEEVVLDAILFGHAEIRRLVEFQQNIRNTCGKEKIIPSIFTLSEE 249 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 LE ++ +E L + +K R I +K + + YF E+ + EI + I+ Sbjct: 250 LESKVRSYAEERLDAATRNSDKLARDADIAGIKAEAIEYFVEEYPDAAK-EIAQILYKIE 308 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VR ++ +K+R DGR + +R +S +VG+L R HGS LF RG TQ + V TLG+ D Sbjct: 309 KGIVRHMITHEKIRPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVLTVTTLGSIGD 368 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ +D L ++ YNF + GE M +P RREIGHG LA RA+ P++P +F Sbjct: 369 EQIIDGLGSETTKHYLHQYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEEF 428 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEI ES+GSSSM ++CGS+L+LM AGVPI +PV+GIAMGLV+DGD++ IL+DI Sbjct: 429 PYTIRLVSEILESNGSSSMGSICGSTLSLMCAGVPIKRPVSGIAMGLVRDGDNYSILTDI 488 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKVAGT GITA+QMD+KI GI+ +I+ AL QAK+GR IL +M + + Sbjct: 489 QGMEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILAAALAQAKQGRAFILGKMLECI 548 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + +L + PRVE + I D+IR+VIG GGKV+R I+++TG ++I +DG + I S + Sbjct: 549 DKPAEELSPYAPRVETITIDVDKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFITSPN 608 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ AR+MI I EV ++Y G+V + + FGAFV ++GL HISQL+ RV Sbjct: 609 TEAMDRARKMIEDIVREVEVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVES 668 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+++ D++G+I +S K + Sbjct: 669 VEDVVKIGDQLEVKVIEIDEKGRINVSHKAL 699 >gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis FRI909] Length = 701 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/695 (45%), Positives = 465/695 (66%), Gaps = 17/695 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+YV+NP + D++ LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246 E A++++E +L+AI FGH E K ++ ++ +PI ++F +E E++ + Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHI--QPI---KQEFVPVERDEDLVE 244 Query: 247 MIK---ED--LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298 +K ED L+ + +K R + +D LK+++V +F E NE E+ ++ D+ Sbjct: 245 KVKRLTEDKGLKETVLTFDKQQRDENLDVLKEEVVGHFLDEEDPENETLVKEVYAILNDL 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG Sbjct: 305 IKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T Sbjct: 365 DYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQD 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+D Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M Sbjct: 485 IQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHT 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L + P+V M+I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 545 IEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A I A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ Sbjct: 605 DQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERIN 664 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K DV+K GDT+ VK+ + D +G++ S KV++Q+ Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699 >gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] Length = 704 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 311/687 (45%), Positives = 454/687 (66%), Gaps = 6/687 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGRPL +E G++A+Q++GAVL YG+T VL+T +S K DFFPLTVNY+ER YA Sbjct: 10 EWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLTVNYEERLYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE RP+E IL SR+IDR IRP+F ++NE QVI VM +D + + + Sbjct: 69 AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +MV +S AL +S +PF+GP+ G QV YING++++NP +++ +Q ++ L V+G +DA+ MV Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTIHLSVAGNKDAINMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246 E A ++ E+V+L+AI+FGH E K +I ++ KE P+ + D ++ ++ Sbjct: 189 EAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEID-EAIQADIKA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + D+ + EK+ R + I +K +++ SY E ++ ++ + + VR Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDKMVKDEVRR 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 + + K+R DGR + +R +S++ G+LQRTHGS LF RG TQA+ + TLG D Q +D Sbjct: 308 QITEDKIRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE + P RREIGHG L RA+ V+P + FPYT+R Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRC 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVP+ PVAGIAMGL+K G+ + IL+DI G EDH Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S NI+ AL QAK GR+HIL M L+E R Q Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLAEPRTQ 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L EF P++ I+ I PD+IR+VIG GGK I I+E+TG K++ + DGT+ I+S++ Sbjct: 548 LSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSANEEMNAR 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V + Y V ++ FGAF +DGL+HIS++ ER + DV+K Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 GD + VK+++ D +G++ LS KVV Q Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVLQ 694 >gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] Length = 711 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 304/684 (44%), Positives = 453/684 (66%), Gaps = 17/684 (2%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 +ETG+ A+Q+ G+V+ G+T+VL T +S + G DF PLT YQE+TY+ GKIPG + Sbjct: 17 IETGKWAKQASGSVVVRCGDTMVLVTATASKSPRVGMDFLPLTCEYQEKTYSAGKIPGNF 76 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 RRE+RP+ +E+L++R++DR RPLF K ++ ETQ+I NV+ D ++ V++M +S A Sbjct: 77 FRREARPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAADVLAMTGSSCA 136 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196 L +S +P++GPV +V + G++V P +E +Q +D+ VS ++DA++MVE ++ Sbjct: 137 LHISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDIDMIVSASRDAIVMVEGGMREVP 196 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLEEEMSQMIKED 251 E V++DA++F H +P+I+ KL KE ++ F +K++E + ++E Sbjct: 197 EQVLIDALLFAHEAVQPLIDLQEKLRAAVGKEKRPFEAPSFDQDLLAKVQESAWERVREA 256 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-------EIVSVFEDIQAKVVR 304 V EK+ R + D+++ +V + E E+ +E ++ + R Sbjct: 257 FEVR----EKHSRSAALSDVRRALVGELCGAQENATEAVYAGREDEVSEAYEKVKKRFAR 312 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 LD K R+DGR + +R IS +VG+L HGS+LF RG+TQA+V T+GTR DEQ +D Sbjct: 313 LNTLDSKHRIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLD 372 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G + F +HYNF P TGE + + SRRE+GHG LA R+I V+P+ FPYT+R Sbjct: 373 TLLGGMQKPFFLHYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIAQVMPEREDFPYTVR 432 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEI ES+GSSSMA+VCG+SL+LMDAGVP+ PVAGIAMGL+ +G+ + ILSDI GDED Sbjct: 433 VVSEILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAILSDILGDED 492 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H+G MDFKV GT G+ A+QMD+K+ G++ +I+V AL+QA+RGR+HIL++M++ L R Sbjct: 493 HMGDMDFKVTGTARGVCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEALQTPRE 552 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 L PR+ + PD+IR++IG GGK IR I EQTGAK+++ D G V IASS ++ Sbjct: 553 DLSPNAPRIVTETVKPDKIRDIIGPGGKTIRAIAEQTGAKIDVSDAGVVSIASSDSRSLQ 612 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A ++IR +T PEV + Y G V ++++FGAFV DGLVHIS+LS+ERV + DV+ Sbjct: 613 QAIDIIRGLTMEPEVGQFYGGVVKRIVEFGAFVEILPGTDGLVHISELSSERVRRVEDVI 672 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 +EG+ + VK + D GKI+LS+K Sbjct: 673 QEGEEIVVKCISVDRDGKIRLSLK 696 >gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 739 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 318/689 (46%), Positives = 464/689 (67%), Gaps = 10/689 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + ETG++A Q+ G+VL G+TVVL T V + +++ FFPLTVNYQE +YA GKIPG Sbjct: 19 INFETGKMANQAHGSVLVQSGDTVVLVTAVT-QPMENNPGFFPLTVNYQEMSYAAGKIPG 77 Query: 76 GYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 Y RRE RP+E E L+SR+IDRSIRPLF + + +E QV+ V+ D + P ++++ A Sbjct: 78 SYFRREIGRPSERETLVSRLIDRSIRPLFPETFNDEVQVMATVLSADPVNDPDILAISGA 137 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193 SAAL +S +PF GP+ GA+V YI+ +++LNP L DQ L L V+ T++ V+MVE A+ Sbjct: 138 SAALHMSKIPFMGPLAGARVGYIDDEFILNPSLKLLDQSDLSLMVASTRNGVVMVEGVAD 197 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS---KDFSKLEEEMSQMIKE 250 + ED+V AI + + P++++ +L C +E + I + +D +LEE + +M Sbjct: 198 FVPEDIVARAIDWASQQVIPILDSQEELRSQCGREKMEIPAEPERDL-ELEEMVKEMAAG 256 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVVRTVML 308 DL + K R ++K+++ + + +E + +F+D++ ++R + Sbjct: 257 DLARALETQGKMHRKNAKSEVKERVQASLQEKLGPESERLDKFGGIFKDLEKSIMREKIS 316 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 +K+R+DGRD +TVR +S +VGLL RTHGS+LF RG+T A+ + TLG+ D Q++++LSG Sbjct: 317 SEKIRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLGSSTDIQHIETLSG 376 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 FM+HYNF P GEV + PSRREIGHG LA RAI PVLP + FP+T+R+VSE Sbjct: 377 DSSKSFMLHYNFPPYCVGEVKFLRGPSRREIGHGVLAERAIQPVLPSSEDFPFTIRLVSE 436 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 I +S+GSSSMATVCG +LALMDAG+P+ +PVAGIAMGL+++ D++++L+DI GDEDHLG Sbjct: 437 IMDSNGSSSMATVCGGTLALMDAGIPVKEPVAGIAMGLIRENDEYLVLTDILGDEDHLGD 496 Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFKVAG+ GITA+QMD+KI GIS IM AL QA R HIL++M +V+ E R +L Sbjct: 497 MDFKVAGSYDGITAVQMDIKISGISGEIMHQALDQALEARRHILDQMKQVIDEPRKELSP 556 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P++E++ + ++I++VIG GK I+ I +TG+ ++I+D G + I + S ++ +E Sbjct: 557 FAPKMEVIHVDTNKIKDVIGPSGKHIKAITAETGSSIDIEDSGKISIFAPSEEILQKTKE 616 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 MI PE+ K Y+G V +++DFGA V DGLVHISQL T RV K SDVV GD Sbjct: 617 MILFYNQKPELGKDYEGVVTRLLDFGAVVEILPGLDGLVHISQLDTARVEKVSDVVNIGD 676 Query: 669 TVWVKLLDFDDRGKIKLS-MKVVDQNTGK 696 + VK+++ DDRGK++LS M V+ + GK Sbjct: 677 KIKVKVIEIDDRGKVRLSRMAVLMEEQGK 705 >gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua Clip11262] gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262] Length = 723 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 317/702 (45%), Positives = 456/702 (64%), Gaps = 6/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295 +LE E+ + ++ + EK R I+++K++++ SY + E + E GE+ + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +SE R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV I Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701 >gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4] gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4] Length = 736 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/699 (45%), Positives = 459/699 (65%), Gaps = 19/699 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ AGRPL LE GR+ARQ+ AVLA YG+TVVL T ++G DFFPL V+Y+ER Sbjct: 10 EMILAGRPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVDYEERH 69 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+LRRE +P E +L +R+IDRSIRPLF K +N+ V+ ++ D +P Sbjct: 70 YAVGKIPGGFLRREGKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQNCAPE 129 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186 + +M+ ASAAL LS +PF GP+ G V ++G+ VLNP +++++ SL L V+GT++AV+ Sbjct: 130 ITAMIGASAALTLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSLLHLVVAGTKEAVV 189 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------MCAKEPIVIDSKDFSKL 240 MVE A ++ ED V++AI FGH K + I L + + + + + +L Sbjct: 190 MVECGAREVPEDKVVEAIEFGHQTVKEIAAFIETLREEALALGLASPKKEFEFPEPPEEL 249 Query: 241 EEEMSQMIKEDLR-----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 E + + + LR + +K R ++LK ++V+ ++ E I + Sbjct: 250 REAVKAVAEPALREAYRWYASARLDKKARESHTENLKNELVAKLLEQYPE-EEATIKELI 308 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 +I+ +VVR ++ +++R DGR + +R +S +VGLL RTHGS+LF RG TQ + VVTLG Sbjct: 309 AEIERRVVRELIAKERIRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLG 368 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 DEQ +D L + FM HYNF P +TGEV + +P RREIGHG L RA+ V+P Sbjct: 369 AVGDEQILDDLDLEESKRFMHHYNFPPFSTGEVRPIRSPGRREIGHGALVERALEAVIPD 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+R+VSE+ ES+GS+SMA+VC SSLALMDAGVPI PVAGIAMGL+K+ D+FI+ Sbjct: 429 EDAFPYTIRVVSEVLESNGSTSMASVCASSLALMDAGVPIKAPVAGIAMGLIKEEDEFIV 488 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDHLG MDFKVAGT++GITA+QMD+KI G+++ I+ AL QA+ RL+IL M Sbjct: 489 LTDIQGLEDHLGDMDFKVAGTEAGITALQMDIKIAGVTKEILATALAQAREARLYILEVM 548 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + L R +L + PRV + I PD+IR+VIG GGK IR I+E TG +++++DDG + I Sbjct: 549 RRALPAPRPELSPYAPRVLSLVINPDKIRDVIGPGGKTIRKIIELTGVEIDVEDDGRIYI 608 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649 + S + + A E+I+++T V ++Y G+V +V DFG FV ++GLVHI Sbjct: 609 TAPSESAGQQALEIIKNLTAEVAVGQVYLGRVTRVTDFGCFVEIIPGVLGLPGKEGLVHI 668 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SQ++ + + +VVKEGD V VK++ +D +G+++LS K Sbjct: 669 SQMAPLKGKRIEEVVKEGDQVLVKVIGYDSQGRLRLSQK 707 >gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] Length = 697 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 323/687 (47%), Positives = 456/687 (66%), Gaps = 12/687 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE +GR + +ETGRIA+Q++G+V+ T GETVVL T V +++G DF PLTV YQE +Y Sbjct: 6 IEISGRNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSY 65 Query: 69 AVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 A G+IPG + RR+ RP E E LISR+IDR +RPLF Y ETQVI V+ D E+ Sbjct: 66 AGGQIPGNFFRRDMGRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEAD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +++M+ ASAAL +S +PF+GP+ G +V I+G++V NP + + + S ++L V+G +D ++ Sbjct: 126 MLAMLGASAALEISDIPFQGPIAGVKVGRIDGEFVANPTISQQEESDINLIVAGNRDGIV 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKLE 241 MVE + +SE ++DAI +GH +P+++ L K K V D+ +K+E Sbjct: 186 MVEGGSRFVSESDMIDAIFYGHQAIQPMLDVQESLKKEVGKPKRSIPDEVADASLKTKVE 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E ++KE L +S +K R + D + ++V E + EI F ++ K Sbjct: 246 EIGEPLLKEVLCIS----DKMDRQAKRRDAQNQVVDALLEEFEG-QKSEIKDFFHSLEKK 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR+++LD+ R+DGR VR I VGLL R HGS+LF RG+TQA+V+ TLGT D Q Sbjct: 301 MVRSMILDEGKRIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++S+ G + F++HYNF P + GE R+ P RREIGHG LARRA+ PVLP F Y Sbjct: 361 RIESIFGEELRSFILHYNFPPYSVGEAKRLSGPGRREIGHGALARRALLPVLPSEEDFQY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +R+VSEI ES+GSSSMA+VCG L+LMDAGVPI VAG+AMGLV +GD+ ++L+DI G Sbjct: 421 CIRVVSEILESNGSSSMASVCGGCLSLMDAGVPIKDLVAGVAMGLVAEGDNVVVLTDILG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDH G MDFKV GT GITA+QMD+KI ++ IM AL+QAK GRLHIL M + +++ Sbjct: 481 DEDHYGDMDFKVTGTSEGITALQMDIKIERLTREIMEQALEQAKEGRLHILGCMKETIAQ 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ E+ P + + I P+++R +IG GGK IR I +GA++++DD+G V I+S Sbjct: 541 PRNEVSEYAPIITNVKISPEKVRILIGPGGKTIREICNVSGARIDVDDEGVVTISSPDKE 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +AA +M++ I E K+Y+G+VVK+MDFGAFV DGLVHISQL+ ERV K + Sbjct: 601 CSDAAMKMVKEIVQEAEEGKLYQGKVVKIMDFGAFVEIFPGTDGLVHISQLAPERVNKVT 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV+ EGD V VK+L+ G+I+LS K Sbjct: 661 DVLNEGDEVLVKVLEVGKDGRIRLSRK 687 >gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 806 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 328/692 (47%), Positives = 461/692 (66%), Gaps = 11/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TVE+ G+ L ETGR+A+Q+ GA L T GE+VVLAT V K+G DFFPLTV+Y+E Sbjct: 6 TVEL-TGGKKLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLTVDYRE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 YA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQVI V D E+ Sbjct: 65 YAYAGGRIPGGFIKREGRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSADKEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184 P +V + AASAAL LS +PF GPV +V Y+NG+YV+NP E + S+++ V GT D Sbjct: 125 PDIVGINAASAALALSDIPFAGPVGAVRVGYVNGEYVINPSYAERRDSSINITVVGTMDG 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK----- 239 ++M+E + ++ E+VVL AI FGH E K ++ AI++LA K + + +F + Sbjct: 185 IVMIESGSAEVPEEVVLGAIDFGHTEIKKIVAAINELAAKAGKTKRAVTAPEFDEAYFET 244 Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L+ ++ + + L E Y KQI D + + E++ + ++ +E + Sbjct: 245 LKNKIGARLADALDTKAHPKTESYALVKQIKDELAAEIP--ADENAGAAKKKLAHYYELL 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K+ R + +VR D R + +R I+ +VG+L RTHGS+LF RG+TQA+V TLGT + Sbjct: 303 REKIFREQVTKDRVRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTND 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +++ G Q+ FM+HYNF P + GEV RM RRE+GHG LA RAI VLP + Sbjct: 363 DSQRLETFEGEQKKRFMLHYNFPPFSVGEVGRMTGVGRREVGHGALAERAISAVLPGEDE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 PY LR+VS+I ES+GSSSMA+VCG+SLALMDAG+P+ VAG+AMGLVK+GD++ IL+D Sbjct: 423 SPYALRVVSDILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAILTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I+G EDH G MDFKVAGT GITA+QMD+KI GI+ IM A++QA+RGR+ +L++M ++ Sbjct: 483 IAGAEDHYGDMDFKVAGTRKGITALQMDIKISGITGQIMREAMEQARRGRMFLLDKMDEI 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L+ R + + P++ + IP D+IR++IG GGK IRGI+E T K+++DD G V IASS Sbjct: 543 LAAPREEKSKHAPQIRTVQIPTDKIRDLIGPGGKTIRGIIEATQVKIDVDDTGRVNIASS 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++ A MI +T VPEV K Y G+VV++ +FGAFV DGL+HIS+++ RV Sbjct: 603 DEEGLKKALAMINDLTAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHISEIAEHRVK 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + D + EGD V VK+L + +IKLS K V Sbjct: 663 EVKDELHEGDQVMVKVLGVEGN-RIKLSRKAV 693 >gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus oleovorans Hxd3] gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans Hxd3] Length = 721 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/689 (46%), Positives = 441/689 (64%), Gaps = 4/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E G+P ++TGR+A+Q+ GA L YGET+VL TV K+ DF PL+V YQ Sbjct: 4 HVFEATVNGKPFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQ 63 Query: 65 ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E+ Y+ G+IPG Y RRE RP+E E L R+ DR IRPLF Y ETQVI V+ D E Sbjct: 64 EKIYSAGRIPGNYFRREIGRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRE 123 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P V+S+V ASAAL +S LPF+GP+ +V +NG V NP E D +++ V+G++ Sbjct: 124 NDPDVLSIVGASAALTISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDINIVVAGSR 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241 V+MVE +N +SE +L+AI FGHN P+I+ ++ C K + +++ + ++LE Sbjct: 184 SGVVMVEGGSNVVSEAEMLEAIFFGHNALLPLIDIQDQMRNACGKPKRVIVPPEKDTELE 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +++++ + + + PEK R + +++ + + EI +F D+ K Sbjct: 244 TRIAELVGDAVAQAVTEPEKDARKSALSKVRENLFQGLGEAFADRKR-EIKGLFSDLVKK 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V R ++L++ R+DGR + VR IS +VG+L RTHGS+LF RG+TQ + V+TLG+ DEQ Sbjct: 303 VCRDIVLNQGRRIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 V++L G + FM+HYNF P GEV R+ PSRR+IGHG LA R I VLP F Y Sbjct: 363 RVETLFGDETRPFMLHYNFPPFCVGEVKRVMGPSRRDIGHGNLAHRGISYVLPDKETFDY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GSSSM TVC LALMD GVPI PV+GIAMGLV DGD +LSDI G Sbjct: 423 TIRLVSEVLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAVLSDILG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDH G MDFKV GT+ GITA+QMD+KI +S I+ AL QAK GR+HIL +M + LS Sbjct: 483 DEDHFGDMDFKVTGTEKGITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEALSH 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + + P++ I+ I PD+IR +IG GGKVIR + + ++ +DD GTVKIA+S+ Sbjct: 543 YRDDISPYAPKIYIVKIHPDKIREIIGPGGKVIRELQAMSNTRIEVDDSGTVKIAASTEE 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A + + I VPE +IY+G+VV++ DFGAF+ DGL HIS+L V + Sbjct: 603 EARIAIKAVEDIGRVPEPGEIYEGEVVRITDFGAFIQIKNGTDGLCHISELEHHHVKSVT 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD V VK+L+ GKI+LS K + Sbjct: 663 DVVKMGDKVRVKVLEVSPEGKIRLSRKAL 691 >gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 790 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 325/697 (46%), Positives = 461/697 (66%), Gaps = 12/697 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H IE AGR L +ETGR+A + GAV YG+T+VL TVV +R ++G DFFPLTV+Y Sbjct: 11 IHERTIEVAGRRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDY 70 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPGG+++RE RPTE IL +R+ DR IRPLF K YK E QVI V+ D E Sbjct: 71 EEKMYAAGKIPGGFIKREGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQE 130 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSG 180 ++P V+S++ ASAALMLS +P+ GPV ++ I+G+ V+NP E Q LD+ V+G Sbjct: 131 NAPDVLSIIGASAALMLSPIPWAGPVGAVRIGDIDGELVVNP--TEHQLIDSKLDMVVAG 188 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239 T DAV+MVE EA+++SED L+A++ H+E K ++ +L ++ KE ++ ++ Sbjct: 189 TADAVMMVEGEADEISEDRFLEAVLLAHDEIKRIVAMQHELRELAGKEKWEFTPPEENTE 248 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVF 295 L++++ + I + L + F P+K R D+LK+ ++++F+ E E+ +F Sbjct: 249 LKQQIEEYIGDRLVSAVFNPDKEQRLAATDELKQDVIAHFTEAPEGEEPVATVREVSEIF 308 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + +VR +L++ R DGR + +R+I + G+L R HGS++F RG TQA+ VVTLG Sbjct: 309 DGLVKGLVRRTILERSERPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLG 368 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T +EQ +D L + ++ HYNF P + GEV R+ PSRR+IGHG LA R++ VLP Sbjct: 369 TTSEEQLLDGLGIEESKRYLHHYNFPPFSVGEVRRLRGPSRRDIGHGALAERSLLAVLPD 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--F 473 FPYT+R+VSEI S+GS+SMA+VCGSSLALMDAGVPI PVAG+AMGL+ D + + Sbjct: 429 EDVFPYTMRVVSEIVSSNGSTSMASVCGSSLALMDAGVPIRAPVAGVAMGLITDPETGRY 488 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED LG MDFKVAGT GIT +QMD+K+ GI+ IM AL+QA+RGRL+IL+ Sbjct: 489 QILTDIQGIEDALGDMDFKVAGTAEGITGIQMDIKVMGITPEIMREALEQARRGRLYILD 548 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M+ VL++ R ++ + PR+ + I PDQI VIG GGKVIRGI E TGAK++I+DDGTV Sbjct: 549 KMNAVLAQPRPEMSPYAPRIYRIQIRPDQIGEVIGPGGKVIRGIQEATGAKIDIEDDGTV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I++ + A + I +T VPEV I+ G+V ++ G FV +DG +HIS+L Sbjct: 609 FISAVNEESARKAVDTIERMTKVPEVGDIFFGRVKTIIPSGCFVEILPGKDGFLHISELE 668 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV DVV+ G + V + GKI LS K + Sbjct: 669 PYRVNSVEDVVQVGQELNVVVTGIRPDGKINLSRKAL 705 >gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] Length = 699 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 311/687 (45%), Positives = 458/687 (66%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G YV+NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E K ++ ++ K+ + +D + +E+ + Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEALVEKVKAL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303 ++ L+ + +K R + +D LK+++V++F E NE E+ ++ D+ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDHPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 KELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ K DV Sbjct: 610 DRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GD++ VK+ + D +G++ S K + Sbjct: 670 LNIGDSIEVKITEIDKQGRVNASHKAL 696 >gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea psychrophila LSv54] gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea psychrophila LSv54] Length = 692 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 327/693 (47%), Positives = 467/693 (67%), Gaps = 6/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + VE + G+ + +ETG++A+Q+ G+++ + G TVVL TVV ++ DF PLT Sbjct: 1 MF--NKVEADIDGKLISIETGKLAKQASGSIVISCGGTVVLVTVVGAKTSNPNVDFLPLT 58 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 + YQE+ AVG++PG Y RRE RP++ E+L R+IDR +RPLF + Y++ETQVI V+ Sbjct: 59 IEYQEKFSAVGRVPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIATVLS 118 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D +SP V+++ ASAAL +S +PF GPV G ++ YI+G+YVLNP E + S+DL V Sbjct: 119 ADQVNSPDVLALTGASAALSISHIPFAGPVAGGRIAYIDGKYVLNPTFAELESSSMDLMV 178 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 + T++A++MVE +A++LSED +L AI F +P+I +L + E IV++S Sbjct: 179 ACTRNAIVMVEGKADELSEDEILGAIFFAFENLQPLINLQDELQRANGLEKIVVESPVID 238 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+ ++ ++ ++ +K R K DDLKK++V+ +E EI S+ D Sbjct: 239 AELKAKVVEIAAAGMQKVYTTVDKLERGKVYDDLKKEVVAQLDTEEG-LRASEISSLLSD 297 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + +R ++ VR+ GR + +RDIS++ L +THGS+LF RG+TQA+V TLG+ Sbjct: 298 FKKTYLREKTVNTGVRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSE 357 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D+Q V++L+G FM+HYNF P GE + PSRR+IGHG LA R + VLP Sbjct: 358 RDKQRVETLNGETSRRFMLHYNFPPYCVGEARFLRGPSRRDIGHGTLATRGLEAVLPSEE 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPY +R+VSEI ES+GSSSMA+VCG S+A+MDAGVP+ +PV+GIAMGL+K+G+ ILS Sbjct: 418 DFPYAIRVVSEILESNGSSSMASVCGGSMAMMDAGVPLKRPVSGIAMGLIKEGEGVAILS 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKV GT GITA+QMD+KI G+S +IM AL QAKRGR+HIL EMSK Sbjct: 478 DILGDEDHLGDMDFKVVGTCDGITALQMDIKIDGVSRDIMSNALDQAKRGRMHILEEMSK 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E+R ++ E P+ I I D+IR++IG GGK+I+ + Q AK+ +DD G VK+ Sbjct: 538 GIAEARAEVVEHAPKYFIHKISQDKIRDIIGPGGKIIKELSAQYDAKIEVDDSGLVKMFV 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ A EA E ++SIT EV +Y G+V + DFGAFV DGLVHIS+L+ ERV Sbjct: 598 ANGALAEALVERVKSITAEVEVGAVYTGKVKTIKDFGAFVEILPGTDGLVHISELALERV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DVV EGDT+ VK+LD D+RG+I+LS K + Sbjct: 658 KDVTDVVNEGDTIEVKVLDVDNRGRIRLSRKAL 690 >gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] Length = 799 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 320/693 (46%), Positives = 457/693 (65%), Gaps = 15/693 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TVE+ G+ + ETGRIA+Q+ GA + G+ V+LAT V K+G DFFPLTV Y+E Sbjct: 6 TVEL-AGGKRITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVEYRE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 Y G+IPGG+++RE RP+E EIL R+IDR RPLF Y+NETQVI V D E+ Sbjct: 65 TAYGGGRIPGGFIKREGRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADKEND 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDA 184 P V+++ AAS A+ LS LPF+GP+ +V I+G +++NP E + SL ++ V+GT+D Sbjct: 125 PDVIAINAASCAISLSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLINIIVAGTKDG 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSK 239 ++MVE A ++ ED V+DAI FGH + K + I +L K P+ ID ++ Sbjct: 185 IVMVESGAKEIPEDKVIDAIEFGHEQVKLICAGIDELVAKAGKAKRIVNPVEIDDAFYND 244 Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQI-DDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L+ ++ + + L + + Y + K+I D+LKK + E + ++ +E Sbjct: 245 LKSKVYDRVADALDTQKYAKIDSYAKIKEIKDELKKAL-----PEGDAAASKKLSKYYEL 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ ++ R + ++R D R + +R I +VG+L RTHGS+LF RG+TQA+V TLGT Sbjct: 300 LREEIFRNQVTKDRIRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTG 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 +D Q ++S G Q+ FM+HYNF P + GEV RM SRRE+GHG LA RAI VLP A Sbjct: 360 DDAQRMESYEGEQKKRFMLHYNFPPYSVGEVGRMTGTSRREVGHGALAYRAIEAVLPPEA 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 + PYTLR+VS+ITES+GSSSMA+VCG+SLALM AG+ + VAG+AMGLVK+GD + IL+ Sbjct: 420 ESPYTLRVVSDITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAILT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI+G EDH G MDFKVAGT +GITAMQMD+KI GI+ IM A++QA+ GRL +L++M Sbjct: 480 DIAGAEDHYGDMDFKVAGTRNGITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMDA 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V++ + + + P++ + IP D+IR++IG GGK+IRGIVE T K+++DD G V IAS Sbjct: 540 VIASANEEKSRYAPQIRTLQIPTDKIRDLIGPGGKIIRGIVEATQVKIDVDDTGRVSIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S + A +M+ IT VPE+ K Y G+VV++ +FGAFV DGL+H+S+++ RV Sbjct: 600 SDPDNLARAIQMVSDITAVPEIGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + D ++EGD V VK+L + +IKLS K V Sbjct: 660 KEVKDELREGDQVLVKVLAIEGN-RIKLSRKAV 691 >gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium gonidiaformans ATCC 25563] gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 707 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/709 (44%), Positives = 463/709 (65%), Gaps = 20/709 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T+E+E AGR LK+ TG+IARQS GAV+ YG+TV+L+TV + + G DFFPLT Sbjct: 1 MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RESRP+ + L++R+IDR IRP+F + + + ++ V Sbjct: 61 VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +++P + ++ +S AL +S +PF GPV G V YI+G+++LNP ++ +Q LDL V+ Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSLLDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + + K+C KE I + ++ Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286 + +S I+E+ L+ + K R + +D L+++++S F + Sbjct: 241 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIEKQYPDVAEEEIPEE 297 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + D+ K+VR +L KK R+DGR + +R + AQ+ +L HGS+LF RG+T Sbjct: 298 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q++ TLGT++DEQ VD+L F +HYNF P + GE RMGAP RRE+GHG LA Sbjct: 358 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R IL M+ +S S L PR++ + IP D+I +IG GGK I+GI+E+TG+ ++ Sbjct: 538 ARQQILEVMNAAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 596 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I S L +E ++ + E+N++Y+G+VV + FGAF+ ++GL Sbjct: 597 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694 +HIS++S ERVA DV+K GD VK++ D+ GKI LS K ++ +NT Sbjct: 657 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLEMENT 704 >gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Puerto Rico] Length = 805 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 333/703 (47%), Positives = 470/703 (66%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+DGAV+ YG T VL+TVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF + +E+ ++ N++ + Sbjct: 60 VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDESVIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177 D S P V+++ A+AAL +SG+PF P+ GA++ YI + Y+LNP +E + LD+F Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236 SGT+ +V+MVE EA++LSE+ +L A+ FGH C V++ I + A+ + +V D Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292 K+ ++S E V+ K R Q+D ++ + S +H + E E++ Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +VR +LD R+DGR + +R+I +V L+ R+HGS+LF RGDTQA+V+ Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT +DEQ VD G +R F++HYNF A GE + + P RREIGHG+LA RAIHPV Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+K+GD Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDED+LG MDFKVAGT GITA+QMDMKI GI +I+ +LQQAK GRL I+ Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M KV+ ESR + + PR+E M I ++I+NVIG GGK +R I E+TG K+ I DGT Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + S +E A+ MI I PEV K++ G + ++ +GAFV F G R GLVHIS++ Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E + SDV+ D V V ++ D+ ++LSM+ VDQ++G Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701 >gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2] gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2] Length = 706 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/692 (46%), Positives = 462/692 (66%), Gaps = 6/692 (0%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D H +EWAGR L +E G++A+Q++GAVL YG+TVVL+T + K+ DFFPLTVN Sbjct: 4 DKHVYSLEWAGRKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKN-LDFFPLTVN 62 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++N+ QV+ VM D Sbjct: 63 YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQ 122 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181 S + +M +S AL +S +PF GP+ G V I+G++++NP +D+ + S + L V+GT Sbjct: 123 NCSSEMAAMFGSSLALSVSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDISLVVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSK 239 +DA+ MVE A+++ E+ +L+AI+FGH E K +I ++A KE IV+ D Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIASEIGKEKMEIVLYQVD-QD 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDI 298 LE E+ + ++D+ + + EK+ R I +K+++ + + E + ++ +I + + I Sbjct: 242 LEAEVRGICEKDMIQAIQVQEKHAREAAIKAVKEQITAKYEGEEADDDKLKQIRQILDKI 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 VR ++ + KVR DGR + +R +S++VGLL RTHGS LF RG TQA+ + TLG Sbjct: 302 VKAEVRRLITEDKVRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALG 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + FM HYNF + GE + P RREIGHG L RA+ P++P Sbjct: 362 DVQILDGLGIEEEKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALEPIIPSEKD 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+K G+ + IL+D Sbjct: 422 FPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTD 481 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDHLG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK+GR+ IL+ M Sbjct: 482 IQGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMQILDSMLST 541 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L E+ P++ +M+I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S Sbjct: 542 IGQPRKELSEYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSV 601 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV Sbjct: 602 DEEMNQKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERVG 661 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DVV GD + VK+ + D +G++ LS K V Sbjct: 662 KVEDVVSIGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 697 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/687 (45%), Positives = 457/687 (66%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWA +PL +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF Y+++ Q+I V+ D SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP L++ + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQM 247 E A++++E +L+AI+FGH E K + ++ A + ++ I + L + ++QM Sbjct: 190 EAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTLIDSVTQM 249 Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303 K E+L + +K R +D +K+++++ F +E NE E+ ++ + V Sbjct: 250 TKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIINTLIKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R +S++VGLL R HGS LF RG TQA+ V+TLG+ + Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P FPYT+ Sbjct: 370 DGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDEKTFPYTV 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV + + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G+++ ++ AL+QA++GRL IL M + + + R Sbjct: 490 DALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+VEIM I P++IR+VIG GGK I I++ TG K++I+ DGTV I S+ I Sbjct: 550 KELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 AR I SI EV ++Y +V ++ FGAFV +D LVHISQ+S ER+ K DV Sbjct: 610 NQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GDT+ VK+ + D +G++ S KV+ Sbjct: 670 LNMGDTLKVKVTEIDKQGRVNASHKVL 696 >gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius ED99] Length = 697 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/687 (45%), Positives = 457/687 (66%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWA +PL +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF Y+++ Q+I V+ D SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP L++ + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQM 247 E A++++E +L+AI+FGH E K + ++ A + ++ I + L + ++QM Sbjct: 190 EAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTLIDSVTQM 249 Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303 K E+L + +K R +D +K+++++ F +E NE E+ ++ + V Sbjct: 250 TKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIINTLIKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R +S++VGLL R HGS LF RG TQA+ V+TLG+ + Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P FPYT+ Sbjct: 370 DGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDEKTFPYTV 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV + + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G+++ ++ AL+QA++GRL IL M + + + R Sbjct: 490 DALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+VEIM I P++IR+VIG GGK I I++ TG K++I+ DGTV I S+ I Sbjct: 550 KELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 AR I SI EV ++Y +V ++ FGAFV +D LVHISQ+S ER+ K DV Sbjct: 610 NQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GDT+ VK+ + D +G++ S KV+ Sbjct: 670 LNMGDTLKVKVTEIDKQGRVNASHKVL 696 >gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] Length = 714 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 313/688 (45%), Positives = 454/688 (65%), Gaps = 10/688 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + V IE GRP++ +TG++A+Q+DG+VL + G+T+VL T V ++ DFFPL V Y Sbjct: 3 ISEVAIEVGGRPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YA GKIPGG+++RE +PT+ EIL +R+ DRSIRP+F K ++N+ QVI V+ D E Sbjct: 63 RERAYAAGKIPGGFIKREGKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182 + P V+++ ASAAL +S +PFE PV +V ++G+ V+NP +E Q +DL VSGT+ Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVARVDGKLVINPSYEERQRADIDLIVSGTE 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241 DAV+MVE A ++ E+ VLDAI+ H E K +++A +L + K + + + Sbjct: 183 DAVVMVEGGAKEVPEEEVLDAILLAHEEIKKIVKAQDELRNLAGKPKYQFVAPELDPATK 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDI 298 E + Q + E + I +K+ R +++ +LK+ M+ + +H E F + Sbjct: 243 ERIKQWVFERIEPVITIKDKHERREKLRELKELMLIELNIPEEDHHLAKEA-----FNEA 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + VR ++L++ VR+DGR + +R IS +VGLL R HGS+LF RG TQA+V TLGT E Sbjct: 298 EKEFVRKMVLERGVRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPE 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q V+ L ++ FM+HYNF P GE+S M P RREIGHG LA RA+ PV+P + Sbjct: 358 EYQLVEGLMPEEQKRFMLHYNFPPFCVGEISPMRGPGRREIGHGALAERALAPVIPPEEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI VAGIAMGL+ +GD F++LSD Sbjct: 418 FPYVIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLIMEGDKFVVLSD 477 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKVAGT G+TA+QMD+K+ GIS ++ AL+QA+RGR+ IL++M V Sbjct: 478 ILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISREVLSKALEQARRGRMFILDKMDAV 537 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE R +L + PR+ I P++ R++IG GK I+ I+++ G K+ I +DGTV +++ Sbjct: 538 ISEPRKELSPYAPRIVTTKIDPEKTRDLIGPSGKTIKTIIDKAGVKITIKEDGTVLVSAP 597 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S A +MI +T EV Y G+V +V ++GAFV + GLVHIS+L E Sbjct: 598 SEEAAAQALKMIEDVTKDLEVGNTYLGKVTRVENYGAFVELAPGKVGLVHISKLPPELRE 657 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + +K D + VK+++FD G+ KLS Sbjct: 658 NIFEKIKVSDLIPVKIVEFDQFGRPKLS 685 >gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus sphaericus C3-41] gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus sphaericus C3-41] Length = 704 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 311/687 (45%), Positives = 454/687 (66%), Gaps = 6/687 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGRPL +E G++A+Q++GAVL YG+T VL+T +S K DFFPLTVNY+ER YA Sbjct: 10 EWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLTVNYEERLYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE RP+E IL SR+IDR IRP+F ++NE QVI VM +D + + + Sbjct: 69 AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++ +Q ++ L V+G +DA+ MV Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTIHLSVAGNKDAINMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246 E A ++ E+V+L+AI+FGH E K +I ++ KE P+ + D ++ ++ Sbjct: 189 EAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEID-EAIQADIKA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + D+ + EK+ R + I +K +++ SY E ++ ++ + + VR Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDKMVKDEVRR 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 + + K+R DGR + +R +S++ GLLQRTHGS LF RG TQA+ + TLG D Q +D Sbjct: 308 QITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE + P RREIGHG L RA+ V+P + FPYT+R Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRC 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVP+ PVAGIAMGL+K G+ + IL+DI G EDH Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S NI+ AL QAK GR+HIL M L+E R Q Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLAEPRKQ 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L EF P++ I+ I PD+IR+VIG GGK I I+E+TG K++ + DGT+ I+S++ Sbjct: 548 LSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSANEEMNAR 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V + Y V ++ FGAF +DGL+HIS++ ER + DV+K Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 GD + VK+++ D +G++ LS KVV Q Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVLQ 694 >gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL J1-023] Length = 723 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 316/702 (45%), Positives = 454/702 (64%), Gaps = 6/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295 +LE E+ + ++ + EK R I+++K++++ SY + E + E GE+ + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I L QAK GRLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILEHL 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +SE R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV I Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701 >gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] Length = 707 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/709 (44%), Positives = 464/709 (65%), Gaps = 20/709 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T+E+E AGR LK+ TG+IARQS GAV+ YG+TV+L+TV + + G DFFPLT Sbjct: 1 MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RESRP+ + L++R+IDR IRP+F + + + ++ V Sbjct: 61 VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179 D +++P + ++ +S AL +S +PF GPV G V YI+G+++LNP ++ + SL DL V+ Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + + K+C KE I + ++ Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286 + +S I+E+ L+ + K R + +D L+++++S F ++ Sbjct: 241 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEE 297 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + D+ K+VR +L KK R+DGR + +R + AQ+ +L HGS+LF RG+T Sbjct: 298 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q++ TLGT++DEQ VD+L F +HYNF P + GE RMGAP RRE+GHG LA Sbjct: 358 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHV 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R IL M+ +S S L PR++ + IP D+I +IG GGK I+GI+E+TG+ ++ Sbjct: 538 ARQQILEVMNTAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 596 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I S L +E ++ + E+N++Y+G+VV + FGAF+ ++GL Sbjct: 597 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694 +HIS++S ERVA DV+K GD VK++ D+ GKI LS K ++ +NT Sbjct: 657 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 704 >gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] Length = 752 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 309/686 (45%), Positives = 454/686 (66%), Gaps = 12/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGRPL +E G++A+Q++G+ L YG+TV+LAT + + G DFFPL V+++ER YA Sbjct: 17 ELAGRPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE +P+E IL R+ DR +RPLF K Y+N+ Q+I+ + +D + SP + Sbjct: 77 AGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIA 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 ++ AS AL +S +P+ GPV +V ++G+ V+NP + + S LDL V+GT+DA+ MV Sbjct: 137 GIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTKDAINMV 196 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKLEEEMS 245 E A+++ E +LDAI GH E K ++E + C K EP++ + + + Sbjct: 197 EAGAHEVPEATILDAIFRGHEEIKKLVEFQEAIIAQCGKPKAEPVLYEPD--PAVAAAVR 254 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFEDIQAKVV 303 E LR + P+K R + +D++KK + E + EGE I V +D+ ++V Sbjct: 255 TRYTERLRAAINHPDKQAREQAVDEVKKAALEELLPE---FPEGEMDIKHVLDDVLKEIV 311 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L++ +R DGR + +R I +VGLL R HGS LF RG TQ + V +LG D Q + Sbjct: 312 RSQILEEGIRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQML 371 Query: 364 DSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 D+L + +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP +FPYT Sbjct: 372 DTLGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELEFPYT 431 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ S+GS+SMA+ CGS+LALMDAGVPI PVAG+AMGL+K+GD F +L+DI G Sbjct: 432 IRLVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGI 491 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI G+ ++ AL+QA+ GRL IL +M +V+ + Sbjct: 492 EDHLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLEVIDKP 551 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + PR+ IM IP ++IR VIG GG+++ I ++ G K++I+DDG V I++ + Sbjct: 552 RPELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYISAQTQQG 611 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E A+E I I EV +Y G+V ++M FGAFV ++GLVH+S+L+ +RV + D Sbjct: 612 GEKAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPRVED 671 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 +V+ GDTV VK+++ DD G++ LS K Sbjct: 672 MVRPGDTVLVKVVEIDDLGRVNLSRK 697 >gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis E1Sol] Length = 704 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 457/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ + ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDVYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. St. Maries] gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. St. Maries] Length = 805 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 333/703 (47%), Positives = 469/703 (66%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+DGAV+ YG T VL+TVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF + +E ++ N++ + Sbjct: 60 VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177 D S P V+++ A+AAL +SG+PF P+ GA++ YI + Y+LNP +E + LD+F Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236 SGT+ +V+MVE EA++LSE+ +L A+ FGH C V++ I + A+ + +V D Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292 K+ ++S E V+ K R Q+D ++ + S +H + E E++ Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +VR +LD R+DGR + +R+I +V L+ R+HGS+LF RGDTQA+V+ Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT +DEQ VD G +R F++HYNF A GE + + P RREIGHG+LA RAIHPV Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+K+GD Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDED+LG MDFKVAGT GITA+QMDMKI GI +I+ +LQQAK GRL I+ Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M KV+ ESR + + PR+E M I ++I+NVIG GGK +R I E+TG K+ I DGT Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + S +E A+ MI I PEV K++ G + ++ +GAFV F G R GLVHIS++ Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E + SDV+ D V V ++ D+ ++LSM+ VDQ++G Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701 >gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. 3_1_5R] Length = 743 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 319/709 (44%), Positives = 464/709 (65%), Gaps = 20/709 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T+E+E AGR LK+ TG+IARQS GAV+ YG+TV+L+TV + + G DFFPLT Sbjct: 37 MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 96 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RESRP+ + L++R+IDR IRP+F + + + ++ V Sbjct: 97 VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179 D +++P + ++ +S AL +S +PF GPV G V YI+G+++LNP ++ + SL DL V+ Sbjct: 157 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 216 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + + K+C KE I + ++ Sbjct: 217 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 276 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286 + +S I+E+ L+ + K R + +D L+++++S F ++ Sbjct: 277 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEE 333 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + D+ K+VR +L KK R+DGR + +R + AQ+ +L HGS+LF RG+T Sbjct: 334 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 393 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q++ TLGT++DEQ VD+L F +HYNF P + GE RMGAP RRE+GHG LA Sbjct: 394 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 453 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL Sbjct: 454 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 513 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA Sbjct: 514 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHV 573 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R IL M+ +S S L PR++ + IP D+I +IG GGK I+GI+E+TG+ ++ Sbjct: 574 ARQQILEVMNTAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 632 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I S L +E ++ + E+N++Y+G+VV + FGAF+ ++GL Sbjct: 633 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 692 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694 +HIS++S ERVA DV+K GD VK++ D+ GKI LS K ++ +NT Sbjct: 693 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 740 >gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 700 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 307/684 (44%), Positives = 456/684 (66%), Gaps = 5/684 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E++ AGR L ++TG++A+ ++G+ L YG+TVVL T + ++G DFFPL+V+Y+ER Sbjct: 6 ELDLAGRKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +PTE IL SR+IDR IRPLF Y+N+ QVI V+ D + P Sbjct: 66 YSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVL 186 +V+M+ +S AL +S +PF GP V ++G +++NP L+ ++ L L VSGT+DA++ Sbjct: 126 IVAMIGSSVALSISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSDLHLTVSGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEM 244 MVE AN++ E+V+LDAI++ H K ++E I + K K +++ D LE+++ Sbjct: 186 MVEAGANEVPEEVMLDAIMYAHEYIKQIVEFIEGIVKEVGLPKAEVIVHEID-DNLEQQV 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + E + + EK R ID ++++++ +F E+ N +I V I + +R Sbjct: 245 REFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLEDIDEVLYTITKEQMR 303 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ ++K+R+DGR + +R I+ VG+L RTHGS++F RG TQ + V TLG D Q +D Sbjct: 304 KMITEEKIRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILD 363 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + +M HYNF P + GE + P RREIGHG LA RA+ P++P +FPYT+R Sbjct: 364 GLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIR 423 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+GD IL+DI G ED Sbjct: 424 LVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSILTDIQGIED 483 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFKVAGT+ GITA+QMD+KI GI +I+ +AL++A++GRL ILN+M + + E R Sbjct: 484 FLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLETIKEPRK 543 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L + PR+ + + P++IR++IG GGK I I+ TG K++I+DDG V I+S+ L E Sbjct: 544 ELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKAGE 603 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+ +I +IT EV IY G+V ++ FGAFV ++GLVHIS+L + V K DVV Sbjct: 604 KAKMIIEAITKDVEVGSIYLGKVTRLASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVV 663 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+ + D +G+I LS K Sbjct: 664 NIGDEILVKVTEIDKQGRINLSRK 687 >gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] Length = 703 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 326/692 (47%), Positives = 463/692 (66%), Gaps = 21/692 (3%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGRPL +ETG++A+Q++GAVL YG+TVVL+T + +D DFFPL VNY+E+ YA Sbjct: 11 EWAGRPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-VDFFPLMVNYEEKLYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP E+ L SR+IDR IRPLF K Y+++ QVI VM D ++SP + Sbjct: 70 AGKIPGGFNKREGRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PFEGP+ G V ++G+ ++NP + + + S LDL V+G DAV MV Sbjct: 130 AMIGSSMALAVSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVLDLQVAGHFDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIE----AISKLAKMCAK-EPIVIDSKDFSKLEEE 243 E A +++ED +L+AI+FGH E K ++E I ++ + ++ P+ +D+ SK+E+ Sbjct: 190 EAGAKEVAEDKMLEAIMFGHAEIKKLVEFQQSIIDEIQPVKSEFVPVEVDADLESKVEQ- 248 Query: 244 MSQMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDI 298 + E +S I EK R + I +K K++ F E +E I +V F+ + Sbjct: 249 ----LSESFGLSQAIQTQEKLAREENITAIKLKVIEAFEGE----DEAVITAVNKKFDAL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR ++ ++KVR DGR + +R + ++VG+L R HGS LF RG TQA+ V TLG Sbjct: 301 IKEEVRRLITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALG 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D L + +M HYNF + GE + AP RREIGHG L RA+ V+P + Sbjct: 361 EHQIIDGLGVEEEKRYMHHYNFPNFSVGETGPIRAPGRREIGHGALGERALLQVIPDEKE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV +++ ILSD Sbjct: 421 FPYTIRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI G++E+I+ AL+QA+ GRLHI+ M Sbjct: 481 IQGMEDALGDMDFKVAGTKEGITAIQMDIKINGLTEDILREALEQARVGRLHIMEHMLST 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE R +L ++ P++EI+ I PD+IR+VIG GGK I I++ TG K++I+ DGTV I SS Sbjct: 541 ISEPRAELSQYAPKIEIIHINPDKIRDVIGPGGKKINEIIDATGVKLDIEQDGTVFIGSS 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + IEAA+++I +I EV +IY V ++ FGAFV +D LVHISQ++ ER+ Sbjct: 601 DASMIEAAKKLIENIVREAEVGQIYMATVKRIEKFGAFVEIFPGKDALVHISQIALERIN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DVVK GD VK+ + D +G++ S KV+ Sbjct: 661 KVEDVVKLGDQFLVKVTEIDKQGRVNASRKVL 692 >gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum reducens MI-1] gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum reducens MI-1] Length = 740 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 323/711 (45%), Positives = 461/711 (64%), Gaps = 30/711 (4%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 EI GR L LETGR+A+Q+ GAVL TYGETVVL T ++ +D DFFPLTV+Y+ER Sbjct: 10 EISLGGRTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRD-IDFFPLTVDYEERL 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE RP+E IL R+IDR IRPLF K +NE QV+ VM D +++P Sbjct: 69 YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPE 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ASAAL +S +P + P+ G V ++GQ+V+NP + + + S + L V+GT DAV+ Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDMHLVVAGTDDAVM 188 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS-----KLAKMCAKEPIVIDSKDF-SKL 240 MVE A ++ E +L+ I++GH + K +++ I L A E + I F S + Sbjct: 189 MVEAGAKEVPESEMLEGIMYGHEKVKEIVKFIEDFRTEALGMGLAFEKMEIPEPQFDSNM 248 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----------EHSSWNEGE 290 E + + +E +R E + C + KK+ Y E N E Sbjct: 249 SEAILTIAEEAIR------EAVLHCSREKLTKKQREVYMDEVMSGLQEKFLEQFPENPKE 302 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + + E + KVVR ++ K+R+DGR + +R IS +VG+L RTHG+ LF RG TQ + Sbjct: 303 VTMLIEKAEKKVVRRIITHDKLRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILS 362 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TLG+ +EQ +D L + +M HYNF P +TGE M +P RREIGHG LA RA+ Sbjct: 363 VATLGSISEEQILDGLGVEESKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALE 422 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 P++P FPYT+R+VSE ES+GS+SM +VCGS+L+LMDAGVP+ PVAG+AMGL+ + Sbjct: 423 PMIPPEEVFPYTIRVVSEAIESNGSTSMGSVCGSTLSLMDAGVPLKAPVAGVAMGLIMEE 482 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D F +L+DI G EDHLG MDFKVAG+ +G+TA+QMD+KI GI+ + AL+QA RGR+ Sbjct: 483 DQFTVLTDIQGLEDHLGDMDFKVAGSANGVTALQMDIKIPGITREVFEQALEQAHRGRMF 542 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL +M +VLS R ++ P + +I PD+IR++IG GGK+I+ +VE+TGA ++I+DD Sbjct: 543 ILGKMLEVLSTPRAEISVHAPAIIRTSIHPDKIRDIIGPGGKIIKKLVEETGADIDIEDD 602 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARD 644 G V IA+ + + A E+I+SIT +V K+Y G+V +V DFG FV ++ Sbjct: 603 GRVFIAAVDREKGKRALEIIQSITAEVQVGKLYNGKVTRVTDFGCFVEVIPGVMGLPGKE 662 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 GLVHISQL+ +RV KT D+VKEG+ + VK + +D +G++KLS K ++ G Sbjct: 663 GLVHISQLAFQRVEKTEDIVKEGEVIAVKAIGYDQQGRLKLSKKEAMRDMG 713 >gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis F0421] gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis F0421] Length = 700 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/689 (43%), Positives = 460/689 (66%), Gaps = 12/689 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HTV + L LETGR+A+Q++GA+ A +G + VLATV ++G D+ PLTV+Y Sbjct: 3 HTVSYKIGDSELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYN 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF K + + Q+I + D+ + Sbjct: 63 EKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMIN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +++++A+SAA+++S +PF GPV A++ Y+NG+YV+NP + D+ +++ V+GT++ Sbjct: 123 PPDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFS 238 + MVE A+++SE+V+L A+ H K + + +L C KE P+ ++ ++ Sbjct: 183 GITMVEGGAHEVSEEVMLTALEKAHEFIKIICDLQEQLRNACGKEKLPLVPLSVELENKQ 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFED 297 + +E + E L ++ K+ R D +K + ++ + + ++ ++F+D Sbjct: 243 AIHDEAYPRLSEAL----YVKGKFERRAACDAVKADIAEKYAEQLEDEVQTKLFNTLFDD 298 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ ++R +LDK +R+DGR++E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT Sbjct: 299 MEYHILRENILDKGLRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTV 358 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ D + G +R +F++HYNF P + GEV RMG RREIGHG LA R++ P++P Sbjct: 359 FDEQVYDDIEGDRRENFILHYNFPPFSVGEVGRMGT-GRREIGHGYLAHRSLSPMIPSRE 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEI ES+GSSSMATVCG +L+L+ AGVP+ PVAGIAMGL+ DGD + ILS Sbjct: 418 KFPYTVRVVSEILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAILS 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G+EDHLG MDFKVAGT++GIT QMD+KI G+S IM AL QAKRGR+HIL M++ Sbjct: 478 DILGEEDHLGDMDFKVAGTENGITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQ 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S+ + ++ PR+E + I D+I +IG GGK I+ + EQ +N D+DGTV I Sbjct: 538 TISKPNADISKYAPRIECVKIAVDKIGALIGPGGKNIKALSEQYQVTINTDNDGTVTIYG 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 A+ + + + PEV +IY+G V K+M+FGAFV ++GL HIS+LS ERV Sbjct: 598 KDSQSALDAKAAVIGVVEEPEVGRIYQGTVKKIMEFGAFVEILPGKEGLCHISKLSRERV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 K DV+KE + VKLL+ D ++ LS Sbjct: 658 GKVGDVLKEEQQIPVKLLEIDKMNRLNLS 686 >gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] Length = 723 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 316/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R IDD+K++++ + ++ NE EI+S + Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIDDVKEEILESYKAKELE-NESEILSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis ATCC 33386] gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis ATCC 33386] Length = 710 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 316/713 (44%), Positives = 466/713 (65%), Gaps = 35/713 (4%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + E++ + +K+ +G+IARQ+ GAV+ G+TV+L T + +++G DFFPLT Sbjct: 1 MFNEKSYELKIGEKTVKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+++RESRP+ +E+LI+R+IDR IRPLF + + ++I V+ Sbjct: 61 VDYIEKFYASGKFPGGFIKRESRPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITVISF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + P ++ + SAAL +S +PF GPV G V YI+G++VLNP +E + S ++L V+ Sbjct: 121 DEVNLPENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIELSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT DAV MVE AN++ ED++L+AI+FGH K+ +MC ++ I + +K Sbjct: 181 GTADAVTMVEAGANEIPEDIMLEAIMFGH----------GKIKEMCEEQEKFISQFEVNK 230 Query: 240 LEEEMSQMIKEDLRVSCFIPEK--------------YVRCKQIDDLKKKMVSYFSSEHSS 285 +E E++++ E V FI EK + R ID L +++ FS+ + + Sbjct: 231 MEFEVAEVNPE---VKSFIDEKATEELGAAIEKHGKHERDDAIDALFDRLLEEFSASYEN 287 Query: 286 WNE------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 NE E + + D+ K+VR +L KK R DGR +E +R I ++ L HGS+ Sbjct: 288 -NEIPADIAKEFKNYYHDLMKKMVRESILYKKNRPDGRKTEEIRPIDVEIDTLPIPHGSA 346 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQA+V VTLG+R +EQ VD + R F +HYNF P + GE M AP RRE+ Sbjct: 347 LFTRGETQALVTVTLGSRVNEQIVDGMEEESRKKFYLHYNFPPYSVGEAGFMRAPGRREL 406 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ ++P+ FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+ V Sbjct: 407 GHGSLAERALKYMIPEQEDFPYTIRVVSEITESNGSSSQASICGGSLALMAAGVPMKSSV 466 Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 AGIAMGL+K+ ++F++L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+ IM + Sbjct: 467 AGIAMGLIKENEEFVVLTDIQGLEDHLGDMDFKVAGTKNGITALQMDIKITGITREIMEI 526 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA GR+ IL++M+ V+ E R + E P++ M I P +I +IG GGK I+ I++ Sbjct: 527 ALKQAHNGRMFILDKMNAVIPEPRKDVSENAPKIHFMKIDPSKIAILIGPGGKTIKSIID 586 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 QTGA ++I+DDG+V I + ++ E+++S T E+N +Y G+VVK+ FGAFV Sbjct: 587 QTGATIDIEDDGSVAIFVKEKSSLDKTIELVKSYTQSVELNAVYTGRVVKIAKFGAFVEV 646 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 ++GL+HIS++ ERV K DV+KEG + VK++ +D K LSMK ++ Sbjct: 647 LPGKEGLLHISEIKKERVNKVEDVLKEGQIIKVKVIGMEDENKFNLSMKALEN 699 >gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Mississippi] gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Virginia] Length = 805 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 333/703 (47%), Positives = 469/703 (66%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+DGAV+ YG T VL+TVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF + +E ++ N++ + Sbjct: 60 VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177 D S P V+++ A+AAL +SG+PF P+ GA++ YI + Y+LNP +E + LD+F Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236 SGT+ +V+MVE EA++LSE+ +L A+ FGH C V++ I + A+ + +V D Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292 K+ ++S E V+ K R Q+D ++ + S +H + E E++ Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +VR +LD R+DGR + +R+I +V L+ R+HGS+LF RGDTQA+V+ Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT +DEQ VD G +R F++HYNF A GE + + P RREIGHG+LA RAIHPV Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+K+GD Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDED+LG MDFKVAGT GITA+QMDMKI GI +I+ +LQQAK GRL I+ Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M KV+ ESR + + PR+E M I ++I+NVIG GGK +R I E+TG K+ I DGT Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + S +E A+ MI I PEV K++ G + ++ +GAFV F G R GLVHIS++ Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E + SDV+ D V V ++ D+ ++LSM+ VDQ++G Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701 >gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus neapolitanus c2] gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus neapolitanus c2] Length = 698 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 332/690 (48%), Positives = 466/690 (67%), Gaps = 3/690 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T + ++ + L TG IARQ+ GAV+ G+TVVL TVV + + + GQDF PLTV Y Sbjct: 5 VFTEQFDYGRHSVTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEPGQDFLPLTVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 QE+ YA G+IPGG+ +RE R TE E LI+R+IDR +RPLF K + N+ QVI V+ D E Sbjct: 65 QEKFYAAGRIPGGFFKREGRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPE 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + +M+ ASAAL LSGLPF+ + A+V YIN +VLNP E S L+L V+GT+ Sbjct: 125 VPGDIPAMLGASAALALSGLPFDAHLGAARVGYINEAFVLNPAQTEMADSRLELVVAGTE 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241 +AVLMVE EA++L E +LDA++FGH + I AI +LA A+ + + LE Sbjct: 185 EAVLMVESEADRLPEATMLDAVMFGHEAAQSAIAAIRRLAANAARPAMAWAPPVEHPDLE 244 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + + I EK R ++++L+++ ++ F+ + + + + S+ E +++ Sbjct: 245 AKIRTAFGDSIAETYQIAEKQQRYLRLNELREEAIAQFADDVAVPAK-LVSSLIESLESS 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +LD R+DGRD++T+R I+ + G+L R HGS+LF RG+TQA+VV TLG+ D Q Sbjct: 304 VVRGRVLDGAARIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D++ G + F+ HYNF P + GE R GAP RREIGHG LARR + V+P PY Sbjct: 364 LIDAVVGEYKESFIFHYNFPPYSVGETGRFGAPKRREIGHGNLARRGVKAVIPNPENSPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 TLR+VSEITES+GSSSMA+VCG+SL++MDAGV I+ PVAGIAMGL+K+G+ F++LSDI G Sbjct: 424 TLRVVSEITESNGSSSMASVCGASLSMMDAGVEIAAPVAGIAMGLIKEGNRFVVLSDILG 483 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G+TA+QMD+KI GI+ IM AL QAK GRLHIL M+ L+ Sbjct: 484 DEDHLGDMDFKVAGTADGVTALQMDIKINGITREIMSQALDQAKGGRLHILGIMNAALAA 543 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R + P+ I PD+IR VIG GG I+GI T +++I DDG + I ++S Sbjct: 544 PRKSVAPNAPQFIKFKINPDKIREVIGKGGATIQGITRDTHTQIDISDDGQITITATSAE 603 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + E AR + IT EV KIY+G+VV++ DFGAFV+ +DGL+HISQ+S ERV + + Sbjct: 604 QGEEARRRVEQITVEAEVGKIYEGKVVRITDFGAFVNILPGKDGLLHISQISDERVERVT 663 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 D ++EGD V V LL+ D +G+++L+M+ +D Sbjct: 664 DKLQEGDNVRVLLLELDKQGRMRLTMRGLD 693 >gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 1816] Length = 728 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE EI+S + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] Length = 699 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 311/687 (45%), Positives = 456/687 (66%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G YV+NP + E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E K ++ ++ K+ + +D + +E+ + Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEALVEKVQAL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303 ++ L+ + +K R + +D LK+++V++F E NE E+ ++ D+ + V Sbjct: 250 TEEKGLKDTVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIGHPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + A I Sbjct: 550 KELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S ER+ K DV Sbjct: 610 NRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GD++ VK+ + D +G++ S K + Sbjct: 670 LNIGDSIEVKITEIDKQGRVNASHKTL 696 >gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis V583] gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis HH22] gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis D6] gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis V583] gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis HH22] gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis D6] gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2137] gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0309B] gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0309A] Length = 704 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + S E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFSEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX0104] gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Merz96] gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis AR01/DG] gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis X98] gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis R712] gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis S613] gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0109] gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 512] gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 516] gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX0104] gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Merz96] gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ARO1/DG] gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis X98] gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis R712] gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis S613] gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76] gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0109] gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 512] gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 516] gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2141] gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4244] gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0043] gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1302] Length = 704 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 10403S] Length = 723 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE EI+S + Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes serotype 4b str. F2365] gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459] gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 723 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE EI+S + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 723 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PF+GP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE E++S + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILEGYKTKELE-NEAEVLSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VGLL R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I +V ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS KV+ + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701 >gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T2] gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T2] Length = 704 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++EI+ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEIIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL N1-067] Length = 723 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PF+GP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE E++S + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VGLL R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I +V ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS KV+ + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701 >gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] Length = 723 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/702 (44%), Positives = 455/702 (64%), Gaps = 6/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295 +LE E+ + ++ + EK R I+++K++++ SY + E + E GE+ + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV I Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 762 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 308/684 (45%), Positives = 449/684 (65%), Gaps = 8/684 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGRPL +E G++A+Q++G+ L YG+TV+LAT + + G DFFPL V+++ER YA Sbjct: 20 ELAGRPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE +P+E IL R+ DR +RPLF K Y+N+ Q+I+ + +D + SP + Sbjct: 80 AGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIA 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 ++ AS AL +S +P+ GPV +V ++G+ V+NP + + S LDL V+GT+DA+ MV Sbjct: 140 GIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTRDAINMV 199 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKLEEEMS 245 E A+++ E +LDAI GH E + ++E + C K EP++ + + + Sbjct: 200 EAGAHEVPEATILDAIFRGHEEIRRLVEFQEAIIAQCGKPKAEPVLYEPD--PNVAVAVR 257 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 E LR + P+K R + +D++KK + +E E +I V +D+ ++VR Sbjct: 258 ARYTERLRAAINHPDKQAREQAVDEVKKTALEELLAEFPE-AELDIKHVLDDVLKEIVRR 316 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LD+ +R DGR +R I +VGLL R HGS LF RG TQ + V +LG D Q +D+ Sbjct: 317 QILDEGIRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDT 376 Query: 366 LSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP FPYT+R Sbjct: 377 LGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELDFPYTIR 436 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ S+GS+SMA+ CGS+LALMDAGVPI PVAG+AMGL+K+GD F +L+DI G ED Sbjct: 437 LVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGIED 496 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT G+TA+QMD+KI G+ ++ AL+QA+ GRL IL +M V+ + R Sbjct: 497 HLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLAVIDKPRP 556 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L + PR+ IM IP ++IR VIG GG+++ I ++ G K++I+DDG V IA+ + + Sbjct: 557 ELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYIAAQTQQGGQ 616 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+E I I EV +Y G+V ++M FGAFV ++GLVH+S+L+ +RV K D+V Sbjct: 617 KAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPKVEDMV 676 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 + GDTV VK+++ DD G++ LS K Sbjct: 677 RPGDTVLVKVVEIDDLGRVNLSRK 700 >gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS] gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS] Length = 733 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 325/701 (46%), Positives = 461/701 (65%), Gaps = 24/701 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71 G+ + +ETG++A+Q+DG+ + T +T+VLATVV ++ QDFFPL V Y+E+ A G Sbjct: 12 GKVITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RE RP+E EIL +R+IDR++RPLF Y ETQ+II+V+ D + V+ Sbjct: 72 KFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF P+ +V ING +++NP ++E Q +D+ + GT+D + M+E Sbjct: 132 IAASAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDICIGGTEDTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMS 245 E ++SE +LDAI FGH+ K + +LA AK P V + + +EE S Sbjct: 192 EMKEISEAEMLDAIKFGHDAIKKICALQRELAAEVAKPKRPFSPTVAPDELVNFVEEHCS 251 Query: 246 QMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFS------------SEHSSWNEGEIV 292 +K E+ + K I +K +++F+ + NE I Sbjct: 252 AELKALAYTPLAKEERAEKTKAIYTQTIRKTLTHFTDRVGPDQIEADPTSAFCLNEHMIE 311 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 ++ KV+R ++LD R+DGR E VR IS ++GL+ R HGS+LF RG+TQA+V + Sbjct: 312 ECIHAVEKKVMRHMILDDGKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTL 371 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT++D Q VD+L+ + FM+HYNF P + GE+ R+G RREIGHG LA RAI V Sbjct: 372 TLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGEIGRVGGAGRREIGHGNLAERAIKMV 431 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV+GIAMGL+K+GD Sbjct: 432 MPSEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDR 491 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI G+EDHLG MDFKVAGT GITA QMD+KI G+ +I+ AL+QA++GRLHIL Sbjct: 492 YAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILETALEQARKGRLHIL 551 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + M++ + ESR +G++ PR+ + IP D I VIG GG+ IR I E+TGA++NIDDDGT Sbjct: 552 DVMAEAIPESRADIGKYAPRLTTIQIPVDAIGMVIGKGGETIRSITEETGAEINIDDDGT 611 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHISQ 651 V IA SS +AA E I+++ PEV IY G+V + D GAFV F DGLVHIS+ Sbjct: 612 VTIACSSPEATKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEFLPKTDGLVHISE 671 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689 ++ ER+AK SDV+K GD + VKL+D D R GK K ++ + Sbjct: 672 IARERIAKVSDVLKVGDRIKVKLIDVRKDPRTGKTKFALSI 712 >gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida 3523] Length = 693 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 317/685 (46%), Positives = 467/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ + G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVIAGVRVGYTNGKYILNPNKQDLKDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNVIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GI+E+TGA+++ D G VK+ + Sbjct: 548 KKAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIIEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D GAFV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVTMIEEIVAEVEEGQVYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU121] Length = 699 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 314/695 (45%), Positives = 461/695 (66%), Gaps = 17/695 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF GP+ G V Y++G+YV+NP + E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246 E A++++E +L+AI FGH+E K ++ ++ E ++F +E EE+ + Sbjct: 190 EAGASEITESEMLEAIFFGHDEIKRLVAFQQEIIDYIQPE-----KQEFIPVERDEELVE 244 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDI 298 +K + L+ + +K R +D LK+ +V+ F E NE E+ ++ D+ Sbjct: 245 KVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAEFIDEEDPDNEALIKEVYAILNDL 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG Sbjct: 305 VKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + FM HYNF + GE + AP RREIGHG L RA+ ++P T+ Sbjct: 365 DYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTSD 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+D Sbjct: 425 FPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + Sbjct: 485 IQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L + P+V M I P++IR+VIG GGK I I+++TG K++I+ DG + I + Sbjct: 545 IDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGQIFIGAV 604 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I+ ARE+I IT EV ++Y +V ++ +GAFV +D L+HISQ+STER+ Sbjct: 605 DQEMIDRAREIIEEITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISTERIN 664 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K DV+K GD++ VK+ + D +G++ S K +++ Sbjct: 665 KVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINEK 699 >gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 723 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 316/702 (45%), Positives = 454/702 (64%), Gaps = 6/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295 +LE E+ + ++V+ EK R I+++K++++ SY + E + E E+ + Sbjct: 240 ELEAEVKAASEGKMKVAIKTEEKKAREAAIEEVKEEILESYKAKELENETEILSEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV I Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701 >gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] Length = 704 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 309/687 (44%), Positives = 453/687 (65%), Gaps = 6/687 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGRPL +E G++A+Q++GA L YG+T VLAT +S K DFFPLTVNY+ER YA Sbjct: 10 EWAGRPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKP-LDFFPLTVNYEERLYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE RP+E IL SR+IDR IRP+F ++NE QVI VM +D + + + Sbjct: 69 AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEMA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++ ++ ++ L V+G +DA+ MV Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTIHLSVAGNKDAINMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246 E A ++ E+++L+AI+FGH E K +I ++ KE P+ + D ++ ++ Sbjct: 189 EAGALEVPEEIMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKLPVTLFEID-EAIQADIKA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + D+ + EK+ R + I +K++++ SY E ++ ++ + + + VR Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKERVIASYEEQEADDETMKQVYTILDKMVKEEVRR 307 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 + + K+R DGR + +R +S++ GLLQRTHGS LF RG TQA+ + TLG D Q +D Sbjct: 308 QITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + FM HYNF + GE + P RREIGHG L RA+ V+P + FPYT+R Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESIFPYTIRC 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GS+S A++C S+LA+MDAGVP+ PVAGIAMGL+K G+ + IL+DI G EDH Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S NI+ AL QAK GR+HIL M L E R Q Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLPEPRKQ 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L F P++ I+ I PD+IR+VIG GGK I I+E+TG K++ + DGT+ I+S+ A Sbjct: 548 LSAFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSADEAMNAR 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I I +V + Y V ++ FGAF +DGL+HIS++ ER + DV+K Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 GD + VK+++ D +G++ LS KVV Q Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVIQ 694 >gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida Fx1] Length = 693 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKARIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis FSC198] gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp. tularensis FSC033] gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis NE061598] Length = 693 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARAGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. novicida U112] gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. novicida FTE] gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3548] gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida U112] gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3549] gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3548] gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. novicida FTE] Length = 693 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus OF4] gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus OF4] Length = 704 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 313/684 (45%), Positives = 454/684 (66%), Gaps = 4/684 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+WAGR L +ETG+ A+Q++GAVL YG+T VL+TV + K+ +FFPLTVNY+ER Y Sbjct: 10 IDWAGRELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPKN-LNFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP+E IL SR+IDR IRPLF ++NE QVI VM D S + Sbjct: 69 AAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQNCSSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL +S +PF+GP+ G V +G+ ++NP ++ ++ +DL V+GT+DA+ M Sbjct: 129 AAMIGSSLALSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDIDLVVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+ +L+AI++GH+E K ++ ++ + KE I K ++LE + Sbjct: 189 VEAGADEVPEETMLEAIMYGHDEIKRLVAFQEEVVQAAGKEKKEIQLKQVDAELESAVRN 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + DL+ + + EK+ R ID + K ++ + E G++ V + + + VR + Sbjct: 249 LAEADLKKAVQVQEKHERQAAIDAVMKPIIEKYEEEQEELV-GDVREVLQKVVKEEVRRL 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + +KVR DGR + +R +++QV LL RTHGS LF RG TQA+ + TLG D Q +D L Sbjct: 308 ITVEKVRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + FM HYNF + GE + P RREIGHG L RA+ P++P FPYT+R+V Sbjct: 368 GIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPIIPSENDFPYTIRLV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK + +L+DI G ED L Sbjct: 428 SEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHLTVLTDIQGMEDAL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT G+TA+QMD+KI GI+ ++ AL+QAKRGR+ IL+ M +SESR +L Sbjct: 488 GDMDFKVAGTKEGVTALQMDIKISGINREVLEQALEQAKRGRMVILDNMLSAISESRSEL 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E+ P++ M + PD+IR+VIG GK+I I+E+TG K++I+ DGTV I+S E A Sbjct: 548 SEYAPKIMTMHVNPDKIRDVIGPSGKMINKIIEETGVKIDIEQDGTVYISSVDSKMNEQA 607 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R++I I EV + Y G+V +V FGAFV +DGLVHISQL+ ER+ K DVV Sbjct: 608 RKIIEDIVREVEVGQTYLGKVKRVEKFGAFVELFKGKDGLVHISQLAEERINKVEDVVSI 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD + V++ + D++G++ LS KV+ Sbjct: 668 GDEILVRVTEIDNQGRVNLSRKVI 691 >gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL S4-171] Length = 723 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PF+GP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE E++S + Sbjct: 240 ELEVEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VGLL R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I +V ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS KV+ + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701 >gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J1-175] gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes L99] gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. Scott A] Length = 723 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 315/702 (44%), Positives = 455/702 (64%), Gaps = 6/702 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295 +LE E+ + ++ + EK R I+++K++++ SY + E + E GE+ + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV I Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX1322] gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis ATCC 29200] gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T1] gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T3] gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T8] gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DS5] gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis HIP11704] gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis JH1] gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis CH188] gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4248] gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0855] gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2134] gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0635] gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0102] gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis ATCC 29200] gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX1322] gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T1] gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T3] gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T8] gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DS5] gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis HIP11704] gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis JH1] gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis CH188] gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2134] gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0855] gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4248] gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0102] gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0635] gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0017] gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0027] gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0031] gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0312] gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0645] gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1341] gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1342] gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1346] gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0630] gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis 62] gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis OG1RF] gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1467] Length = 704 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] Length = 708 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 311/691 (45%), Positives = 468/691 (67%), Gaps = 16/691 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E GR L LETG++A+Q++G+VL YGETV+L T D G D+FPL +NY+ER Y Sbjct: 8 MELGGRELTLETGKLAQQANGSVLVRYGETVILVTATMDDPR--GMDYFPLMINYEERLY 65 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+++RE RP+E L SR+IDR +RPLF + +++ QVI V+ D ++SP V Sbjct: 66 SVGKIPGGFIKREGRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPEV 125 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ ASAAL +S +PFEGP+ G V ++G+ +LNP ++E ++ SLDL V+G +D V+M Sbjct: 126 AAMIGASAALSISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESSLDLIVAGNKDGVMM 185 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEE 243 VE AN+++ED +++AI +GH + + +I E ++K+ K A +V + + ++E Sbjct: 186 VESAANEVTEDKMIEAIDYGHQKLQGIIKLQEEMVAKIGKEEADLELV--TVEDPEVEAA 243 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE------IVSVFED 297 + + EDL+ + +K R + +D +K+++ +F+ E + +EG + S + Sbjct: 244 VREYAGEDLKEALLTKDKAERGENLDQVKEEVKEHFTDEFAD-DEGTEEKMKVVSSTLDK 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I + +R+++LD+ R+DGRD + VR I +V +L R HGS +F RG TQ + V TLG Sbjct: 303 ITKETIRSLVLDEGKRVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAV 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +D + + +M HYNF + GE + P RREIGHG L RA+ P++P+ Sbjct: 363 GDEQRLDGIEVKESKRYMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALRPMIPEHD 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+VSE+ ES+GS+S A++CGS+L+LMDAGVPI KPVAGIAMGL+K GD +LS Sbjct: 423 DFPYTIRLVSEVLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKVEVLS 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAG++ GITA+QMD+KI GIS++I+ AL+QA++GRLHIL++M + Sbjct: 483 DIQGIEDFNGDMDFKVAGSEDGITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLE 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+ ESR +L + P + M I P++IR+VIG GGK I+ I+++TG V+I+DDGTV IA+ Sbjct: 543 VMPESRDELSPYAPSIITMEIDPEKIRDVIGPGGKTIKKIIDETGVNVDIEDDGTVFIAA 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A++M+ +T+ EV +IY G+V +V FGAFV ++GLVHIS+L+ V Sbjct: 603 DDQESGKQAQQMVAKMTEDVEVGEIYLGEVKRVTHFGAFVEILPGKEGLVHISELADYHV 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + D++ GD + VKL + DD+ ++ LS K Sbjct: 663 DEVEDLLTVGDEILVKLTEIDDKDRLNLSRK 693 >gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4000] Length = 704 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICSGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG] gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG] Length = 693 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYAEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica LVS] gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. holarctica FSC200] gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica URFT1] gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica URFT1] gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica LVS] gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 693 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] Length = 705 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 310/685 (45%), Positives = 452/685 (65%), Gaps = 6/685 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++WAGR L++E G++A+Q++GA L YG+T VL+T ++ K DFFPLTVNY+ER Y Sbjct: 10 LDWAGRELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKP-LDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E L SR+IDR IRPLF ++NE QVI VM D + + Sbjct: 69 AVGKIPGGFIKREGRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M +S ALM+S +PF GP+ G V I+GQY++NP D+ +Q S++L V+GT+DA+ M Sbjct: 129 AAMFGSSLALMISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSINLIVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A ++SE+V+L+AI+FGH E K +I ++A+ K I + ++L + Sbjct: 189 VEAGAKEVSEEVILEAIMFGHEEIKKLIAFQEQIAEEVGKAKSDIQLYELDAELTSSLKD 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ DL + I EK R + ID++K + M +Y S+ + + + + + VR Sbjct: 249 AVEADLNAAVQINEKQARNEAIDEVKARAMAAYEESDDAVKKQAG--QILDKMVKDEVRR 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+K+R DGR +R +S++VG+L RTHGS LF RG TQA+ + TLG D Q +D Sbjct: 307 LITDEKIRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDG 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L FM HYNF + GE + P RREIGHG L RA+ V+P FPYT+R+ Sbjct: 367 LGIEDTKRFMHHYNFPLFSVGETGFLRGPGRREIGHGALGERALEAVIPNEKDFPYTIRL 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 V+E+ ES+GS+S A++C S+LA+MDAGVP++ PVAGIAMGLVK GD++ +LSDI G EDH Sbjct: 427 VAEVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTVLSDIQGMEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI G+S I+ AL QA+ GR+HIL M ++E R Sbjct: 487 LGDMDFKVAGTAKGITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLATIAEPRTT 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ P++ ++ I PD+IR+VIG GGKVI I+++TG K++ + DGT+ I+S Sbjct: 547 LSKYAPKIIMVKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIFISSVDEEMNAK 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+ MI +I +V + Y+G+V ++ FGAFV +DGL+HIS++ ER + DV+K Sbjct: 607 AKAMIENIVREAKVGEYYEGKVKRIEKFGAFVELFPGKDGLLHISEIQEERTKEVEDVLK 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 + VK+++ D +G++ LS KVV Sbjct: 667 MDQIIQVKVIEIDRQGRVNLSRKVV 691 >gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] Length = 715 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 317/692 (45%), Positives = 459/692 (66%), Gaps = 8/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + E AGR L LE G++A+Q+ G+VL YG+T +L+ V + K DFFPLTVNY+E Sbjct: 7 TYDFELAGRKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKP-LDFFPLTVNYEE 65 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+++RE RP+E IL SR+IDR +RPLF++ ++N+ Q++ V+ D + S Sbjct: 66 RLYAVGKIPGGFIKREGRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDCS 125 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +M+ SAAL +S +PFEGP+ G V I+G++V+NP + + + S + L V+GT A Sbjct: 126 PEIAAMIGTSAALCVSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDIHLTVAGTHKA 185 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 + MVE ANQ+ E ++L+AI+ GH+ K ++E + + K+ + VI + ++++ Sbjct: 186 INMVEAAANQVPEAIMLEAIMAGHDVIKQLVEFQNMIVSEIGKQKMEVILHEVDPEIDQA 245 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE--IVSVFEDIQA 300 + + L+ + I EK R IDD+K + +F+++ + ++ E E I V +I Sbjct: 246 VRAYAEARLKEAVRIEEKQARYDAIDDIKAETKEHFAAKDAEAYPEQEKMISEVLGNIVK 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ D+KVR DGR +R +S++ +L RTHGS++F RG TQA+ V TLG D Sbjct: 306 DEVRRLITDEKVRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDV 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + FM HYNF P + GE + P RREIGHG L RAI P++P +FP Sbjct: 366 QILDGLGLEESKRFMHHYNFPPYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEVEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478 YT+R+VSE+ ES+GS+S A++C S LALMDAGVPI PVAGIAMGL+ KD F IL+D Sbjct: 426 YTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFSILTD 485 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDHLG MDFKVAGT++G+TA+QMD+KI GI+ I+ +AL+QA+ GRLHILN M Sbjct: 486 IQGMEDHLGDMDFKVAGTEAGVTAIQMDIKISGINREILELALEQARVGRLHILNHMMST 545 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE R +L + P++ M I P++IR+VIG G+VI I+E+TG K++I+ DG V IAS Sbjct: 546 ISEPRKELSPYAPKIMTMTINPEKIRDVIGPQGRVINKIIEETGVKIDIEQDGRVFIASI 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A+++I + V ++Y G V +V +GAF+ ++GL HISQL+ ERVA Sbjct: 606 NHEANLRAKQIIEDLVREVAVGQVYLGTVKRVEKYGAFIELFAGKEGLCHISQLAEERVA 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 KT DVV GD V VK+ + DD+G++ LS K V Sbjct: 666 KTEDVVAVGDKVQVKVTEIDDQGRVNLSRKAV 697 >gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName: Full=Polynucleotide phosphorylase 2; Short=PNPase 2 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 312/691 (45%), Positives = 445/691 (64%), Gaps = 7/691 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T E+E GRP +E G++A + G+ + YG+T VL T + K+G DFFPL+ +Y Sbjct: 2 IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RESRP+E L +R+IDR IRPLF K Y N+ QVI V+ D + Sbjct: 62 EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P + +M+ +S AL +S +PF GP V I+G+Y++NP ++ + S L+L VSGT+ Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSELELIVSGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240 DAV+M+E AN+L+E +LDAI+F H E K ++ I + K +++ D S+L Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETD-SEL 240 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 E+ + L + +K R + I + + + YF ++ ++ E+ ++ Q Sbjct: 241 LAEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRSK-EVNTILSK-QI 298 Query: 301 KV-VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 KV R ++ + +R D R + +R IS++VG+L RTHG+ LF RG+TQ + V TLG D Sbjct: 299 KVETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L +M HYNF P + GE M PSRREIGHG L RA+ P++P F Sbjct: 359 AQRIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSE+ +GSSS A+VCGS+L+LMDAGVPI VAGIAMGL+K+ ILSDI Sbjct: 419 PYAIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MD KVAGT++GITA+QMD+KI GI NIM AL QAK GR HILN+M + + Sbjct: 479 QGMEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAI 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L + P+V + + PD++R VIG GGKVI I+++TG K+NI++DGT+ IA+ Sbjct: 539 TSPRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A EMI I P V ++Y G+V+K+MDFGAFV ++GLVHIS L+ ERVAK Sbjct: 599 QESARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV+ EGD + VKL++ + +GKI LS K + Sbjct: 659 VADVLAEGDLIEVKLMEINPQGKIGLSRKAL 689 >gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0012] Length = 704 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P + +M +S AL +S +PF+GP+ G V I+G+YVLNP +++ +Q ++L V+ Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQVIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 312/691 (45%), Positives = 445/691 (64%), Gaps = 7/691 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T E+E GRP +E G++A + G+ + YG+T VL T + K+G DFFPL+ +Y Sbjct: 2 IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RESRP+E L +R+IDR IRPLF K Y N+ QVI V+ D + Sbjct: 62 EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P + +M+ +S AL +S +PF GP V I+G+Y++NP ++ + S L+L VSGT+ Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSELELIVSGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240 DAV+M+E AN+L+E +LDAI+F H E K ++ I + K +++ D S+L Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETD-SEL 240 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 E+ + L + +K R + I + + + YF ++ ++ E+ ++ Q Sbjct: 241 LAEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRSK-EVNTILSK-QI 298 Query: 301 KV-VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 KV R ++ + +R D R + +R IS++VG+L RTHG+ LF RG+TQ + V TLG D Sbjct: 299 KVETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L +M HYNF P + GE M PSRREIGHG L RA+ P++P F Sbjct: 359 AQRIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSE+ +GSSS A+VCGS+L+LMDAGVPI VAGIAMGL+K+ ILSDI Sbjct: 419 PYAIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MD KVAGT++GITA+QMD+KI GI NIM AL QAK GR HILN+M + + Sbjct: 479 QGMEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAI 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L + P+V + + PD++R VIG GGKVI I+++TG K+NI++DGT+ IA+ Sbjct: 539 TSPRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A EMI I P V ++Y G+V+K+MDFGAFV ++GLVHIS L+ ERVAK Sbjct: 599 QESARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV+ EGD + VKL++ + +GKI LS K + Sbjct: 659 VADVLAEGDLIEVKLMEINPQGKIGLSRKAL 689 >gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T11] gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T11] Length = 704 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P + +M +S AL +S +PF+GP+ G V I+G+YVLNP +++ +Q ++L V+ Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] Length = 723 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 314/703 (44%), Positives = 454/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PF+GP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+D+K++++ + ++ NE E++S + Sbjct: 240 ELEAEVKVASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VGLL R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+E+TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A +I I +V ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQTMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS KV+ + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701 >gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 758 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 323/699 (46%), Positives = 457/699 (65%), Gaps = 8/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ I+W GR L LETG+IARQ+DG+V+ YG+T +L TVV + ++ DF PL Sbjct: 1 MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EESVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178 D +SP V +++ AAL +SG+PF + G V N Y+LNP + E + S LDLF+ Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ VL+AI FGH +PVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + ++D + K R + ++ ++ +++ + + +E I + Sbjct: 240 DITQELEKY-RKDFEEAYSKTVKQERVQALEVVRNNILNTL--KEAGKDEKLITYAVKSF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+D R + +R I + +L +THGS+LF RG TQA+VV LGT + Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI PVAGIAMGL+KD ++ IILSD Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED+LG MDFKVAGT GITA+QMDMKI GIS I+ +L+QAK GRLHIL +M+ V Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE R + + PRV I D+I IG GK IR + E++ AK+ I DDG V + + Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596 Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S E EAA+ MI SIT++ E I +VVK+ + R G +HIS+++ + V Sbjct: 597 SSTEAEAAKNMMIDSITEL-EQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHV 655 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 D++K+GDT ++DF+ G KLS + VDQ TG+ Sbjct: 656 ESIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694 >gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] Length = 707 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 307/693 (44%), Positives = 456/693 (65%), Gaps = 18/693 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 W GRPL +E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT+NY+E+ YAV Sbjct: 10 WGGRPLSVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLTINYEEKMYAV 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GKIPGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QV VM + + SP + + Sbjct: 69 GKIPGGFIKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCSPAMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 M+ +S AL +S +PF+GP+ G V +NG+YVLNP +++++ S + L V+GT A+ MVE Sbjct: 129 MLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESDIHLTVAGTAQAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249 A ++SE +L A++FGH + ++ ++ K + I +++E++ + I Sbjct: 189 SGAKEVSEADMLGALLFGHEAIQELVAFQKEVVAAVGKPKMEIT---LLQVDEQVKKAIY 245 Query: 250 ED----LRVSCFIPEKYVRCKQIDDLKK--------KMVSYFSSEHSSWNEGEIVSVFED 297 ++ ++ + EK R +I +K+ K ++ E S + E+ + ED Sbjct: 246 DEFYPTMKTAVMTEEKLAREDEIAKVKEIVKEAYAEKALALADDEASKLTK-EVKQIAED 304 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ K+R DGR + +R +S++VGLL R HGS LF RG TQA+ TL Sbjct: 305 LEKDVVRELITIDKIRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTLAPL 364 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L + F+ HYNF + G R G+P RREIGHG L RA+ ++P Sbjct: 365 GEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIPDET 424 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ IL+ Sbjct: 425 DFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILT 484 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL E++ Sbjct: 485 DIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALAQAKKARMEILEELTA 544 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + + R +L ++ P++E++ I P +I++VIG GG I GI+E+TG K++ID DG V IAS Sbjct: 545 TIDQPRAELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIEETGVKIDIDQDGKVSIAS 604 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+ A ++I +T +V ++Y G+VV+V FGAFV+ +DGLVHISQL+ ERV Sbjct: 605 ADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLANERV 664 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A DVVK GD V VK+ + D +G++ LS K + Sbjct: 665 ANVEDVVKLGDEVLVKVTEIDKQGRVNLSRKAM 697 >gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes EGD-e] gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL R2-561] gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J0161] gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes EGD-e] gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] Length = 723 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 314/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+++K++++ + ++ NE EI+S + Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELE-NESEILSEVAHI 298 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 ++ +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701 >gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] Length = 699 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/691 (45%), Positives = 457/691 (66%), Gaps = 11/691 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP + L +R+IDR IRPLF K Y+++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G YV+NP + E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 E A++++E +L+AI FGH E K ++ E I + + K+ + +D + +E+ Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPV--KQEFIPVERDEALVEKVK 247 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301 + ++ L+ + +K R + +D LK+++V +F E NE E+ S+ D+ + Sbjct: 248 ALTEEKGLKDTVLTFDKQQRDENLDALKEEVVEHFIDEEDPDNESLINEVYSILNDLVKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++ D+K+R DGR + +R + ++VGLL R HGS LF RG TQA+ V+TLG D Q Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQ 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L FM HYNF + GE + AP RREIGHG L RA+ ++P T FPY Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTDFPY 427 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT GITA+QMD+KI G++ ++ AL+QA++GRL I++ M + + Sbjct: 488 MEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDA 547 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 548 PRKELSAYAPKVVTMHIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQE 607 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I+ A+E+I IT EV ++Y +V ++ +GAFV +D L+HISQ+S +R+ K Sbjct: 608 MIDRAKEIIEEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVE 667 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 DV+ GDT+ VK+ + D +G++ S K + Q Sbjct: 668 DVLNIGDTIEVKITEIDKQGRVNASHKALTQ 698 >gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 718 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 316/694 (45%), Positives = 446/694 (64%), Gaps = 11/694 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TV E AG L LETG +A+Q++GAV YG TVVL T + KD +FFPLTV+Y+E Sbjct: 4 TVSEEIAGYQLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+++RE +PTE L +R+ DR IRPLF ++N ++ V+ D Sbjct: 64 RLYAVGKIPGGFIKREGKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQNCP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P + S++ ASAAL +S +PF+GP+ +V +N + V+ P +DE ++ LDL V+GT+DA Sbjct: 124 PEIASIIGASAALSISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQLDLVVAGTKDA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243 ++MVE EAN+L ED +L+AI+ H E K +I +L + ++ + ++ S +L E Sbjct: 184 IMMVEAEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQVGQKKMEVELDLPSDELVSE 243 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---------GEIVSV 294 + ++ ED+ I +K R +D+ K+K+V + +++S I S Sbjct: 244 VEELALEDIEKVLQIKDKLEREDAMDEAKQKVVDHLLEKYNSEENEDEEEELKEKHIKSA 303 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F+ I + +R+ ++ + R DGR + +R ++ V LL THGS LF RG TQ + V TL Sbjct: 304 FDSILKREMRSRIIHENSRPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTL 363 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D Q +D L + +M HYNF P + GE M P RREIGHG LA RA+ P++P Sbjct: 364 GALGDVQILDGLDIEESKRYMHHYNFPPYSVGEAGFMKGPGRREIGHGALAERALKPMIP 423 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GS+SM +VC SSL+LMDAGVPI K V+GIAMGL+K+GD Sbjct: 424 TEKDFPYTIRLVSEVLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLA 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G ED LG MDFKVAGT+ GITA+QMD+KI G + I+ AL+Q K G LHILN Sbjct: 484 ILSDIQGIEDFLGDMDFKVAGTEDGITALQMDIKISGTTREILKQALKQGKDGYLHILNI 543 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + +SE R +L PRV I PD+IRNVIG GGK+I I+++TG K++I+ DG + Sbjct: 544 MKQTISEPREELSPLAPRVIKKQIDPDKIRNVIGPGGKMINKIIDETGVKIDIEPDGLIY 603 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I+SS + E A + I + PEV ++Y G+VV+ +GAFV ++GLVHIS+L+ Sbjct: 604 ISSSDAEQAEQAIKAIDELIKEPEVGEVYLGKVVRTEKYGAFVEILPGKEGLVHISELAE 663 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +RV KT DV K GD + VK+++ D+RG+I LS K Sbjct: 664 DRVGKTEDVAKVGDEILVKIINIDERGRINLSRK 697 >gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] Length = 708 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 311/688 (45%), Positives = 462/688 (67%), Gaps = 10/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGR L++E G++A+Q++GA L YG+TVVL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 VDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M +S AL +S +PFEGP+ G V ++ ++V+NP +DE ++ + L V+GT+DA+ M Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH + K +I ++ KE + ++ + LE ++ + Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVELYTVDADLERQVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303 + + D+ + + EK+ R I ++K + + F + E E+++ +I +K+V Sbjct: 249 IAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDV---EEEVLNQVNEILSKLVKSE 305 Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++ ++KVR DGR + +R +S++ LL RTHGS LF RG TQA+ + TLG D Q Sbjct: 306 VRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 365 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D LS + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT Sbjct: 366 LDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDFPYT 425 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+K G+ + IL+DI G Sbjct: 426 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDIQGM 485 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT++G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M ++ Sbjct: 486 EDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTIATP 545 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L ++ P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGT+ I+S Sbjct: 546 RQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSIDQPM 605 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ER+ K D Sbjct: 606 NEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGKVED 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+++ D +G++ LS K + Sbjct: 666 VVSIGDEILVKVMEIDKQGRVNLSRKAI 693 >gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 630 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 311/624 (49%), Positives = 432/624 (69%), Gaps = 11/624 (1%) Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P + +M Sbjct: 1 KIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAM 60 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 + SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMVE Sbjct: 61 IGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVE 120 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244 EA +L+ED +L A++F H+E + VI AI +LA AK +P + + E Sbjct: 121 SEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEF 180 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 I + ++ K R ++ +LK ++V+ + E S + GE+ + F +I+ + VR Sbjct: 181 GDAISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGEIEYRTVR 236 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q +D Sbjct: 237 ENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLD 296 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP FPYT+R Sbjct: 297 TLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIR 356 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL+DI GDED Sbjct: 357 VVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDED 416 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M++++ +SR Sbjct: 417 HLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRN 476 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI S E Sbjct: 477 ELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAE 536 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AAR+ + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D++ Sbjct: 537 AARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDIL 596 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 KEG+ V V +LD D+RG+IKLS+K Sbjct: 597 KEGEEVEVLVLDVDNRGRIKLSIK 620 >gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis WY96-3418] gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 693 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 317/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D +P + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAVAPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica OSU18] gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] Length = 693 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNTYTIALKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 693 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E + + LETG +ARQ+DG+V + G VVL T V +S+ DG DFFPL+V+Y E+TY Sbjct: 8 FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F + NE Q++ V+ +D SP + Sbjct: 68 AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 ++++ ASA+L +SG P++ V G +V Y NG+Y+LNP + D LDL VSGT DA+LM Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE EAN L E V+L I++ H K +I +I++LAK+ +K I +K L+ ++ Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYFIYQINKFLKSQIKS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303 +++ + I K R +++ ++K ++ Y FSS+ + + E EI+ F DI+ +V Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R+ +L+ K R+DGR +ET+R I+ ++G+L HGS+LF RG+TQA+VV TLG+ D Q V Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +SL G ++ +M+HYNF P + GE +G AP RREIGH LA+RA V P +PY Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG + +LSDI GD Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+TA+QMD+KI GIS I+ AL+QA+ GRLHIL M++V+ E Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 + + + P++ +M I P +I++V+G GG ++GIVE+TGA+++ D G VK+ + Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++ A MI I E ++YKG++VK++D G FV+ G++DG + S++ E+ ++ Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 + EG + V + + D G++KLS+ Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690 >gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX9] gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX9] Length = 817 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 322/695 (46%), Positives = 450/695 (64%), Gaps = 15/695 (2%) Query: 5 HTVEIEWAG-RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 H V +E AG + +K ETGR+A+Q+ GA T G+ +LAT V K+G DFFPLTV Y Sbjct: 3 HDVTVELAGGKHIKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVEY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+ V D E Sbjct: 63 REFTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P V+ + AS AL LS +PF GPV +V I G +++NP E + S L++ V GT Sbjct: 123 NDPDVLGINGASCALALSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELNIMVVGTA 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 D ++MVE + + SE+ V+ AI F H E K + AI +L K+ K P+ +D + Sbjct: 183 DGIVMVESGSKETSEESVVSAIEFAHVEIKKICAAIEELVKLAGKTKRTVTPVEVDQEYL 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQI-DDLKKKMVSYFSSEHSSWNEGEIVSVF 295 L+ ++ + + + L E Y K I D+LKK + E + ++ + Sbjct: 243 GSLKAKVGERLSDALDTQKHPKFESYALVKTIKDELKKDL-----PEGDAAAGKKLSKYY 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E ++ + R +L+ ++R D R + +R ++ + G+L R HGS+LF RG+TQA+V TLG Sbjct: 298 ELMRESIFRDQVLNDRIRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLG 357 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T +D Q ++S +G + FM+HYNF P + GEV RM RREIGHG LA RAI VLP Sbjct: 358 TTDDAQRMESYTGEFKRRFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPG 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 + PYTLR+VS+I ES+GSSSMATVCG+SLALM AG+P+ VAG+AMGLVK+GD + I Sbjct: 418 EDESPYTLRVVSDILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAI 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI+G EDH G MDFKVAGT GITA+QMD+KI GI+ IM AL+QA+RGRL +L+ M Sbjct: 478 LTDIAGAEDHYGDMDFKVAGTRKGITALQMDIKIMGITPQIMREALEQARRGRLELLDTM 537 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +S + Q F PR+ M IP D+IR++IG GGKVIRGI++ TG K+++DD G V + Sbjct: 538 DATISSASEQKSAFAPRIHSMQIPTDKIRDLIGPGGKVIRGIIDATGVKIDVDDTGRVNV 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 ASS + A +MI +T PE+ K Y G+VV++ +FGAFV DGL+H+S+++ Sbjct: 598 ASSDADGLSRAIQMITDLTATPEIGKTYLGRVVRLAEFGAFVEIFPGTDGLLHVSEIAEH 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV + D ++EGD + VK+L + +IKLS K V Sbjct: 658 RVKEVKDELREGDQILVKVLAIEGN-RIKLSRKAV 691 >gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319] gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319] Length = 708 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 311/688 (45%), Positives = 461/688 (67%), Gaps = 10/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGR L++E G++A+Q++GA L YG+TVVL+T + K+ DFFPLTVNY+ER Y Sbjct: 10 VDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKN-VDFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D S + Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M +S AL +S +PFEGP+ G V ++ ++V+NP +DE ++ + L V+GT+DA+ M Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGTKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A+++ E+V+L+AI+FGH + K +I ++ KE + + + LE ++ + Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVALYTVDADLERQVRE 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303 + + D+ + + EK+ R I ++K + + F + E E+++ +I +K+V Sbjct: 249 IAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDV---EEEVLNQVNEILSKLVKSE 305 Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++ ++KVR DGR + +R +S++ LL RTHGS LF RG TQA+ + TLG D Q Sbjct: 306 VRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 365 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D LS + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT Sbjct: 366 LDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDFPYT 425 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+K G+ + IL+DI G Sbjct: 426 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDIQGM 485 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT++G+TA+QMD+KI G+S I+ ALQQAK+GR+ ILN M ++ Sbjct: 486 EDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTIATP 545 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L ++ P++ MAI PD+IR+VIG GK I I+E+TG K++I+ DGT+ I+S Sbjct: 546 RQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSIDQPM 605 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E A+++I + EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ER+ K D Sbjct: 606 NEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGKVED 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+++ D +G++ LS K + Sbjct: 666 VVSIGDEILVKVMEIDKQGRVNLSRKAI 693 >gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum NCIB 8327] gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum NCIB 8327] Length = 732 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 329/700 (47%), Positives = 461/700 (65%), Gaps = 23/700 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71 G+ + +ETG++A+Q+DG+ + +T+VLATVV ++ QDFFPL V Y+E+ A G Sbjct: 12 GKVITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RE RP+E EIL +R+IDR++RPLF Y ETQ+II+V+ D + V+ Sbjct: 72 KFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF P+ +V INGQ+++NP +E Q S LD+ + GT+D + M+E Sbjct: 132 IAASAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDICIGGTEDTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245 E ++SE +LDAI FGH K + +LA AK P V ++ + +E + Sbjct: 192 EMKEISEAEMLDAIKFGHEAIKKLCAFQKELAAEVAKPKRAFAPTVAPAELVAFIEANCA 251 Query: 246 QMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFSS---EHSSWN--------EGEIVS 293 +K E+ R K I + K + +FSS E + N E I Sbjct: 252 AELKALAYTPLAKEERSDRTKAIYKETIAKTLEHFSSITAEEIAANPEKALCQSEHMIDE 311 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 D++ KV+R ++LD R+DGR E VR IS ++GL+ R HGS+LF RG+TQA+V +T Sbjct: 312 CIHDVEKKVMRHMILDDSKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLT 371 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT++D Q VD+L+ + FM+HYNF P + GE R+G RREIGHG LA RAI V+ Sbjct: 372 LGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAERAIKMVM 431 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV+GIAMGL+K+GD + Sbjct: 432 PAEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRY 491 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI G+EDHLG MDFKV+GT GITA QMD+KI G+ +I+ AL+QA++GRLHIL+ Sbjct: 492 AVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQARKGRLHILD 551 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M++ + ESR +G++ PR+ + IP D I VIG GG+ IR I E+TGA++NIDDDGTV Sbjct: 552 VMTEAIPESREDIGKYAPRLTSIQIPVDAIGMVIGKGGETIRSITEETGAEINIDDDGTV 611 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHISQL 652 IA SS +AA E I+++ PEV IY G+V + D GAFV F DGLVHIS++ Sbjct: 612 TIACSSPEGTKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEFLPKTDGLVHISEI 671 Query: 653 STERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689 + ER+AK SDV+K G+ V VKL+D D R GK K ++ + Sbjct: 672 ARERIAKVSDVLKPGERVKVKLIDIRKDPRTGKTKFALSI 711 >gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter versatilis Ellin345] gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345] Length = 815 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 322/694 (46%), Positives = 452/694 (65%), Gaps = 13/694 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V TVE G+ L ETG++A+Q+ G+ + G++VVLAT + ++G DFFPLTV+Y Sbjct: 7 VATVEF-TGGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDY 65 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E TYA G+ PGG+++RE RP+E EIL SR IDR IRPLF + ++ ETQVI V+ D E Sbjct: 66 REYTYAGGRFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSE 125 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P V + ASAAL +S +PF GP+ +V I GQ ++NP DE + S L++ V GT Sbjct: 126 NDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVGTA 185 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237 + ++M+E A++ +E+ V+ AI FGH E K + ISKLAK K P+ +D Sbjct: 186 EGIVMIESGAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQPYL 245 Query: 238 SKLEEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L +++ + + L + E Y + K+I K K+ ++ + + ++ +E Sbjct: 246 DGLRKKIGADLADALNTEKYPKSESYAKVKEI---KSKLKEEIPADDDAALK-KLGKYYE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ + R + +K R DGR + +R I +V +L RTHGS++F RG+TQA+V TLGT Sbjct: 302 LLREDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGT 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +D Q ++ G + FM+HYNF P + GEV+ + RREIGHG LA RA+ VLP Sbjct: 362 GDDMQRMEGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSE 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 ++PY +R+VS+I ES+GSSSMA++CG SL+LMDAGVP+ PVAGIAMGLVK+GDD+ IL Sbjct: 422 DKWPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAIL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI+G EDH G MDFKVAGT GITA+QMD+KIGGI+ IM AL+QA+RGRL IL++M+ Sbjct: 482 TDIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMN 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +V+ R +L EF PR + IP D+IR++IG GGKVIRGIVE TG K++++D G V +A Sbjct: 542 EVIQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVA 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS + A +MI IT EV K Y G V ++ DFGAFV DGL+HIS+++ R Sbjct: 602 SSDQEAAKKALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + D + EGD V VK+L D +IKLS K V Sbjct: 662 IKDVKDELHEGDQVLVKVLAVDGN-RIKLSRKAV 694 >gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 698 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 311/691 (45%), Positives = 460/691 (66%), Gaps = 9/691 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++++ GRPL++E G++A+Q+ GAVL YGETVVLAT V + G DFFPLTVNY+E+ Sbjct: 7 KLDFRGRPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTG-DFFPLTVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGK+PGG+L+RE RP+E+ L +R+IDR IRP+F +NE Q++ V+ D ++SP Sbjct: 66 YAVGKVPGGFLKREGRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + +M AS AL +S +PF+GP+ G +V ++GQ ++NP +D+ +DL V+GT+ A+ Sbjct: 126 MAAMFGASLALGVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVAGTKTAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245 MVE +A ++ E +L+A++FGH K ++ ++ KE + +K + ++++ Sbjct: 186 MVESDAAEVPEAEMLEALLFGHEAIKELVAFQEEIISAVGKEKFELTLAKPLPDIVDQVN 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSV---FEDIQA 300 ++ + + + EK R + + D+ V YF +++ S E E I SV D++ Sbjct: 246 ELFQAKMVQAIQTEEKKAREEAVADVMAAAVEYFQTKYDSNPEFEEIIKSVNIALHDLEK 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ ++VR DGR + +R +S++VGLL R HGS LF RG TQA+ V TL + Sbjct: 306 DEVRRLITKERVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREH 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L FM HYNF P + GE RMG+P RRE+GHG L RA+ V+P +FP Sbjct: 366 QIIDGLGTEDYKRFMHHYNFPPYSVGETGRMGSPGRREVGHGALGERALKHVIPSEEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479 Y +R+VSE+ ES+GSSS A++CGS+LA+MDAG+PI PVAGIAMGLV D D D+ IL+DI Sbjct: 426 YVIRLVSEVLESNGSSSQASICGSTLAMMDAGIPIKAPVAGIAMGLVMDDDADYTILTDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK R+ IL++++ + Sbjct: 486 QGLEDHLGDMDFKVAGTAKGITALQMDIKIQGITEQILREALAQAKVARMQILDQITSTI 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L ++ P++E++ I DQI+ VIG GG+ I I+++TG K++IDD+G V I S Sbjct: 546 AAPRPELSKYAPKIEMVKIDIDQIKVVIGKGGETINKIIDETGVKIDIDDEGNVSIYSED 605 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A I A+++I S+T V ++Y G+VV++ FGAFV + GL+HISQ++ ER+ K Sbjct: 606 QAMINKAKDIIESLTHVVAAGEVYTGKVVRIEKFGAFVEILPGKQGLLHISQIAKERIDK 665 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD V VK+ + DDRG+I LS KV+ Sbjct: 666 VEDVLAMGDDVTVKVTEIDDRGRINLSRKVL 696 >gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium TX1330] gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium PC4.1] gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium TX1330] gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium PC4.1] Length = 736 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 459/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 29 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 88 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R + I+ +K + ++ + + + E+ Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729 >gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E980] gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E980] Length = 736 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 300/697 (43%), Positives = 458/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 29 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 88 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R + I+ +K + ++ + + + E+ Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +RV K DVVK GD + VK+ + D +G++ LS K + Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAM 724 >gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1039] gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1039] Length = 736 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 302/702 (43%), Positives = 458/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 29 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 88 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP V +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 148 ETDCSPAVAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R I+ +K + ++ + + + E+ Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729 >gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,141,733] gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,408] gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com12] gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com15] gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,141,733] gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,408] gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com12] gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com15] Length = 708 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 459/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 60 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R + I+ +K + ++ + + + E+ Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701 >gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] Length = 708 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 319/691 (46%), Positives = 450/691 (65%), Gaps = 13/691 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L++ETG++A Q++GAVL YG+T V V + ++G DFFPL+V+++E+ Sbjct: 6 EMELAGRKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGGY++RE +PTE IL SR+IDR IRPLF K Y+N+ QV+ + + + P Sbjct: 66 YAVGKIPGGYIKREGKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 VV+MV ASAAL +S +PFEGP+ V ++G+ V+NP + + S L L V+GT+DA++ Sbjct: 126 VVAMVGASAALSISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSRLHLTVAGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIV--IDSKDFSKLE 241 MVE AN++ ED +L+AI+FGH K ++ E I + P + +D + + + Sbjct: 186 MVEAGANEVPEDKILEAIMFGHEHIKQLVAFQEQIVSEVGIPKNVPELHHVDPEIETAVR 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E MI E +R + K R Q+D +K+ + +F+ E E EI +I + Sbjct: 246 EYAFDMISEAVRSN----NKQGREDQMDKVKEDIFEHFA-EAFPEREAEIDEAVYNITKE 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L + R DGR + +R IS +VGL+ R HGS LF RG TQ + + TLG DEQ Sbjct: 301 CVRKMVLTEGARPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++ LS + ++ HYN P +TGE M P RREIGHG LA RA+ P++P +FPY Sbjct: 361 MLEDLSLEESKRYIHHYNMPPYSTGEAKMMRGPGRREIGHGALAERALEPMIPSQEEFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479 T+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+KD D IL+DI Sbjct: 421 TIRLVSEVMSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLMKDEQSDKVAILTDI 480 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED G MDFKVAGT G+TA+QMD+K+ GI +I+ AL+QA GR+ I+N+M +V+ Sbjct: 481 QGLEDFFGDMDFKVAGTADGVTAIQMDIKVKGIDRSILEAALKQAYEGRMFIMNKMLEVI 540 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 SE R ++ + P++ M I PD+IR+VIG GGKVI I+ TG K++I++DGT+ IA+ Sbjct: 541 SEPRKEVSPYAPKIMTMTIDPDKIRSVIGSGGKVINKIIADTGTKIDIEEDGTIYIAAPD 600 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A +I I E +Y G+V ++M FGAFV ++GLVHIS+LS E VAK Sbjct: 601 SESGKKAMRIIEGIVKDVEAGDVYLGKVTRIMPFGAFVEILPGKEGLVHISKLSKEHVAK 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD + VK+ D D +G+I LS K V Sbjct: 661 VEDVVKVGDEILVKVTDIDKQGRINLSHKAV 691 >gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus] Length = 697 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 308/687 (44%), Positives = 460/687 (66%), Gaps = 7/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWA R L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPL VNY+E+ YA Sbjct: 11 EWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP++ L +R+IDR IRPLF K YK + Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP + + + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQM 247 E A++++E +L+ I FGH+E + ++ ++ E + + L E+++Q+ Sbjct: 190 EAGASEITESEMLEGIFFGHSEIQRLVNFQQEIVDHIQPEKKAFVPVEKEETLVEQVTQL 249 Query: 248 IKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303 + + L+ + +K R +D+LK+K+ + F E + NE E+ S+ D+ + V Sbjct: 250 TEANGLKDAVLTFDKQQRDINLDNLKEKVAAEFIDETDADNEALIKEVNSILNDLVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+ + Q + Sbjct: 310 RRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQIL 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L ++ FM HYNF + GE + +P RREIGHG L RA+ ++P FPYT+ Sbjct: 370 DGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDVKDFPYTV 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G+++ I+ AL+QA+ GRL IL+ M + + R Sbjct: 490 DALGDMDFKVAGTSEGITAIQMDIKIDGLTKEIIKEALEQARVGRLAILDHMLQTIDTPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L F P+V M I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + I Sbjct: 550 NELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDKNAI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + AR++I IT EV ++Y+G+V ++ +GAFV +D LVHISQ++ ER+ K DV Sbjct: 610 DQARKIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANERIEKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K GDT +K+ + D +G++ S KV+ Sbjct: 670 LKVGDTFKIKVTEIDKQGRVNASHKVL 696 >gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 699 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 321/708 (45%), Positives = 461/708 (65%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TVVL+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N LI+R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D S+P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEVSTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + E + AK+ KE I +F K Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEEFAKLYGKENI-----EFEK 235 Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290 EE+ ++K+ L+ + K R + +D L++++++ F E + E E Sbjct: 236 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIEENYPDIPEEE 293 Query: 291 ----IVSVFE----DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 I+S F+ D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF Sbjct: 294 LPEDIISEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ++ + TLGT+ DEQ +D L F +HYNF P + GEV RMG+P RRE+GHG Sbjct: 354 RGETQSLAITTLGTKSDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 414 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI++QTG Sbjct: 534 QAHEARQQILEVMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTG 592 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A V+I DDG V + + +E ++I S E N++Y+G+VV +M FGAF+ Sbjct: 593 ATVDITDDGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 652 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 653 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] Length = 805 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 331/703 (47%), Positives = 465/703 (66%), Gaps = 10/703 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ +EW R L +E+G+IARQ+DGAV+ YG T VL+TVV +S K+ DF PLT Sbjct: 1 MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF + +E ++ N++ + Sbjct: 60 VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177 D S P V+++ A+AAL +SG+PF P+ GA++ YI + Y+LNP +E + LD+F Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236 SGT+ +V+MVE EA++LSE+ +L A+ FGH C V++ I + A+ + +V D Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292 K+ ++S E V+ K C + K + +H + E E++ Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKPECSSLMPPGKACTQICAGKHVEESGEYTEQEVL 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + +VR +LD R+DGR + +R+I +V L+ R+HGS+LF RGDTQA+V+ Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT +DEQ VD G +R F++HYNF A GE + + P RREIGHG+LA RAIHPV Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+ VAGIAMGL+K+GD Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDED+LG MDFKVAGT GITA+QMDMKI GI +I+ +LQQAK GRL I+ Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M KV+ ESR + + PR+E M I ++I+NVIG GGK +R I E+TG K+ I DGT Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + S +E A+ MI I PEV K++ G + ++ +GAFV F G R GLVHIS++ Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E + SDV+ D V V ++ D+ ++LSM+ VDQ++G Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701 >gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 700 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 305/684 (44%), Positives = 453/684 (66%), Gaps = 5/684 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E++ AG+ L ++TG++A+ ++G+ L YG+TVVL T + ++G DFFPL+V+Y+ER Sbjct: 6 ELDLAGKKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +PTE IL SR+IDR IRPLF Y+N+ QVI V+ D + P Sbjct: 66 YSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVL 186 +V+M+ +S AL +S +PF GP V ++G++++NP L ++ L L VSGT+DA++ Sbjct: 126 IVAMIGSSVALSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEM 244 MVE AN++ E+V+LDAI++ H K +++ I + K K + I D S LE + Sbjct: 186 MVEAGANEVPEEVMLDAIMYAHEYIKKIVDFIEGIVKEVGLPKAEVTIHEID-SNLERLV 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + E + + EK R ID ++++++ +F E+ N +I V I + +R Sbjct: 245 REFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLADIDEVLYTITKEQMR 303 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ ++K+R+DGR + +R I+ +G+L RTHGS++F RG TQ + V TLG D Q +D Sbjct: 304 KMITEEKIRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILD 363 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + +M HYNF P + GE + P RREIGHG LA RA+ P++P +FPYT+R Sbjct: 364 GLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIR 423 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAG+AMGL+K+G+ IL+DI G ED Sbjct: 424 LVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGETVSILTDIQGIED 483 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFKVAGT+ GITA+QMD+KI GI +I+ AL++A++GRL ILN+M + + E R Sbjct: 484 FLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLETIKEPRK 543 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L + PR+ + + P++IR++IG GGK I I+ TG K++I+DDG V I+S+ L E Sbjct: 544 ELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKAGE 603 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+ +I +IT EV IY G+V ++ FGAFV ++GLVHIS+L + V K DVV Sbjct: 604 KAKMIIEAITKDVEVGAIYLGKVTRIASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVV 663 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+ + D +G+I LS K Sbjct: 664 NIGDEILVKVTEIDKQGRINLSRK 687 >gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO] gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium DO] gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1071] gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1636] gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1679] gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium U0317] gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a04] gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133C] gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0082] gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133A] gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133B] gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a01] gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO] gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1071] gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1636] gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1679] gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium U0317] gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a01] gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133B] gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133A] gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133C] gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a04] gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0082] Length = 736 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 29 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 88 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R I+ +K + ++ + + + E+ Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729 >gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] Length = 705 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 309/691 (44%), Positives = 460/691 (66%), Gaps = 12/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ AG +K ETG+ A+Q++G+V+A YG+T VL T ++G D+FPL VNY+ER Y Sbjct: 7 IDVAGGKMKFETGKYAKQANGSVVARYGDTTVLVTATMSEP-REGIDYFPLMVNYEERVY 65 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A+GKIPG RRE RP + L +R+IDR +RPLF + ++++ Q+I V+ D + P + Sbjct: 66 AIGKIPGSITRREGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDI 125 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ AS AL LS +PF+GP+ G +V ++G+ V+NP +E + S LDL V+GT+DAVLM Sbjct: 126 LALNGASVALTLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDLTVAGTRDAVLM 185 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246 VE AN++SEDV+LDAI H E K ++ ++ + K+ + + +L+EE+ + Sbjct: 186 VEAGANEVSEDVMLDAIELAHQEIKRLVLLQEEIGEEAGKKKFEFTKDEITPELDEEIRK 245 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGE-------IVSVFED 297 I D+ + IPEK R ++D++K+ + YF E++ + E + E Sbjct: 246 YISSDMENALRIPEKLERNAKVDEIKENTLQYFEDMFENNGLDNEEKNKQLKMVERTIEK 305 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + + VR +++++ +R DGR + +R I +VG L R HGS +F RG TQA+ VVTLG Sbjct: 306 VMKEKVRKMIIEEGIRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGAT 365 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ + L + +M HYNF P + GE S + +P RREIGHG L RA+ PV+P Sbjct: 366 SDEQILFGLGEEETKRYMHHYNFPPYSVGETSPLRSPGRREIGHGALGERALQPVIPDQE 425 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI +PVAGIAMGL+K+ + +ILS Sbjct: 426 EFPYTIRVVSEVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVVILS 485 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT +GITA+QMD+KI GIS+ I+ AL++A+ GRL+IL++M + Sbjct: 486 DIQGLEDFYGDMDFKVAGTRNGITALQMDIKIHGISKEILKKALKRAREGRLYILDKMLQ 545 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V+ + R +L + P + M + PD+IR++IG GGK+I I+++TG +++IDDDG+V I + Sbjct: 546 VIDKPRPELSPYAPLMITMKVSPDKIRHIIGPGGKIINKIIDETGVEIDIDDDGSVYILA 605 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 A+E+I +T EV IY+G+V K+ +FGAFV R+GLVHIS+L+ V Sbjct: 606 QDQESGNRAKEIINKLTKEVEVGDIYEGRVKKITNFGAFVEILPGREGLVHISELADHHV 665 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D+VK GD + VK+++ D+ G+I LS K Sbjct: 666 KKVEDIVKIGDRIPVKVIEIDELGRINLSRK 696 >gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0470] gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0470] Length = 704 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 300/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++++ ++A++++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,230,933] gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,502] gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,410] gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC 6] gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium D344SRF] gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1162] gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,230,933] gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,502] gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,410] gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC 6] gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium D344SRF] gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1162] Length = 708 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 60 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R I+ +K + ++ + + + E+ Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701 >gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium C68] gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium C68] Length = 708 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 60 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE+ +L A++FG + K ++ ++ + KE + + + Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R I+ +K + ++ + + + E+ Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLFKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701 >gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 703 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 317/708 (44%), Positives = 458/708 (64%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TVVL+T + + G DFFPLT Sbjct: 5 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N LI+R+IDR IRP+F + + ++ V+ + Sbjct: 65 VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 125 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + E AK+ KE I +F+K Sbjct: 185 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENI-----EFTK 239 Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------SS 285 EE+ ++K+ L+ + K R + +D L++++++ F E+ Sbjct: 240 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFVEENYPDVPEEE 297 Query: 286 WNE---GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 E E + + D+ +VR +L K R+DGR + +R + AQ+ +L HGS+LF Sbjct: 298 LPEDVIAEFKTYYHDLMKILVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 357 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ++ + TLGT+ DEQ +D L F +HYNF P + GEV RMG+P RRE+GHG Sbjct: 358 RGETQSLAITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 417 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 418 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 477 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL Sbjct: 478 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 537 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R+ IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI+EQTG Sbjct: 538 QAHEARIQILEVMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTG 596 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A V+I DDG V + + +E ++I S E N++Y+G+VV +M FGAF+ Sbjct: 597 ATVDITDDGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 656 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 657 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703 >gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] Length = 695 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 313/680 (46%), Positives = 455/680 (66%), Gaps = 7/680 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 +WAG+ L +E G +ARQ++ AV+ YG+TVVL T V + KD DFFPLTVNY+E+ YA Sbjct: 11 QWAGKELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+LRRE RP L +R+IDR IRPLF ++NE QVI V+ + + P + Sbjct: 70 VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V Y++G+YV+NP +++ ++ +DL V+GT+DA+ MV Sbjct: 130 AMLGSSLALSVSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLKVAGTKDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247 E A ++SE+V+L+AI+FGH E K +I ++ +E + ++ K + + E+ + Sbjct: 190 EAGAEEVSEEVMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMEVELKVIDENIYNEVLDL 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303 +++ + I +K R + I +K+++++ F + +E +IV + I V Sbjct: 250 SLTEMKSAIAIKDKQERDEAISVVKERVLAVFEERVTDEDELDIVKEAKLSLDKIVKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + + KVR DGR +R +++++ +L RTHGS+LF RG TQ++ VVTLG DEQ + Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM+HYNF + GEV AP RREIGHG L RA+ V+P FPYT+ Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEI ES+GSSS AT+C S+ALM AGVPI VAGIAMGLVK + + IL+DI G E Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI G+SE I+ +L+QA+ GRL IL+ M+ ++SE R Sbjct: 490 DHLGDMDFKVAGTSEGITALQMDIKIEGLSEQILKESLEQARVGRLQILDHMNNIISEPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ F P+++I+ I P++I++VIG GGKVI I+E+TG K++I+ G V I+S + I Sbjct: 550 EEVSTFAPKIKIIRIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQTGEVFISSPEIDGI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A E+I +IT EV ++Y +V ++ FGAFV D LVHIS+LS ERV K DV Sbjct: 610 NKAIEIIENITREAEVGEVYLAEVKRIEKFGAFVELFPGVDALVHISKLSAERVNKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKI 683 VK GDT+ VK++ D++G++ Sbjct: 670 VKIGDTLKVKVIKIDEKGRV 689 >gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus DSM 19965] gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus DSM 19965] Length = 697 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 297/697 (42%), Positives = 469/697 (67%), Gaps = 11/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++E AGRPL +ETG++A+Q+ G+VL YG+TVVL + + ++G DFFPLT Sbjct: 1 MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ Y+VGK+PGG+LRRE RP + +L +R+IDR IRPLF K +++ V+ V+ Sbjct: 59 VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +++P + ++ ASA++ +S +P++GPV G +V ++G++V+NP ++ ++ ++++ V+ Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G++ A+LMVE A + SE+ VLDAI++ H K ++E K+ + K+ FS+ Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQK---KELVFSE 235 Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + EE+ + I E +LR + F P+K R +++++K+ ++F + NE ++++ Sbjct: 236 IPEEIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCL 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + +VR ++ K+R DGR + +R I+ +VG++ RTHGS+LF RG TQA+ + TL Sbjct: 295 DHLTKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLA 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ ++ YNF GE P RREIGHG LA RA+ PV+P Sbjct: 355 PMNETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPS 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI PVAGIAMGLV +G+ F I Sbjct: 415 VDEFPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTI 474 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT GITA+QMD+KI G+S I++ AL+QA +GR+ IL ++ Sbjct: 475 LTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKI 534 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ +S+ L + P++ + IP D+IR+VIG GGK I I+ +TG K+++++DG V I Sbjct: 535 AECISKPAEHLSPYAPKIITLRIPVDKIRDVIGAGGKTINKIITETGVKIDVEEDGRVYI 594 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS + A++M+ S+T + ++Y G+V ++M FG FV ++G+VHISQL+ + Sbjct: 595 ASVDEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALK 654 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 RV K DVV EGD + VK+++ DD+G+I LS K + Q Sbjct: 655 RVEKVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQ 691 >gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12] Length = 743 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 316/705 (44%), Positives = 457/705 (64%), Gaps = 19/705 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T+EIE AGR LK+ TG+IARQS GA++ YG+TV+L+TV + + G DFFPLT Sbjct: 37 MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 96 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RESRP+ + LI+R+IDR IRP+F + + + ++ V Sbjct: 97 VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179 D +++P + ++A+S AL +S +PF GPV G V YI+G++VLNP ++ + SL DL V+ Sbjct: 157 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 216 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + + K+C KE I + ++ Sbjct: 217 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 276 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286 + +S I+E L+ + K R + +D L+++++ F ++H Sbjct: 277 M---ISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEE 333 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + D+ +VR +L KK R+DGR + +R + AQ+ +L HGS+LF RG+T Sbjct: 334 PILAFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGET 393 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q++ TLGT+EDEQ VD+L F +HYNF P + GE RMGAP RRE+GHG LA Sbjct: 394 QSLATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 453 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL Sbjct: 454 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 513 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA Sbjct: 514 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 573 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R IL M+ +S S L PR++ + IP D+I +IG GK I+GI+E+TG+ ++ Sbjct: 574 ARQQILEVMNAAIS-SPADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTID 632 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I S +E ++ + E+N++Y+G+VV + FGAF+ ++GL Sbjct: 633 ITDDGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 692 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +HIS++S ERV+ DV+K GD VK++ ++ GKI LS K +D Sbjct: 693 LHISEISKERVSNVEDVLKIGDVFKVKVISMEN-GKIALSKKKLD 736 >gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275] gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275] Length = 695 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 303/688 (44%), Positives = 452/688 (65%), Gaps = 10/688 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+AGR L +E G+I ++G + YG++VV+ +DG DFFPL+V+Y+E+ Y+ Sbjct: 10 EFAGRELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLSVDYEEKLYS 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+L+RE +P+E IL SR+IDR IRPLF K ++N+ QV+ V+ D + +P +V Sbjct: 70 VGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPDIV 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF GP + ++G++V+NP ++ + S + L VSGT+DA++MV Sbjct: 130 AMIGSSVALSISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSEMHLVVSGTKDAIMMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E A ++SED +L AI+F H K ++E I ++ KE + +E++ + Sbjct: 190 EAGAQEVSEDTMLKAILFAHEHIKKIVEFIEEIVAGSGKEK---EEVKLYHADEDIEAQV 246 Query: 249 KE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 KE +R + EK R + +D +K++ +YF + ++ E G+I V + I Sbjct: 247 KEFASAKMREAVQTVEKMERMENMDKVKEETFAYFEEKLENFEEVAGDIEEVLQAIIKDE 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+++ D++VR D R +R I + G++ RTHGS++F RG TQ + + TLG D Q Sbjct: 307 VRSLITDEEVRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGALGDVQK 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + +M HYNF + GE P RREIGHG LA RA+ PV+P FPY Sbjct: 367 LDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSQEDFPYA 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ S+GS+S A+VC S+L+L+DAGVPI VAGIAMGL+K D ++LSDI G Sbjct: 427 IRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVVVLSDIQGM 486 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT+ GITA+QMD+KI GI E+I+ AL QA+ GR+HIL EM KV+SE Sbjct: 487 EDHLGDMDFKVAGTEHGITAIQMDIKIDGIDEDILRRALAQAREGRMHILGEMRKVISEP 546 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P++E M I PD+I++VIG GGKVI I+++TG K++I+ G V IA + A Sbjct: 547 RPELSPYAPKIERMNINPDKIKDVIGPGGKVITKIIDETGVKIDIEQTGEVFIAGTDKAM 606 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+ A+E+I +I EV K+Y+G+V ++M+FGAF+ ++GL+H+SQ+S ERV D Sbjct: 607 IDRAKELIGNIVAEAEVGKVYRGKVTRIMNFGAFMEILPGKEGLLHVSQISKERVNNVED 666 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD + VK+ + D++G+I LS KV+ Sbjct: 667 VLNIGDELEVKVTEIDEKGRINLSRKVL 694 >gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] Length = 707 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 316/705 (44%), Positives = 457/705 (64%), Gaps = 19/705 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T+EIE AGR LK+ TG+IARQS GA++ YG+TV+L+TV + + G DFFPLT Sbjct: 1 MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RESRP+ + LI+R+IDR IRP+F + + + ++ V Sbjct: 61 VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179 D +++P + ++A+S AL +S +PF GPV G V YI+G++VLNP ++ + SL DL V+ Sbjct: 121 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + + K+C KE I + ++ Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 240 Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286 + +S I+E L+ + K R + +D L+++++ F ++H Sbjct: 241 M---ISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEE 297 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + D+ +VR +L KK R+DGR + +R + AQ+ +L HGS+LF RG+T Sbjct: 298 PILAFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGET 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q++ TLGT+EDEQ VD+L F +HYNF P + GE RMGAP RRE+GHG LA Sbjct: 358 QSLATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ V+P +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R IL M+ +S S L PR++ + IP D+I +IG GK I+GI+E+TG+ ++ Sbjct: 538 ARQQILEVMNAAIS-SPADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTID 596 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I S +E ++ + E+N++Y+G+VV + FGAF+ ++GL Sbjct: 597 ITDDGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +HIS++S ERV+ DV+K GD VK++ ++ GKI LS K +D Sbjct: 657 LHISEISKERVSNVEDVLKIGDVFKVKVISMEN-GKIALSKKKLD 700 >gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris StLB046] Length = 704 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 306/687 (44%), Positives = 448/687 (65%), Gaps = 10/687 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGRPL +E G++A+Q++GA + YGET VLAT + K DFFPLTVN++ER YA Sbjct: 10 EWAGRPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPK-ALDFFPLTVNFEERLYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE RP+E +L SR+IDR IRP+F ++NE Q I+ VM +D V Sbjct: 69 AGKIPGGFIKREGRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSNDSNCPADVA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMV 188 +M +S +L +S +PF+GP+ G V YI G++V+NP +++ + ++ L V+G +DAV MV Sbjct: 129 AMFGSSLSLAISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTVHLTVAGNKDAVNMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E A +++ED++L+AI+FGH E K +I ++ KE + + +L+ +++ I Sbjct: 189 EAGALEVTEDIMLEAIMFGHEEIKKLIAFQEQIVAEVGKEKLEVT---LYELDADLTAAI 245 Query: 249 KE----DLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVV 303 K D+ + +K +R + I +K +++ +Y + E ++ ++ + + V Sbjct: 246 KAECEADMNTAIQTVDKQLRQENITAVKTRVIEAYEAQEADEATMKQVNAILDKMVKDEV 305 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R +S++V LL R HGS+LF RG TQA+ + TLG D Q + Sbjct: 306 RRLITEDKVRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGALGDVQII 365 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + +M HYNF + GE R G+P RREIGHG L RAI V+P +FPY + Sbjct: 366 DGLGIEESKRWMHHYNFPQFSVGETGRYGSPGRREIGHGALGERAILAVMPTEEEFPYAI 425 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R VSE+ ES+GS+S A++C S++ALM AGVPI PVAGIAMGLVK G+ + +LSDI G E Sbjct: 426 RCVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGEHYTVLSDIQGME 485 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT G+TA+QMD+KI G+S +I+ AL QAK GR+HIL M +S SR Sbjct: 486 DHLGDMDFKVAGTAKGVTALQMDIKIDGLSRDILEEALTQAKIGRMHILEHMMSTISASR 545 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L ++ P++ + I PD+IR+VIG GGKVI I+++TG K++ + DGT+ IAS+ A I Sbjct: 546 TSLSQYAPKIVSIKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIYIASADEAMI 605 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+EMI SI +V + Y V ++ FGAF +DGL+HIS++ ER + DV Sbjct: 606 NRAKEMIESIVREAKVGEYYMATVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKEVEDV 665 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K GD + VK ++ D +G++ LS KVV Sbjct: 666 LKLGDELLVKCIEIDKQGRVNLSRKVV 692 >gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus DSM 2926] gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus DSM 2926] Length = 716 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 316/714 (44%), Positives = 464/714 (64%), Gaps = 26/714 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +E+E GR L L TG+IARQS GAV+ YG+T++L+TV + + G DFFPLT Sbjct: 1 MFEEKKMEMEIGGRTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V++ E+ YAVGK PGG+ +RE+RP+ + L +R+IDR IRP+F + + + ++ V + Sbjct: 61 VDFLEKYYAVGKFPGGFHKREARPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +++P + ++ +SAALMLS +PF GPV G V +++LNP E + L+L V+ Sbjct: 121 DGDNTPDYLGIIGSSAALMLSDIPFLGPVAGVVVAMKGEEFILNPTPKELAESPLNLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A+++SE+V+L AI+F H+ K + E + A++ KE +F K Sbjct: 181 GTKDAVNMVEAGASEMSEEVMLKAILFAHDNIKKICEFQEEFARLAGKEKF-----EFVK 235 Query: 240 --LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----- 288 ++E + I E+ L+ + K R ++DL+ ++++ F+ ++ NE Sbjct: 236 PEIDETVQSFIDENGGERLKKAVLAIGKQAREDAVNDLEDELLASFTEKYIQENELEELP 295 Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 GE S + D+ K VR ++ K R+DGR ++ +RD+ A++G L HGS++F RG Sbjct: 296 GEIEGEFKSYYHDLMKKFVREAIVYNKHRVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRG 355 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQAIV TLGT++DEQ VD L+ F +HYNF P + GE M AP RRE+GHG L Sbjct: 356 ETQAIVTTTLGTKQDEQLVDGLNEEYYKKFYLHYNFPPYSVGEARFMRAPGRRELGHGAL 415 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ V+P T FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+ VAGIAM Sbjct: 416 AERALSYVMPSTDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAGVPVKSHVAGIAM 475 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GLVK+GDD+ +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI EN+M +AL+QA Sbjct: 476 GLVKEGDDYAVLTDIMGLEDHLGDMDFKVAGTEAGITALQMDIKITGIDENVMRIALKQA 535 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 RL I+ M + E+ +L PR+ M +P D+I +IG GGK I+ I+E+TGA Sbjct: 536 LDARLQIIGVMKNAI-EAPAELAASAPRIYQMMVPTDKIAALIGPGGKNIKAIIEETGAT 594 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++I+DDG V I S+ +E ++ + E +IY+G+VVKV FGAF+ ++ Sbjct: 595 IDIEDDGKVSIFSNDGETLEKTINLVNNYVKDIEAGEIYQGKVVKVAKFGAFMQILPGKE 654 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 GL+H+S+++ ERVA DV+ GD + VK++ ++ GK+ LS K Q KP+ Sbjct: 655 GLLHVSEIAHERVANVDDVLSVGDILEVKVIS-NENGKVSLSRK---QLIAKPV 704 >gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] Length = 701 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 302/688 (43%), Positives = 456/688 (66%), Gaps = 8/688 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EW GR L++E G++A+Q++GAVL YG+TVVL V + KD DFFPLTVNY+E+ YA Sbjct: 10 EWGGRLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKD-TDFFPLTVNYEEKMYA 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE RP+E+ L +R+IDR IRP+F++ ++NE Q+ VM D P + Sbjct: 69 AGKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M +S AL +S +PF+GP+ G V +NG+YV+NP ++ + S ++L V+GT A+ MV Sbjct: 129 AMFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSDIELSVAGTATAINMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQM 247 E A ++SE+ +L A++FGH E K ++ ++ + KE + + F ++E+++ + Sbjct: 189 ESSAKEVSEEDMLGALLFGHEEIKKLVAFQQQIVQEIGKEKMEVTLLSFDPEIEKQVKDL 248 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEG---EIVSVFEDIQAKV 302 + + + EK R + I+ +K+ + +F + E + G ++ + ++++ Sbjct: 249 FSQAMINAIQTEEKLAREENIEKVKETALEHFEAVLEDNDEKAGLLKQVSQLVDNLEKDE 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ ++KVR DGR + +R +S+++ LL R HGS LF RG TQA+ TL + Q Sbjct: 309 VRRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQV 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + F+ HYNF + G V R G+P RREIGHG L RA+ V+P FPYT Sbjct: 369 IDGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPTPEDFPYT 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GSSS A++C +LALM AGVPI PVAGIAMGL+ DG ++ +L+DI G Sbjct: 429 IRLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLTDIQGL 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+ AL QAK+ R IL E++ ++E Sbjct: 489 EDHLGDMDFKVAGTTTGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEP 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P++E+++I PD+I+ VIG GG+ I I+++TG K++ID +G V IAS+ A Sbjct: 549 RKELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHVSIASTDAAM 608 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+ A+E+I +T EV ++Y+G V ++ FGAFV +DGLVHIS+L+ ERVAK D Sbjct: 609 IQRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELAHERVAKVED 668 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK+ + D +G+I LS K + Sbjct: 669 VLAIGDKVKVKVTEIDGQGRINLSRKAL 696 >gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,501] gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,501] Length = 708 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 301/702 (42%), Positives = 457/702 (65%), Gaps = 8/702 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V + KD DFFPLT Sbjct: 1 MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+++RE RP+ L +R+IDR IRP+F++ ++NE QV VM Sbjct: 60 INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + SP + +M+ +S AL +S +PF+GP+ G +V +NG+YVLNP +++ +Q ++L V+ Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ A+ MVE A ++SE +L A++FG + K ++ ++ + KE + + + Sbjct: 180 GTKQAINMVESGAKEVSEKDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R I+ +K + ++ + + + E+ Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V LL R HGS LF RG TQA+ T Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG I GI+++TG K++ID DG V Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS+ I+ A ++I +T +V ++Y G+VV++ FGAFV+ +DGLVHISQL+ Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +RV K DVVK GD + VK+ + D +G++ LS K + G Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701 >gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides DSM 17374] gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides DSM 17374] Length = 705 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 314/698 (44%), Positives = 461/698 (66%), Gaps = 17/698 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDV V ++ L ETG+IA+Q++G++ A+Y + ++ATV + + D+ PL+ Sbjct: 1 MFDVKKVSVKIGDGELVFETGKIAKQANGSIYASYEGSAIIATVCCGAAPSEPLDYVPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K + E Q++ V+ Sbjct: 61 VEYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQIVPTVVSS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D + P ++++ AASAA+M+S +PF GP+ ++ ++G Y++NP + Q LD+ VS Sbjct: 121 DQANQPDIIAINAASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDF 237 GT+D + MVE A ++SE+V+L AI + +A +L K+ KE PI+ ++D Sbjct: 181 GTRDGITMVEGGAKEVSEEVMLKAIAAAQPVITALCDAQIELQKIVGKEKLPIIQINRDL 240 Query: 238 SKL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIV 292 S L ++ E F+ K R +D +K + + F+ S GE+ Sbjct: 241 SWLGPIRAAAYPLVAE----KSFVKGKSNRYDALDAVKSDIKAQFAEVIGEDSKRSGEVD 296 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S+FED++ +++R +LD VR DGR + +R I+ +VGLL THGS+LF RG+TQ++ V Sbjct: 297 SLFEDLEYEILRKSILDNGVRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVT 356 Query: 353 TLGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT DEQ D++ G + + FM+HYNF P + GE R+ + RREIGHG LA+RA+ Sbjct: 357 TLGTASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGETGRL-STGRREIGHGHLAQRALQA 415 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 ++P +FPYT+R+VSEI ES+GSSSMA+VCG L+LMDAGVPI KPVAGIAMGL+ +G+ Sbjct: 416 IVPPKEKFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGE 475 Query: 472 DF---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D+ ++LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G++ IM AL QAKRGR Sbjct: 476 DYARYVVLSDILGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGVTPEIMSKALDQAKRGR 535 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL+ M K L R ++ E+ P++ + + D+I +IG GGK I+ I Q+GA++NID Sbjct: 536 LHILDVMGKTLKTPRAEVSEYAPKILTIKVDEDKIGAIIGTGGKTIKSIALQSGAEINID 595 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV I + + A+E+++SI + PEV +IY+G V ++MDFGAF+ ++GL H Sbjct: 596 DDGTVTIYGRNSKSAQTAKELVQSIVEEPEVGRIYQGTVKRIMDFGAFIEILPGKEGLCH 655 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 IS+L+ RV DV+ G +V VKL++ D G++ LS Sbjct: 656 ISKLAKTRVNNVGDVLSLGQSVPVKLIEVDRMGRLNLS 693 >gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi] gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi] Length = 757 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 322/699 (46%), Positives = 454/699 (64%), Gaps = 8/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + IEW GR L LETG+IARQ+ G+V+ YG+T VL TVV + ++ DF PL Sbjct: 1 MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKK-EENVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFV 178 D + P V +++ A AAL +SG+PF + G V N Y+LNP + E SLDLF+ Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ V +AI FGH KPVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + K D + K R + ++ +++ +++ + + +E I ++ Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+DGR + +R I +V +L +THGS+LF RG+TQA+VV LGT + Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF A GE S AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+KD D+++ILSD Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED+LG MDFKVAGT G+TA+QMDMKI GIS I+ +L+QAK GRLHIL +M+ V Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE + + PR+ I D+I IG GK IR + E++ AK+ I DDG V + ++ Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596 Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S E E A+ MI SIT++ E I +VV++ + F R G +HIS+++ E + Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V+K+ DT ++DF+ G KLS + VDQ TG+ Sbjct: 656 DSIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694 >gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 757 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 322/699 (46%), Positives = 454/699 (64%), Gaps = 8/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + IEW GR L LETG+IARQ+ G+V+ YG+T VL TVV + ++ DF PL Sbjct: 1 MFKIIKKSIEWGGRALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFV 178 D + P V +++ A AAL +SG+PF + G V N Y+LNP + E SLDLF+ Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ V +AI FGH KPVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + K D + K R + ++ +++ +++ + + +E I ++ Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+DGR + +R I +V +L +THGS+LF RG+TQA+VV LGT + Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF A GE S AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+KD D+++ILSD Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED+LG MDFKVAGT G+TA+QMDMKI GIS I+ +L+QAK GRLHIL +M+ V Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE + + PR+ I D+I IG GK IR + E++ AK+ I DDG V + ++ Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596 Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S E E A+ MI SIT++ E I +VV++ + F R G +HIS+++ E + Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V+K+ DT ++DF+ G KLS + VDQ TG+ Sbjct: 656 DSIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694 >gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 697 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 313/688 (45%), Positives = 459/688 (66%), Gaps = 9/688 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWA R L +ETG++A+Q++GAVL YG+TVVL+T V + +DG DFFPL VNY+E+ YA Sbjct: 11 EWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP++ L +R+IDR IRPLF K YK + Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G +V YI+G+YV+NP + + + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH+E + ++ ++ K+ V KD L E++ Q Sbjct: 190 EAGASEITESEMLEAIFFGHSEIQRLVNFQQEIVDHIQPKKKAFVPVEKD-EVLVEKVKQ 248 Query: 247 MIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302 + +E+ L+ + +K R +D LK+K+ + F E + NE E+ S+ D+ + Sbjct: 249 LTQENGLKDAVLTFDKQQRDINLDALKEKVAAEFIDEEDADNEVLIKEVNSILNDLVKEE 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+ + Q Sbjct: 309 VRRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQI 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L ++ FM HYNF + GE + +P RREIGHG L RA+ ++P FPYT Sbjct: 369 LDGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDLKDFPYT 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G Sbjct: 429 VRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGM 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKVAGT GITA+QMD+KI G+++ I+ AL QA+ GRL IL+ M + + S Sbjct: 489 EDALGDMDFKVAGTAEGITAIQMDIKIDGLTKEIIKEALDQAREGRLAILDHMLQTIDTS 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L F P+V M I P++IR+VIG GGK I I+++TG K++I+ DGT+ I + Sbjct: 549 RSELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDKDA 608 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I AR +I IT EV ++Y+G+V ++ +GAFV +D LVHISQ++ ER+ K D Sbjct: 609 IARARSIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANERIDKVED 668 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+K GD +K+ + D +G++ S K + Sbjct: 669 VLKVGDIFKIKVTEIDKQGRVNASHKAL 696 >gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 712 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 309/692 (44%), Positives = 460/692 (66%), Gaps = 18/692 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + V +E GRPL+ +TG++A+Q+DGAV+ + G+T+VL T V ++G DFFPL V Y Sbjct: 3 ISEVAVEVGGRPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YA GKIPGG+++RE +PT+ E+L SR+IDRSIRP+F K ++N+ QV+ V+ D E Sbjct: 63 RERAYAAGKIPGGFVKREGKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P V+++ ASAAL +S +PFE PV +V +NG+ V+NP ++ Q + ++L VSGT+ Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNADINLVVSGTE 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDF 237 DAV+MVE A ++ E+ +LDAI H E K I A +L + KE +D + Sbjct: 183 DAVVMVEGGAKEVPEEEILDAIELAHEEIKKSIRAQQELRDLAGKEKYEFIAPSLDEETK 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHSSWNEGEIVSV 294 +K+E+ + + I+ + +S +K+ R +++ +L++ M ++ E S E Sbjct: 243 AKIEKWVFERIEPVITIS----DKHERREKLRELRELMFIELNIPEEEQSLAKEA----- 293 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F + + K VR ++L++ +R+DGR +R I+ +VGLL R HGS+LF RG TQA+V TL Sbjct: 294 FAEAEKKFVRQLVLERGIRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTL 353 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT E+ Q V+ L ++ FM+HYNF P GEV+ + P RREIGHG LA RA+ PV+P Sbjct: 354 GTPEEYQLVEGLMPEEQKRFMLHYNFPPFCVGEVAPLRGPGRREIGHGALAERALAPVIP 413 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + +FPY +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI VAGIAMGL+ +GD F+ Sbjct: 414 EEDEFPYVIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLILEGDKFV 473 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKVAGT G+TA+QMD+K+ GIS +I++ AL+QA+ GR++IL++ Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISRDILMTALKQAREGRMYILDK 533 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M V+S R + + PR+ I P++ R++IG GK I+ I+++ G K+ I +DGTV Sbjct: 534 MDAVISSPREGISPYAPRIVSTKIDPEKTRDLIGPSGKTIKAIIDKAGVKITIKEDGTVL 593 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ S A +MI +T E+ Y G+V +V ++GAFV + GL+HIS+L Sbjct: 594 VSAPSEDAAAQAIKMIEDVTKDLEIGNTYLGKVTRVENYGAFVELAPGKIGLIHISKLPP 653 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 E + +K D + VK+++FD G+ KLS Sbjct: 654 EMRENIFESIKVSDIIPVKIIEFDQMGRPKLS 685 >gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008] gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008] Length = 689 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 307/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ ING++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE A ++ ED++L+ I+ H E K ++ + KE V + KD ++ + + Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPVEISDAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V+T+ ++Q +D Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L ++ HYNF + GE P RREIGHG LA RA+ PV+P FPY LR+ Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+E+I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister microaerophilus UPII 345-E] gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister microaerophilus UPII 345-E] Length = 697 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 296/697 (42%), Positives = 469/697 (67%), Gaps = 11/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++E AGRPL +ETG++A+Q+ G+VL YG+TVVL + + ++G DFFPLT Sbjct: 1 MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ Y+VGK+PGG+LRRE RP + +L +R+IDR IRPLF K +++ V+ V+ Sbjct: 59 VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +++P + ++ ASA++ +S +P++GPV G +V ++G++V+NP ++ ++ ++++ V+ Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G++ A+LMVE A + SE+ VLDAI++ H K ++E K+ + K+ F++ Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQK---KELVFAE 235 Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + EE+ + I E +LR + F P+K R +++++K+ ++F + NE ++++ Sbjct: 236 IPEEIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCL 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + +VR ++ K+R DGR + +R I+ +VG++ RTHGS+LF RG TQA+ + TL Sbjct: 295 DHLTKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLA 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ ++ YNF GE P RREIGHG LA RA+ PV+P Sbjct: 355 PMNETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPS 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI PVAGIAMGLV +G+ F I Sbjct: 415 VDEFPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTI 474 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT GITA+QMD+KI G+S I++ AL+QA +GR+ IL ++ Sbjct: 475 LTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKI 534 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ +S+ L + P++ + IP D+IR+VIG GGK I I+ +TG K+++++DG V I Sbjct: 535 AECISKPAEHLSPYAPKIITLTIPVDKIRDVIGTGGKTINKIITETGVKMDVEEDGRVYI 594 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS + A++M+ S+T + ++Y G+V ++M FG FV ++G+VHISQL+ + Sbjct: 595 ASVDEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALK 654 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 RV K DVV EGD + VK+++ DD+G+I LS K + Q Sbjct: 655 RVEKVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQ 691 >gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens ATCC 49175] gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens ATCC 49175] Length = 703 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 300/687 (43%), Positives = 451/687 (65%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 W GR L++E G++A+Q++GAVL YG+TVVL V + KD DFFPLTVNY+E+ YA Sbjct: 11 WGGRQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKD-TDFFPLTVNYEEKMYAA 69 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GKIPGG+++RE RP+E+ L +R+IDR IRP+F++ ++NE Q+ VM D P + + Sbjct: 70 GKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMAA 129 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G V +NG+YV+NP ++ D ++L V+GT A+ MVE Sbjct: 130 MFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSDIELSVAGTATAINMVE 189 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMI 248 A +++E+ +L A++FGH E K ++ ++ + KE + + F +E ++ + Sbjct: 190 SSAKEVNEEDMLGALLFGHEEIKKLVAFQEEIVREVGKEKMEVTLLSFDPAIEAQVKDLF 249 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEG---EIVSVFEDIQAKVV 303 + + + EK R I+ +K+ + +F + E + G ++ + ++++ V Sbjct: 250 SQAMVHAIQTQEKLAREANIEKVKETAIEHFEAVLEENDEKAGLLKQVSQLVDNLEKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ ++KVR DGR + +R +S+++ LL R HGS LF RG TQA+ TL + Q + Sbjct: 310 RRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + F+ HYNF + G V R G+P RREIGHG L RA+ V+P FPYT+ Sbjct: 370 DGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPSPEDFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ ES+GSSS A++C +LALM AGVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 430 RLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLE 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R IL E++ ++E R Sbjct: 490 DHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + P++E+++I PD+I+ VIG GG+ I I+++TG K++ID +G V IAS+ A I Sbjct: 550 KELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHVSIASTDAAMI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+E+I +T EV ++Y+G V ++ FGAFV +DGLVHIS+L+ ERV K DV Sbjct: 610 QRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELAHERVGKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GD V VK+++ D +G+I LS KV+ Sbjct: 670 LALGDKVTVKVIEIDGQGRINLSRKVL 696 >gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC 11563] gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC 11563] Length = 702 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 306/701 (43%), Positives = 455/701 (64%), Gaps = 11/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + ++ WAGRPL +E G++A+Q++ AVL YG+TVVL VV + K GQDFFPL Sbjct: 1 MEEKQVFKMNWAGRPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQ 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGKIPGGY++RE RP+E+ L +R+IDR IRP+F + + NE QVI V+ Sbjct: 61 VNYEEKMYSVGKIPGGYIKREGRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D + SP + +M +SAAL +S +PF+GP+ G V +NG +V+NP +++ Q L+L V+ Sbjct: 121 DPDCSPEMAAMFGSSAALTISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSDLELIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237 G++DA+ MVE A +LSE +L+A++FGH + + ++ + +E + +++ D Sbjct: 181 GSKDAINMVESSAAELSETEMLEALMFGHTSIRELCYFQDEIREKIGQEKMDVQLNTPD- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIV 292 + L E++ + + + +K R + I+ +K ++ ++S ++ + ++ Sbjct: 240 NVLVAEVTAQYNQQMVEAIQTFDKLEREENIEAVKAAIIDHYSELYAEHEDVVTLMDQVR 299 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + ++ K VR ++ D KVR DGR + +R ++++VGLL RTHGS LF RG TQA+ V Sbjct: 300 QIANQLEYKEVRRLITDDKVRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVA 359 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TL +EQ +D L+G FM HYNF + G R G+P RREIGHG L RA++ V Sbjct: 360 TLAPLSEEQRIDGLAGDVTQRFMHHYNFPQYSVGSTGRYGSPGRREIGHGALGYRALNEV 419 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 LP FPY +R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGL+ D D Sbjct: 420 LPSEEDFPYAIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDEDE 479 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 ++ +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI+E I+ AL QA + R+ Sbjct: 480 ENYTVLTDIQGLEDHLGDMDFKVAGTENGITALQMDIKIKGITEQILREALDQAHKARVE 539 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL ++ + R +L + P++E M I PD I+ VIG GG I I+++TG K++ID + Sbjct: 540 ILGHLATAIDAPRAELSPYAPKIEQMQIDPDDIKVVIGKGGDTINKIIDETGVKIDIDQE 599 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V IAS + A I+ A+E+I +T + ++Y G V ++ FGAFV +DGLVHIS Sbjct: 600 GGVNIASDNAAMIKRAKEIIAELTLKVQAGEVYVGTVKRIEKFGAFVEIAKGKDGLVHIS 659 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 QL ER DVV + V VK+ + D+RG+I L+MK +D Sbjct: 660 QLQEERTNNVEDVVSMDEKVRVKVTEIDNRGRINLTMKGLD 700 >gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 706 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 307/700 (43%), Positives = 454/700 (64%), Gaps = 10/700 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + ++ WAGRPL++E G++A+Q++ A L YG+TVVL VV + K+GQDFFPLT Sbjct: 1 MSEKQVFKMNWAGRPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YA GKIPGG+++RE RPTE+ L +R+IDR IRP+F + +KNE QVI VM Sbjct: 61 VNYEEKQYAAGKIPGGFIKREGRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 D + SP + +M+ +S AL +S +PF+GP+ G V ++G V+NP LD+ Q L+L V+ Sbjct: 121 DNDCSPEMAAMLGSSVALTISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSDLELTVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GTQ A+ MVE A +LSE+ +L+A++FGH K + ++ + +E + +++ F Sbjct: 181 GTQTAINMVESSAQELSEEEMLEALMFGHANIKELCYFQEEIRQAVGQEKMPFEAEAFVP 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293 + E E+ + + + I +K R + + +K +M+ ++ S E +IV+ Sbjct: 241 ETEAEVYTRYHQKMVDAIQIFDKLEREEGVQAVKDEMIEFYDSQFLDDEDFVAKHNQIVA 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + + ++ VR ++ + KVR DGR + +R +S++VGLL R HGS LF RG TQ + T Sbjct: 301 LADKLEYDEVRRLITEDKVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D +S F+ HYNF + G R G+P RREIGHG L RA+ V+ Sbjct: 361 LAPLSEYQPLDGISPETERHFIHHYNFPQYSVGSTGRYGSPGRREIGHGELGHRALQRVI 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472 P +FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGL+ D +D Sbjct: 421 PSQEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDQEDN 480 Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E+I+ +L QAK R+ Sbjct: 481 NKYTILTDIQGLEDHLGDMDFKVAGTRQGITALQMDIKIKGITEDILRESLAQAKVARMQ 540 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 +L+ + L R L + P+++++ I P++I VIG GG+ I I+E TG K++IDDD Sbjct: 541 LLDHLQGTLDAPRDHLSPYAPKIKMIQIKPEKIGEVIGKGGETIDKIIEATGVKIDIDDD 600 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V I+SS I+ A E+I +T EV +++ G V ++ FGAFV ++G+VHIS Sbjct: 601 GQVSISSSDENMIDKAIEIIEELTLEIEVGQVFTGTVTRIEKFGAFVQLTPKQNGMVHIS 660 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +L +R K DVV+ GD V VK+++ D+RG+I LSMK + Sbjct: 661 ELQHKRTNKVEDVVQIGDQVKVKVIEVDNRGRINLSMKAL 700 >gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] Length = 689 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 307/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ ING++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ ED++L+ I+ H E K ++ + KE V + KD +++ + + Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ ++Q +D Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L ++ HYNF + GE P RREIGHG LA RA+ PV+P FPY LR+ Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+E+I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei YIT 12066] gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei YIT 12066] Length = 720 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 333/702 (47%), Positives = 461/702 (65%), Gaps = 25/702 (3%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQ 64 T ++ + LETG I RQ+D AV+A+ +T V ATVV +R + +G+DFFPLTVNYQ Sbjct: 7 TRTFKYGRHTITLETGAIGRQADSAVMASMDDTTVFATVVCNRREQVEGRDFFPLTVNYQ 66 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER+YAVG+IP + RRE R +E E LISR+IDR +RPLF + NE QV++ VM + E Sbjct: 67 ERSYAVGRIPVSFFRREGRASEGETLISRLIDRPLRPLFPDGFVNEVQVVVTVMSANPEI 126 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 ++S++AASAAL SGLP+ GP+ A+V YINGQYVLNP E + S LDL V+G+ Sbjct: 127 PTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETEESDLDLVVAGSDK 186 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--------AKEPIVIDSK 235 AV+MVE EA L EDV+L A+++GH + + VI I + AK A EP D + Sbjct: 187 AVVMVESEAKILPEDVMLGAVMYGHEQQQVVINEIKEFAKEVNRPVWDWKAPEP---DYE 243 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVS 293 + ++ + ++ + E R I +K R + ++ + + ++ W E EI Sbjct: 244 LINAVKADAAEKVGEAFR----IVDKLERQNTLSTIEAETIEKVKAQKEEWAEKDQEIAK 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +F D++ +VR +L + R+DGR +R I+ G+L R HGS+LF RG+TQAI T Sbjct: 300 IFFDLERDIVRERILSGEKRIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ D Q + +SGT+ + F++HYNF P GE +G+P RREIGHGRLA+RA+ VL Sbjct: 360 LGSERDAQTFEDMSGTRSDRFILHYNFPPYCVGETGLIGSPKRREIGHGRLAKRALRAVL 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R+VSEITES+GSSSMA+VCG SLAL DAGVP VAGIAMGLVK+GD Sbjct: 420 PDMERFPYTIRVVSEITESNGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRV 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI GDEDHLG MDFKVAGT G+TA+QMD+K GI+ IM AL A RLH+L Sbjct: 480 AVLTDIMGDEDHLGDMDFKVAGTTEGVTALQMDIKTDGITREIMQQALTDAHAARLHLLK 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + L R L + PR+ + +PPD+++ +IG GG IR I T ++I+DDGTV Sbjct: 540 IMGRALPNPRQNLSPYAPRIVTIQVPPDKVKEIIGKGGFNIRAIQTATNTSIDIEDDGTV 599 Query: 594 KIASSSLAEIEAAREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 +I++++ A AA ++I I D+ EV +IY+G+VV++ DFGAFV+ RDGLVHIS Sbjct: 600 RISANTAA---AADQVIARINDLLVEVEVGRIYEGKVVRITDFGAFVNILPGRDGLVHIS 656 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 Q+ ERV +D ++ GD V VK+LD D+ G+I+LS+K V++ Sbjct: 657 QIVDERVDNVNDYLRVGDIVKVKVLDLDNTGRIRLSIKAVNE 698 >gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC 35580] gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC 35580] Length = 703 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 297/682 (43%), Positives = 457/682 (67%), Gaps = 20/682 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GA+ A YG T VLATV + +G D+ P+TV+Y E+ YA GKIPG Sbjct: 19 LILETGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYNEKYYAAGKIPG 78 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RP + EIL+SR+IDR +RPLF K + E Q++ + D+ + P +++++A+S Sbjct: 79 GFIKREGRPKDKEILVSRLIDRPMRPLFEKAFGREIQIVPTCISSDMINPPDILAVIASS 138 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AA+++S +PF GPV GA+V Y++G++V+NP + ++ +++ V+GT + + MVE A++ Sbjct: 139 AAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVAGTAEGITMVEGGAHE 198 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-------VIDSKD--FSKLEEEMS 245 +SE+++L A+ H K + ++L C KE + + +KD ++K E+S Sbjct: 199 VSEEIMLKALEKAHEFIKAMCALQNELRAACGKEKLPLAPVNATLANKDAIYAKAYPELS 258 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI-VSVFEDIQAKVVR 304 + + + K R + D ++K + ++ + + + ++ ++F+D++ ++R Sbjct: 259 KAL--------YTKGKVERREACDAIRKALAEEYAEQLADETQAKLFAALFDDMEYHILR 310 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +L+K +R+DGR E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT DEQ D Sbjct: 311 ENILEKGLRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYD 370 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 + G +R +F++HYNF P + GEV R+G RREIGHG LA R++ P++P FPYT+R Sbjct: 371 DIEGDRRENFILHYNFPPYSVGEVGRLGT-GRREIGHGHLAHRSLMPMIPSREAFPYTIR 429 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEI ES+GSSSMATVCG +L+L+ AGVP+ KPVAGIAMGL+ DG F +LSDI G+ED Sbjct: 430 VVSEILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAVLSDILGEED 489 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT GIT QMD+KI G+S IM AL+QAK+GRLHIL M++ +S+ Sbjct: 490 HLGDMDFKVAGTAEGITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQTISKPSE 549 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 Q+ ++ PR+E + IP D+I +IG GGK+I+ + EQ +N ++DGTV I + Sbjct: 550 QVSKYAPRIETLKIPVDKIGALIGPGGKIIKALSEQYHVTINTENDGTVTIYGRDSSSAI 609 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+ + I + PEV +IY+G V + DFGAF+ ++GL HIS+LS R+ K +DV+ Sbjct: 610 GAKAAVIGIVEDPEVGRIYEGTVKCIKDFGAFIEILPGKEGLCHISKLSRNRIEKVTDVL 669 Query: 665 KEGDTVWVKLLDFDDRGKIKLS 686 +EG V VKLL+ D G++ LS Sbjct: 670 QEGQKVPVKLLEIDKLGRLNLS 691 >gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris vibrioformis DSM 265] gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 732 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 325/709 (45%), Positives = 461/709 (65%), Gaps = 25/709 (3%) Query: 6 TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNY 63 T EI+ G+ + +ETGR+A+Q+DGA + G+T+V+ATVV + QDFFPL V Y Sbjct: 4 TKEIDLGQGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQVEY 63 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GK PGG+ +RE+RP+E EIL +R+IDR++RPLF Y ETQVIINV+ D + Sbjct: 64 REKYYAAGKFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYYETQVIINVISSDQQ 123 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + V+ +AASAA+M+S +PFE + +V +NGQ+++NP +DE +GS +D+ + GT Sbjct: 124 NDADVLGGLAASAAIMVSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDIDISIGGTA 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 + M+E E ++SE +L+AI FGH K + + AK P+ + S+ Sbjct: 184 GTICMLEGEMKEISEAEMLEAIRFGHEAIKKLCALQDSVQAAVAKAKRPFAPLQVPSELG 243 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFSSEHSS----------- 285 + + + +KE + E+ R K+I + K V +FS+ SS Sbjct: 244 AFISDACKARLKELAYTALAKEERAERTKEIYGETLKSAVEHFSAAFSSEDLAADPSKAL 303 Query: 286 -WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 NE I ++ V+R ++LD R+DGR + VR IS +G++ R HGS+LF RG Sbjct: 304 CTNEHIIEEEIHSVEKDVMRRMILDDAKRLDGRTLDQVRPISIDLGVIPRAHGSALFTRG 363 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQA+V VTLGT++D Q VD+L+ + FM+HYNF P + GEV R+G RREIGHG L Sbjct: 364 ETQALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGTTGRREIGHGNL 423 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RAI V P +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ K V+GIAM Sbjct: 424 AERAIRMVAPTEQEFPYTIRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAM 483 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+K+G ++ +LSDI G+EDHLG MDFKV+GT GITA QMD+KI G+ +I+ AL+QA Sbjct: 484 GLIKEGSEYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQA 543 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 +RGR HIL++M + + SR L + PR+ + +P + I +IG GG+ IR I E+TGA+ Sbjct: 544 RRGRFHILDKMEEAIPASREDLAHYAPRLTAIQVPVESIGLIIGKGGETIRSITEETGAE 603 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGAR 643 +NI+DDGTV IA SS + A E+I+++ PEV +Y G+V + D GAFV F Sbjct: 604 INIEDDGTVTIACSSNEGTKGAVEIIKALIAKPEVGTVYIGKVRDIRDELGAFVEFIPKT 663 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689 DGLVHIS+++ ERVAK SD +K G+ V VKL+D D R GK + ++ + Sbjct: 664 DGLVHISEIANERVAKVSDHLKVGERVKVKLVDIRKDPRTGKTRFALSI 712 >gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0411] gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0411] Length = 704 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 303/697 (43%), Positives = 457/697 (65%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + W GRPL++E G++A+Q++GAVL YG+TVVL+ V ++ KD DFFPLT Sbjct: 1 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKD-VDFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ YAVGKIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM Sbjct: 60 VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 + + +P + +M +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+ Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT++A+ MVE A ++SE+ +L A++FG + K ++ ++ K + +D + Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 L++E+ ++ + EK R +ID +K + ++ + + E E+ Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ED++ VVR ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V T Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L F+ HYNF + G R G+P RREIGHG L RA+ ++ Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++ID DG V Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I+ A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK GD V VK+ + D +G++ +S K + Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696 >gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense DSM 12168] gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense DSM 12168] Length = 699 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 314/704 (44%), Positives = 466/704 (66%), Gaps = 21/704 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V V + + L LETGR+A+Q++GAV A +G + V+AT + ++G DF P+TV+Y Sbjct: 2 VQRVTYKIGDQELILETGRLAKQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF + E Q++ + D Sbjct: 62 NEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTCVSSDQI 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P ++++VA+SAA+++S +PF GP+ G +V Y++G YVLNP + ++ L++ V+GT Sbjct: 122 NPPDMLAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAELEIVVAGTA 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-------IVIDSK 235 D MVE AN++SEDV+L A+ + ++L K+ KE + +++K Sbjct: 182 DGFTMVEGGANEVSEDVMLGALAKAQEFITAMCGLQNELRKLAGKEKLPLCPVTVALENK 241 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SV 294 D + L E M +M +CF+ K++R + I +K + + ++++ + + ++ ++ Sbjct: 242 D-AMLAEAMPRM-----EEACFVKGKHLRHEAIAAVKADLSAKYAAQLENETQMKLFNAL 295 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 FED++ ++R +LDK VR+DGR +E +R IS ++ +L R HGS++F RG+TQ++ V TL Sbjct: 296 FEDMEYNILRKSILDKGVRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATL 355 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT DEQ D + G +R F++HYNF P + GEV RMG RREIGHG LARR++ P++P Sbjct: 356 GTALDEQVYDDIDGDRREHFILHYNFPPYSVGEVGRMGT-GRREIGHGNLARRSLEPMVP 414 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF- 473 FPYT+R+VSEI ES+GSSSMA+VCG +L ++ AGVP+ KPVAGIAMGL+ +GD + Sbjct: 415 SREAFPYTIRVVSEIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGDKYE 474 Query: 474 --IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ILSDI G+EDHLG MDFKVAGT GIT QMD+KI G++ IM AL QAKRGRLHI Sbjct: 475 KYAILSDILGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVTTEIMQKALAQAKRGRLHI 534 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L M++ +S+ ++ E+ P++E M I D+I +IG GGK ++GI G +N DDDG Sbjct: 535 LGIMNQTISKPAAKISEYAPKIETMKIDVDKIGALIGPGGKTVKGISALYGVTINTDDDG 594 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV I + +AA+ +++I + PEV +Y+G V ++MDFGAFV ++GL HIS+ Sbjct: 595 TVTIYGKNGKSTDAAKTAVKAIVEDPEVGTVYQGTVKRIMDFGAFVEILPGKEGLCHISK 654 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM--KVVDQN 693 LS +RV K +DVV EG + VKLL+ D G++ LS V DQN Sbjct: 655 LSRKRVEKVTDVVSEGQQIPVKLLEIDKMGRLNLSYIDAVEDQN 698 >gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio fructosovorans JJ] gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio fructosovorans JJ] Length = 751 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 316/706 (44%), Positives = 465/706 (65%), Gaps = 14/706 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 FD ++ G + LETGR+A Q+DGAV G TVVL T + L + + FFPLTV Sbjct: 5 FDPIRLQANIGGNAVILETGRLANQADGAVWVQSGGTVVLVTAC-TQVLPEEKGFFPLTV 63 Query: 62 NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +YQE +YA G+IPG Y RRE RP+E E+L+ R+IDR RPLF K +++E Q+I V+ Sbjct: 64 DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178 D P V+++ AAS+AL +S +PFEGP+ G +V Y++G +V NP + + G +L+L Sbjct: 124 DGVVEPDVLALTAASSALHISKIPFEGPIAGGRVGYVDGAFVFNPTVQQMNGESTLNLVF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI----DS 234 + ++DAV+MVE +SED++ DA+ +GHN +P+I+ +L + K I Sbjct: 184 AASRDAVVMVEGGGQFVSEDMLADALEWGHNSVQPLIDLQEELREKAGKPKIAFVPPTPI 243 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIV 292 ++ KL ++ +KE + +P + R + + +V+ F E + G+I+ Sbjct: 244 EELEKLVHATAEAGLKEAFAIKDKMPRREARKAVKQAVVEAVVAAFPDEPTYKAKAGDIL 303 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ K++RT++ + +R+DGRD++TVR I +VG+L RTHGS++F RG+T+++ V Sbjct: 304 A---DMEKKLLRTLIKETGIRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVA 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ +++L+G FM+HYNF P GEV M PSRREIGHG LA R+I PV Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKPMRGPSRREIGHGALAERSILPV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVP+ +PVAGIAMGL+K+GDD Sbjct: 421 LPGADEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPVKEPVAGIAMGLIKEGDD 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++L+DI GDED +G MDFKVAGT +G+T +QMD+KI GI + +M AL QAK RLHIL Sbjct: 481 FLVLTDILGDEDAMGDMDFKVAGTANGVTGIQMDIKITGIPQAVMRQALSQAKEARLHIL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M++VL+ R +L P++E++ I P++IR VIG GGK I+ I TGA ++I+D G Sbjct: 541 GRMAEVLAAPRAELSPLAPQLEVVNINPEKIREVIGPGGKNIKAITADTGASIDIEDSGK 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + I + +L + A+E + +V YKG V KV+D GA + +GL H+SQL Sbjct: 601 ISIFAPTLDSLAKAKERVLFYDQHADVGANYKGIVRKVIDCGAIIEILPGLEGLCHVSQL 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697 ERVA +DVVK G + VK+L+ + G+I+LS K V+++ G P Sbjct: 661 DVERVASPADVVKLGQEIEVKVLEEEPSGRIRLSRKAVLNEERGIP 706 >gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName: Full=Polynucleotide phosphorylase 3; Short=PNPase 3 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 303/689 (43%), Positives = 439/689 (63%), Gaps = 3/689 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T E++ GRP +E G++A + G+ + YG+T VL T + K+G DFFPL+ +Y Sbjct: 2 VKTFEMKLGGRPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RESRP+E L +R+IDR IRPLF K Y N+ QVI V+ D + Sbjct: 62 EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P + +M+ +S AL +S +PF GP V I+G+Y++NP + + S L+L VSGT+ Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDSTLELIVSGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241 +A++M+E AN+L+E +LDAI+F H E K ++ I + K + +K S L Sbjct: 182 NAIMMIEAGANELTEAQILDAIMFAHEEIKKIVAFIENIVSEVGKPKSEVIAKQMDSNLL 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E+ + L + +K R + I + + + YF ++ ++ E+ + + Sbjct: 242 TEVVIFLDTKLANAIKTFDKTERNENIQAVSAEALDYFEEKYEGRSK-EVHDILSMLIKV 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 R ++ + +R D R + +R IS QVG+L R HG+ LF RG+TQ + + TLG D Q Sbjct: 301 ETRKMITSEGIRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + +M HYNF P + GE M PSRREIGHG L RA+ P++P FPY Sbjct: 361 RIDGIGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALLPMIPSKEDFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +R+VSE+ +GSSS A+VCGS+L+LMDAGVPI + VAGIAMGL+K+ D +ILSDI G Sbjct: 421 AIRLVSEVLTCNGSSSQASVCGSTLSLMDAGVPIKRMVAGIAMGLIKEDDQVVILSDIQG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MD KVAGT+ GITAMQMD+KI GI IM AL+QA+ GRLHILN+M + ++ Sbjct: 481 MEDALGDMDLKVAGTEEGITAMQMDIKIAGIDRGIMETALEQARIGRLHILNKMKESITS 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R++L + P+V + + PD++R VIG GGKVI I+++TG K+ I++DGT+ +A+ Sbjct: 541 PRIELSSYAPKVTQIKVHPDKVREVIGAGGKVINKIIDETGCKITIENDGTIYVAAPDQE 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 A EMI I P V ++Y G+V+K+MDFGAFV ++GLVHIS L+ ERV K + Sbjct: 601 SSRRAVEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVTKVT 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ EGD + VKL++ + +GKI LS K + Sbjct: 661 DVLAEGDLIEVKLMEINPQGKIGLSRKAL 689 >gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] Length = 699 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 315/708 (44%), Positives = 459/708 (64%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N LI+R+IDR IRP+F + + + ++ V+ + Sbjct: 61 VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPEGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+DAV MVE A +L E+ +L AI+F H+ K + E AK+ KE I +F+K Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENI-----EFTK 235 Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290 EE+ ++K+ L+ + K R + +D L++++++ F E + E E Sbjct: 236 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIGENYPDVPEEE 293 Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF Sbjct: 294 LPEDVITEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ++ + TLGT+ DEQ +D L F +HYNF P + GEV RMG+P RRE+GHG Sbjct: 354 RGETQSLAITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 414 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R IL M+ +S+ +L PR++ + IP D+I +IG GGK I+ I++QTG Sbjct: 534 QAHEARQQILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKSIIDQTG 592 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A V+I DDG V + + +E ++I S E N++Y+G+VV +M FGAF+ Sbjct: 593 ATVDITDDGLVSVFAQDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 652 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 653 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus lipocalidus DSM 12680] gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus lipocalidus DSM 12680] Length = 717 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 306/693 (44%), Positives = 462/693 (66%), Gaps = 17/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + E AGRPL++E G++A+Q++GA L YG+TVVL T + ++G DFFPLT +Y+ER Sbjct: 7 QTEIAGRPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTCDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPGG+++RE RPTE IL +R++DR IRPLF K ++N+ V+ VM D ++ P+ Sbjct: 67 YAVGRIPGGFIKREGRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVDQDNPPN 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V +++ AS AL +S +PF GP+ V ++G++V+NP +++ S + L V GT+DA++ Sbjct: 127 VTAIIGASIALSISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQMHLTVGGTRDAIV 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIV--IDSKDFSKLE 241 MVE AN++ E+ +LDAI F H E K +I+ K+ + +E +V ID + + + Sbjct: 187 MVEARANEVPEETMLDAIFFAHEEIKRIIDFQEKIVAEIGLPKREVVVPEIDPEIEAAVR 246 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E +++E +R S +K R + + ++ +F+ + ++ E+ S+ + I + Sbjct: 247 EYGIPILEEAIRCS----DKLQREARTEAAADEIKQHFAEIYPEQDK-EVASIIDKITKE 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +VR ++LD+ +R+DGR +R +S +VG+L RTHGS LF RG TQ + V TLG +EQ Sbjct: 302 IVRRMILDEGIRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEEQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + ++ HYNF P + GE + P RREIGHG LA +A+ VLP +FPY Sbjct: 362 ILDGLGVEESKRYLHHYNFPPYSVGETRPIRGPGRREIGHGALAEKALEAVLPSQEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ ES+GS+SM +VCGS+L+LM AGVPI +PV+GIAMGLVK+GD F +LSDI G Sbjct: 422 TIRVVSEVLESNGSTSMGSVCGSTLSLMHAGVPIKRPVSGIAMGLVKEGDRFAVLSDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAG+ G+TA+QMD+KI G++ I+ AL+QAK GR++I++ M K +S+ Sbjct: 482 IEDALGDMDFKVAGSAEGVTALQMDIKIPGVTREILHAALKQAKEGRMYIMDIMMKAISQ 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 +L + PR+ M I D+IR VIG GGK+I+ I+++TGA+++I+DDG++ I +S Sbjct: 542 PNPELSPYAPRMIRMMIDTDKIRQVIGPGGKIIKKIIDETGARIDIEDDGSLFIVASDQE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLSTE 655 E A+ + +T EV K Y G+VV++ DFGAFV ++GLVHIS+L+ Sbjct: 602 SAEKAKYYVECLTKDVEVGKTYVGKVVRIADFGAFVEIIPGVLGLPGKEGLVHISKLAEN 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RVAK DVV GD + VK+ + D +G+I LS + Sbjct: 662 RVAKVRDVVDIGDEILVKVTEIDSQGRINLSRR 694 >gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera micronuciformis F0359] gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera micronuciformis F0359] Length = 717 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 299/685 (43%), Positives = 452/685 (65%), Gaps = 3/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++++AGRPL +E G++A+QS GA L YG+T V + + ++ DFFPLTV+Y+E+ Sbjct: 7 QMDFAGRPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTVDYEEKM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+++RE +P E+ L +R+IDR IRPLF K Y+++ V+ D +++P Sbjct: 67 YAVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVDHDNAPE 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ AS AL +S +PF GP+ G +V I+G +++NP +++ + S +D+ V+GT+DA+L Sbjct: 127 IAAMIGASVALCMSHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSDMDIVVAGTKDAIL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 MVE A ++ E +LDAI+F H E + V+E +S L ++ + ++ + + + E + Sbjct: 187 MVEGGAKEVPESDILDAIMFAHEEIRKVVEFQLSFLDEISVPKQEFVEKELPADIVEAIH 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + ++ + F +K R ++++ ++ + +F+ + N+ ++ ++ + + ++VR Sbjct: 247 TYGEAKMKEAIFDADKMAREEKMNAVEADIYEHFADIYPD-NQADVATITQKMIKEIVRH 305 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ K+R DGR VR +S +VGL +RTHG+ LF RG TQ + TL + Q++D Sbjct: 306 MIAVDKIRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDG 365 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + +M HYNF + GE P RREIGHG+LA RA+ V+P +FPY +R+ Sbjct: 366 VGTETERRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALTQVMPSEEEFPYAIRV 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSM +VCGS+LALMDAGVPI PV+G+AMGLV DDF IL+DI G ED Sbjct: 426 VSEVLESNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTKDDDFTILTDIQGMEDA 485 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA GRLHI+++M VL R + Sbjct: 486 LGDMDFKVAGTTKGVTAIQMDIKIKGLSREILDTALKQAHEGRLHIMDKMLAVLDAPRKE 545 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L + PR+ M + PD+IR++IG GGK+I+ I E+TGAK++IDD G V IAS Sbjct: 546 LSPYAPRIITMQVHPDKIRDIIGPGGKMIKQITEETGAKIDIDDTGLVYIASVDGEGGAK 605 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+E I ++T EV + Y G+V ++M FGAFV ++GLVHISQL+TERV K DVV Sbjct: 606 AKEWIENLTKDVEVGETYVGKVTRLMAFGAFVEVLPGKEGLVHISQLATERVEKVEDVVN 665 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK ++ D +G+I LS KVV Sbjct: 666 VGDEIVVKCVEIDSQGRINLSRKVV 690 >gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans ATCC 49185] gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 699 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 322/708 (45%), Positives = 454/708 (64%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD VE+E AGR L TG+IARQS GAV+ YGETV+L+TV + + G DFFPLT Sbjct: 1 MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RE RP+ N L +R+IDR IRP+F + + ++ ++ V + Sbjct: 61 VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D +++P + ++ +S ALMLS LPF GPV G V Y +G+++LNP +E + S L+L V+ Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSDLELSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G++DAV MVE A +L E+ +L AI+F H K + + AK+ KE I DF K Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKI-----DFVK 235 Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--- 288 +E+ ++K E L+ + K R + +D L+++++ F E+ E Sbjct: 236 --KEVLPLVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGIEEED 293 Query: 289 ------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 GE + D+ K+VR +L K R+DGR + +R + A+VG+L HGS++F Sbjct: 294 IPEEVIGEFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAEVGVLPIPHGSAMFT 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQA+VV TLGT+EDEQ VD L F +HYNF P + GE RMG+P RRE+GHG Sbjct: 354 RGETQAVVVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 414 SLAERALSYVIPSEESFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+ Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALK 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R IL M+ +S + L PR+ M I D+I +IG GGK I+GI+E+TG Sbjct: 534 QALDARNEILVVMNNAIS-APADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTG 592 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A ++I DDG V I S ++ ++ + EV +IY G+VV + FGAF+ Sbjct: 593 ATIDISDDGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPG 652 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+H+S++S ERVA DV+K GD VK++ ++ GKI LS K + Sbjct: 653 KEGLLHVSEISNERVANVEDVLKVGDRFDVKVISTEN-GKISLSKKKI 699 >gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437] Length = 697 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 314/693 (45%), Positives = 444/693 (64%), Gaps = 4/693 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + E E+AGR L +E G+ A Q++GAVL YG+T V+AT KD FFPLT Sbjct: 1 MMEPTIFETEFAGRRLTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKD-LGFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF + Y+N+ QV+ VM Sbjct: 60 VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + S + +M+ AS AL +S +PF GP+ G V +NG++VLNP +++ + S L L V+ Sbjct: 120 DQDCSTEIAAMIGASTALSISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSDLHLVVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 GT+ + MVE A+++ E+V+L+ I+FGH K +I K+ KE + D S Sbjct: 180 GTKHGINMVEAGADEVPEEVMLEGILFGHEAIKEMIAFQEKIVGQVGKEKMEPDLHQVDS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297 +LE + ++ + + + EK R I+ +++ ++ + E ++ EI V + Sbjct: 240 ELERRVRELSTAPMAKAAQVGEKQERQDAINQVRESVLQQLAGEDPEADQTKEIEEVLDT 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + + VR ++L++K R DGR E +R ++++VG+L RTHGS F RG TQ + V TLG Sbjct: 300 VLKEEVRRMILEEKKRPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGAL 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + FM HYNF P + GE M P RREIGHG L RA+ PV+P Sbjct: 360 GDVQILDGLDLEESKRFMHHYNFPPYSVGESRPMRGPGRREIGHGALGERALEPVIPSEE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSE+ ES+GS+S A++C S+LALMDAGVPI PVAGIAMGLVK+GD +L+ Sbjct: 420 EFPYTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKDPVAGIAMGLVKEGDQVTVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDHLG MDFKVAGT G+TA+QMD+KI I ++ ALQQA R R +L+ M+ Sbjct: 480 DIQGMEDHLGDMDFKVAGTRKGVTALQMDIKIEEIDREVLSQALQQAHRARHVLLDNMTA 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L E R +L P++ + I PD+IR VIG G+VI I+++TG K++I+ DG + IAS Sbjct: 540 TLGEPRRELSPHAPKILTLKIHPDKIREVIGPSGRVINKIIDETGVKIDIEQDGRIFIAS 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A+ E A+ +I + V +IY G V +V +GAFV ++GLVHISQL ERV Sbjct: 600 ADPAQNEKAKSIIEDLVREVVVGEIYIGTVKRVEKYGAFVEILPGKEGLVHISQLDKERV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K SDVV GD + VK+ + D++G+I LS K + Sbjct: 660 NKVSDVVNLGDQIQVKVTEIDNQGRINLSRKAI 692 >gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 689 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 306/683 (44%), Positives = 451/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ ING++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ ED++L+ I+ H E K ++ + KE V + KD +++ + + Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ ++Q +D Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L ++ HYNF + GE P RREIGHG LA RA+ PV+P FPY LR+ Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+E+I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] Length = 703 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 5 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 65 VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + AK+ KE I + + Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244 Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 L + + E L+ + K R + +D L+++++ F+ E + E E+ Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELIERFTQENYPDVPEEELPEDIIL 304 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GK I+GI++QTG+ V+I D Sbjct: 545 EILELMNNTISKPA-KLKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I S E ++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703 >gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] Length = 713 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 309/693 (44%), Positives = 449/693 (64%), Gaps = 11/693 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ GR + +ETG IA+Q+DGAV+ YG+TV L+T K+G DFFPLTV+++E+ Y Sbjct: 8 LDFCGRGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLY 67 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+LRRE RP+E+ L +RMIDR IRPLF++ ++NE QV+ V+ D ++SP + Sbjct: 68 SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPEM 127 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M AS AL +S +PF GP+ G +V ING+ V NP + + ++ +DL V+GT A+ M Sbjct: 128 AAMFGASLALCISDIPFNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVAGTAQALNM 187 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A ++SE+ +L A++FGH + K + ++ C KE I+ + ++ E+ Sbjct: 188 VEAGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVAACGKEKREIELYAVDETIDREVRS 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE-----GEIVSVFEDIQA 300 + +R + I EK R +IDDL + ++ E++S E + + I+A Sbjct: 248 NFEAQIRAAVSIKEKLERYGKIDDLTDEAAEMIANKEYASEKEQNNAVKQAREICRGIEA 307 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++++ KVR DGR + +R +++QV LL R HGS+LF RG+TQ + TLG D Sbjct: 308 DEVRRLIIEDKVRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDN 367 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ FM HYNF P GE RMG P RREIGHG L RA+ VLP +FP Sbjct: 368 QIIDDLTVVDSKRFMHHYNFPPYCVGETGRMGNPGRREIGHGALGERALAQVLPSVDEFP 427 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSD 478 YT+R V+++ ES+GSSS A++C +++LM AGVPI PVAGIAMGL+ D D + +L+D Sbjct: 428 YTIRTVADVMESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDDDSGKYTVLTD 487 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT +GITA+QMD+K+ GI++NI AL QA + RL IL+ M Sbjct: 488 IQGMEDHFGDMDFKVAGTKNGITALQMDIKVTGITKNIFEEALAQAHKARLEILDNMLAC 547 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIAS 597 +SE R QL + P++ +M I PD+I++VIG GGK+I I+ Q K++IDDDG V I Sbjct: 548 ISEPRTQLSPYAPKIAMMNIDPDKIKDVIGPGGKMINEIIAQCDNVKIDIDDDGKVVIYH 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + IE A++MI I V +V +Y +VV++ FGAFV+ G DGL+HIS++S RV Sbjct: 608 NDYDTIEKAKQMISDIVRVAKVGDVYAAKVVRLEKFGAFVNLFGNTDGLLHISKISHHRV 667 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DV+K GD + VK+ + D++G+I +S K + Sbjct: 668 DKVEDVLKLGDVIDVKVTEIDNKGRINVSAKAL 700 >gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium chlorochromatii CaD3] gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3] Length = 728 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 332/710 (46%), Positives = 465/710 (65%), Gaps = 34/710 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71 GR L +ETG++A+Q+DGA + G+T+VLATVV + GQDFFPL V Y+E+ A G Sbjct: 12 GRILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 + PGG+ +RE RP+E EIL +R+IDR++RPLF Y ETQ+II+V+ D + V+ Sbjct: 72 RFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVISSDQVNDGDVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF+ P+ +V +NG Y++NP ++E + +D+ + GT D + M+E Sbjct: 132 LAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDMCIGGTNDTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245 E N++SE +L+AI FGH + + ++A AK P VI ++ L+ + Sbjct: 192 EMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAEVAKPKRLFVPTVIPTE----LDSFVR 247 Query: 246 QMIKEDLRVSCFIP----EKYVRCKQI-DDLKKKMVSYF----SSEHSSWNEGEIVSVFE 296 + LR + P E+ R I ++ + +F SSE + + + + + E Sbjct: 248 ANCQSRLRELAYTPLGKEERAERTAAIYNETLAATLEHFRATISSEEAQADTAKALCLNE 307 Query: 297 DI--------QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + +V+R ++LD R+DGR + VR I+ ++GL+ R HGS+LF RG+TQA Sbjct: 308 HIIEDQIHAVEKEVMRHMILDDAKRLDGRALDQVRPITIELGLIPRAHGSALFTRGETQA 367 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +V +TLGT++D Q VD+L+ + F +HYNF P + GE R+G+ RREIGHG LA R+ Sbjct: 368 LVTLTLGTQKDAQSVDNLTNSDDKRFYLHYNFPPFSVGECGRLGSIGRREIGHGNLAERS 427 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I V P A+FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K Sbjct: 428 IKMVAPTEAEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIK 487 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + D + +LSDI G+EDHLG MDFKV+GT GITA QMD+KI G+ +I+ AL+QA++GR Sbjct: 488 ENDKYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHIVENALEQARKGR 547 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHILNEM K + SR L + PR+ + IP D I VIG GG+ IRGI E+TGA++NI Sbjct: 548 LHILNEMEKAIPASRTDLATYAPRLTTIKIPSDCIGMVIGKGGETIRGITEETGAEINIA 607 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647 DDGTV IA ++ +AA I+S+T PEV IY G+V V D GAFV F DGLV Sbjct: 608 DDGTVTIACTTKEGTDAALATIKSLTAKPEVGNIYVGKVRDVRDELGAFVEFLPKTDGLV 667 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692 HIS++S+ RVAK SD +K GD V VKL+D D R GK K LS+K ++Q Sbjct: 668 HISEISSTRVAKVSDHLKVGDKVTVKLVDVRKDPRTGKTKFALSIKALEQ 717 >gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 29328] gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 29328] Length = 714 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 300/689 (43%), Positives = 458/689 (66%), Gaps = 2/689 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + E + G+ +++ G++A Q++GA L GETV+L T V + ++G DFFPLT ++ Sbjct: 2 IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ Y+VGKIPGG+++RE RP+E L +R+IDR +RPLF + Y N+ QVI + D + Sbjct: 62 EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P +++M+ +S AL +S +PF GP V I+G++++NP ++ + S L+L V+GT+ Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241 DA++MVE N ++E VL AI+ H E K + E I + K C K + I + +L+ Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 EE+ EDL+ +K R I+ LK+ +V YF ++ ++ ++++D++ Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDYFVEKYDESIASKVSTIYDDLEKS 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L+ +R D R + +R+I+ V +L R HGS LF RG TQ + V TLGT D Q Sbjct: 302 EVRRLILEDYIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + +M YNF P + G+ + +P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT GITA+QMD+KI GISE I+ AL++A+ GRLHIL+ M++ +SE Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 ++ ++ PR+ ++ I P+++R VIG GGKVI I+++TG K++ +DDG + +A + Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MI+ I PE+ + Y G+V K+M+FGAFV ++GL+HIS ++ ER K Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+KE D + VKL+D DD+GK+ LS K + Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690 >gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus RS-1] gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus RS-1] Length = 751 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 314/706 (44%), Positives = 455/706 (64%), Gaps = 14/706 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F +E + + +ETGR+A Q+DGA+ G TVVL T ++L + + FFPL V Sbjct: 5 FSPIRLEAAIGDKTVTIETGRLANQADGAIWIQSGGTVVLVTAC-TQALAEEKGFFPLVV 63 Query: 62 NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +YQE YA G+IPG Y RRE RP+E E+L+ R+IDR RPLF K +++E Q+I V+ Sbjct: 64 DYQEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS--LDLFV 178 D E P V+++ ASAAL LS +PF+GP+ G +V YI+GQ+VLNP + + L+L Sbjct: 124 DGEVEPDVLALTGASAALHLSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLNLVF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237 + ++DAV+MVE +SE+++ DA+ FGH P+++ +L + K I Sbjct: 184 AASRDAVVMVEGAGRFVSEELLADALEFGHKAILPLLDLQEQLREKAGKPKIAFTPPAPI 243 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-----SYFSSEHSSWNEGEIV 292 +LE ++ + L+ + I EK R + +K+ ++ +Y + GEI Sbjct: 244 VELEALVAATAEAGLKQAFTIQEKMARREARKAVKQAVIEAVVAAYPETPLYKMKAGEI- 302 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 E ++ K++R ++ D +R+DGR++ TVR I +VG+L RTHGS+LF RG+T+A+ V Sbjct: 303 --LESMEKKLLRKLIKDTGIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVA 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ +++L+G FM+HYNF P GEV + PSRREIGHG LA R+I PV Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILPV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FP+T+RIVS++ ES+GSSSMA+V G+SLALMDAGVPI PVAGIAMGL+K+ DD Sbjct: 421 LPGPEEFPFTMRIVSQVMESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDD 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++L+DI GDED +G MDFKVAGT G+T +QMD+KI GI + +M AL QAK RLHIL Sbjct: 481 FLVLTDILGDEDAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALNQAKDARLHIL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M+ VL E R +L P++ ++ I P++IR VIG GGK I+ + +TGA ++I+D G Sbjct: 541 GRMAAVLPEPRPELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGASIDIEDTGK 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + I + +L +E A+ + +V YKG+V+K++D GA V +GLVH+SQL Sbjct: 601 ISIFAPTLESLEKAKARVLYYDQHADVGANYKGRVIKIIDCGAIVEILPGLEGLVHVSQL 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697 ERVA +DVVK G + VK+LD + G+++LS K V+++ G P Sbjct: 661 DVERVASPADVVKMGQEIEVKVLDVEPTGRVRLSRKAVLNEERGIP 706 >gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 53516] gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 53516] Length = 714 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 299/689 (43%), Positives = 457/689 (66%), Gaps = 2/689 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + E + G+ +++ G++A Q++GA L GETV+L T V + ++G DFFPLT ++ Sbjct: 2 IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ Y+VGKIPGG+++RE RP+E L +R+IDR +RPLF + Y N+ QVI + D + Sbjct: 62 EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 ++P +++M+ +S AL +S +PF GP V I+G++++NP ++ D+ L+L V+GT+ Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDLELTVAGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241 DA++MVE N ++E VL AI+ H E K + E I + K C K + I + +L+ Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNVELD 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 EE+ EDL+ +K R I+ LK+ +V +F ++ ++ ++++D++ Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L+ +R D R + +R+I+ V +L R HGS LF RG TQ + V TLGT D Q Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + +M YNF P + G+ + +P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K D+ +ILSDI G Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKKDDNVVILSDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT GITA+QMD+KI GISE I+ AL++A+ GRLHIL+ M++ +SE Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 ++ ++ PR+ ++ I P+++R VIG GGKVI I+++TG K++ +DDG + +A + Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MI+ I PE+ + Y G+V K+M+FGAFV ++GL+HIS ++ ER K Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+KE D + VKL+D DD+GK+ LS K + Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690 >gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] Length = 732 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 314/728 (43%), Positives = 467/728 (64%), Gaps = 49/728 (6%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD T ++ AG+ +K+ETG IARQ+ G+VL T G T VL T + +K+GQDFFPLT Sbjct: 1 MFDKKTYILDVAGKEVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+++RES+P+ E+LISR+IDR IRPLF + + N V+INV+ Sbjct: 61 VDYIEKFYATGKFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF--V 178 D + P ++ + S AL LS +PF GPV G V Y+NG+Y++NP E + ++D++ V Sbjct: 121 DGINMPEDIATIGVSFALGLSDIPFSGPVAGVTVGYVNGEYIINPD-KEQRANMDIYLSV 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 +GT+ A+ MVE A+++SE+ +L+AI+ GH E K K+C ++ +++S + + Sbjct: 180 AGTKSAITMVEAGASEVSEEEMLNAIMLGHEEIK----------KICEQQETILNSLNIT 229 Query: 239 KLE-------EEMSQMIKE---DLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-------- 280 K+E E ++ + + +L+ + +P K + + ID+L + ++S F Sbjct: 230 KMEFKGINYDERVTTFLNKYQGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEIL 289 Query: 281 --------------SEHSSWNEGEIVSVFE----DIQAKVVRTVMLDKKVRMDGRDSETV 322 E+ + E+V F+ D++ K+VR +++ K R DGR + + Sbjct: 290 SKEKTEEEKLLELIGENKEKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEI 349 Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382 R ++AQ+ +L+ HGS+LF RG+TQA+V TLG++EDEQ +D + G F +HYNF P Sbjct: 350 RPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPP 409 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 + GE M AP RRE+GHG LA RA+ V+P FPYT+R+VSEITES+GSSS A++C Sbjct: 410 FSVGEAGFMRAPGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASIC 469 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502 G SLALM AGVPI VAGIAMGL+K+ ++F +L+DI G EDHLG MDFKVAGT GITA Sbjct: 470 GGSLALMAAGVPIKGTVAGIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITA 529 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +QMD+KI GI++ IM +AL QA +GR+HI+ M + ESR L E P++ + I P + Sbjct: 530 IQMDIKIEGINKEIMEIALTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSK 589 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 I +IG GK+I+ I+E+TG K++++DDG V I ++ A E++ T E++K+ Sbjct: 590 IAGLIGPAGKIIKSIIEETGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKV 649 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 YKG+V K+ FGAFV +GL+HIS++S +R+ + DV+K D V VK++ +D K Sbjct: 650 YKGRVTKLAKFGAFVELVPGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNK 709 Query: 683 IKLSMKVV 690 LSMK + Sbjct: 710 FSLSMKAL 717 >gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] Length = 689 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 306/683 (44%), Positives = 451/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ ING++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ ED++L+ I+ H E K ++ + KE V + KD +++ + + Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ ++Q +D Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L ++ HYNF + GE P RREIGHG LA RA+ PV+P FPY LR+ Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+E+I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola ATCC 35405] gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC 35405] Length = 698 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 300/683 (43%), Positives = 466/683 (68%), Gaps = 20/683 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++G++ A Y + +LAT+ ++G D+ PLTV+Y E+ YA GKIPG Sbjct: 14 LILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RP + EIL+SR+IDR +RPLF+K + E Q++ + D+ + P +++++A+S Sbjct: 74 GFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAVIASS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AA+ +S +PF+GPV A+V Y NG+Y++NP + + +++ V+GT++ + MVE AN+ Sbjct: 134 AAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKEGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM--SQMIKE 250 +SE+V+L A+ H K + + L ++ KE P+V LE E+ Q I + Sbjct: 194 VSEEVMLTALEKAHEMIKSLCKMQEDLRELAGKEKLPLV-------PLEAELENKQAIYD 246 Query: 251 D----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRT 305 + L + ++ K R ++ D +KK++ ++ + + ++ ++FE+++ ++RT Sbjct: 247 EAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYNILRT 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT DEQ D Sbjct: 307 NILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDD 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G +R +F++HYNF P + GEV R+G RREIGHG LA R+++P++P+ +FPYT+R+ Sbjct: 367 IEGDRRENFILHYNFPPFSVGEVGRLGT-GRREIGHGNLAHRSLYPMVPEREKFPYTVRV 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDED 484 VSE+ ES+GSSSMATVC +L+++ AGVP+ KPVAGIAMGL+ +G+D + ILSDI G+ED Sbjct: 426 VSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDILGEED 485 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT GIT QMD+KI G+S IM AL QAK GR+HIL M++ +S Sbjct: 486 HLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCISAPNA 545 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-SLAEI 603 +L ++ PRVE+M IP D+I +IG GGK ++ I ++ +N ++DGTV I S +++ Sbjct: 546 ELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYSKDGTSDL 605 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+ +++ IT PEV +Y G V K+MDFGAFV ++GL HIS+LS RV K SDV Sbjct: 606 KGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEKVSDV 665 Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686 +KEG + VKLL+ D G++ LS Sbjct: 666 LKEGQEIPVKLLEIDKLGRLNLS 688 >gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11] Length = 699 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + AK+ KE I + + Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 240 Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 L + + E L+ + K R + +D L+++++ F+ E + E E+ Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 300 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 301 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 421 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GK I+GI++QTG+ V+I D Sbjct: 541 EILELMNSTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I S E ++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911] gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911] Length = 706 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 310/691 (44%), Positives = 452/691 (65%), Gaps = 4/691 (0%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D ++WAGR L +E G++A+Q++GA L YG+T VL+T + K+ DFFPLTVN Sbjct: 4 DKKIYSLDWAGRTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKN-LDFFPLTVN 62 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+ER YAVGKIPGG+++RE RP+E IL SR+IDR IRPLF+ ++NE QV+ VM D Sbjct: 63 YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 + S + +M +S AL +S +PF GP+ G V ING++V+NP +++ ++ + L V+GT Sbjct: 123 DCSSEMAAMFGSSLALSVSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDMHLVVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240 +DA+ MVE A+++ E+ +L+AI++GH E K +I ++ KE I + + + Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHEEIKRLISFQEQIVSEVGKEKTEIKLYEIDADI 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299 E ++ + ++D+ + + EK+ R I +K +++ Y E ++ V + + Sbjct: 243 ESKVREAAEKDMVSAIQVQEKHAREAAIKTVKDAVLAQYEEQEADDETIKQVKKVLDKLV 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ ++KVR DGR + +R +S+++GLL RTHGS LF RG TQA+ + TLG D Sbjct: 303 KAEVRRLITEEKVRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + FM HYNF + GE M P RREIGHG L RA+ PV+P F Sbjct: 363 VQILDGLGIEEEKRFMHHYNFPNFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGL+K GD + IL+DI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGDYYSILTDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+ IL+ M + Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKAGRMQILDSMLATI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 +E + +L + P++ M I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S Sbjct: 543 AEPKKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVD 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A+++I I EV ++Y G+V ++ FGAFV +DGLVHIS+L+ ERV K Sbjct: 603 QEMNDKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVGK 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD + VK+ + D +G++ LS K V Sbjct: 663 VEDVLSLGDELLVKVTEIDKQGRVNLSRKAV 693 >gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] Length = 703 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 5 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 65 VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + AK+ KE I + + Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244 Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 L + + E L+ + K R + +D L+++++ F+ E + E E+ Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 304 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GK I+GI++QTG+ V+I D Sbjct: 545 EILELMNSTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I S E ++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703 >gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides BS1] gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides BS1] Length = 734 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/703 (44%), Positives = 469/703 (66%), Gaps = 28/703 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71 G+ + +ETG++A+Q+DGA + G+T+V+ATVV R+ QDFFP+ V Y+E+ YA G Sbjct: 12 GKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVEYREKYYAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+++RESRP+E EIL +R+IDR++RPLF Y +TQ+II+V+ D + V+ Sbjct: 72 KFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQLNDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF + +V ING++V+NP ++E Q +D+ + GT D + M+E Sbjct: 132 IAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGGTNDTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP---IVIDSKDFSKLEEEMSQM 247 E N++SE +L+AI FGH K + +A K + ID+ D +L+E + + Sbjct: 192 EMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPD--ELKESIKEA 249 Query: 248 IKEDLRVSCFIP-EKYVRCKQIDDLKK----KMVSYFSSEHSS------------WNEGE 290 + L+ ++P K R ++ + K +++ + +E ++ NE Sbjct: 250 CEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPSKALYLNEQI 309 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I I+ +V+R ++LD R+DGR E VR IS ++GL+ R HGS+LF RG+TQA+V Sbjct: 310 ISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALV 369 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V+TLGT++D Q +D+L FM+HYNF P + GE R+G RREIGHG LA RA+ Sbjct: 370 VLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGHGNLAERAVK 429 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 V+P ++FPYT+R+VSEI ES+GSSSMA+VCG++LA MD GVP++KPV+GIAMGL+K+ Sbjct: 430 KVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKED 489 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D++ +LSDI G+EDHLG MDFKVAGT GITA QMD+KI G+ +I+ AL+Q+K GRLH Sbjct: 490 DNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKALEQSKNGRLH 549 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL++M++ +++ R ++G++ P++ + +P D I +IG GG+ IR I E+TGA++N+DDD Sbjct: 550 ILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEETGAQINVDDD 609 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHI 649 GTV I+S + AA E I+++ PEV IY G+V + D GAFV DGLVHI Sbjct: 610 GTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEILPRTDGLVHI 669 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689 S+++ ERV K SD +K+GD V VKL+D D R GKI+ ++ + Sbjct: 670 SEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSI 712 >gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] Length = 722 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 303/686 (44%), Positives = 448/686 (65%), Gaps = 6/686 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLTVNY+E+ Y+ Sbjct: 11 EWAGQKLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPG-DFFPLTVNYEEKMYS 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V D + SP + Sbjct: 70 VGKVPGGFLKREGRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V I+G+YV+NP ++ ++ ++L V+GT +A+ MV Sbjct: 130 AMLGSSIALCISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDINLTVAGTYEAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQM 247 E A ++SE+ +L+AI+FGH E K + + ++ + KE I+ +LE E+ Sbjct: 190 EAGAKEVSEEAMLEAIMFGHEEIKRLCKFQEEIVQAVGKEKREIELFVSDPELEAEVKAA 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVVR 304 + ++ + EK R I+D+K++++ + + E + E+ + E I+ +R Sbjct: 250 SEAKMKTAIKTEEKKAREAAIEDVKEEILETYKAKELEDEAAVLAEVAHILEMIEKDEMR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ K+R DGR +R +S++ GLL R HGS LF RG TQA+ + TL + Q +D Sbjct: 310 RLISQDKIRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + FM HYNF + GE AP RREIGHG L RA+ V+P +FPYT+R Sbjct: 370 GLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIR 429 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ ES+GSSS A++CGS+LA+MDAGVPI PVAGIAMGLVK GDD+ IL+DI G ED Sbjct: 430 LVSEVLESNGSSSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKLGDDYTILTDIQGMED 489 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H G MDFKVAGT GITA+QMD+KI G+S I+ AL+QAK GRLHIL ++ ++ R Sbjct: 490 HFGDMDFKVAGTKDGITALQMDIKIDGLSRQILHEALEQAKEGRLHILEHLNATIAGPRE 549 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 L + P++ ++I P++I++VIG GGK I I+++TG K++I+ DGTV +AS + Sbjct: 550 TLSPYAPKIVTLSIKPEKIKDVIGPGGKQINNIIDETGVKIDIEQDGTVYVASQDEEMNK 609 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A ++I I EV +IY G+V ++ FGAFV DGLVHIS+L+ ERV K D++ Sbjct: 610 KAIQIIEDIVREVEVGEIYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDIL 669 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VK+++ D +G++ LS K + Sbjct: 670 KLGDEVKVKVIEVDHQGRVNLSRKAL 695 >gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 703 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 309/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 5 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 65 VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 125 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I + + + Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 244 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 +++ + E L+ + K R +D L+++++ F E + E E+ Sbjct: 245 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 304 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 305 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 425 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 484 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + R+ Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARI 544 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI+EQTGA V+I D Sbjct: 545 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAALIGPGGKNIKGIIEQTGATVDITD 603 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E +++ S E N++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 604 DGLVSVFAKDADTLEKTLKLVDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703 >gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132] gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans ND132] Length = 753 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 311/681 (45%), Positives = 453/681 (66%), Gaps = 11/681 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG+ ARQ+ GAV + G+T VL T V + L + + FFPLT NYQE YA G++PG Sbjct: 20 ITLETGKYARQASGAVTISSGDTTVLVTAV-TQPLAEDRGFFPLTCNYQEMAYAAGRVPG 78 Query: 76 GYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 Y RRE RP+E E L+SR+IDR IRPLF+K + +E Q+I V+ D +P V+++ A Sbjct: 79 NYFRREVGRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIATVLSADKRVNPDVLALTGA 138 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAVLMVELEA 192 SAA +S +PF GP+VGA+V Y++ ++VL P E++ SL+L + T+DA++MVE Sbjct: 139 SAACHISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEERSSLNLIFAATRDAMVMVEGGG 198 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N +SED+V DA+ +GH + +P+ + +L K+ + V + ++ E + +++ +D Sbjct: 199 NFVSEDLVADALAWGHEQVRPLFDIQDELREKVGVPKLEVTPPQRDEQVAEYLGEILTDD 258 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSY----FSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 L+ + PEK VR D K+K F + S E + D+ K+VR + Sbjct: 259 LKKALTTPEKMVRYAAKDAAKQKAKVAVAEKFPDDPSKLAAVE--DIVGDMTKKIVRERI 316 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + + +R+DGR++ TVR +S +VG+LQ+THGS+LF RG+T ++ TLG+ DEQ DSL Sbjct: 317 VKEGLRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLL 376 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G FM+HYNF P GE + PSRRE+GHG LA RA+ PV+P FP+T+R+VS Sbjct: 377 GDATKRFMLHYNFPPYCVGEARMLRGPSRREVGHGALAERALTPVIPDPENFPFTIRVVS 436 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 EI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+GD + +L+DI GDED LG Sbjct: 437 EIMESNGSSSMASVCGATLSLMDAGVPISDPVAGIAMGLCKEGDQYFVLTDILGDEDALG 496 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT GITA+QMD+KI GI ++++ ALQQAK R HIL+ M++V+++ R +L Sbjct: 497 DMDFKVAGTRDGITAIQMDIKIAGIPQDVLKKALQQAKEARTHILDHMAEVIAKPRPELS 556 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 P+++++ I P++IR+VIG GGK I+ I +T A ++I+D G + I + +LA +E A+ Sbjct: 557 TLAPQMDVVYIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISIFAPTLASMEKAK 616 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EM+ PE K YKG V K+++ GA V ++G++H+SQL ERV + DVV+ G Sbjct: 617 EMVLYYDQKPEPGKNYKGVVRKILEVGALVEILPGQEGMLHVSQLDFERVDRVEDVVQLG 676 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 VWVK + + G+I+LS K Sbjct: 677 QEVWVKCIALEPGGRIRLSRK 697 >gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 689 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 310/683 (45%), Positives = 452/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E IL SR+IDR IRPLF K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 V M+ ASAAL +S +P+ GP+ G ++ ING++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 VCGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ ED++L+ I+ H E K ++ + KE V +SKD +++ + + Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIADAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q +++ ++++F + N G++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NMGDVNKAFDAMIKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ + Q +D Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + ++ HYNF + GE P RREIGHG LA RA+ PV+P A FPY LR+ Sbjct: 363 IGIETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEADFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIRGI+E+TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIEETGAKIDIEDDGTVFIASVEQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] Length = 732 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 323/699 (46%), Positives = 464/699 (66%), Gaps = 22/699 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H +E +AGRPL +ETGR+A+Q+ G+ + +GET+VLA V + + FFPLTV Y Sbjct: 1 MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSEN-QSPLPFFPLTVEY 59 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+TYA GKIPGG+++RE RP ++EIL +R+IDRSIRPLF + +KNE QV I V+ D E Sbjct: 60 KEKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQE 119 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + V+++VAAS AL S +PF GP+ G +V + G +VLNP + S L+L V+G++ Sbjct: 120 NDADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSK 179 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---------ISKLAKMCAKEPIVID 233 D+++MVE + ++SE+ VL+++ H+ + +I + K++ + A+ P I Sbjct: 180 DSIVMVEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGIT 239 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 ++ ++E S I+E L +K+ R + ++ KK++ E N +I + Sbjct: 240 TR----VKELASGRIREALNQK----DKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGN 290 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + D++ +R+ +LD ++R+DGR + VR IS +L R HGS+LF RG TQA+V T Sbjct: 291 LLGDVEYHELRSQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAAT 350 Query: 354 LGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 LGT +D Q +DS+ G FM+HYNF P +TGEV M SRREIGHG LA RA+ Sbjct: 351 LGTAKDAQRLDSIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQG 410 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP A FPYT+RIVS++ ES+GSSSMA+VCG SL+L DAGVP+ VAG+AMGL+K+G+ Sbjct: 411 VLPDFADFPYTIRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGE 470 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G EDHLG MDFKVAGT GIT++QMD+KI G+ IM AL QAK GRLHI Sbjct: 471 RYAILTDILGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHI 530 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM K L+ R L ++ PR+ + IP D+I +IG GK IRGI ++TGA+++++DDG Sbjct: 531 LGEMDKALAAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDG 590 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ +E A++M+ +IT P V + Y+G V V FGAFV + L+H+S+ Sbjct: 591 TVTIAAVGGDSMERAKQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSE 650 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + ERV K DVVK+GD V VKL+D D+RG+++LSMK + Sbjct: 651 MRWERVEKPEDVVKKGDRVTVKLVDRDERGRLRLSMKAL 689 >gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK 1622] gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK 1622] Length = 722 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 313/684 (45%), Positives = 451/684 (65%), Gaps = 17/684 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L +E GR+A+Q+DG+V+ YG+T++L T V R KD DF PLTV YQE+ Y+ G+IPG Sbjct: 13 LSIEVGRLAKQADGSVVVRYGDTMLLVTAVSAREKKD-IDFLPLTVEYQEKLYSAGRIPG 71 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 Y +RE R TE E L SR++DRS RPLF + Y ETQ+I +V+ D E+ + + AS Sbjct: 72 SYFKREGRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENEGDIHGITGAS 131 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL +S +PF+GP+ G +V + GQ V NP + +Q LDL ++ ++ A++MVE A + Sbjct: 132 AALWVSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDLDLVMAVSRKAIVMVEGGAEE 191 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFSKLEEEMSQMI 248 +SE ++ A+ FG +P ++ +L + K+ P +D +K+ E + Sbjct: 192 VSEADMVAALDFGFTTAQPALDLQDELRRELNKQVRSFEKPAAVDEGLRAKVRE----LA 247 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVR 304 + ++ I EK R + + KK+ ++ + ++ E +V ED++ + +R Sbjct: 248 MDGIKAGYGIKEKGARYEALGKTKKEALAKLKEQLGDGYTPLVEKHAKAVVEDLKYEHMR 307 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + ++ R+ R + VR I+ +VG+L RTHGS++F RG+TQA+VV TLGT +DEQ ++ Sbjct: 308 EMTVNGG-RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSDDEQRLE 366 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L G FM+HYNF P + E + P RRE+GHG LA RA+ ++P++ FPYT+R Sbjct: 367 MLGGMAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMVPKSESFPYTVR 426 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VS+I ES+GSSSMA+VCG +LALMDAGVP+ PVAGIAMGLVK+GD ILSDI GDED Sbjct: 427 LVSDILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSDILGDED 486 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GIT++QMD+KI G++ IM AL+QA++GRLHIL EM K L+ESR Sbjct: 487 HLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKTLAESRK 546 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ ++ PR+ + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V IAS++ ++ Sbjct: 547 EISQYAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASANGEAVK 606 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AA MI+++T E+ KIY G V K+ +FGAFV DGL+HIS+LS +RV SDV+ Sbjct: 607 AAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVL 666 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 EGD V VK++ D GKI+LS K Sbjct: 667 NEGDEVLVKVVSIDKTGKIRLSRK 690 >gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna BVS033A4] gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna BVS033A4] Length = 714 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/685 (43%), Positives = 457/685 (66%), Gaps = 2/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E + G+ +++ G++A Q++GA L GETV+L T V + ++G DFFPLT +++E+ Sbjct: 6 EYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE RP+E L +R+IDR +RPLF + Y N+ QVI + D +++P Sbjct: 66 YSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +++M+ +S AL +S +PF GP V I+G++++NP ++ + S L+L V+GT+DA++ Sbjct: 126 ILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEMS 245 MVE N ++E VL AI+ H E K + E I + K C K + I + +L+EE+ Sbjct: 186 MVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELDEEVK 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 EDL+ +K R I+ LK+ +V +F ++ ++ ++++D++ VR Sbjct: 246 SFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFIEKYDESIASKVSTIYDDLEKSEVRR 305 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L+ +R D R + +R+I+ V +L R HGS LF RG TQ + V TLGT D Q +D Sbjct: 306 LILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDG 365 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + +M YNF P + G+ + +P RREIGHG LA RA+ PV+P +FPYT+R+ Sbjct: 366 LIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRV 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G EDH Sbjct: 426 VSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQGLEDH 485 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GITA+QMD+KI GISE I+ AL++A+ GRLHIL+ M++ +SE + Sbjct: 486 LGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISEPNKE 545 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ ++ I P+++R VIG GGKVI I+++TG K++ +DDG + +A + + Sbjct: 546 ISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTESAQR 605 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A +MI+ I PE+ + Y G+V K+M+FGAFV ++GL+HIS ++ ER K DV+K Sbjct: 606 AIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVEDVLK 665 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 E D + VKL+D DD+GK+ LS K + Sbjct: 666 ENDEIMVKLMDIDDQGKMTLSRKAL 690 >gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] Length = 703 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 312/708 (44%), Positives = 457/708 (64%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 5 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 64 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 65 VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++P + ++ +S ALM+S +PF GPV G V Y NG+++LNP E ++ LDL V+ Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + AK+ KE I +F K Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENI-----EFEK 239 Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290 E+ ++K E L+ + K R + +D L+++++ F+ E + E E Sbjct: 240 --PEVLPLVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEE 297 Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF Sbjct: 298 LPEDIILEFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 357 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ++ + TLGT+EDEQ +D L F +HYNF P + GEV RM +P RRE+GHG Sbjct: 358 RGETQSLAITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMSSPGRRELGHG 417 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 418 SLAERALRYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 477 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL Sbjct: 478 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 537 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA + RL IL M+ +S+ +L PR++ + IP D+I +IG GK I+GI++QTG Sbjct: 538 QAHQARLEILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTG 596 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + V+I DDG V + + +E ++I S E ++Y+G+VV +M FGAF+ Sbjct: 597 STVDITDDGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPG 656 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 657 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703 >gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 714 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/689 (43%), Positives = 457/689 (66%), Gaps = 2/689 (0%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + E + G+ +++ G++A Q++GA L GETV+L T V + ++G DFFPLT ++ Sbjct: 2 IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ Y+VGKIPGG+++RE RP+E L +R+IDR +RPLF + Y N+ QVI + D + Sbjct: 62 EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P +++M+ +S AL +S +PF GP V I+G++++NP ++ + S L+L V+GT+ Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241 DA++MVE N ++E VL AI+ H E K + E I + K C K + I + +L+ Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 EE+ EDL+ +K R I+ LK+ +V +F ++ ++ ++++D++ Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L+ +R D R + +R+I+ V +L R HGS LF RG TQ + V TLGT D Q Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + +M YNF P + G+ + +P RREIGHG LA RA+ PV+P +FPY Sbjct: 362 VLDGLIDQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSE+ S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K D+ +ILSDI G Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKADDNVVILSDIQG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT GITA+QMD+KI GISE I+ AL++A+ GRLHIL+ M++ +SE Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 ++ ++ PR+ ++ I P+++R VIG GGKVI I+++TG K++ +DDG + +A + Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A +MI+ I PE+ + Y G+V K+M+FGAFV ++GL+HIS ++ ER K Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+KE D + VKL+D DD+GK+ LS K + Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690 >gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. 17-4] gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. 17-4] Length = 717 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 296/688 (43%), Positives = 449/688 (65%), Gaps = 8/688 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L++E G++A+Q++GA L Y +TVVL+ V + KD DFFPLTVNY E+ Y+ Sbjct: 25 EWAGRTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKD-VDFFPLTVNYDEKMYS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE+RP+E L +R+IDR IRP+F++ ++NE Q+ VM D SP Sbjct: 84 VGKIPGGFIKREARPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAFS 143 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M +S +L +S +PF GP+ V ++G+Y++NP L+++ S + L V+GT+DA+ MV Sbjct: 144 AMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDIHLTVAGTKDAINMV 203 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247 E A ++SE+ +L A++FGH + ++ ++ KE + I + LE+E++ Sbjct: 204 ESGAAEVSEEDMLGALMFGHEAIQELVAFQEEIVAAVGKEKMTIQLLQIDADLEKEVNDA 263 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVSVFEDIQAKV 302 + + + EK R + I+ +K++ ++++ ++ +E E+ + ED++ Sbjct: 264 FQTKMIAAIQTEEKLAREENIEAVKEEAMTFYEEKYQDNDEAKRINKEVKQIVEDMEKNE 323 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ K+R DGR + +R +++++GLL R HGS LF RG TQA+ + TL + Q Sbjct: 324 VRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIATLAPLGEHQI 383 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L F+ HYNF + G P RREIGHG L RA+ V+P FPY Sbjct: 384 IDGLGIENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALAQVIPSEEDFPYM 443 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLVK+G+++ +L+DI G Sbjct: 444 IRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYTVLTDIQGL 503 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI++ I+ AL QAK+ R+ IL+E+ ++E Sbjct: 504 EDHLGDMDFKVAGTSKGITALQMDIKIEGITQQILEEALTQAKKARMEILDELISTIAEP 563 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 +L + P++E+M I P++I+ VIG GG I I+E+TG K++ID +G + IAS A Sbjct: 564 HEELSAYAPKIEMMQIKPEKIKVVIGRGGDQINAIIEETGVKIDIDQEGNISIASEDAAM 623 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I A+E+I +T EV KIY G+V ++ FGAFV +DGLVHIS+L+ ERVAK D Sbjct: 624 IRRAKEIIEELTKDIEVGKIYSGKVKRIEKFGAFVEIAKGKDGLVHISELANERVAKVED 683 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ G+ + VK+++ D +G+I LS KV+ Sbjct: 684 VLTLGEVMDVKVIEIDKQGRINLSRKVL 711 >gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica SIR-1] gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica SIR-1] Length = 698 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 320/680 (47%), Positives = 435/680 (63%), Gaps = 18/680 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + ETGRIA+Q++ V+ T GET VL R KD F PLTV ++ A GKIPG Sbjct: 15 IGFETGRIAKQAN-TVIMTLGETAVLVAATMSREPKD-LPFMPLTVEFRSANAAAGKIPG 72 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 GY +RE RPT EIL+ R+ DR IRPLF K Y+ +TQ++ V+ +DL++ P V++M AS Sbjct: 73 GYFKREGRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIVSQVLSNDLQNEPDVLAMTGAS 132 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AALM+S P+ GPV G +V ++G+ V P D+ Q L+L VS ++DA++MVE A Sbjct: 133 AALMISPAPWAGPVAGIRVARVDGELVAFPTFDQIQQADLNLIVSCSRDAIVMVEAGAEG 192 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLEEEMSQMI 248 +SE ++DA++F + P+IEA +L KM +P+V ++ +++ S MI Sbjct: 193 ISESDMIDALMFAKEQSLPLIEAQERLRARAGKPKMEWVDPVVDEAFRGQVMDKARSAMI 252 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + I K+ R I +KK MV F E EI + ++ +VR + Sbjct: 253 E-----ALAIRGKHDRHAAISAVKKSMVEAFGDERKD----EISAAVGKLEKTLVREATV 303 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 ++ R+DGR +R + +V +R HGS+LF RG+TQAI TLGT D Q +D++ G Sbjct: 304 NEGRRVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERDAQRLDTIRG 363 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 N F++HYNF P GE M SRRE GHG LA RA+ PV+P T FPYTLR+VS+ Sbjct: 364 DVNNTFLLHYNFPPYCVGEARPMRGTSRREQGHGALAHRALTPVMPDTESFPYTLRVVSD 423 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 TES+GSSSMA VCG L+LMDAGVPI PVAGIAMGL+++GD +LSDI GDEDHLG Sbjct: 424 TTESNGSSSMAAVCGGCLSLMDAGVPIKAPVAGIAMGLIQEGDKIAVLSDILGDEDHLGD 483 Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFK GT GITA+QMD+KI G++ +I+ AL+QA+ GRLHIL M + L E R + Sbjct: 484 MDFKCCGTKDGITALQMDIKIHGLTRDILETALEQARAGRLHILEAMLEKLPEPREDISR 543 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 + PRVE + + DQIR++IG GGKVIRGI EQTG +NI+DDG V +AS+ + I A+ Sbjct: 544 YAPRVETVWVKIDQIRSIIGPGGKVIRGIQEQTGVVININDDGRVTMASADMDAIAKAKA 603 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 +I +T PE + Y G V +V+DFGAFV DGLVHIS+L RV + +DVV EGD Sbjct: 604 IIEGLTFEPEPGQYYNGVVKRVVDFGAFVEIMPGTDGLVHISELENRRVDRVTDVVSEGD 663 Query: 669 TVWVKLLDFDDRGKIKLSMK 688 V VK+++ DD+G+I+LS K Sbjct: 664 DVVVKVVNIDDQGRIRLSRK 683 >gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 736 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 306/681 (44%), Positives = 452/681 (66%), Gaps = 12/681 (1%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 +E G++A Q+ GAV +G+TVVL T + ++L DF PLT NYQE Y+ G++PG Y Sbjct: 20 IEHGKLALQASGAVTVQWGDTVVLVTATH-QALDRVVDFLPLTCNYQEMLYSAGRVPGNY 78 Query: 78 LRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 RRE RP+E+E L SR++DR IRPLF K NE QVI V+ D E S +++M+ AS Sbjct: 79 FRREVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISSDKERSADILAMLGAST 138 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQL 195 AL +S +PF GP+ +V Y +G+++LNP E S L++ ++G++DAV+MVE A L Sbjct: 139 ALHISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLNMILAGSRDAVVMVEGGAQFL 198 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRV 254 SED++ +A+ +GH + P+++A +L K +E V + ++L E ++ + L Sbjct: 199 SEDIMTEAVAWGHAQLGPLLDAQEELRKELGREKFTVTPPTEDTELIEAVAGLATAPLTE 258 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRTVMLD 309 + +P K R +K+ ++ ++++ E GEI+ E ++ K+VR ++ Sbjct: 259 ALAVPGKMDRRDAKKKVKQNLMEALMAKYAETPERIRGVGEIM---EKLEKKIVRQRIMT 315 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K+R+DGRD TVR + +VG L RTHGS++F RG+T+A+ TLG+ DEQ +++L+G Sbjct: 316 DKIRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGD 375 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 F+MHYNF P + GE + AP RREIGHG L+ RA++PVLP+ FP+T+R+VS+I Sbjct: 376 TSRRFLMHYNFPPYSVGEARMLRAPGRREIGHGALSERALNPVLPEPDAFPFTIRVVSDI 435 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMA+VCG +LALMDAGVPI P+AGIAMGL+K+GD++++L+DI GDEDHLG M Sbjct: 436 MESNGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGDEYLVLTDILGDEDHLGDM 495 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAG+ G+T++QMD+KI GI +M AL QAK R+HIL++M +++ R +L +F Sbjct: 496 DFKVAGSRDGVTSIQMDIKIAGIPAEVMQKALHQAKDARVHILDQMEALIAAPRGELSKF 555 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P+++I+ I D+IR VIG GGK I+ I E T A ++IDD G + I + + AREM Sbjct: 556 APQMDIVHISQDKIREVIGPGGKNIKAICEATKADIDIDDSGKISIFAPDSVSLAKAREM 615 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + E+NK Y G V K+MDFGAF+ +GL HISQL+ +RV +DVV+EGD Sbjct: 616 VLYYDQKAELNKDYDGIVKKIMDFGAFIEILPGLEGLCHISQLARDRVNVVTDVVQEGDA 675 Query: 670 VWVKLLDFDDRGKIKLSMKVV 690 + V+++D + G+IKLS K + Sbjct: 676 IRVRVIDIEPSGRIKLSRKAI 696 >gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola F0402] Length = 698 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/683 (43%), Positives = 464/683 (67%), Gaps = 20/683 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++G++ A Y + +LAT+ ++G D+ PLTV+Y E+ YA GKIPG Sbjct: 14 LILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RP + EIL+SR+IDR +RPLF+K + E Q++ + D+ + P +++++A+S Sbjct: 74 GFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAVIASS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AA+ +S +PF+GPV A+V Y NG+Y++NP + + +++ V+GT++ + MVE AN+ Sbjct: 134 AAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKEGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM--SQMIKE 250 +SE V+L A+ H K + + L ++ KE P+V LE E+ Q I + Sbjct: 194 VSEAVMLTALEKAHEMIKALCKMQEDLRELAGKEKLPLV-------PLEAELENKQAIYD 246 Query: 251 D----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRT 305 + L + ++ K R ++ D +KK++ ++ + + ++ ++FE+++ ++RT Sbjct: 247 EAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYNILRT 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT DEQ D Sbjct: 307 NILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDD 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G +R +F++HYNF P + GEV R+G RREIGHG LA R+++P++P+ +FPYT+R+ Sbjct: 367 IEGDRRENFILHYNFPPFSVGEVGRLGT-GRREIGHGNLAHRSLYPMVPEREKFPYTVRV 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDED 484 VSE+ ES+GSSSMATVC +L+++ AGVP+ KPVAGIAMGL+ +G+D + ILSDI G+ED Sbjct: 426 VSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDILGEED 485 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT GIT QMD+KI G+S IM AL QAK GR+HIL M++ +S Sbjct: 486 HLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCISAPNA 545 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEI 603 +L ++ PRVE+M IP D+I +IG GGK ++ I ++ +N ++DGTV I +++ Sbjct: 546 ELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYGKDGTSDL 605 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A+ +++ IT PEV +Y G V K+MDFGAFV ++GL HIS+LS RV K SDV Sbjct: 606 KGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEKVSDV 665 Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686 +KEG + VKLL+ D G++ LS Sbjct: 666 LKEGQEIPVKLLEIDKLGRLNLS 688 >gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName: Full=Polynucleotide phosphorylase 4; Short=PNPase 4 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 704 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 315/693 (45%), Positives = 459/693 (66%), Gaps = 11/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + + E AG+ L +E G+ A Q+ G+ + YG+T VL +S ++G DFFPL+V+Y Sbjct: 2 IKQFQTELAGKTLHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RE+RP+E +L SR+IDR IRPLF K Y+NE QVI VM D + Sbjct: 62 EEKLYAVGKIPGGFIKREARPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 +P +V+M+ +S AL +S +PF GP V +NG++VLNP D+ S +DL VSGT+ Sbjct: 122 YAPDIVAMIGSSIALSISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDIDLVVSGTK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237 DA++M+E AN+++ED +LDA++F H E K ++ I ++ K + ID Sbjct: 182 DAIMMIESGANEVTEDQMLDALMFAHEEIKTIVAFIEEIVAEVGKPKQEVQLFAIDET-- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 L+ E+ K+ + + +K R +++D++KK+++ +FS ++ + + IV V Sbjct: 240 --LDMEVRVFAKDKIVTAMKTFDKMERNERLDNVKKEILVHFSKQYENELKS-IVEVINS 296 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I + R ++ KVR D R + +R I+++VG+L RTHG+ LF RG TQ + V TLG Sbjct: 297 IIKEQFRYMITHDKVRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGAL 356 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L + +M HYNF P + GE + P RREIGHG LA RA+ P++P Sbjct: 357 GEVQILDGLGEEESKRYMHHYNFPPYSVGEAKFLRGPGRREIGHGALAERALLPMVPSQD 416 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPY +R+VSE+ S+GSSS A+VCGS+LAL+DAGVPI VAGIAMGLVK+ D ILS Sbjct: 417 DFPYAIRLVSEVLSSNGSSSQASVCGSTLALLDAGVPIKDMVAGIAMGLVKENDKIAILS 476 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED LG MDFKVAGTD GITA+QMD+KI GI ++I+ AL+QA+ GRLHIL++M K Sbjct: 477 DIQGMEDALGDMDFKVAGTDKGITAIQMDIKIKGIHKDILKDALEQARVGRLHILDKMKK 536 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + + R +L F PRV M I PD+IR+VIG GGK I I+++TG K++ID+DGT+ IA+ Sbjct: 537 AIDKPRPELSPFAPRVLKMKIHPDKIRDVIGSGGKTINRIIDETGVKIDIDNDGTIFIAA 596 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S +E A +I +I PEV + Y G+V+K+M+FGAF+ ++GL+H+S ++ ERV Sbjct: 597 ESQEAVEKAIIIIENIIKDPEVGQNYTGKVIKIMNFGAFLEILPGKEGLLHVSNIAHERV 656 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DV++ G + VK+++ D +GKI LS K + Sbjct: 657 NKVEDVLEVGQEIEVKVMEIDQQGKINLSRKAL 689 >gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum ATCC BAA-798] gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum ATCC BAA-798] Length = 733 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 329/696 (47%), Positives = 458/696 (65%), Gaps = 13/696 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + E WAGR L +ETGRIA Q+ GAVL YG+TVVL T V + + DFFPLTV Y Sbjct: 2 ISKFETIWAGRKLSIETGRIAGQAHGAVLVQYGDTVVLTTAVRADAPSN-MDFFPLTVQY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YA GKIPGG++RRE RP+EN L +R+ DR +RPLF K YK E Q+I V+ D + Sbjct: 61 EERMYAAGKIPGGFIRREGRPSENATLAARLTDRPLRPLFPKGYKYEVQIITTVLSTDQQ 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182 + P ++S++ SAAL +S +PF GPV A+V YI+G+Y+LNP D+ + SL DL V+GT+ Sbjct: 121 NEPDLLSIIGGSAALSISDIPFLGPVGAARVGYIDGEYILNPTADQREESLLDLTVAGTK 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 DAV+MVE A++L E V+L A+ FGH + I+ +L + K D +++E Sbjct: 181 DAVIMVEGSAHELPESVMLGAVEFGHRMLQDTIKLQEQLVAVAGKPK---HHFDVPEVDE 237 Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVF 295 E + ++E L+ + P+K +R + I ++K +++ S+ + G + F Sbjct: 238 EFTARVREWLGDKLKEAVNNPDKVLREEAIAEVKANLIAAMISDDVADPADLTGAVAREF 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E + + VR +L++ VR DGR + +R +SA+VGLL RTHGS+LF RG TQ I VVTLG Sbjct: 298 ETLLKEEVRNRILNEGVRPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIISVVTLG 357 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 TR +EQ +D L + FM HYNF P +TGE+ + PSRR+IGHG L R++ PV+P Sbjct: 358 TRREEQILDDLGMEESKRFMHHYNFPPYSTGEIRPLRGPSRRDIGHGALVERSLLPVMPS 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFI 474 +FPYT+R+VSE+ S+GSSSM +VCGS+LALMDAGVPI PV+G+AMGLV D ++ Sbjct: 418 EEEFPYTVRVVSEVVSSNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTGPDGKYV 477 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT+ G+T +QMD+K GI+ +IM A +QA+ GR++IL + Sbjct: 478 ILTDIQGIEDALGDMDFKVAGTEKGVTGLQMDIKTTGITFDIMREAFEQAREGRMYILGK 537 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + E R L + PR+ M I P++I VIG GGK IR I + TG++++I+DDGT+ Sbjct: 538 MLEAIPEVRSTLSGYAPRILTMKINPEKIGAVIGPGGKTIRAITDATGSQIDIEDDGTIL 597 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I S++ E AR I +T EV ++Y G+VV +M +GAFV +DGLVHIS+LS Sbjct: 598 IYSTNAEGAEEARRRIEMLTRDIEVGQVYTGKVVGIMPYGAFVELAPGKDGLVHISELSD 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV + DVVK GD + V + D D GKI LS + V Sbjct: 658 TRVNRVEDVVKLGDEITVMVTDIDRNGKISLSRRAV 693 >gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter usitatus Ellin6076] gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076] Length = 701 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 308/693 (44%), Positives = 445/693 (64%), Gaps = 14/693 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H VE++ R + LETG++A+Q++GAV+ G+ VVL T K FFPLTV+Y+ Sbjct: 3 HIVEVDLGDRKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYR 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E TYA GKIPGG+++RE R +E E+L R+IDR IRPLF + + NETQ+I V+ D E Sbjct: 63 EYTYAAGKIPGGFIKREGRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQ 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P+ +++V +AAL +S +PF+ + G +V +GQY NP E + S L++ V+GT++ Sbjct: 123 DPNSLAIVGTAAALAISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASKLNIVVAGTEE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFS 238 ++MVE A ++SE VL AI FGH CK + I +L K+C K V+D ++ Sbjct: 183 GIVMVEAGAQEVSEAEVLGAIEFGHECCKKIAAGIRQLMKLCGKTKREFVSPVLDETIYA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E++ + + L EK + +KK+ + E F+ + Sbjct: 243 EVEKQARVDLTDALNTEKH--EKLASYALVASVKKRTIEALPDEQKEQG----AKCFDAL 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++ R ML K R DGR+ + +R I+ + G+L R HGS+LF RG+TQA+V VTLGT++ Sbjct: 297 KERIFRDDMLKKHRRPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKD 356 Query: 359 DEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ ++ L G FM+HYNF P + GEV M RREIGHG LA RA+ ++P Sbjct: 357 DEQRIELLEPGEASKRFMLHYNFPPFSVGEVGFMRGAGRREIGHGALAERALTALIPGED 416 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VS+ ES+GSSSMA +CG SLALM AGVP++ V G+AMGLV +G D+ IL+ Sbjct: 417 KFPYTMRVVSDTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILT 476 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI+G EDH G MDFKVAGT GIT MQMD+K+ I+ IM AL+QA+RGRL IL++M + Sbjct: 477 DIAGAEDHYGDMDFKVAGTRDGITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYE 536 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + ++ + ++ PR+ + IP D+IR+VIG GGKVIRGI+EQTG K++++DDGT+ +AS Sbjct: 537 AMPQANTAISQYAPRIYTLHIPTDKIRDVIGPGGKVIRGIIEQTGVKIDVEDDGTIHVAS 596 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A A ++I +T E+ K Y G+VV+++DFGAFV DGL+HIS+++ R+ Sbjct: 597 ADEASANKAIQIISDLTATAEIGKTYLGKVVRLVDFGAFVEIFPGTDGLLHISEIAENRI 656 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D +KEGD + VK L + KIKLS K V Sbjct: 657 KDVRDELKEGDQILVKCLALEGN-KIKLSRKAV 688 >gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 807 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/682 (45%), Positives = 451/682 (66%), Gaps = 13/682 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L +E GR+A+Q+DGAV+ YG+T++L T V R KD DF PLTV YQE+ Y+ G+IPG Sbjct: 98 LSIEVGRLAKQADGAVVVRYGDTMLLVTAVSAREKKD-VDFLPLTVEYQEKLYSAGRIPG 156 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 Y +RE R TE E L SR++DRS RPLF Y ETQ+I +V+ + E+ + + AS Sbjct: 157 SYFKREGRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDIHGITGAS 216 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL +S +PF GP+ G +V ++G++V NP L + +Q +DL ++ +++A++MVE A + Sbjct: 217 AALWVSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDIDLVMAVSREAIVMVEGGAEE 276 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE---D 251 +SE ++ A+ FG +P ++ +L + K V + + ++E + ++E D Sbjct: 277 VSEADMVAALEFGKQAVQPALDIQDELRRELGK--TVRSYEKLASIDEGLKAKVRELAWD 334 Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVRTV 306 V + I EK R + + KK+ ++ + ++ E V ED++ + +R + Sbjct: 335 GIVKGYGIKEKAARYESLGKAKKEAIAKLKEQLGDAYTPAVEKHAKQVVEDLKYEHMRQL 394 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +D R+ R VR I+ +VG+L RTHGS++F RG+TQA+VV TLGT EDEQ ++ L Sbjct: 395 TVDGG-RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSEDEQRLELL 453 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G FM+HYNF P + E + P RRE+GHG LA RA+ + P++ FPYT+R+V Sbjct: 454 GGMVFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMAPKSDSFPYTIRVV 513 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 S+I ES+GSSSMA+VCG +LALMDAGVPI PVAGIAMGLVK+GD ILSDI GDEDHL Sbjct: 514 SDILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAILSDILGDEDHL 573 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GIT++QMD+KI G++ IM AL+QA++GR+HIL EM K ++E R ++ Sbjct: 574 GDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRIHILGEMLKTMAEPRKEI 633 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 ++ PR+ + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V IAS++ +++A Sbjct: 634 SQYAPRITTIQIRPEYIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASANSDSVKSA 693 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 MI+++T E+ KIY G V K+ +FGAFV DGL+HIS+LS +RV SDV+KE Sbjct: 694 IAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVLKE 753 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 GD V VK++ D GKI+LS K Sbjct: 754 GDEVLVKVVSIDKTGKIRLSRK 775 >gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy] gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy] Length = 702 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 312/697 (44%), Positives = 458/697 (65%), Gaps = 17/697 (2%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 +V V + L ETG+IA+Q+ G V A Y + V+ATV + + D+ PL+V Sbjct: 1 MEVKKVSVRIGDADLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K + E QV+ V+ D Sbjct: 61 EYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTVVSSD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + ++P ++++ AASAA+ +S +PF GP+ ++ ++G YV+NP + ++ SLD+ V+G Sbjct: 121 MNNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS 238 T+D + MVE A ++SE+V+L+AI + +A +L K+ KE P+V + D S Sbjct: 181 TRDGITMVEGGAKEVSEEVMLEAIATAQPYITKLCDAQLELKKIAGKEKLPVVTLTVDLS 240 Query: 239 KL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVS 293 L E +IK+ + F+ K R + ++ ++ F S +G++ S Sbjct: 241 WLAPVREYAYPLIKQ----ASFVKGKMERYAALAKVQGEVKEKFQDVIAEDSKRDGQLSS 296 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +FED++ +++R +L+ R DGR + +R I+ +VGLL RTHGS+LF RG+TQA+ V T Sbjct: 297 LFEDLEYEILRASILNDGKRTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTT 356 Query: 354 LGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT DEQ D++ G + + FM+HYNF P + GE R+ + RREIGHG LA+RA+ + Sbjct: 357 LGTASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGECGRL-STGRREIGHGHLAQRALEAI 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P FPYT+R+VSEI ES+GSSSMA+VCG L+LMDAGVPI KPVAGIAMGL+ +G D Sbjct: 416 VPNKESFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGAD 475 Query: 473 F---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 + ++LSDI G+EDHLG MDFKVAG+ GITA QMD+KI G++ IM AL+QAK+GR+ Sbjct: 476 YSKYVVLSDILGEEDHLGDMDFKVAGSRDGITAFQMDIKIAGVTPEIMKKALEQAKQGRM 535 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL+ M LS SR ++ E+ P++ M + ++I VIG GGK I+ I Q+GA+VNI D Sbjct: 536 HILSIMEGALSNSREEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIASQSGAEVNIAD 595 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DGTV I A + A+E+++SI + PEV +IY+G V ++MDFGAF+ ++GL HI Sbjct: 596 DGTVTIYGRDNASAQLAKELVKSIVEEPEVGRIYEGTVKRIMDFGAFIEILPGKEGLCHI 655 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 S+L+ RV DV+K G V VKL++ D + ++ LS Sbjct: 656 SKLAKTRVQNVEDVLKVGQVVPVKLIEIDRQNRLNLS 692 >gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] Length = 718 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 306/691 (44%), Positives = 450/691 (65%), Gaps = 10/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ G+ L +E G +A+Q++GAVL Y +TV+L+TVV + K+ DFFPLTV Y+E+ Y Sbjct: 8 MDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKN-VDFFPLTVTYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+L+RE RP+E+ L +RMIDR IRPLF+ ++NE Q + V+ D +++P + Sbjct: 67 SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187 +M+ AS AL +S +PF GP+ G V ++G++++N ++ + SL +L V+GT+DA+ M Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAGTKDAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE +A ++SE+V+L+A++FGH + K +I K+ + C KE I I + + L EE++ Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNNDLVEEVAV 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300 K ++ + IP K R IDDL ++ + + E ++ + D++ Sbjct: 247 RAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGIILHDLEK 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + +Q+ LL R HGS+LF RG+TQ + V TLG + Sbjct: 307 DEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + FM HYNF P + GE RMGAP RREIGHG L RA+ V+P FP Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEEAFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSS A++C S++ALM AGVPI PVAG+AMGLVK GD + IL+DI Sbjct: 427 YTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAYTILTDIQ 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+ AL QAK R I+ M ++ Sbjct: 487 GMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMDAIA 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599 R +L + P+V++M I PDQI+ VIG GGK I I+EQ+ G K++I+ DGTV I Sbjct: 547 APRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGTVVIYHYD 606 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A I A E+I I +V ++Y G+VV+V D AF++ DG +HIS + ER K Sbjct: 607 QAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDYAYERTKK 666 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +V+K GD + VK+ DD+GK+ +S K + Sbjct: 667 MGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697 >gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] Length = 760 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 311/685 (45%), Positives = 450/685 (65%), Gaps = 10/685 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 G+P+ ETG++A Q+ GAV G+++V A ++G DFFPL+V Y+ER YA G Sbjct: 13 GGQPVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAGG 72 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 +IPG Y RRE +P+ IL +R+ DR +RPLF+K +NE QVI+ + D E+ ++ + Sbjct: 73 RIPGSYFRREGKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDILCI 132 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 AASAALM+S +P+ GPV ++ I+GQ+++NP + + S LDL ++GT+DA+LMVE Sbjct: 133 NAASAALMISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDLDLRIAGTRDAILMVEC 192 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIV-IDSKDFSKLEEEMS 245 A +++EDV++ A+ FGH +P+I+A ++A K P+ +D ++ E+ + Sbjct: 193 GAKEVAEDVMVQALQFGHEALQPLIDAQLQMAAEVGKPKREVPLFPLDPTLVDQVYEKAA 252 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ L +K + +D L+K++V ++ + E + + F ++ KVVR Sbjct: 253 GALEAALDAPH---DKAQLNEAVDALQKQIVEEMAAGDETLVE-PLKNAFTEVYKKVVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+K +R D R +R I +VG+ R HGS LF RG+TQ + + TLGT + Q +DS Sbjct: 309 RILEKGIRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDS 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L + +M HYNF P +TGEV + SRREIGHG LA RA+ PV+P +FPYTLR+ Sbjct: 369 LVPIETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHGALAERALEPVIPPEDEFPYTLRL 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ S+GS+SMA+VCGS+LALMD GVPI PVAG+AMGL+K+GD+ +IL+DI G EDH Sbjct: 429 VSEVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLIKEGDNAVILTDIQGLEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+ GITA+QMD+KI GI+ +M AL QA+ RL IL +M V+ R + Sbjct: 489 LGDMDFKVAGTEKGITALQMDIKIKGITPELMSRALAQAREARLDILKKMLAVIPAPRPE 548 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L PR+ I+ +P D+I +IG GGK+IR + E+T +++I+DDGTV IAS+ A A Sbjct: 549 LKPHVPRITILKVPVDKIGAIIGPGGKLIRALQEETNTRIDIEDDGTVYIASTDKAGEMA 608 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 ARE I ++T+ P+V +IY G+VV+V DFGAFV DG+VHISQL +ERV + DVV Sbjct: 609 ARERIEAVTETPQVGRIYTGKVVRVTDFGAFVEILPNVDGMVHISQLDSERVNRVEDVVN 668 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD V V + + D GKI+LS + V Sbjct: 669 VGDEVTVMVTNIDPDGKIRLSRQAV 693 >gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 699 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 309/701 (44%), Positives = 452/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSAGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINMPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I + + Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLP 240 Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 L + + E L+ + K R +D L+++++ F E + E E+ Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDVIL 300 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA R+ Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI++QTG+ V+I D Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I S E N++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7] gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7] Length = 714 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 306/691 (44%), Positives = 450/691 (65%), Gaps = 10/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ G+ L +E G +A+Q++GAVL Y +TV+L+TVV + K+ DFFPLTV Y+E+ Y Sbjct: 8 MDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKN-VDFFPLTVTYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+L+RE RP+E+ L +RMIDR IRPLF+ ++NE Q + V+ D +++P + Sbjct: 67 SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187 +M+ AS AL +S +PF GP+ G V ++G++++N ++ + SL +L V+GT+DA+ M Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAGTKDAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE +A ++SE+V+L+A++FGH + K +I K+ + C KE I I + + L EE++ Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNNDLVEEVAV 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300 K ++ + IP K R IDDL ++ + + E ++ + D++ Sbjct: 247 RAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGIILHDLEK 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + +Q+ LL R HGS+LF RG+TQ + V TLG + Sbjct: 307 DEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + FM HYNF P + GE RMGAP RREIGHG L RA+ V+P FP Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEEAFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSS A++C S++ALM AGVPI PVAG+AMGLVK GD + IL+DI Sbjct: 427 YTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAYTILTDIQ 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+ AL QAK R I+ M ++ Sbjct: 487 GMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMDAIA 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599 R +L + P+V++M I PDQI+ VIG GGK I I+EQ+ G K++I+ DGTV I Sbjct: 547 APRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGTVVIYHYD 606 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A I A E+I I +V ++Y G+VV+V D AF++ DG +HIS + ER K Sbjct: 607 QAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDYAYERTKK 666 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +V+K GD + VK+ DD+GK+ +S K + Sbjct: 667 MGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697 >gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile 630] gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-66c26] gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile CIP 107932] gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-63q42] gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile ATCC 43255] gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-76w55] gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-97b34] gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-37x79] gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile CD196] gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile R20291] gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-32g58] gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile] gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile CD196] gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile R20291] Length = 703 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 298/697 (42%), Positives = 459/697 (65%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++++AGR L +E G+I + G+ + Y +++V+ +DG DFFPL+ Sbjct: 1 MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ Y+VGKIPGG+L+RE +P+E IL SR+IDR IRPLF K ++N+ QV+ V+ Sbjct: 61 VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P +V+M+ +S AL +S +PF GP V ++G +V+NP ++ ++ S+ L VS Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSSMHLVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++A++MVE A+++ ++V+LDAI+F H E K ++E I + KE + ++ Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVE---LYH 237 Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293 EE++Q+++E ++ + EK R + +D +K++ +++F + + G+I Sbjct: 238 AGEEITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEE 297 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 V +DI + VR +++ + VR D R E +R I + G++ R HGS++F RG TQ + V T Sbjct: 298 VLQDIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVAT 357 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D Q +D L + +M HYNF + GE P RREIGHG LA RA+ PV+ Sbjct: 358 LGALGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVI 417 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ S+GS+S A+VCGS+L+L+DAGVPI VAGIAMGL+K Sbjct: 418 PSQEEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKV 477 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+ AL+QAK GR+HIL Sbjct: 478 AVLSDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILG 537 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM K +S+ + +L + P++ M I PD+I++VIG GGK+I I+++TG K++I+ G V Sbjct: 538 EMRKTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEV 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I+ + I+ A+E+I +I PEV K YKG+V ++M+FGAFV ++GL+HIS ++ Sbjct: 598 FISGIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERVAK DV+ GD V VK+ + D++G++ LS KV+ Sbjct: 658 HERVAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVL 694 >gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi str. Boryong] gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] Length = 740 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/696 (43%), Positives = 466/696 (66%), Gaps = 8/696 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +++W G L L TG+IAR +DGAVLA+ G T VL TVV+D++ K DFFPL Sbjct: 1 MFNEILKKVDWHGNVLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLG 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF ++N+TQ+I VM + Sbjct: 61 VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQIICTVMSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178 D SP +++++ +SAAL +SG+P P+ A+V +N +++LNP + ++ G LDL V Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + T D+V M+E +A ++ E+ +L AI FG+ KPVI AI ++ K+ + ++ Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE----IVS 293 + +E+ + D++ + + K R +Q+ +++K++ YFSS+ +S N+G+ I Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVIDYFSSKANSEANDGDDILNIEK 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +D ++K+ R ++L K R+ R + +R I + GL HGS+LF RGDTQ++ +T Sbjct: 301 ALDDAKSKIFRDLVLQNKTRIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATIT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ DEQ V+ L+ +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI V+ Sbjct: 361 LGSSTDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVI 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472 P FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI VAGIAMGLV +G+ Sbjct: 421 PSKDVFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNK 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F ILSDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++ +QAK G HIL Sbjct: 481 FEILSDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHIL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 N M+ +S + +L + P V+ + I ++IR+VIG+GGKVI+ + + +++I ++G Sbjct: 541 NVMNNTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGE 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 VK+ + ++ A + I +I VP++ I+ G+VVKV++ GAF+ + RDG VHIS++ Sbjct: 601 VKVWGNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEI 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + + + VK GD V VK++ D + ++KL+++ Sbjct: 661 NDTHIKDINAHVKLGDKVKVKIIGIDHKNRVKLTLR 696 >gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] Length = 702 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 295/688 (42%), Positives = 448/688 (65%), Gaps = 8/688 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +E G++A+Q++GA L Y +TVVL+ V + KD DFFPLTVNY E+ Y+ Sbjct: 10 EWAGRTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKD-VDFFPLTVNYDEKMYS 68 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE+RP+E L +R+IDR IRP+F++ ++NE Q+ VM D SP Sbjct: 69 VGKIPGGFIKREARPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAFS 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M +S +L +S +PF GP+ V ++G+Y++NP ++++ S + L V+GT+DA+ MV Sbjct: 129 AMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDIHLTVAGTKDAINMV 188 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247 E A ++SE+ +L A++FGH + ++ ++ KE + I + LE+E++ Sbjct: 189 ESGAAEVSEEDMLGALMFGHRAIQELVAFQEEIVAAVGKEKMNIQLLQIDADLEKEVNDA 248 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVSVFEDIQAKV 302 + + + EK R + I+ +K++ ++++ + E E+ + ED++ Sbjct: 249 YQSKMIAAIQTEEKLAREENIEAVKEEAMAFYEEHYQEHAEAKRINKEVKQIVEDMEKNE 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ K+R DGR + +R +++++GLL R HGS LF RG TQA+ V TL + Q Sbjct: 309 VRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATLAPLGEHQI 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L F+ HYNF + G P RREIGHG L RA+ V+P FPY Sbjct: 369 IDGLGVENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALSQVIPSEEDFPYM 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLVK+G+++ +L+DI G Sbjct: 429 IRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYTVLTDIQGL 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ ILNE++ ++E Sbjct: 489 EDHLGDMDFKVAGTSKGITALQMDIKIEGITEQILEEALIQAKKARMEILNELTSTIAEP 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 +L F P++E+M I P++I+ VIG GG I I+++TG K++ID +G + IAS A Sbjct: 549 HEELSAFAPKIEMMQIKPEKIKVVIGRGGDQINAIIDETGVKIDIDQEGKISIASEDAAM 608 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+ A+E+I +T EV K+Y G+V ++ FGAFV +DGL+HIS+++ ERVAK D Sbjct: 609 IKRAKEIIEELTKDIEVGKVYSGKVKRIEKFGAFVEIAKGKDGLLHISEIANERVAKVED 668 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ G+ + VK+++ D +G+I LS KV+ Sbjct: 669 VLALGEVMDVKVIEIDKQGRINLSRKVL 696 >gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 690 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 310/691 (44%), Positives = 449/691 (64%), Gaps = 15/691 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E++ GR L +ETG++A+ ++GA YG+TV+L T K+G DFFPL+V+++E+ Sbjct: 6 EMQLGGRTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+ GKIPG ++RRE +P+E IL SR+IDR IRPLF K Y+N+ QV+ V+ D++ +P Sbjct: 66 YSAGKIPGSFIRREGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 ++M+ +S AL +S +PF GP V ++GQ+++NP ++ + S + L VSGT+DA++ Sbjct: 126 TIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSDMYLVVSGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD----FSKLEE 242 MVE +N++SE+V+L+AI+F H E K + + + +A KE KD F LEE Sbjct: 186 MVEAGSNEVSEEVMLNAILFAHEEIKKICDFVQSIANEIGKE------KDEYYVFKPLEE 239 Query: 243 ---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++ + ++ + +K R ++ +K + + +F E N ++ V I Sbjct: 240 VEVAVTEFASQKMKDAIKTVDKQERQDNMEKVKDETMEHFE-EIFPDNMKDVDEVIYSIT 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 + VR +++ KVR D R E +R I + G+L RTHGS++F RG TQ + V TL + Sbjct: 299 KREVRNMIVKDKVRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA+RAI P+LP +F Sbjct: 359 AQTIDGLDEEEERRYMHHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSE+ S+GS+S A+VCGS+L L+DAGVP+ VAGIAMGL+KD +D +ILSDI Sbjct: 419 PYTIRVVSEVMSSNGSTSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDVVILSDI 478 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKVAGT+ GITA+QMD+KI GI E+I+ AL QA+ GRLHIL EM KV+ Sbjct: 479 QGMEDFLGDMDFKVAGTEKGITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRKVI 538 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R L + P + M I PD+IR VIG GGKVI I+++TG K++ID+DG V I S+ Sbjct: 539 DKPRESLSPYAPMIINMMINPDKIREVIGTGGKVINKIIDETGVKIDIDNDGKVSILSND 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 A+ +I I PEV KIY G++ K+M FGAFV ++GL+HISQ+ +RVAK Sbjct: 599 QEMCMKAKAIIEGIVAEPEVGKIYSGKITKIMQFGAFVEILPGKEGLLHISQMDKQRVAK 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+ KEGD+V VKL + D +G++ LS KV+ Sbjct: 659 VEDLFKEGDSVEVKLTEIDSQGRLNLSRKVL 689 >gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 755 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 324/712 (45%), Positives = 458/712 (64%), Gaps = 36/712 (5%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ IEW GR L LETG+IARQ+DG+V+ YG+T +L TVV + ++ DF PL Sbjct: 1 MFEIIKKSIEWGGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EEIVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+G+IPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E ++ N++ + Sbjct: 60 VQFIAKSYAMGRIPGGFFKREGKPSDRETLISRVIDRSIRPLFLEGFHDEISIVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178 D + P V +++ A AAL +SG+PF + G V N Y+LNP + E + SLDLF+ Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKVSSLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVID 233 SG + ++LMVE EA +L E+ +L+AI FGH +PVI+ I + A K + PI I Sbjct: 180 SGDERSILMVESEAKELPEENILNAIKFGHEHLQPVIKLIKEFADTIGNKFDSFAPIDIS 239 Query: 234 ---------SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 SKDF EE SQ +K++ R + ++ ++ +++ + + Sbjct: 240 DIMQDLEKHSKDF---EEAYSQTVKQE------------RAQTLETIRNNILNPL--KEA 282 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 +E I ++ + ++R ++ +K R+DGR + +R I +V +L RTHGS+LF RG Sbjct: 283 GKDEKLITQAVKNFERSLLRKIIREKGTRIDGRKYDEIRQIEVEVDILSRTHGSALFTRG 342 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 TQA+VV LGT +DEQ VD + G +R FM+HYNF A G+ S + AP RREIGHG+L Sbjct: 343 STQALVVTALGTTQDEQIVDDIEGDRREHFMLHYNFPSFAVGDASAIRAPGRREIGHGKL 402 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A +AIHPVLP ++FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI PVAGIAM Sbjct: 403 AWKAIHPVLPDKSEFPYTIRVVSEIMESDGSSSMATVCGTSLALMDTGVPIKSPVAGIAM 462 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+KD +D++ILSDI GDED+LG MDFKVAGT GITA+QMDMKI GIS I+ +L+QA Sbjct: 463 GLIKDKNDYVILSDILGDEDYLGDMDFKVAGTSEGITALQMDMKISGISFEIVEKSLEQA 522 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K GRLHIL +M+ V+SE + PR+ I D+I IG GK IR + E++ AK Sbjct: 523 KAGRLHILEKMNSVISEHSDDVKGHAPRMVSFYIDKDKISAAIGAKGKNIRSVCERSNAK 582 Query: 585 VNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 + I DDG V + + S AE E A+ MI SIT++ E I +VVK+ + R Sbjct: 583 IEIGDDGKVSVFAMSSAEAEIAKNMMIDSITEL-EQGAIVDVKVVKIDKSIVELELFNGR 641 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G +HIS+++ + + ++K+GDT ++DF+ G KLS + VDQ TG Sbjct: 642 KGKMHISEVANQHIESIESILKQGDTFKALVIDFEKGGCPKLSRRRVDQETG 693 >gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-23m63] gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP08] gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP07] gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP08] gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP07] Length = 703 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 297/697 (42%), Positives = 459/697 (65%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ ++++AGR L +E G+I + G+ + Y +++V+ +DG DFFPL+ Sbjct: 1 MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ Y+VGKIPGG+L+RE +P+E IL SR+IDR IRPLF K ++N+ QV+ V+ Sbjct: 61 VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P +V+M+ +S AL +S +PF GP + ++G +V+NP ++ ++ S+ L VS Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSSMHLVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++A++MVE A+++ ++V+LDAI+F H E K ++E I + KE + ++ Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVE---LYH 237 Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293 EE++Q+++E ++ + EK R + +D +K++ +++F + + G+I Sbjct: 238 AGEEITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEE 297 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 V +DI + VR +++ + VR D R E +R I + G++ R HGS++F RG TQ + V T Sbjct: 298 VLQDIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVAT 357 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D Q +D L + +M HYNF + GE P RREIGHG LA RA+ PV+ Sbjct: 358 LGALGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVI 417 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ S+GS+S A+VCGS+L+L+DAGVPI VAGIAMGL+K Sbjct: 418 PSQEEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKV 477 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +LSDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+ AL+QAK GR+HIL Sbjct: 478 AVLSDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILG 537 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM K +S+ + +L + P++ M I PD+I++VIG GGK+I I+++TG K++I+ G V Sbjct: 538 EMRKTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEV 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I+ + I+ A+E+I +I PEV K YKG+V ++M+FGAFV ++GL+HIS ++ Sbjct: 598 FISGIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIA 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERVAK DV+ GD V VK+ + D++G++ LS KV+ Sbjct: 658 HERVAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVL 694 >gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] Length = 703 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/695 (45%), Positives = 457/695 (65%), Gaps = 17/695 (2%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL-KDGQDFFPLTVNYQE 65 VE G+ L +ETG A+Q+DGA + G+T+VLAT V + K+ DF PLTVNYQE Sbjct: 4 VERTINGKKLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFLDFLPLTVNYQE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+++RE +PT +E L+SR+IDRSIRPLF K YK E QVII + D E+ Sbjct: 64 RFYAAGKIPGGFVKREGKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQEND 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSLDLFVSGTQDA 184 P ++S++AAS +L LS +PF GPV G +V + NG + D L+L ++GT+DA Sbjct: 124 PAIISILAASCSLCLSDIPFLGPVAGVRVSRFENGLKAFASLKEIDDSRLNLILAGTKDA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239 + M+E A +LSED ++DAI+FG + +++A ++ K AK PI + +K Sbjct: 184 INMIEAGAGELSEDEMVDAIMFGKDNIDILLDAQEEIIKKAAKPKREYIPIDVSEDIVNK 243 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQI----DDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +E ++L + I EK R I + +K+K+V F E + + F Sbjct: 244 IE----AFAADELMRAVNIKEKKKRNSTIEAIFNKVKEKVVEEFEDEDFIEEK--TAAAF 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ED+ +VRT +++ VR+DGR + +R I+ +VG+L R HGS++F RG+TQA+V TLG Sbjct: 298 EDVVKNIVRTKIINTGVRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLG 357 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 +RED Q +D +S FM+HYNFLP +TGEV R+G P RREIGHG LA+RAI P+LP Sbjct: 358 SREDAQIIDDVSEEGYERFMLHYNFLPFSTGEVKRLGPPGRREIGHGNLAKRAIEPMLPS 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPY +R+VS+I ES+GSSSMATVCGS+L+LMDAGVPI KPV+G+AMGL+K + I Sbjct: 418 EDDFPYAIRVVSDILESNGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLIKYEGGYAI 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDH G MDFKVAGT GITA+QMD+KI G+ ++ AL +AK RL ILN+M Sbjct: 478 LTDILGDEDHYGDMDFKVAGTKDGITALQMDIKITGVDAVLLKEALYKAKEARLFILNKM 537 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 VL R + + P++ + I P++I+++IG GGK I+ I+E+T K++I+ DG + + Sbjct: 538 LAVLDSPRPDISPYAPQIRTLTIEPEKIKDLIGPGGKTIKSIIERTNVKIDINPDGKINV 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + ++++ A E+I+S+T + + +G V ++ +GAF+ ++GL+HISQ+S + Sbjct: 598 YGTMDSKLDEAMEIIKSLTTTIKEGDVIEGVVTRIEKYGAFIKLLPNKEGLLHISQISND 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV+ DV+ GD + VK+ + D+ G+I LS K++ Sbjct: 658 RVSNIYDVLNIGDKIRVKVTNIDELGRIALSRKIL 692 >gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium ATCC 27725] gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium ATCC 27725] Length = 699 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 320/708 (45%), Positives = 452/708 (63%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD VE+E AGR L TG+IARQS GAV+ YGETV+L+TV + + G DFFPLT Sbjct: 1 MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RE RP+ N L +R+IDR IRP+F + + ++ ++ V + Sbjct: 61 VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179 D +++P + ++ +S ALMLS LPF GPV G V Y NG+++LNP + + L+L V+ Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSELELSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 G++DAV MVE A +L E+ +L AI+F H K + + AK+ KE IV Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIVF------- 233 Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--- 288 ++EE+ ++K E L+ + K R + +D L+++++ F E+ E Sbjct: 234 VKEEVLPLVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGVEEED 293 Query: 289 ------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 GE + D+ K+VR +L K R+DGR + +R + A+ G+L HGS++F Sbjct: 294 IPEEVIGEFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAETGVLPIPHGSAMFT 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQAIVV TLGT+EDEQ VD L F +HYNF P + GE RMG+P RRE+GHG Sbjct: 354 RGETQAIVVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 414 SLAERALSYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+ Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALK 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R IL M+ +S + L PR+ M I D+I +IG GGK I+GI+E+TG Sbjct: 534 QALDARNEILVVMNNAIS-APADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTG 592 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A ++I DDG V I S ++ ++ + EV +IY G+VV + FGAF+ Sbjct: 593 ATIDISDDGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPG 652 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+H+S++S ERVA DV+K GD VK++ ++ GKI LS K + Sbjct: 653 KEGLLHVSEISNERVANVEDVLKVGDKFDVKVISTEN-GKISLSKKKI 699 >gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens DSM 2228] Length = 696 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 303/686 (44%), Positives = 462/686 (67%), Gaps = 11/686 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I++AG +TG++A+Q++G+V+ G++ VL T V D + G ++FPL VNY+ER Y Sbjct: 6 IDYAGDQFNFQTGKLAKQANGSVVVRCGDSQVLVTAVMDEP-RPGMNYFPLMVNYEERVY 64 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A+G+IPG +RRE RP + L +R+IDRSIRPLF + ++++ Q++ ++ D + P V Sbjct: 65 AIGQIPGSVMRREGRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDDHDPEV 124 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ ASAAL LS +PF GP+ G +V ++ Q ++NP +E + S LDL V+G++DA++M Sbjct: 125 LALNGASAALTLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLDLVVAGSKDAIMM 184 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 VE AN++SE VL+A+ H E K +I ++ + + E +DS+ SK++E Sbjct: 185 VEASANEVSEATVLEAMKVAHAEIKKIISLQEEMRQEAGEDKFHFESPTVDSEIQSKVDE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + +KE +++ EK R +ID+LK ++ + + + S + +I FE + K Sbjct: 245 ILGNKLKEAIQIQ----EKQARSDKIDELKAELKATINPDEESELDSQIGMAFEKMLKKS 300 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 V++++++ +R DGRD + +R I A+V + R HGS +F RG+TQA+ V+TLG+ DEQ Sbjct: 301 VKSLVVEDGIRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQT 360 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 + L + +M HYNF GE S M +P RREIGHG L +A+ PV+P +FPYT Sbjct: 361 LFGLGENETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPSEEEFPYT 420 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +RIVSE+ ES+GSSS A++CGSSLALM AGVPI PVAGIAMGL+K DD +ILSDI G Sbjct: 421 IRIVSEVLESNGSSSQASICGSSLALMAAGVPIKAPVAGIAMGLMKKDDDVVILSDIQGF 480 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED G MDFKVAGT++GITA+QMD+K+ G+S +I+ AL++AK+GR+HI+ +M V+ E+ Sbjct: 481 EDFNGDMDFKVAGTEAGITALQMDIKLKGLSYDILEEALEKAKKGRMHIMGKMLDVIPEA 540 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L E P + M I P++IR VIG GGK+I I+++TGA ++I+DDG VKI + Sbjct: 541 RPELSENAPAIITMNIDPEKIRFVIGPGGKMINKIIDETGASIDIEDDGLVKIMTDDQEG 600 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A+EMI +T+ EV KIY+G+V ++M+FGAFV ++GLVHIS+L+ V + D Sbjct: 601 GQQAQEMIARLTEEVEVGKIYQGKVKRIMNFGAFVEILPNKEGLVHISKLADRHVKEVGD 660 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 +V GD + VK+++ D++ +I LS+K Sbjct: 661 IVSVGDEIPVKVIEIDNQDRINLSLK 686 >gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp. Re1] gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp. Re1] Length = 700 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 312/681 (45%), Positives = 453/681 (66%), Gaps = 3/681 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E GR L +ETG++A+Q++G+V+ Y +TV+L T + ++G DF PLT++Y+E+ YA Sbjct: 7 EIGGRKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEKLYA 66 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE +P+E IL +R+IDR +RPLF K ++N+ QVI V+ D +++P +V Sbjct: 67 VGKIPGGFIKREGKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPDIV 126 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 ++ AS AL +S +PFEGPV V I+G+YV+NP + E + S L L V+GT++AVLMV Sbjct: 127 AINGASCALCISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSRLRLVVAGTKEAVLMV 186 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQM 247 E A+++SE+ +L AI++GH E K +I ++ K + I +++ +LE+ + + Sbjct: 187 EAGADEVSENEMLSAILYGHEEIKKIIAFQEEIINEIGKTKMEITAEEIDDELEKSVREF 246 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 ED+ + I +K R ID + + + +F + E +I V DI + VR ++ Sbjct: 247 ATEDILKAIRIYDKQEREAYIDKINEDTLLHFQDIYPD-TEKQITDVLYDILKEEVRKMI 305 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + +R DGR +R IS +VG+L RTHGS LF RG TQ + V TLG D Q +D L Sbjct: 306 SYEGIRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLG 365 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + +M HYNF P +TGE + P RREIGHG LA RA+ P++P FPYT+R+VS Sbjct: 366 IEESKRYMHHYNFPPYSTGETKVIRGPGRREIGHGALAERALEPMIPSEEDFPYTIRLVS 425 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ S+GSSSMA+VCGS+LALMDAGVPI PV+G+AMGL+K GD IL+DI G ED LG Sbjct: 426 EVLSSNGSSSMASVCGSTLALMDAGVPIKAPVSGVAMGLIKQGDKVTILTDIQGMEDFLG 485 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT +GITA+QMD+KI GI E+I+ ALQQA+ GRL I+++M V+ E R +L Sbjct: 486 DMDFKVAGTKNGITAIQMDIKIKGIDEDILKSALQQAREGRLFIMDKMLSVIPEPRKELS 545 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 + PR+ + + PD+IR++IG GGK I I+ +T K++I+DDG V I++ + A Sbjct: 546 AYAPRIFTITVDPDKIRDIIGPGGKTINKIIAETNTKIDIEDDGKVYISAPEESAGIKAM 605 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E+I IT EV +IY G++++ +FGAF ++GL+HIS+LS ERV + DVVK G Sbjct: 606 EIIDKITQDVEVGRIYMGKIMRTTNFGAFAEILPGKEGLIHISKLSKERVKRVEDVVKVG 665 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 D + VK+ D D +G+I LS K Sbjct: 666 DEILVKVTDIDKQGRINLSHK 686 >gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer DSM 44963] gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer DSM 44963] Length = 816 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/691 (43%), Positives = 456/691 (65%), Gaps = 7/691 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H E GR + +ETGR+A QS GAVL YG+TV+LAT V ++G DFFPLTV+ Sbjct: 2 IHRQEAVIGGRVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDV 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YA GKIPGG+++RE R TE+ IL SR+ DR +RPLF K Y+N+ Q++I V+ D E Sbjct: 62 EERMYAAGKIPGGFIKREGRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQE 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P ++ +V ASAAL +S +PF GPV +V Y++ Q+V+NP + LDL ++GT Sbjct: 122 NDPDIMGIVGASAALSISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSKLDLAIAGTA 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241 DA++MVE A +L ED++L+A+ GH + +++ KL ++C K + ++L+ Sbjct: 182 DAIMMVEAGAKELPEDMMLEALRVGHEALQDLVKMQEKLVQVCGKPKRTFAAPVPDAELQ 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++++ ++ + +K R + ++ ++V+ +++ + EI+ +E Sbjct: 242 GKVAEFVRPRFEAAVNNSDKTARSASLSQVQDELVTELGTQYPDRLK-EIIGFYEKELKA 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR +LD +R DGRD++T+R+I+ +VGLL RTHGS+LF RG TQ + V+TLG+ +EQ Sbjct: 301 YVRNTILDSGIRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L FM HYNF P +TGE + P RREIGHG LA RA+ PV+P +FPY Sbjct: 361 VLDGLGTNDNKRFMHHYNFPPYSTGESKPLRGPGRREIGHGALAERAVSPVIPTQEEFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGD---DFIILS 477 T+R VS+I S+GS+SM +VCG++LALM+AGVPI PVAG+AMGL+ +G+ + +LS Sbjct: 421 TIRAVSDILSSNGSTSMGSVCGTTLALMEAGVPIHAPVAGVAMGLITGEGEREGKWAVLS 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED LG MDFKVAGT G+TA+QMD+K+ GI+ ++M AL+QA GR+ I+ +M Sbjct: 481 DIQGIEDALGDMDFKVAGTADGVTALQMDIKVKGITYDVMAKALEQAHEGRMFIMEKMLD 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R +L + PR++ + I D+I VIG GGK+IR I +++GAK++I+DDGTV IA+ Sbjct: 541 AIDAPREELSIYAPRIQSIKINSDKIGAVIGPGGKMIRKIQDESGAKIDIEDDGTVNIAA 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S ++ A + +R++T+ EV +IY G V +++DFG FV ++GLV SQL+ +V Sbjct: 601 TSGEAMQRAMDAVRALTEEVEVGRIYTGTVRRLVDFGCFVEILPGKEGLVRTSQLADYQV 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + DVV GD + V +++ D +G++ LS + Sbjct: 661 MRPEDVVSLGDEITVMVIEVDGQGRVNLSRR 691 >gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium hafniense DCB-2] gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium hafniense DCB-2] Length = 723 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/694 (45%), Positives = 448/694 (64%), Gaps = 16/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ GR + +TG+I +Q+ GA+ YG+TVV A ++G DFFPLTV ++ER Y Sbjct: 10 IQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLY 69 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP+E IL +R+IDR IRPLF + Y+N+ QV+ VM D + + + Sbjct: 70 AAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASDI 129 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 + AASAAL +S +PFEGPV V I ++++NP +++ + S + L V+GT+DAV+M Sbjct: 130 TGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGTKDAVMM 189 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244 VE A ++ E +L+AI+FGH E + + E I ++ A E + K ++ EE+ Sbjct: 190 VEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENY-RLEALERNLAKPKQEVVMKQMPEEI 248 Query: 245 SQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 Q +K + + + EK R + I +K++ +++F+ ++ + I + ED Sbjct: 249 VQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPE-DLKTIDKILEDFVH 307 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR ++ + +R DGR + +R IS +VG+L RTHG+ LF RG TQ + V TLG DE Sbjct: 308 KIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDE 367 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + +M HYNF P + GE M P RREIGHG LA RA+ PV+P FP Sbjct: 368 QILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPNENDFP 427 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+ PVAGIAMGL+ + + ILSDI Sbjct: 428 YTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSDIQ 487 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT G+TA+QMD+KI G+S I+ AL QAK GRL IL++M V+ Sbjct: 488 GMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLSVIE 547 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + R +L F PR+ +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I++ Sbjct: 548 KPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFISAVDG 607 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLST 654 E A ++I+++T EV +IY G+V ++MDFGAFV ++GLVHISQL+ Sbjct: 608 EAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAH 667 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVVK GD + VK D +G++ LS K Sbjct: 668 GRVEKVEDVVKLGDEILVKATGIDKQGRLNLSRK 701 >gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi str. Ikeda] gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi str. Ikeda] Length = 736 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 300/694 (43%), Positives = 467/694 (67%), Gaps = 8/694 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +++W G L L TG+IAR +DGAVLA+ G T VL TVV+D++ K DFFPL Sbjct: 1 MFNEILKKVDWHGNMLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLG 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF ++N+TQVI VM + Sbjct: 61 VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVICTVMSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178 D SP +++++ +SAAL +SG+P P+ A+V +N +++LNP + ++ G LDL V Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + T D+V M+E +A ++ E+ +L AI FG+ KPVI AI ++ K+ + ++ Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---F 295 + +E+ + D++ + + K R +Q+ +++K+V YFSSE + ++ I+++ Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVVDYFSSEAN--DDDAILNIEKAL 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 +D+++K+ R ++L K R+ R + +R I + GL HGS+LF RGDTQ++ +TLG Sbjct: 299 DDVKSKIFRDLVLQDKTRIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + DEQ V+ L+ +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI V+P Sbjct: 359 SSTDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVIPS 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFI 474 FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI VAGIAMGLV +G+ F Sbjct: 419 KDVFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNKFE 478 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++ +QAK G HILN Sbjct: 479 ILSDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHILNV 538 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M+ +S + +L + P V+ + I ++IR+VIG+GGKVI+ + + +++I ++G VK Sbjct: 539 MNNTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGEVK 598 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + ++ A + I +I VP++ I+ G+VVKV++ GAF+ + RDG VHIS+++ Sbjct: 599 VWGNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEIND 658 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + + VK GD V VK++ D + ++KL+++ Sbjct: 659 THIKDINAHVKLGDKVKVKIIGIDHKNRVKLTLR 692 >gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium hafniense Y51] gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 727 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/694 (45%), Positives = 449/694 (64%), Gaps = 16/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I+ GR + +TG+I +Q+ GA+ YG+TVV A ++G DFFPLTV ++ER Y Sbjct: 10 IQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLY 69 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP+E IL +R+IDR IRPLF + Y+N+ QV+ VM D + + + Sbjct: 70 AAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASDI 129 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 + AASAAL +S +PFEGPV V I ++++NP +++ + S + L V+GT+DAV+M Sbjct: 130 TGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGTKDAVMM 189 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244 VE A ++ E +L+AI+FGH E + + E I ++ A E + K ++ EE+ Sbjct: 190 VEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENY-RLEALERNLAKPKQEVVMKQMPEEI 248 Query: 245 SQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 Q +K + + + EK R + I +K++ +++F+ ++ ++ I + ED Sbjct: 249 VQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPEDSK-TIDKILEDFVH 307 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR ++ + +R DGR + +R IS +VG+L RTHG+ LF RG TQ + V TLG DE Sbjct: 308 KIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDE 367 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + +M HYNF P + GE M P RREIGHG LA RA+ PV+P FP Sbjct: 368 QILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPDENDFP 427 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+ PVAGIAMGL+ + + ILSDI Sbjct: 428 YTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSDIQ 487 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT G+TA+QMD+KI G+S I+ AL QAK GRL IL++M V+ Sbjct: 488 GMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLSVIE 547 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + R +L F PR+ +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I++ Sbjct: 548 KPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFISAVDG 607 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLST 654 E A ++I+++T EV +IY G+V ++MDFGAFV ++GLVHISQL+ Sbjct: 608 EAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAH 667 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVVK GD + VK D +G++ LS K Sbjct: 668 GRVEKVEDVVKLGDDILVKATGIDKQGRLNLSRK 701 >gi|309790622|ref|ZP_07685176.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris trichoides DG6] gi|308227350|gb|EFO81024.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris trichoides DG6] Length = 763 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 320/699 (45%), Positives = 456/699 (65%), Gaps = 16/699 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V+TV E AGR L LE GR A Q+DGAV YG+TV+LATVV + ++G DFFPLTV+Y Sbjct: 15 VYTVSTEIAGRTLTLEAGRFAEQADGAVTVRYGDTVLLATVVAAKEPREGIDFFPLTVDY 74 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+ GKIPG + +RE RPT IL SR+ DR +RPLF K Y NE QVII D+ Sbjct: 75 EERMYSAGKIPGNFFKREGRPTTTAILTSRLTDRPLRPLFPKGYYNEVQVIITTFSIDMV 134 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P ++++ ASAAL +S +PF+GPV Q+ +++G+ NP + E ++ LDL V+GT+ Sbjct: 135 NDPGPMAIIGASAALAISDIPFKGPVGAVQMTHLDGKVAANPPMSELERSRLDLVVAGTK 194 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 DAVLMVE A +L+ED +L+A++ GH CK + E +L ++C K P +D+ Sbjct: 195 DAVLMVEAGAYELTEDEMLEAVMQGHAVCKQLCELQEELVRLCGKPKREFVPPAVDTS-- 252 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVS 293 LEE +S + + LR + K R ++ LK ++V++FS+ E ++ Sbjct: 253 --LEETISAWMGKRLREAVRSKSKQEREERTAALKAEVVAHFSADEPEEELPTRIKDVSK 310 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 FE + + VR +LD+ +R+DGR + +R IS VG++ R HG+ LF RG TQ + V T Sbjct: 311 AFEKLLKEEVRNAILDEGIRVDGRATTEIRPISVDVGVIPRVHGTGLFHRGQTQVLTVTT 370 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ +EQ +D L ++ HYNF P +TGE RMG+P RR+IGHG LA R+++ VL Sbjct: 371 LGSPGEEQRLDDLGIETSKRYIHHYNFPPFSTGEAKRMGSPRRRDIGHGALAERSLYAVL 430 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472 P +FPYT+R+VSE+ S+GSSSMA+VCGSSL+LMDAGVPI +PVAG+AMGL+ D D Sbjct: 431 PTLEEFPYTMRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKRPVAGVAMGLITDPDGR 490 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI G ED LG MDFKVAGT GIT +QMD+K GI+ +IM A QA+ GRL IL Sbjct: 491 WTVLTDIQGLEDALGDMDFKVAGTSEGITGLQMDIKTTGITYDIMRQAFAQARDGRLFIL 550 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M+ V++ R +L F PR+ + IP ++I +IG GGK IR I+E TGA+++++DDG Sbjct: 551 DKMNAVINSPRSELSPFAPRIITVQIPVEKIGALIGPGGKTIRSIIEATGAQIDVEDDGR 610 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IA+S + A M+ +T ++ ++ G+VV + FGAFV +DG+VHIS+L Sbjct: 611 VFIATSDGEAAQKALAMVEGLTREAKIGDVFLGKVVSIKPFGAFVSILPGKDGMVHISEL 670 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 S R+ DV++ GD + V ++D D GKI LS + V Sbjct: 671 SENRIENVEDVIQVGDEINVMVIDVDRVSGKISLSRRAV 709 >gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aurantiacus J-10-fl] gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp. Y-400-fl] gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp. Y-400-fl] Length = 755 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 330/700 (47%), Positives = 462/700 (66%), Gaps = 16/700 (2%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 ++++V E AGR L LE GR A Q+DGAV+A YG+T++LATVV + ++G DFFPLTV+ Sbjct: 5 NIYSVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVD 64 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+E+ YAVGKIPG + +RE RPT ILISR+ DR +RPLF K + NE QVII D+ Sbjct: 65 YEEKMYAVGKIPGNFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDM 124 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181 E+ P ++++AASAAL +S +PF GPV Q+ ++NGQ V+NP+++E S LDL V+GT Sbjct: 125 ENDPGPLAIIAASAALCISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIADSRLDLVVAGT 184 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKD 236 +DAVLMVE A +L+ED +L A+I GH CK + + +L ++C K P V+D+ Sbjct: 185 KDAVLMVEAGAYELTEDEMLQAVIDGHAVCKQICDLQEQLVQLCGKPKRPFTPPVVDTS- 243 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIV 292 LEE +S + + LR + P K R Q + LK +++++F++ E + E+ Sbjct: 244 ---LEEAISAWMGDRLRKAVRSPIKQEREAQTEALKAEVIAHFTADEPEEEIANRTKEVT 300 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 FE + VR +LD+ +R+DGR + +R IS +VG++ R HGS++F RG TQ + + Sbjct: 301 KAFEKLLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTIT 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ VD L ++ HYNF P +TGEV R+G P RR+IGHG LA R+++ V Sbjct: 361 TLGSPGDEQKVDDLGIETSKRYIHHYNFPPFSTGEVRRIGTPRRRDIGHGALAERSLYAV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+R+VSE+ S+GSSSMA+VCGSSL+LMDAGVPI PVAG+AMGL+ D Sbjct: 421 LPDEKDFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDG 480 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G ED LG MDFKVAGT G+T +QMD+K GI+ IM A QA+ GRL I Sbjct: 481 RWRVLTDIQGLEDALGDMDFKVAGTAKGVTGLQMDIKTTGITYEIMREAFAQARAGRLFI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M++V+S R +L + PR+ + IP D+I +IG GGK IR I E TGA+++I+DDG Sbjct: 541 LDKMNEVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICETTGAQIDIEDDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I + A A MI +T +V I+ G+VV + FGAFV+ +DG+VH+S+ Sbjct: 601 RVFITTPDGAAARQAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 L +RV DVV GD + V ++D D GKI LS + V Sbjct: 661 LDEKRVENVEDVVSLGDEINVMVIDIDRTTGKISLSRRAV 700 >gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748] gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748] Length = 689 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 306/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF K +NE V+ VM D + P Sbjct: 64 YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ ING++++NP ++ + + L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDIPWNGPIAGVRMGRINGEFIVNPTKEQLEATDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ E+ +L+ I+ H E K ++ + KE V +SKD +++ E + Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIAEAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q +++ ++++F + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ + Q +D Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + ++ HYNF + GE P RREIGHG LA RA+ PV+P +FPY LR+ Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIRGI+++TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIDETGAKIDIEDDGTVFIASVDQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G+I LS K Sbjct: 663 VGDEIMVKVIEIDKQGRINLSRK 685 >gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 699 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 306/701 (43%), Positives = 453/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E GR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELVGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I + + + Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIV----- 292 +++ + E L+ + K R +D L+++++ F + E E+ Sbjct: 241 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQKNYPDVPEEELPEDIIL 300 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 421 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QA + R+ Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITKEIMRIALNQAHQARI 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI+EQTGA V+I D Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTGATVDITD 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E +++ S E N++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 600 DGLVSVFAKDAETLEKTLKLVDSYVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus iheyensis HTE831] gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain [Oceanobacillus iheyensis HTE831] Length = 705 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 302/690 (43%), Positives = 454/690 (65%), Gaps = 4/690 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E +G+ +E G +A+Q++GA + YG+T VL+ KD FFPLTVNY+ER YA Sbjct: 11 EISGKKFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKD-LPFFPLTVNYEERLYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE RP+E IL SR+IDR IRPLF ++NE QVI VM D + + Sbjct: 70 VGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PFE P+ G V ++G++++NP ++++ S ++L V+GT+DA+ MV Sbjct: 130 AMIGSSIALSVSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIELTVAGTKDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247 E AN++ ED++L+AI+FGH E K ++ +L K C ++ V+ ++ +L E + Sbjct: 190 EAGANEVPEDIMLEAIMFGHEEIKRLVAFQEELVKACGQDKFDVVLAESEEELVENVHSE 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTV 306 K+ + + + EK+ R + I K ++V+++ + + ++ S+ + + + VR + Sbjct: 250 AKDKIVNAIQVQEKHARDEAIKQAKNEIVAHYEEQEVEEDVIKQVKSILDSMVKEEVRRL 309 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + +K+R DGR + +R +S+++ +L RTHGS LF RG TQA+ V TLG D Q +D L Sbjct: 310 ITKEKIRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL 369 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + FM HYNF + GE + P RREIGHG L RA+ V+P +FPYT+R+V Sbjct: 370 DLEESKRFMHHYNFPQYSVGETGPIRGPGRREIGHGALGERALEKVIPDDKEFPYTIRLV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GS+S A++C S+LA+MDAGVPI PVAGIAMGLVK GDD+ IL+DI G ED L Sbjct: 430 SEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDDYTILTDIQGMEDAL 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT +G+TA+QMD+KI G+S +I+ AL QAK+GR+ IL+ M + E + +L Sbjct: 490 GDMDFKVAGTANGVTALQMDIKIDGLSRDILEEALSQAKKGRMQILDSMLATIKEPKEEL 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EF P++ MAI PD+IR+VIG GK I I+++TG K++I+ DG++ I+S+ + A Sbjct: 550 SEFAPKILTMAIEPDKIRDVIGPSGKQINQIIDETGVKIDIEQDGSIFISSTDNEMNKKA 609 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +++I + EV +IY G+V ++ FGAFV +DGLVHIS+L+ ER K DVV Sbjct: 610 KQIIEDLVREVEVGQIYLGKVKRIEKFGAFVELFKGKDGLVHISELAEERTNKVEDVVSI 669 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 D + VK+ + D +G++ LS K V Q+ K Sbjct: 670 DDQIMVKVKEIDRQGRVNLSRKAVIQDEKK 699 >gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM 245] gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM 245] Length = 736 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 332/718 (46%), Positives = 469/718 (65%), Gaps = 37/718 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71 G+ + +ETG++A+Q+DG+V+ G+T+VLATVV + + QD+FPL V Y+E+ A G Sbjct: 15 GKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 74 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RESRP+E EIL +R+IDR++RPLF Y ETQ+I+ V+ D + V+ Sbjct: 75 KFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVLGG 134 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF + +V ING++++NP ++E S LD+ + GT D + M+E Sbjct: 135 LAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICIGGTTDTICMLEG 194 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMS 245 E ++SE +LDAI FGH+ + + +++A AK P VI S+ L + + Sbjct: 195 EMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAVIPSE----LTDLVR 250 Query: 246 QMIKEDLRVSCFIP-EKYVRCKQIDDLKKKM----VSYFSSEHS------------SWNE 288 + + LR + P K R +Q + +++ V +F + S NE Sbjct: 251 GLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQADPSKALCLNE 310 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I ++ KV+R ++LD R+DGR E VR IS ++G++ R HGS+LF RG+TQA Sbjct: 311 HIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQA 370 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +V +TLGT++D Q VD+L+ FM+HYNF P + GE R+G+ RREIGHG LA RA Sbjct: 371 LVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRREIGHGNLAERA 430 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I V P +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K Sbjct: 431 IKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIK 490 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G ++ +LSDI G+EDHLG MDFKV+GT GITA QMD+KI G+ +I+ AL+QA+RGR Sbjct: 491 EGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILESALEQARRGR 550 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL++M + + +R++L +F PR+ + +P D I +IG GG+ IR I E+TGA++NI+ Sbjct: 551 LHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSITEETGAEINIE 610 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647 DDGTV IA SS+ AA I+++ PEV IY G+V V D GAFV F DGLV Sbjct: 611 DDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFVEFLPKTDGLV 670 Query: 648 HISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVV--DQNTGKP 697 HIS++S TERVAK SD +K GD + VKL+D D R GK + LSM+ V D G P Sbjct: 671 HISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVETDAANGAP 728 >gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 758 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 317/699 (45%), Positives = 450/699 (64%), Gaps = 8/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ I+W GR L LETG+IARQ+DG+V+ L+ + ++ DF PL Sbjct: 1 MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVKLWRYFYLSHCCTKKK-EESVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178 D +SP V +++ AAL +SG+PF + G V N Y+LNP + E + S LDLF+ Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ VL+AI FGH +PVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + ++D + K R + ++ ++ +++ + + +E I + Sbjct: 240 DITQELEKY-RKDFEEAYSKTVKQERVQALEVVRNNILNTL--KEAGKDEKLITYAVKSF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+D R + +R I + +L +THGS+LF RG TQA+VV LGT + Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI PVAGIAMGL+KD ++ IILSD Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED+LG MDFKVAGT GITA+QMDMKI GIS I+ +L+QAK GRLHIL +M+ V Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE R + + PRV I D+I IG GK IR + E++ AK+ I DDG V + + Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596 Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S E EAA+ MI SIT++ E I +VVK+ + R G +HIS+++ + V Sbjct: 597 SSTEAEAAKNMMIDSITEL-EQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHV 655 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 D++K+GDT ++DF+ G KLS + VDQ TG+ Sbjct: 656 ESIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694 >gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 677 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/681 (45%), Positives = 444/681 (65%), Gaps = 8/681 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + IEW GR L LETG+IARQ+ G+V+ YG+T VL TVV + ++ DF PL Sbjct: 1 MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKK-EENVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178 D + P V +++ A AAL +SG+PF + G V N Y+LNP + E + S LDLF+ Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ V +AI FGH KPVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + K D + K R + ++ +++ +++ + + +E I ++ Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+DGR + +R I +V +L +THGS+LF RG+TQA+VV LGT + Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF A GE S AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+KD D+++ILSD Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED+LG MDFKVAGT G+TA+QMDMKI GIS I+ +L+QAK GRLHIL +M+ V Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +SE + + PR+ I D+I IG GK IR + E++ AK+ I DDG V + ++ Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596 Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S E E A+ MI SIT++ E I +VV++ + F R G +HIS+++ E + Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655 Query: 658 AKTSDVVKEGDTVWVKLLDFD 678 V+K+ DT ++DF+ Sbjct: 656 DSIESVLKQDDTFKALVIDFE 676 >gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. FW1012B] gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. FW1012B] Length = 762 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/698 (44%), Positives = 453/698 (64%), Gaps = 13/698 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 FD +E G + LETGR+A Q+DGAV G TVVL T ++L + + FFPL V Sbjct: 5 FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTAC-TQALAEEKGFFPLVV 63 Query: 62 NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +YQE +YA G+IPG Y RRE RP+E E+L+ R+IDR RPLF K +++E Q+I V+ Sbjct: 64 DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS-LDLFV 178 D + P V+++ AAS AL +S +PF GP+ G +V YI+GQ+VLNP + + G+ L+L Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++DAV+MVE +SED++ DA+ +GH +P+++ ++ + K I + Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243 Query: 239 K-LEEEMSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIV 292 + LE + Q +KE + +P + R + +V F + + GE Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGE-- 301 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 V E ++ K++R ++ + +R+DGRD+++VR I QVG+L RTHGS+LF RG+T+A+ V Sbjct: 302 -VLEAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVA 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ +++L+G FM+HYNF P GEV + PSRR+IGHG LA R++ PV Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDD Sbjct: 421 LPGPEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDD 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F+IL+DI GDED +G MDFKVAGT GIT +QMD+KI GI + +M AL QAK RLHIL Sbjct: 481 FLILTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHIL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M++VL+ R +L P++ ++ I P++IR VIG GGK I+ I +TGA ++I+D G Sbjct: 541 GRMAEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGK 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + I + +L +E AR + +V YKG+V K++D G V +GLVH+SQL Sbjct: 601 ISIFAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQL 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV DVVK G + VK+L+ + G+I+LS K V Sbjct: 661 DIERVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAV 698 >gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 754 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/693 (45%), Positives = 449/693 (64%), Gaps = 8/693 (1%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 FDV ++ + G + +E+G+ ARQ+ GAV G TV+L T + ++ + FFPLT Sbjct: 5 FDVTSLTTQVGGIDITIESGKYARQASGAVTIKSGGTVILVTST-TQPIEVDRGFFPLTC 63 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 NYQE YA G++PG Y RRE RP+E E LISR+IDR IRPLF+K + +E Q+I V+ D Sbjct: 64 NYQEMAYAAGRVPGNYFRREGRPSERETLISRLIDRPIRPLFAKGFADEVQIIATVLSAD 123 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVS 179 +P V+++ ASAA +S +PF GP+VGA+V Y++ Q+VL P E+ SL+L + Sbjct: 124 KHVNPDVLALTGASAATHISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEELSSLNLIFA 183 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDF 237 T++A++MVE AN +SED+V DA+ +GH + KP+ + +L + K I +D Sbjct: 184 ATREAMVMVEGGANFVSEDLVADALAWGHEQVKPLFDIQDELRSLVGVPKMEITAPIQD- 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVF 295 ++L + + I +DLR + PEK VR D K+K + + + + + Sbjct: 243 AELVSFLGEFISDDLRAAVTTPEKMVRYAAKDAAKQKAKQAVAEKFPEDAAKLKAVSDIV 302 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 D+ K+VR ++ + +R+DGRD+ TVR +S + G+L THGS LF RG+T A+ V TLG Sbjct: 303 GDLTKKIVRERIVKEGLRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLG 362 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + DEQ DSL G FM+HYNF P GE + SRRE+GHG LA RAI PVLP Sbjct: 363 STRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERAIAPVLPN 422 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FP+T+R+VSEI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+ + F + Sbjct: 423 QDEFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISAPVAGIAMGLCKENEQFFV 482 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDED LG MDFKVAGT GIT++QMD+KI GI +++ AL QAK R+HIL+ M Sbjct: 483 LTDILGDEDALGDMDFKVAGTRDGITSIQMDIKISGIPSDVLRKALYQAKDARVHILDHM 542 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++VL+E R +L + P++ I+ I P++IR+VIG GGK I+ I +T A ++I+D G + I Sbjct: 543 AEVLAEPRAELSDLAPQMAIVHIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISI 602 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + +LA +E A+ M+ PE K Y G V KV++ GA V ++G++H+SQL E Sbjct: 603 FAPTLASMEKAKAMVLYYDQKPEPGKDYLGTVRKVLEVGALVEILPGQEGMLHVSQLDIE 662 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV + DVV+ G VWV + + G+I+LS K Sbjct: 663 RVERVEDVVQLGQEVWVTCIALEPGGRIRLSRK 695 >gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM 15470] gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM 15470] Length = 694 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 299/689 (43%), Positives = 453/689 (65%), Gaps = 9/689 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +ETG++A+Q+ GAVL YGETVVL T + ++G DFFPLTV+Y+E+ Y Sbjct: 7 MELAGRSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGK+PGG+LRRE RP + IL +R+IDR IRPLF K +N+ V+ V+ D +++P + Sbjct: 67 AVGKMPGGFLRREGRPGNSAILNARLIDRPIRPLFDKRCRNDIHVMATVLSVDYDNAPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187 M+ ASA+L +S +P++GP+ G +V ++G++V+NP ++ + +L++ V+G++ A+LM Sbjct: 127 CGMLGASASLGISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKVSTLNITVAGSETAILM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE A + E+ VLDAI+FGH K ++ K+ + K + F ++ EE+ Sbjct: 187 VEGGAQEAPEEDVLDAIMFGHETIKELVAFQKKIIEEVGKPKRTLI---FPEIPEEIKTA 243 Query: 248 I----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 I + L+ + F P+K R +++++K+ ++F E N +I + ++V Sbjct: 244 IYAYAERPLKEAIFNPDKLTREAHMEEVRKEAEAHFK-EIYPENGSDIAECLNHLTKEIV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ K+R DGR + +R IS +VGLL R HGS+LF RG TQA+ + TL + Q + Sbjct: 303 RHMISVDKIRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQII 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ ++ YNF + GE P RREIGHG LA RA+ PV+P +FPY + Sbjct: 363 DDLTQETEKRYIHQYNFPSYSVGETKSSRGPGRREIGHGALAERALIPVIPTVEEFPYAI 422 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEI ES+GSSS A+VCGS+++LM+AGVPI PVAGIAMGLV +G+ F +L+DI G E Sbjct: 423 RVVSEILESNGSSSQASVCGSTMSLMNAGVPIKAPVAGIAMGLVNEGEHFTVLTDIQGME 482 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G+S I++ ALQQA++GR+ IL +M++ + + Sbjct: 483 DALGDMDFKVAGTAKGITAIQMDIKIHGLSREILLAALQQAQKGRMFILGKMAECIDKPA 542 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L + P++ + IP D+IR+VIG GGK+I I+ +TG K+++++DG V IA+ Sbjct: 543 EHLSPYAPKIITLTIPVDRIRDVIGSGGKIINKIISETGVKMDVEEDGHVYIATPDEEAA 602 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A++ + +T +V + Y G+V ++M FG FV ++G+VH+SQL+T RV K DV Sbjct: 603 QRAKKWVEELTHEVQVGETYLGKVTRLMKFGVFVEILPGKEGMVHVSQLATRRVEKPEDV 662 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V EGD + VK+ + DD+G+I LS K + Q Sbjct: 663 VHEGDEIMVKVTEIDDKGRINLSRKALLQ 691 >gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris aestuarii DSM 271] gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris aestuarii DSM 271] Length = 734 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 314/702 (44%), Positives = 460/702 (65%), Gaps = 24/702 (3%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAV 70 +G+ L +ETG++A+Q+DG+ + +T+VLATVV ++ Q FFPL V Y+E+ A Sbjct: 13 SGKTLSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFPLQVEYREKYSAA 72 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+E EIL +R+IDR++RPLF Y +TQ+II+V+ D + V+ Sbjct: 73 GKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQDTQIIISVISSDQINDADVLG 132 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 VAASAA+M+S +PF+ + +V +NG+Y++NP ++E + S +D+ + GT++ + M+E Sbjct: 133 GVAASAAIMVSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDIDISIGGTENTICMLE 192 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMI 248 E +++SE +L+AI FGH K + +++A K + K L + ++++ Sbjct: 193 GEMDEISEAEMLEAIRFGHEAIKKICALQNEIAAEVGKTARTFSAAKAPDNLRQSIAEIC 252 Query: 249 KEDLRVSCFIP----EKYVRCKQI-DDLKKKMVSYFSSEHSS------------WNEGEI 291 +L+ ++P E+ + +I + K + + + E + NE I Sbjct: 253 SNELKELAYMPLCKEERAEKTAEIYKNAKAQTLQRYQQEITPEVIAAEPEKALYLNEQII 312 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 I+ +V+R ++LD R+DGR + VR IS ++GL+ R HGS+LF RG+TQA+V Sbjct: 313 GDAIHSIEKQVMREMILDDAKRLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVT 372 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +TLGT++D Q +D+L+ FM+HYNF P + GE R+G SRREIGHG LA RAI Sbjct: 373 LTLGTKKDAQMIDTLTDDADKRFMLHYNFPPFSVGETGRVGGTSRREIGHGNLAERAIRK 432 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V P + FPYT+RIVS+I ES+GSSSMA+VCG +LA MD GVP+ KPV+GIAMGL+K+GD Sbjct: 433 VAPAESAFPYTIRIVSDILESNGSSSMASVCGGALAAMDGGVPLRKPVSGIAMGLIKEGD 492 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +LSDI G+EDHLG MDFKVAGT GITA QMD+KI G+ +I+ AL+QA GRLHI Sbjct: 493 RYAVLSDILGNEDHLGDMDFKVAGTADGITACQMDIKIDGLDYHILEQALEQALHGRLHI 552 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M++ + E R ++G++ P++ + IP D I VIG GG+ IR I E+TGA++NI+DDG Sbjct: 553 LDKMNEAIQEPRTEIGKYAPKLTTIQIPVDAIGMVIGKGGETIRSITEETGAEINIEDDG 612 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHIS 650 TV IAS+S AA E I+ + PEV +Y G+V + D GAFV F DGLVHIS Sbjct: 613 TVTIASASGEGASAALETIKLLISKPEVGTVYSGKVRDIREDLGAFVEFLPKTDGLVHIS 672 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689 ++S ERVAK SD +K GD V VKL+D D R GK + ++ + Sbjct: 673 EISNERVAKVSDHLKPGDKVKVKLVDVRKDPRTGKTRFALSI 714 >gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0860] gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0860] Length = 694 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 299/686 (43%), Positives = 447/686 (65%), Gaps = 9/686 (1%) Query: 13 GRPLKLETGR-IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GRP R I+++++GAVL YG+TVVL+ V + KD DFFPLTVNY+E+ YAVG Sbjct: 2 GRPPTRSRNRPISQKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLTVNYEEKMYAVG 60 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+E L +R+IDR IRP+FS+ ++NE Q+ VM + + +P + +M Sbjct: 61 KIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEMAAM 120 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +S AL +S +PF+GP+ G V ING+YVLNP +++ +Q ++L V+GT++A+ MVE Sbjct: 121 FGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAGTKEAINMVES 180 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMIK 249 A ++SE+ +L A++FG + K ++ ++ K + +D + L++E+ Sbjct: 181 GAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDADLKKEIFDAYY 240 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVR 304 ++ + EK R +ID +K + ++ + + E E+ + ED++ VVR Sbjct: 241 NTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQIAEDLEKDVVR 300 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ K+R DGR + +R +S++V +L R HGS LF RG TQA+ V TL + Q +D Sbjct: 301 ELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIID 360 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L F+ HYNF + G R G+P RREIGHG L RA+ ++P FPYT+R Sbjct: 361 GLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIPSEEDFPYTIR 420 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV DG+++ IL+DI G ED Sbjct: 421 LVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILTDIQGLED 480 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ R+ IL E++ ++ R Sbjct: 481 HLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEELTTTIAAPRE 540 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L ++ P++EI+ I P +I++VIG GG+ I I+++TG K++ID DG V IASS I+ Sbjct: 541 ELSQYAPKIEIIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVSIASSDAEMIK 600 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A ++I +T EV ++Y +VV++ FGAFV+ +DGL+HISQL+ ERV DVV Sbjct: 601 KAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLANERVNNVEDVV 660 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VK+ + D +G++ +S K + Sbjct: 661 KLGDEVLVKVTEIDKQGRVNVSRKAL 686 >gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] Length = 700 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 307/688 (44%), Positives = 439/688 (63%), Gaps = 10/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +EWAGR L E G+ A+Q++GAV+ YG+T VL+T + KD FFPLTVNY+ER Y Sbjct: 10 MEWAGRTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKD-LPFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP++N +L SR+IDR IRPLF Y+N+ QVI VM D +S + Sbjct: 69 AAGKIPGGFIKREGRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S AL +S +PF GP+ G V +NG++++NP + S +DL V+GT+DAV M Sbjct: 129 AAMIGSSMALSISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDIDLIVAGTKDAVNM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEE 243 VE A Q+ E+ ++DAI+FGH+E K ++ E I+++ K + ++ D LE E Sbjct: 189 VEAGAEQVPEEDMMDAILFGHDEIKRLVAFQEEIIAEVGKPKMEVQLLTTDAD---LETE 245 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + L + + EK R I D+ + M+ Y + + E+ + + + Sbjct: 246 LREKAYGKLTEAAKVVEKAAREDAISDVYDEIMLDYVTEQPEEDRSKEVKEILNKLLKET 305 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++ + +R DGR + +R +S++V +L R HGS LF RG TQA+ V TLG D Q Sbjct: 306 VRELITKENIRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGDVQI 365 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + FM HYNF + GE + P RREIGHG L RA+ V+P FPYT Sbjct: 366 LDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEQVIPSEKDFPYT 425 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GS+S A++C S++A+M AGVPI+ PVAGIAMGLVK G+D +L+DI G Sbjct: 426 IRLVSEVLESNGSTSQASICASTMAMMAAGVPITSPVAGIAMGLVKHGEDMTVLTDIQGM 485 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKVAGT G+TA+QMD+KI GI+ ++ AL+QA+ GRL IL+ M + E Sbjct: 486 EDALGDMDFKVAGTKDGVTALQMDIKIEGINREVLKSALEQARDGRLKILDNMLSAIPEP 545 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L E+ P+++ M I PD+IR+VIG GK+I I+E+TG K++I+ DGTV I+ + Sbjct: 546 RDELSEYAPKIKTMNIHPDKIRDVIGPSGKIINKIIEETGVKIDIEQDGTVFISGLDVDM 605 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I A I I EV + Y G+V ++ FG FV +DGLVHISQL+ ERV K D Sbjct: 606 IHKALSTIEEIVREVEVGETYLGKVKRIEKFGCFVEIFKGKDGLVHISQLANERVGKVED 665 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 VV GD + VK+ + D++G++ LS K V Sbjct: 666 VVSIGDELLVKVTEIDNQGRVNLSRKAV 693 >gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium retbaense DSM 5692] gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium retbaense DSM 5692] Length = 742 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 311/698 (44%), Positives = 454/698 (65%), Gaps = 12/698 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F +V G+ + +ETGR+A Q++GAV G TVVL T V +D DF PL Sbjct: 6 IFGSTSVSTTLQGQDILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRD-IDFMPLV 64 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+YQE +YA G+IPG Y RRE RP+E E L+SR+IDR IRPLF +++E Q+I V+ Sbjct: 65 VDYQEMSYASGRIPGNYFRREIGRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLS 124 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 E +P V+++ ASAA+ +S +PF+GP+ G +V ++G++VLNP +E + S L+L + Sbjct: 125 AAPEVNPDVLALTGASAAMHISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENSDLNLVL 184 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 +G++DAV MVE N + ED + +AI +GH + + +++ +L + I + + + Sbjct: 185 AGSRDAVTMVEGGGNFVPEDRMAEAITWGHEQVQALLQLQDELREKIGAPKIAVQAPEAD 244 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIV 292 ++LE + + +L + +P K R +K K+++ E + E G+I Sbjct: 245 TELESRVHDLAGSELAEALQVPNKLERKTAKKTVKDKVMATLEQEFAEEPERLKGAGKI- 303 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 FE ++ +VR + + K R+DGRD TVRD++ + L RTHGS++F RG+T+ + V Sbjct: 304 --FEALEKDIVRKRVKETKTRIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVA 361 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ ++ L G FM+HYNF P GEV M P+RREIGHG LA RA+ PV Sbjct: 362 TLGSSRDEQRIEMLDGELNKRFMLHYNFPPYCVGEVKMMRGPARREIGHGALAERALTPV 421 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FP+T+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+S PVAGIAMGL+K+ D+ Sbjct: 422 LPTEDEFPFTMRVVSEVMESNGSSSMATVCGTSLSLMDAGVPVSAPVAGIAMGLIKEEDE 481 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++L+DI GDEDHLG MDFKVAGT GITA+QMD KI GI ++ AL QA RLHIL Sbjct: 482 FLVLTDILGDEDHLGDMDFKVAGTAEGITAIQMDSKIAGIPPEVLKRALNQAMDARLHIL 541 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + M+ VL +R +L E P++EI+ + ++I++VIG GGK I+ I + TGA ++I+D G Sbjct: 542 DNMNTVLPAARAELSEHAPQLEIVEVDTERIKDVIGPGGKNIKAITQATGASIDIEDSGR 601 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + I + + ++ A +M+ EV K Y+G V ++M+FGAFV +GL+HISQL Sbjct: 602 ISIFAPNQQALQEAVDMVLFYDQKAEVGKDYEGTVKRIMNFGAFVEILPGLEGLLHISQL 661 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +RV + DVVK GD+V VK+++ GKI+LS K V Sbjct: 662 DQQRVEQVEDVVKVGDSVKVKVIEQSGDGKIRLSRKAV 699 >gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_27] gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_27] Length = 699 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 310/708 (43%), Positives = 453/708 (63%), Gaps = 27/708 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGSDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I +F K Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENI-----EFEK 235 Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290 E+ ++K E L+ + K R +D L+++++ F E + E E Sbjct: 236 --PEVLTLVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEE 293 Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF Sbjct: 294 LPEDIILEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ++ + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG Sbjct: 354 RGETQSLAITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI Sbjct: 414 SLAERALSYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA R+ IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI++QTG Sbjct: 534 QAHEARIQILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTG 592 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + V+I DDG V + + +E ++I E ++Y+G+VV +M FGAF+ Sbjct: 593 STVDITDDGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPG 652 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++GL+HIS++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 653 KEGLLHISEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 4_1_13] gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_36A2] gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 4_1_13] gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_36A2] Length = 699 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 306/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +E+E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I + + + Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 ++ + E L+ + K R +D L+++++ F E + E E+ Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA R+ Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI++QTG+ V+I D Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I E ++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 703 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 311/700 (44%), Positives = 455/700 (65%), Gaps = 19/700 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V ++E AGRPL +E G++A+Q++GA L YG+TVVL T + ++G DFFPLTV+Y Sbjct: 3 VKKYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RE R T L +R+IDR IRPLF K ++NE V+ ++ + + Sbjct: 63 EEKQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKD 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P V ++ AS AL +S +PF GPV V ++G+ ++NP +++ Q S L L V+GT+ Sbjct: 123 NAPDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGTK 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI---EAISK---LAKMCAKEPIVIDSKD 236 +A++MVE AN++ E+ + DAI F H E K ++ E I + L+KM + PI +D + Sbjct: 183 EAIMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPI-LDEEI 241 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + E + + +E ++ P+K R Q+D +K ++ +F+ E E I V + Sbjct: 242 KKAVVEFATPLFEEAVKN----PDKKTREDQMDSSQKSVLQHFT-ESYPEEEKLIADVSD 296 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + VVR + L++ R+DGR + +R +S +VG L R HGS LF RG TQ + V TLG Sbjct: 297 ETMKAVVRKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGA 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +EQ +D L ++ ++ HYNF P +TGE M P RREIGHG LA RA+ V+P Sbjct: 357 ISEEQRLDGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LM AGVPI PV+GIAMGLVK+G+ F I+ Sbjct: 417 EEFPYTIRVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIM 476 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G ED LG MDFK+AGT+ G+TA+QMD+KI G++ I+ AL+QA+ GR+ IL +M Sbjct: 477 SDIQGIEDALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKML 536 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + + +L + P++ M I PD+IR VIG GGK I IV++TG K++I+DDG++ I Sbjct: 537 EAIDKPNEELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIM 596 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHIS 650 ++ + AR + SI EV K Y G V ++MDFGAFV ++GLVHIS Sbjct: 597 ATDEEAAKKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHIS 656 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 QL+ ERV K DVV GD + VK+ + D +G++ LS K V Sbjct: 657 QLAEERVNKVRDVVDIGDQILVKVTEIDRQGRVNLSRKAV 696 >gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium thermophilum IAM 14863] gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM 14863] Length = 762 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 312/707 (44%), Positives = 448/707 (63%), Gaps = 21/707 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E GR + LETGR+A+Q+ G+VL YG++VVL T V + ++G DFFPLTV+Y+ER Y Sbjct: 23 MELGGRTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEERMY 82 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VG+IPG + RRE RPT IL +R+ DR IRPLF + ++N+ QV+ V+ D + + Sbjct: 83 SVGRIPGNWFRREGRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHPVEI 142 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 + M+ ASAAL +S +PFEGP+ G V ++GQ+V+NP ++ + S + L V+GT+ AVLM Sbjct: 143 MGMIGASAALTISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSEMHLVVAGTEHAVLM 202 Query: 188 VELEANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 VE A ++ E +LDAI+FGH N P I+ + +E ++ + +LE+ Sbjct: 203 VEAGAKEVPEQTMLDAILFGHEVIKNTIIPTIKQMQAEVGKPKREVVLFNPP--PELEQA 260 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + LR + P+K R + + + + + + + E +E I + + + + V Sbjct: 261 VREAATVRLREAVRNPDKLAREEAVAAVGEAVQAELA-EQFPESEKHIAYLLKKVLKEEV 319 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++++ +R DGR +R I V LL R HGS LF RG TQ + + TLGT D Q + Sbjct: 320 RRAIIEEGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKL 379 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM HYNF P + GE + P RREIGHG LA RA+ PV+P +FPYT+ Sbjct: 380 DDLTLEETKRFMHHYNFPPYSVGETRPLRGPGRREIGHGALAERALEPVIPPEEEFPYTI 439 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISG 481 R+VSE+ ES+GSSSMA+VCGS+LALM AGVPI PVAG+AMGLV+D + + +L+DI G Sbjct: 440 RVVSEVLESNGSSSMASVCGSTLALMAAGVPIKAPVAGVAMGLVEDPETGRYAVLTDIQG 499 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT G+TA+QMDMKI G S I+ AL QA+ GR+ I+ +M +SE Sbjct: 500 IEDALGDMDFKVAGTKKGVTALQMDMKISGTSREILEKALMQAREGRMFIMEKMLACISE 559 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-----TGAKVNIDDDGTVKIA 596 R +L + PR+ M I P++IR+VIG GG I I+E+ T +++I DDGT+ IA Sbjct: 560 PRKELSPWAPRIITMKISPEKIRDVIGKGGSTINKIIEETKVGHTKVEIDIQDDGTIYIA 619 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + +L E AR+MI ++ PE IY G+V ++M FGAFV ++GLVHIS+LS +R Sbjct: 620 AVNLEAGERARQMIEALVKDPEPGMIYTGRVTRLMQFGAFVEILPGKEGLVHISELSDKR 679 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK------VVDQNTGKP 697 VA+ DVV GD V VK+ + D G+I LS+K Q +G+P Sbjct: 680 VARVEDVVNIGDEVTVKVTEIDRLGRINLSIKDAMPKQAASQPSGRP 726 >gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] Length = 716 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 299/685 (43%), Positives = 443/685 (64%), Gaps = 3/685 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E+AGR L +E G++A+Q+ GA L YG+T V T + ++ DFFPLTV+Y+E+ Sbjct: 7 QMEFAGRTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKM 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P E+ L +R+IDR IRPLF K Y++E V+ D +++P Sbjct: 67 YSVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPE 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ AS +L +S +PF GP+ G +V ++GQ+V+NP + + + S +D V+GT+DA+L Sbjct: 127 IAAMIGASVSLCMSHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSDMDFVVAGTKDAIL 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 MVE A Q+ E +LDAI+ H E K + S L + + ++++ + + E + Sbjct: 187 MVEGGAEQVPEADILDAIMVAHEEIKKAVAFQESFLDAVSVPKQEFVEAEPPADMVEAVH 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + ++ + F +K R ++++ ++ + +FS + + + ++ + + ++VR Sbjct: 247 AYGEAAMKEAVFTADKMAREEKMNAVETDIYEHFSDIYPE-DAAVVAAITQKMIKEIVRH 305 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ K+R DGR + VR +S +VGL RTHG+ LF RG TQ + TL + Q++D Sbjct: 306 MIAVDKIRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSEAQHIDG 365 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + +M HYNF + GE P RREIGHG+LA RA+ VLP +FPY +R+ Sbjct: 366 VGLETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVLPSEEEFPYAIRV 425 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSM +VCGS+LALMDAGVP+ PVAG+AMGLV G+DF IL+DI G ED Sbjct: 426 VSEVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGEDFTILTDIQGMEDA 485 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+ I+ ALQQA GRLHI+ +M +S R Sbjct: 486 LGDMDFKVAGTTKGVTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLTAISAPRKT 545 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L F PR+ M I PD+IR+VIG GGK+I+ I E+TGAK++IDD G V IAS A + Sbjct: 546 LSPFAPRIITMQIHPDKIRDVIGPGGKIIKQITEETGAKIDIDDTGLVYIASVDAAGGDQ 605 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+ I +T EV + Y+G+V ++M+FGAFV ++GLVHISQL+ ERV K DVV Sbjct: 606 AKAWIERLTKDVEVGETYEGKVTRLMNFGAFVEVLPGKEGLVHISQLANERVEKVEDVVH 665 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK ++ D +G+I LS KV+ Sbjct: 666 VGDEIMVKCIEIDSQGRINLSRKVL 690 >gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 696 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 290/682 (42%), Positives = 464/682 (68%), Gaps = 3/682 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E+AG +ETG++A+Q++G+V+ G++ VL T D + G ++FPL VNY+ER Y Sbjct: 6 LEYAGSDFHIETGKLAKQANGSVMVRSGDSQVLVTATMDEP-RPGMNYFPLMVNYEERVY 64 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A+GKIPGG LRRE RP + L +R+IDRSIRPLF Y+ + QV+ ++ D + P + Sbjct: 65 AIGKIPGGVLRREGRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEM 124 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +++ AS AL +S +PF+GP+ G +V ++G+ ++NP +E + S LDL V+G++DA++M Sbjct: 125 LALNGASIALTISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDLVVAGSKDAIMM 184 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQ 246 VE AN++ E V+L+A+ H E + +I+ + + KE + I+ +L E++ + Sbjct: 185 VEASANEVEEAVILEAMDLAHQEIQKMIKIQKTIREEAGKEKEVFIEPTVDDELAEKVEE 244 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 ++ + L+ + I +K R ++I LK ++ + + + ++ FE++ K V+++ Sbjct: 245 LLGDRLKEAIQIQKKQARGEKIASLKAELKENLNPDEDEDIDSQLNLAFENMIKKSVKSL 304 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++D +R DGR+ + +R I A+VG++ R+HGS +F RG+TQA+ V+TLG DEQ + L Sbjct: 305 IIDDGIRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGL 364 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + +M HYNF GE S M +P RREIGHG L +A+ PV+P+ FPYT+RIV Sbjct: 365 GEKETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPEKDDFPYTIRIV 424 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GSSS A++CGS+L+LMDAGVPI PV+GIAMGL+K D+ ++LSDI G ED Sbjct: 425 SEVLESNGSSSQASICGSTLSLMDAGVPIKAPVSGIAMGLMKKDDEIVVLSDIQGFEDFH 484 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT++G+TA+QMDMK+ G+S++++ AL +AK+GR+HI+ +M +V++E R +L Sbjct: 485 GDMDFKVAGTENGVTALQMDMKLKGLSKDVLEEALNKAKKGRMHIMEKMLEVIAEPRPEL 544 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + P + M I P++IR VIG GGK I I+++TGA+++IDDDGTV I + + A Sbjct: 545 SKNAPALISMKINPEKIRFVIGPGGKTINEIIDKTGAQIDIDDDGTVMILTDDQESGKEA 604 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 ++M+ ++T EV +IY+G V ++M+FGAFV ++GLVHIS+++ + + SDV+ Sbjct: 605 KKMVENLTKEVEVGEIYQGTVKRIMNFGAFVEILPNKEGLVHISKIADRHIKEVSDVLSV 664 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D++ +I LS+K Sbjct: 665 GDEIPVKVIEIDNQDRINLSLK 686 >gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] Length = 710 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 307/691 (44%), Positives = 455/691 (65%), Gaps = 10/691 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ G+ L +E G +A+Q++G+VL Y +TV+L+TVV + KD DFFPLTV Y+E+ Y Sbjct: 8 MDFYGKNLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKD-VDFFPLTVTYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+L+RE RP+E+ L +RMIDR IRPLF+ ++NE Q + V+ D ++SP + Sbjct: 67 SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDASPEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187 +M+ AS AL +S +PF GP+ G V ++G++++N ++ + SL +L V+GT+DA+ M Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLINLEVAGTKDAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE +A ++SE+V+L+A++FGH + K +I K+ + C KE + I + S L +E++ Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKLEIPLFELDSNLVDEVTS 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300 K+ + + IP K R ID L +++ + + ++ ++ ++ + D++ Sbjct: 247 RAKDQMVAAVSIPGKLERYGAIDALIEEVTNEYDNKEYENDDIKANVMKQVGIILHDLEK 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ +K+R DGR + +R + +Q+ LL R HGS+LF RG+TQ + V TLG + Sbjct: 307 DEVRRLITVEKIRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + FM HYNF P + GEV RMGAP RREIGHG L RA+ V+P FP Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGEVGRMGAPGRREIGHGALGERALAQVIPGEDVFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSS A++C SS+ALM AGVPI PVAG+AMGLVK GDD+ IL+DI Sbjct: 427 YTIRVVSEVLESNGSSSQASICASSMALMAAGVPIKAPVAGVAMGLVKKGDDYTILTDIQ 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGTD GI A+QMD+KI GI++ I+ AL QAK R I+ M V++ Sbjct: 487 GMEDHLGDMDFKVAGTDEGICALQMDIKIDGITKEILQEALAQAKVARREIMANMMAVIN 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599 E R +L + P+V+++ I DQI++VIG GGK I I+EQ+ G K++I+ DGTV + Sbjct: 547 EPRKELSPYAPKVQMIKIGTDQIKSVIGQGGKTINEIIEQSDGVKIDIEQDGTVIVYHHD 606 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I A +I I +V ++Y G+VV+V D AFV+ D +HIS + ER+ K Sbjct: 607 QEAINKAIALIEKIVKKAKVGEVYDGKVVRVEDNYAFVNLFEGTDAFLHISDYNHERIKK 666 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDVVK GD + VK+ DD+GK+ +S K + Sbjct: 667 MSDVVKLGDILKVKVTKVDDKGKVNVSRKAL 697 >gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1] gi|187611283|sp|A5URV5|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1] Length = 747 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 314/700 (44%), Positives = 464/700 (66%), Gaps = 18/700 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H+V +E AGR L LE GR A Q++GAV+ YG+T++LAT V + + DFFPLTV+Y Sbjct: 6 IHSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDY 65 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPG + +RE +PT++ IL +R+ DR +RPLF + Y+NE Q+I+ D+ Sbjct: 66 EEKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQ 182 + P ++++ ASAAL +S +PF GPV QV YI+G+ +NP + D LDL V+GT+ Sbjct: 126 NDPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGTK 185 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 DAVLMVE A +L ED++L+AII GH CK + + ++L ++ + P +D+ Sbjct: 186 DAVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTS-- 243 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSV-- 294 LEE + Q + L + P K VR Q + LK++++++F+++ E I +V Sbjct: 244 --LEEAIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVST 301 Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 FE++ + VR ++L++ R+DGR + +R IS +VGL+ R HGS LF RG TQ + + T Sbjct: 302 AFENLLYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLAT 361 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ +EQ +D L ++ HYNF P +TGEV R+G+P RR+IGHG LA R++ VL Sbjct: 362 LGSPAEEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVL 421 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471 P +FPYT+R+VSE S+GSSSMA+VCGSSLALMDAGVPI PVAG+AMGL+ KDG Sbjct: 422 PSKEEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDG- 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G EDHLG MDFKVAGT G+T +Q+D+K GI+ IM A QA+ GRL+I Sbjct: 481 RWRVLTDIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M+ V+SE R +L + PR+ + I P++I +IG GGK +RGI E TGA+++I++DG Sbjct: 541 LDKMNAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I++ A + A M+ ++T +V I+ G+VV++M FGAFV+ +DG+VH+S+ Sbjct: 601 RVYISTPDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSE 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 L RV DV+K GD + V ++ + GK+ LS + + Sbjct: 661 LDVGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700 >gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 689 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 303/683 (44%), Positives = 453/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K +NE V+ VM D + P Sbjct: 64 YAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ +NG++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ E+ +L+ I+ H E K ++ + KE V +SKD +++ + + Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F+ + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFADIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ ++Q +D Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + ++ HYNF + GE P RREIGHG LA RA+ PV+P +FPY LR+ Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G+I LS K Sbjct: 663 VGDEIMVKVIEIDKQGRINLSRK 685 >gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 706 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 310/687 (45%), Positives = 451/687 (65%), Gaps = 21/687 (3%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ LETG A+Q++G++ A +GETVVL T V + + + DFFPLTVNY E+ Y+VGKIP Sbjct: 18 PIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVNYIEKFYSVGKIP 77 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+L+RES+P++ E LI+R+IDR +RP+F ++NE Q++ V+ D ++SP V+S+ AA Sbjct: 78 GGFLKRESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVATVVSSDQKNSPDVLSINAA 137 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193 SAALM+S +PF GPV +V +NG+Y++NP + DQ +++ ++GT+DA++MVE Sbjct: 138 SAALMISDIPFNGPVGAVRVGKLNGEYIINPDAELFDQLVMNIVLAGTEDAIVMVEAGLK 197 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253 +SE+ V++A GH + +I K+ + + KDFS + ++ + + + + Sbjct: 198 NVSEEEVVEAFEKGHQAIREIIAVQKKMREELGLPKA--EYKDFS-VPADILEKVYAECK 254 Query: 254 VSCF-------IPEKY-----VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 S F EKY V+ + + LK ++ F S ++E + +++ K Sbjct: 255 QSLFDAVMTKGKKEKYDAIERVKDEYFEKLKTELGEAFDQVESLYSEA-----YHEVEKK 309 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 + R + L+ K+R+DGR + +R I +VGLL R HGS+LF RG+TQA+V TLGT+ D Q Sbjct: 310 IFREITLENKIRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQ 369 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VD + G FM+HYNF P + GEV RMGAP RRE+GHG LA RA+ V+P + FPY Sbjct: 370 LVDDIEGNSSKRFMLHYNFPPFSVGEVGRMGAPGRREVGHGALAERALSFVIPDESDFPY 429 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMATVCG L+LMDAGVP+ VAGIAMGL+ + + ILSDI G Sbjct: 430 TIRVVSEILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAILSDIMG 489 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDHLG MDFKVAGT GITA+QMD+KI G+S +++ AL A+ GRLHIL++M +VL+ Sbjct: 490 IEDHLGDMDFKVAGTKDGITALQMDIKIEGLSMDLVREALAAARVGRLHILSKMQEVLAS 549 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R L + PR + + P+++ +IG GK I+ I+E+TG ++I D G V I +SS Sbjct: 550 PRPDLSPYAPRFVTINVDPEKVGLIIGPAGKNIKAIIEETGVSIDILDGGVVNIFASSKD 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I++A MI +I ++K+YKG+V K+MD+GAFV + L+H+SQ S E+V S Sbjct: 610 SIDSAISMIEAILGELTIDKVYKGKVKKLMDYGAFVEIAPGIEALLHVSQYSFEKVDDLS 669 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +K GD V VK L D+RG+ K+S K Sbjct: 670 KYLKIGDVVEVKYLGKDERGRHKISRK 696 >gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 699 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 305/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD +++E AGR LK+ TG+I+RQS GA++ YG+TV+L+T + + G DFFPLT Sbjct: 1 MFDEKIMKLELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ Y+ GK PGG+ +RE RP+ N L++R+IDR IRP+F + + ++ V+ + Sbjct: 61 VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P + ++ +S ALM+S +PF GPV V Y NG+++LNP E ++ LDL V+ Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238 GT++AV MVE A +L E+ +L AI+F H K + E + +K+ KE I + + + Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292 ++ + E L+ + K R +D L+++++ F E + E E+ Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300 Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 + + D+ K+VR +L K R+DGR + +R + AQ+ +L HGS+LF RG+TQ++ Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLGT+EDEQ +D L F +HYNF P + GEV RMG+P RRE+GHG LA RA+ Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+ Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA R+ Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M+ +S+ +L PR++ + IP D+I +IG GGK I+GI++QTG+ V+I D Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + + +E ++I E ++Y+G+VV +M FGAF+ ++GL+HI Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S++S ERV K DV+ GD V+++ + GKI LS K V Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699 >gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2] gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2] Length = 736 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 304/694 (43%), Positives = 448/694 (64%), Gaps = 13/694 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ GR L +ETG +A+Q+ GAVL Y +TVVL+T + K+G DFFPLTV ++E+ Y Sbjct: 19 LDFCGRGLTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLTVLFEEKLY 78 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+LRRE RP+E+ L +RMIDR IRPLF+ ++NE QV+ V+ D + +P + Sbjct: 79 SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCTPEM 138 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M AS AL +S +PF GP+ G V ++G+Y++NP ++ ++ ++L V+GT+ AV M Sbjct: 139 TAMFGASLALCVSDIPFNGPIAGVMVGRVDGEYIINPTPEQLEKSDINLTVAGTKYAVNM 198 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 VE A ++SE+ +L AI+FGH K ++ ++A KE + + + ++ E+ Sbjct: 199 VESGAKEVSEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVKLYTVDEDIDREVRA 258 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-------EIVSVFEDIQ 299 ++ +R + I +K R +ID+L ++ V+ F ++ NE ++ + I+ Sbjct: 259 QFEQAIRDAVSIEKKLERYGKIDELTEEAVAVFDAKEYE-NEAAKAKVLKQVKQICHSIE 317 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 A VR ++++ KVR DGR + +R + +QV +L R HGS+LF RG+TQ + V TLG D Sbjct: 318 ADEVRRLIIEDKVRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGPMND 377 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L+ + FM HYNF P + GE RMG+P RREIGHG L RA+ VLP F Sbjct: 378 NQIIDDLTEVETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSQVLPSVEDF 437 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILS 477 PYT+R V+E+TES+GSSS A++C +++LM AGVPI PVAGIAMGL+ D ++ + +L+ Sbjct: 438 PYTIRTVAEVTESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEENGKYTVLT 497 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+K+ GI+ + AL QAK R IL M Sbjct: 498 DIQGMEDHFGDMDFKVAGTSKGITALQMDIKVTGITREVFEEALAQAKVARAQILENMMA 557 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIA 596 +SE R +G + P++E I P++IR VIG GK+I I+E + K++I+DDG V I Sbjct: 558 AISEPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEASDDVKIDIEDDGHVVIY 617 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 A I A +MIR I +V IY+G+VV++ FGAFV+ DGL+HIS+++ ER Sbjct: 618 HMDRAAINHAADMIRDIVREAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKINHER 677 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K DV+ GDTV VK+ + DDRG++ +S K + Sbjct: 678 VNKVEDVLNIGDTVRVKVTEIDDRGRVNVSAKAL 711 >gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 728 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 324/714 (45%), Positives = 465/714 (65%), Gaps = 34/714 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71 G+ + +ETG++A+Q+DGAV+ G+T+V+ATVV + + QD+FPL V Y+E+ A G Sbjct: 12 GKIISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RESRP+E EIL +R+IDR++RPLF Y ETQ+I+ V+ D + V+ Sbjct: 72 KFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLYETQIIVTVISSDQINDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 +AAS A+M+S +PF+ P+ +V ING +V+NP ++E S LD+ + GT++ + M+E Sbjct: 132 LAASCAIMVSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDLDICIGGTENTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245 E ++SE +LDAI FGH + + S++A AK P VI ++ L E + Sbjct: 192 EMKEISEAEMLDAIKFGHAAIRKLCALQSEIAAEVAKPIRPFTPTVIPAE----LTETVR 247 Query: 246 QMIKEDLRVSCFIP-EKYVRCKQI----DDLKKKMVSYF----SSEHSSWNEGEIVSVFE 296 + + L+ + P +K R Q ++ + + +F SSE S + + + + Sbjct: 248 VLCETRLKELAYTPLKKEERADQTAAIYHEIIESTIEHFKATCSSEEFSTDPAKALCINP 307 Query: 297 DI--------QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + +V+R ++LD R+DGR + VR IS ++G++ R HGS+LF RG+TQA Sbjct: 308 HIIDEQIHMVEKRVMRHMILDDAKRLDGRALDQVRPISIELGIIPRAHGSALFTRGETQA 367 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +V +TLGT++D Q VD+L+ + F +HYNF P GE R+G+ RREIGHG LA R+ Sbjct: 368 LVTITLGTKKDAQSVDNLTSSADKKFYLHYNFPPFCVGETGRLGSIGRREIGHGNLAERS 427 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I V P +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K Sbjct: 428 IKMVAPTEEEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIKKPVSGIAMGLIK 487 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G + +LSDI G+EDHLG MDFKV+GT GITA QMD+KI G+ +I+ AL+QA+RGR Sbjct: 488 EGASYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQARRGR 547 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL EM K + +R +L F P++ + +P D I +IG GG+ IR I E+TGA++NID Sbjct: 548 LHILGEMEKAIPSTRQELANFAPKLTSIKVPVDCIGMIIGKGGETIRSITEETGAEINID 607 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647 DDGT+ IA S+ AA I+++T PEV IY G+V + D GAFV F DGLV Sbjct: 608 DDGTITIACSTSEGTNAALATIKNLTAKPEVGNIYIGKVRDIRDELGAFVEFLPKTDGLV 667 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQNTGK 696 HIS++S+ERV K SD +K G+ V VKL+D D R GK + LS+K +Q+ K Sbjct: 668 HISEISSERVTKVSDHLKIGEKVRVKLVDVRKDSRTGKTRFALSIKAAEQDAPK 721 >gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 689 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 302/683 (44%), Positives = 453/683 (66%), Gaps = 4/683 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +++ AGR L +ETG +A+Q+ GAV+ YG+T VL T + KD DFFPLTV+Y+E+ Sbjct: 5 QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K +NE V+ VM D + P Sbjct: 64 YAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 + M+ ASAAL +S +P+ GP+ G ++ +NG++V+NP + ++ L++ V+GT+DA+L Sbjct: 124 ICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A ++ E+ +L+ I+ H E K ++ + KE V +SKD +++ + + Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAVR 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + L + +K R Q ++++ ++++F+ + N ++ F+ + ++VR Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFAEIYPD-NLADVNKAFDAMTKEIVRH 302 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ +K+R DGR + VR IS + G+L RTHGS LF RG TQ + V T+ ++Q +D Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDG 362 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + ++ HYNF + GE P RREIGHG LA RA+ PV+P +FPY LR+ Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI PVAGIAMGLV G+ + IL+DI G ED Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT G+TA+QMD+KI G+S I+ AL+QA +GR+HI+ M ++E R Q Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ PR+ M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAAK 602 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I ++T EV ++Y G+V ++M FGAFV ++GLVHIS+L+ ERV DVV Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 GD + VK+++ D +G++ LS K Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685 >gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 738 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 300/697 (43%), Positives = 444/697 (63%), Gaps = 11/697 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +E+ GR L +ETG +A+Q+ G+ L Y +TVVL+T + K+G DFFPLTV+++ Sbjct: 7 QTFRLEFCGRVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSFE 66 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ Y+VGKIPGG+LRRE RP+E+ L +RMIDR IRPLF++ ++NE QV+ V+ D E Sbjct: 67 EKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQEC 126 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 +P + +M AS AL +S +PF GP+ G V ++G+YV+NP ++ ++ + L V+GT+ Sbjct: 127 TPEMTAMFGASLALCVSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSDIHLTVAGTKY 186 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 AV MVE A ++ ED +L AI+FGH K ++ ++A KE + + + +++ Sbjct: 187 AVNMVEAGAKEVDEDAMLGAIMFGHEHIKKLVAFQEEIAAAIGKEKMEVTLYTVDEAIDQ 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 E+ + + D+R + I +K R +ID+L + ++ F + + ++ + Sbjct: 247 EVRENFEADIRAAVSIEKKLERYGKIDELTEAALARFEEKEYASESAKAKALKQVKEICH 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I+A VR ++++ KVR DGR + +R + +QV +L R HGS+LF RG+TQ + V TLG Sbjct: 307 GIEANEVRRLIIEDKVRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGP 366 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D ++ + FM HYNF P + GE RMG P RREIGHG L RA+ VLP Sbjct: 367 MNDNQIIDDVTDVEYKRFMHHYNFPPYSVGETGRMGNPGRREIGHGALGERALSQVLPSE 426 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FI 474 +FPYT+R V+E+ ES+GSSS A++C +++LM AGVPI PVAGIAMGL+ D D + Sbjct: 427 EEFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEDSGKYT 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G EDH G MDFKVAGT GITA+QMD+K+ GI+E++ AL QAK R IL Sbjct: 487 VLTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVAGITEDVFREALSQAKGARAQILEN 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTV 593 M + + R +G + P++E I P++IR VIG GK+I I+E K++I+DDG V Sbjct: 547 MMTAIDKPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEACDEVKIDIEDDGHV 606 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + I A MIR I V +V IY+G+VV++ FGAFV+ DGL+HIS++ Sbjct: 607 VIYHMNREAITKAANMIRDIVRVAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKIC 666 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K D + GDT+ VK+++ DDRG++ +S K + Sbjct: 667 HERVEKVEDKLNIGDTIKVKVMEIDDRGRVNVSAKAL 703 >gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] Length = 735 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 307/696 (44%), Positives = 449/696 (64%), Gaps = 17/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ GR + +ETG IA+Q+ G+VL YG+TVVL+ + K+G DFFPLTV+++E+ Y Sbjct: 19 LDFCGRGITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLY 78 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+LRRE RP+E+ L +RMIDR IRPLF+ ++NE QV+ V+ D + S + Sbjct: 79 SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTEM 138 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M AS AL +S +PF GP+ G V ING+YV+NP + ++ + L V+GT+ AV M Sbjct: 139 AAMFGASLALCVSDIPFNGPIAGVIVGRINGEYVINPTPAQMEESDIHLTVAGTKYAVNM 198 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE A +++E+ +L AI+FGH K ++ ++A KE + + ++E + Sbjct: 199 VEAGAKEVNEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVK---LYTVDEAIDTE 255 Query: 248 IKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEG-----EIVSVFED 297 +++D +R + I +K R +ID+L + V+ F + E++S + ++ + Sbjct: 256 VRKDYEKAIREAVSIEKKLERYGKIDELTETAVAQFEAKEYASEADKNKAIKQVKEICHG 315 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+A VR ++++ KVR DGR + +R + +QV LL R HGS++F RG+TQ + V TLG Sbjct: 316 IEADEVRRLIIEDKVRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAM 375 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D ++ + FM HYNF P + GE RMG+P RREIGHG L RA+ VLP Sbjct: 376 NDNQIIDDVTEVESKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALAQVLPSVE 435 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475 +FPYT+R V+E+ ES+GSSS A++C +++LM AGVPI PVAGIAMGL+ D ++ + Sbjct: 436 EFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDESSSNYTV 495 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+K+ GI+E+I AL QAK R IL M Sbjct: 496 LTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVTGITEDIFREALAQAKVARGQILENM 555 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVK 594 +SE R +G++ P++E I P++IR VIG GK+I I+E+ K++I+DDG V Sbjct: 556 LAAISEPRADVGKYAPKLEQFYIDPEKIREVIGPNGKMINKIIEECDDVKIDIEDDGHVI 615 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I I A +MIR I V EV IY VV++ FGAFV+ DGL+HIS++S Sbjct: 616 IYHMDRTAINKAADMIRGIVKVAEVGDIYDATVVRIEKFGAFVNLFPGTDGLLHISKISH 675 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ERV K DV+K GDT+ VK+++ DDRG++ +S K + Sbjct: 676 ERVEKVEDVLKIGDTIKVKVMEIDDRGRVNVSAKAL 711 >gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans DSM 9485] gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans DSM 9485] Length = 755 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 327/699 (46%), Positives = 460/699 (65%), Gaps = 16/699 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 ++TV E AGR L LE GR A Q+DGAV+A YG+T++LATVV + ++G DFFPLTV+Y Sbjct: 6 IYTVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDY 65 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIP + +RE RPT ILISR+ DR +RPLF K + NE QVII D+E Sbjct: 66 EEKMYAVGKIPANFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDME 125 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P ++++AASAAL +S +PF GPV Q+ +++G+ V+NP++ E ++ LDL V+GT+ Sbjct: 126 NDPGPLAIIAASAALAISDIPFAGPVGAVQMGHLDGKLVVNPKMGEIEKSRLDLVVAGTK 185 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 DAVLMVE A +LSED +L A+I GH CK + E +L ++C K P V+D+ Sbjct: 186 DAVLMVEAGAYELSEDEMLQAVIEGHAVCKQICELQEQLVQLCGKPKRPFTPPVVDTS-- 243 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVS 293 LEE +S + + LR + P K R Q + LK +++++F++ E E+ Sbjct: 244 --LEEAISAWMGDRLRKAVRSPVKQEREAQTEALKAEVIAHFTADEPEEEIPNRTKEVSK 301 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 FE + VR +LD+ +R+DGR + +R IS +VG++ R HGS+LF RG TQ + + T Sbjct: 302 AFEKLLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIAT 361 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ DEQ VD L ++ HYNF P +TGE+ R+G P RR+IGHG LA R+++ VL Sbjct: 362 LGSPGDEQKVDDLGIETTKRYIHHYNFPPFSTGEIRRLGTPRRRDIGHGALAERSLYAVL 421 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472 P +FPYT+R+VSE+ S+GSSSMA+VCGSSL+LMDAGVPI PVAG+AMGL+ D Sbjct: 422 PSEEEFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDGR 481 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI G ED LG MDFKVAGT +G+T +QMD+K GI+ IM A QA+ GRL IL Sbjct: 482 WRVLTDIQGIEDALGDMDFKVAGTANGVTGLQMDIKTTGITYEIMRQAFAQARAGRLFIL 541 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M+ V+S R +L + PR+ + IP D+I +IG GGK IR I + TGA+++I+DDG Sbjct: 542 EKMNAVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICDTTGAQIDIEDDGR 601 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I + + A MI +T +V I+ G+VV + FGAFV+ +DG+VH+S+L Sbjct: 602 VFITAPDGEAAKKAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSEL 661 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +RV DVV GD + V ++D D + GKI LS + V Sbjct: 662 DEKRVENVEDVVSLGDEINVMVIDIDRNTGKISLSRRAV 700 >gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides DSM 266] gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 732 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 324/716 (45%), Positives = 458/716 (63%), Gaps = 38/716 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVG 71 G+ L +ETG++A+Q+DGA L G+T+VLATVV ++ QD+FPL V Y+E+ A G Sbjct: 12 GKILSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RE RP+E EIL +R+IDR++RPLF Y ETQ+I+ V D + V+ Sbjct: 72 KFPGGFFKREGRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSDQINDADVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 VAASAA+M+S +PF + +V ING++++NP ++E QGS +D+ + GT + + M+E Sbjct: 132 VAASAAIMVSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDIDICIGGTANTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEMSQMIK 249 E ++SE +LDAI FGH + + ++A A+ + K +KL+E ++ + + Sbjct: 192 EMKEISEAEMLDAIKFGHEAIRKICALQDEMAAEIARPQRSFAPVKAPAKLKEVIAGLSE 251 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--------GEIVS-------- 293 L+ + P CK+ D +K S + S E EI + Sbjct: 252 TRLKELAYTP----LCKE--DRAEKTASVYKETLQSTLELFKALLTPEEIAAEPEKALCL 305 Query: 294 ----VFEDIQA---KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + E+I A KV+R ++LD R+DGR + +R IS ++G++ R HGS+LF RG+T Sbjct: 306 NAHIIEEEIHAVEKKVMRHMILDDGKRLDGRTLDEIRPISIELGIIPRAHGSALFTRGET 365 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 QA+V +TLGT++D Q VD+L+ + FM+HYNF P + GE R+G RREIGHG LA Sbjct: 366 QALVTITLGTKKDAQSVDTLTDSADKRFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAE 425 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 R+I V P FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL Sbjct: 426 RSIKMVSPSETDFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGL 485 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+GD + +LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G+ +I+ AL+QA++ Sbjct: 486 IKEGDAYSVLSDILGNEDHLGDMDFKVAGTEDGITACQMDIKIDGLDYHILETALEQARK 545 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GRLHIL++M + SR +L ++ PR+ + IP D I +IG GG+ IR I E+TGA++N Sbjct: 546 GRLHILDKMEVAIPISRGELAQYAPRLTSIQIPVDAIGLIIGKGGETIRSITEETGAEIN 605 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDG 645 I+DDGTV IA SS AA E I+++ PE+ Y G+V + D GAFV F DG Sbjct: 606 IEDDGTVTIACSSPEGTNAAVETIKTLISKPEIGNTYLGKVRDIRDELGAFVEFLPKTDG 665 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-----DDRGKIKLSMKVVDQNTGK 696 LVHIS++S ERV K SD +K GD V VKL+D + + LS+K V+ K Sbjct: 666 LVHISEISKERVTKVSDHLKVGDRVKVKLVDIRKDPRTGKNRFALSIKAVESEPEK 721 >gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271] gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271] Length = 700 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 301/697 (43%), Positives = 448/697 (64%), Gaps = 8/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + H AGRPL +E G +A+Q++GAVL YG+TVVL+ V + G DFFPLT Sbjct: 1 MSNKHVFSTTLAGRPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YAVGK+PGG+++RE RP+E L SR+IDR +RP+F + +NE Q+ V+ Sbjct: 60 VHYIEKMYAVGKVPGGFIKREGRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + +P + +M+ AS AL +S +PF+GPV G V +NG+ V+NP + + + S ++L V+ Sbjct: 120 DQDCTPEMAAMLGASLALAVSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDIELTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT A+ MVE A ++SE +L+A++ GH K ++ +++ KE + + Sbjct: 180 GTATAINMVESSAKEVSEADMLEALLKGHAAIKELVAFQNEIVAQIGKEKFEFTLAEVAP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293 ++ ++ + K + + EK R +D + ++ +F++ ++ ++ ++ + Sbjct: 240 EVAAQVGERYKSRMIQAIQTQEKKAREAAVDAVMEEATEFFAAVYADRDDYDQLMKDVST 299 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 D++ VR ++ ++VR DGR + +R +S+ V LL R HGS LF RG TQ + T Sbjct: 300 ALHDLEKDEVRRLITKERVRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAAT 359 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + Q +D L + F+ HYNF + GE R+G+P RREIGHG L RA+ V+ Sbjct: 360 LAPLGEHQVIDGLGIEEGKRFIHHYNFPNFSVGETGRVGSPGRREIGHGALGERALKQVI 419 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPYT+R+VSE+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV +G+D+ Sbjct: 420 PAPEDFPYTIRLVSEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVMEGEDY 479 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+ AL QAK+ RL IL+ Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTAAGITALQMDIKIQGITEAILTEALTQAKKARLEILD 539 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 E+ L E+R +L + P+++I+ I PD+I+ VIG GG+ I GI++ TG K++ID G V Sbjct: 540 ELVSTLPEARKELSPYAPKIDIIQINPDKIKVVIGRGGETINGIIDATGVKIDIDQTGNV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IASS I AR+MI + EV ++Y G+V ++ FGAFV +DGLVHIS+L Sbjct: 600 SIASSDQDMINKARQMIEDLVREVEVGQVYTGKVKRIEKFGAFVEVLPGKDGLVHISELE 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RVA+ DV+K GD V VK+++ D++G+I LS KV+ Sbjct: 660 HRRVAQVEDVLKIGDVVEVKVIEIDNQGRINLSRKVL 696 >gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 731 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 321/708 (45%), Positives = 461/708 (65%), Gaps = 29/708 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71 G+ L +ETG++A+Q+DGA + G+T+VLATVV + + QD+FPL V Y+E+ A G Sbjct: 12 GKILSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 71 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 K PGG+ +RE+RP+E E+L +R+IDR++RPLF Y ETQ+II V+ D + V+ Sbjct: 72 KFPGGFFKRETRPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSDQINDGDVLGG 131 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +AASAA+M+S +PF + +V ING++++NP ++E + LD+ + GT+D + M+E Sbjct: 132 IAASAAIMVSDIPFRNAMSEVRVGRINGKFIINPDVNELAESDLDICIGGTKDTICMLEG 191 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEEEMSQMI 248 E ++SE +LDAI FGH+ K + ++A K P V + ++L E + Sbjct: 192 EMQEISEAEMLDAIKFGHDAIKRLCTLQDEIAAAVGKPDRPFV-PVQVPAELTEAVRSTC 250 Query: 249 KEDLRVSCFIPEK---------YVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEI 291 + L+ + P + ++ + I + +K S SSE + NE I Sbjct: 251 ETRLKELAYTPLRKEDRADQTAHIYRETIQAIVEKFKSSISSEDIAADPAKALCLNEHII 310 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++ KV+R ++LD R+DGR E VR IS ++G++ R HGS+LF RG+TQA+V Sbjct: 311 EEEIHSVEKKVMRHMILDDSKRLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVT 370 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +TLGT++D Q VD+L+ + FM+HYNF P + GE R+G+ RREIGHG LA RAI Sbjct: 371 ITLGTKKDAQSVDNLTNSADKKFMLHYNFPPFSVGETGRIGSTGRREIGHGNLAERAIKM 430 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V P +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K+G Sbjct: 431 VAPTEQEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGS 490 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +LSDI G+EDHLG MDFKV GT GITA QMD+KI G+ +++ AL+QA++GRLHI Sbjct: 491 AYAVLSDILGNEDHLGDMDFKVTGTRDGITACQMDIKIDGLDYHVLETALEQARKGRLHI 550 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M + + ESR +L +F PR+ + +P + I +IG GG+ IR I E+TGA++NIDDDG Sbjct: 551 LDKMDEAIPESREELAQFAPRLTTIKVPVESIGMIIGKGGETIRSITEETGAQINIDDDG 610 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHIS 650 TV IA +S+ AA I+++ PEV +Y G+V + D GAFV F DGLVHIS Sbjct: 611 TVTIACTSVEGTNAALATIKTLLAKPEVGTVYLGKVRDIRDELGAFVEFLPKTDGLVHIS 670 Query: 651 QL-STERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692 ++ STERV K SD + GD + VKL+D D R GK + LS+K V+ Sbjct: 671 EISSTERVNKVSDHLNIGDKIKVKLVDVRKDPRTGKTRFALSIKAVEN 718 >gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 696 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 300/694 (43%), Positives = 445/694 (64%), Gaps = 4/694 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ + E AGR L +E G+IA ++G + +YG+T+++ V +DG DFFPL+ Sbjct: 1 MFEHRIFKTEIAGRTLTVEIGKIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+++E+ Y+VGKIPGG+L+RE R +E L SR+IDR IRPLF + ++N+ QV+ V+ Sbjct: 61 VDFEEKLYSVGKIPGGFLKREGRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +V+M+ +S AL +S +PF GP V I+G++VLNP + + S L L VS Sbjct: 121 EQDCTPDIVAMLGSSIALSISDIPFNGPTASVLVGLIDGEFVLNPNQQQREDSDLHLVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++A++MVE AN++ ++VVLD I++ H E K ++E I + E ++ S+ Sbjct: 181 GTKEAIMMVEAGANEVDDNVVLDGILYAHEEIKKIVEFIEGIVAEVGHEKCPVELHVPSQ 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFE 296 +E +++ +E +R + EK R +++D + ++ ++YF + ++ E G+I V Sbjct: 241 EVEAAVNEFAREKMREAVKTVEKMERTEKMDAVSEETMAYFEEKWDNFEEVAGDIEDVLH 300 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 DI VR+++ D VR D R + +R I +VG++ RTHGS++F RG TQ + V TLG Sbjct: 301 DIIKDEVRSLIADHSVRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGA 360 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D L + +M HYNF + GE P RREIGHG LA RA+ PV+P Sbjct: 361 LGDVQRLDGLDEEENKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALLPVIPSK 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPY +R+VSE+ S+GS+S A+VC S+L+L+DAGVPI VAGIAMGL+K +L Sbjct: 421 EDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAVL 480 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++ AL+QA+ GRLHIL EM Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMK 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 KV++E R +L ++ P++ M I PD+IR+VIG GGK+I I+++TG K++I+ G V I Sbjct: 541 KVITEPRPELSQYAPKIVKMLIDPDKIRDVIGPGGKMINKIIDETGVKMDIEQTGEVFIV 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 I A EM+ I E KIYKG V ++ FGAFV + GL+HISQ+S ER Sbjct: 601 GVDPEMINRALEMVEEIVAEAEPGKIYKGTVTRIEKFGAFVEILPGKQGLLHISQISKER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +A DV+ GD + V + + DD+ +I LS+K + Sbjct: 661 IANVEDVLAIGDQIDVLVTEIDDKDRINLSIKAI 694 >gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis DSM 21211] gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis DSM 21211] Length = 718 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 316/687 (45%), Positives = 438/687 (63%), Gaps = 9/687 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T GR L LETG++A+ GAV YG+ V+L T R DF PLTV ++E Sbjct: 5 TYSATLGGRELTLETGKLAKLVSGAVTVRYGDAVLLVTA-QAREDVSPLDFLPLTVEFEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVG+IPG + RRE RP E IL +R+ DR IRPLF K Y++ETQVII V+ D + Sbjct: 64 RHYAVGRIPGSFHRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQVG 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 V+ + ASAAL LS +P+ GP +V ++ G+YV+NP D+ D SLDL V+GT+DA Sbjct: 124 ADVLGPIGASAALSLSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSLDLVVAGTRDA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEE 242 +LMVE A + E++++ AI F H E +P+I+ I ++ + +E V D+ L Sbjct: 184 ILMVEAGAQVVEEELLVGAIEFAHREMQPIIDLIEQMQREVGREKFNYVADADLAVDLVP 243 Query: 243 EMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFEDI 298 E+++ + LR + P+K R + L+ +++ +E + G + F + Sbjct: 244 ELTEAARSGGLRDALLTPKKKDRSVALKALRDRLIGERVPEGTEDADARTGAFKTAFGRV 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + +R ++L++ VR DGR+S TVR I + L R HGS++F RG+TQ + TLGT Sbjct: 304 EKQELRRLILEEDVRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTER 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE +D L+ + + FM+HYNF P +TGEV RM SRRE+GHG LA+RAI VLP + Sbjct: 364 DEILIDDLTDDKNDRFMLHYNFPPYSTGEVKRMSGQSRREVGHGNLAKRAIRAVLPSFEE 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +RIV ++ ES+GSSSMATVC +L+LMDAGVPI PVAG+AMGLV +GD + +L+D Sbjct: 424 FPYVIRIVGDVLESNGSSSMATVCAGTLSLMDAGVPIKAPVAGVAMGLVMEGDRYRVLTD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKV GT G+TA+QMD+KI GI+ IM AL QAK RLHIL +M++V Sbjct: 484 ILGLEDALGDMDFKVCGTAEGVTALQMDIKIQGITPAIMREALAQAKEARLHILGKMAEV 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 L R +L PR+ + I P++I +VIG GGK IR + E GA+V I++DGTV+I S+ Sbjct: 544 LPAPRAELSPTAPRIITVKINPEKIGSVIGPGGKQIREL-EAMGAQVTIEEDGTVRIFSA 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A +A RE I +IT +V + + G VVK FGAF++ +DG++HISQ+S ERV Sbjct: 603 DGAAAQAVRERIEAITREAKVGEEFDGTVVKTAAFGAFINLFPGKDGMLHISQMSEERVN 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKL 685 DV+ GD V VK+ + DDRGKI L Sbjct: 663 AVEDVMNVGDKVRVKIANVDDRGKIDL 689 >gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1] gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1] Length = 895 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 305/682 (44%), Positives = 448/682 (65%), Gaps = 10/682 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E+ G+ L +E G +A+Q++G+VL Y +TV+L+T V + KD DFFPLTV Y+E+ Y Sbjct: 8 LEFYGKTLTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKD-VDFFPLTVTYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+L+RE RP+E+ L +RMIDR IRPLF+ ++NE QV+ V+ D +SP + Sbjct: 67 SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQNASPEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187 +M AS AL LS +PF GP+ G V I+G++ +N ++ + SL +L V+GT++A+ M Sbjct: 127 AAMFGASLALCLSDIPFNGPIAGVNVGLIDGEFTINAGPEDMERSLINLEVAGTKEAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE +A ++ E+ +L+A++FGH++ K +I K+ + C KE I I + S + EE+ Sbjct: 187 VEADAKEVDEETMLNALMFGHDKIKELIAFQEKVVEACGKEKIEIPLFELDSAIVEEVES 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE-----GEIVSVFEDIQA 300 + KE + + IP K R IDD+ ++V+ F + +++ E ++ V D++ Sbjct: 247 LAKERMIKAVSIPGKLERYGAIDDINAEVVTLFENRDYADLKEQAKVLKQVKIVLHDLEK 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + VR ++AQ+ LL R HGS+LF RG+TQ + V TLG + Sbjct: 307 DEVRRLITEDKIRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLGALGEH 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + FM HYNF P + GE RMGAP RREIGHG L RA+ V+P +FP Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEDEFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSE+ ES+GSSS A++C SS+ALM AGVPIS PV+G+AMGLVK GDD+ IL+DI Sbjct: 427 YTIRLVSEVLESNGSSSQASICASSMALMTAGVPISNPVSGVAMGLVKKGDDYTILTDIQ 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGT GI A+QMD+KI GI++ I+ AL QA GR I++ M ++ Sbjct: 487 GMEDHLGDMDFKVAGTKKGICALQMDIKIEGITKEILQEALAQANVGRQQIMDCMLGAIA 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSS 599 E + +L + P+V +M I P+QI++VIG GGK I I+E++ K++I+ DG V I Sbjct: 547 EPKKELSPYAPKVFMMRIEPEQIKDVIGPGGKNINEIIEKSNDVKIDIEQDGRVTIYHFD 606 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I A ++I +I EV ++Y G+VV+V D AFV +G +H+ ++ ER+ K Sbjct: 607 QDAIHTAAKLIENIVKKAEVGEVYDGKVVRVEDKFAFVELFEGTNGFLHVGDVAHERINK 666 Query: 660 TSDVVKEGDTVWVKLLDFDDRG 681 SDV+K GDT VK++ D+G Sbjct: 667 VSDVLKVGDTAKVKVIKITDKG 688 >gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 699 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 312/703 (44%), Positives = 448/703 (63%), Gaps = 17/703 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD V++E AGR L TG+IARQS GAV+ YG+TV+L+TV + + DFFPLT Sbjct: 1 MFDERKVQMELAGRTLTFSTGKIARQSCGAVMVQYGDTVLLSTVNRSKEPRKENDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+ YA GK PGG+ +RE +P+ N L +R+IDR IRP+F + + ++ V Sbjct: 61 VDYIEKFYAAGKFPGGFNKREGKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVNTVFSF 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179 D +++P + ++ +S ALMLS LPF GPV G + Y NG+++LNP + + L+L V+ Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVIGYKNGEFILNPTPEELETSELELSVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT++A+ MVE AN+L E+ +L AI+F H K + + AK KE + + + Sbjct: 181 GTREAINMVEAGANELDEETMLKAIMFAHENIKKICDFQEAFAKEVGKEKMEFVKPEVMP 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---- 294 ++ + + E L+ + K R + +D L+++++ F E+ + EGE V + Sbjct: 241 LVKNFIDERGMERLQAAVLTLGKKNREEAVDSLEEELLETFKVEN--YGEGEEVEIPEDV 298 Query: 295 -------FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + D+ K+VR +L K R+DGR + +R + A+V L HGS++F RG+TQ Sbjct: 299 LIEFKGYYHDLMKKLVRDAILYHKHRVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQ 358 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 A+V+ TLGT+EDEQ VD L F +HYNF P + GE RMG+P RRE+GHG LA R Sbjct: 359 AVVITTLGTKEDEQLVDDLEKEYYKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAER 418 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ V+P +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+ Sbjct: 419 ALKYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLI 478 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+GD+F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA Sbjct: 479 KEGDEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDA 538 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R IL M+ + + + PR+ M IP D+I +IG GGK I+GI++QTGA V+I Sbjct: 539 RNEILELMNNTIP-APAPIKSNVPRIYQMNIPTDKIAVLIGPGGKNIKGIIDQTGATVDI 597 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG V I A + +++ S EV ++Y G+VV + FGAF+ ++GL+ Sbjct: 598 NDDGKVSIFCKDEAALNETVKLVNSFVKDVEVGEVYSGKVVSIQKFGAFMEILPGKEGLL 657 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 H+S++S ERV K DV+K GD VK++ D+ GKI LS K V Sbjct: 658 HVSEISQERVEKVEDVLKVGDVFDVKVISTDN-GKISLSKKRV 699 >gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium colombiense DSM 12261] gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium colombiense DSM 12261] Length = 748 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/689 (44%), Positives = 451/689 (65%), Gaps = 16/689 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE G + ETG +A+Q++G+++A G+TVVL T + + G DFFPL V+++ER Y Sbjct: 7 IEIGGHEMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDFEERYY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 + GKIPGG+++RE RPTEN IL +R+IDRSIR LF + + + V+ V+ D + P V Sbjct: 67 SAGKIPGGFIKREGRPTENAILSARVIDRSIRSLFDENLRYDIHVVATVLSVDQLNPPSV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFVSGTQDAVL 186 +++ AAS ALM+S +P+ GP+ ++ YIN Q V+NP L+E + LDL VSG +D + Sbjct: 127 LAINAASVALMISEIPWGGPIGAVRIGYINDQLVVNP-LEEQMLESKLDLLVSGHKDGIT 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLE 241 MVE AN++SE++++DA+ H E K ++ ++ K KE I I +F S L Sbjct: 186 MVEAGANEVSEELLVDALDLAHTEIKKIVAMQEEIRKQIGKEKIDIPEPEFFEEIDSWLG 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 EM + + E + I EK R ++I +K + +F+ E+ E I + +++ K Sbjct: 246 AEMQKHVLE----AVSIHEKKPRAEKIRYVKTTSIEHFA-ENYPGTEAYISAAVDEMVKK 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-DE 360 +R+ +L+++ R DGR + +R I+ +VG+L R HGS+LF RG+TQA+VV TLG D+ Sbjct: 301 TMRSRILNERERADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDD 360 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + N F++HYNF P + GEV M P RREIGHG LA RA+ P++P +F Sbjct: 361 QILDGLKQDEPNKRFILHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPIIPDEVEF 420 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VS+I ES+GSSS A++CG SLALM++GVPI++ VAGIAMGL+K+G+ ILSDI Sbjct: 421 PYVVRLVSDILESNGSSSQASICGGSLALMNSGVPINRHVAGIAMGLIKEGEKVEILSDI 480 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT G+TA+QMD K GGI+ ++ AL QAK GRL IL +M + Sbjct: 481 QGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREVLKKALNQAKEGRLFILEKMESAI 540 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E L + PR+ + I P++IR++IG GGKVIRGI ++TG K+N++D+G V IA +S Sbjct: 541 EEPS-GLSPYAPRIYVTHIDPEKIRDIIGPGGKVIRGITQETGVKINVEDNGEVYIAGTS 599 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +E A +I+ +T E +IY G+V ++M+FGAF+ ++GL+HIS++S RV K Sbjct: 600 SEGVERALAIIKGLTKELEPGEIYLGKVTRIMNFGAFIECLPGKEGLLHISEISPHRVGK 659 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV GDTV V + + DD G+ L+ K Sbjct: 660 VEDVFGVGDTVLVMVKEIDDMGRTNLTRK 688 >gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens DSM 2489] gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens DSM 2489] Length = 696 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 298/681 (43%), Positives = 446/681 (65%), Gaps = 16/681 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG+I +Q++G V A G T V+ATV +K+G DF P+TV Y E+ YA GKIPG Sbjct: 14 LILETGKIGKQANGCVYAQIGGTAVIATVCASSEVKEGLDFVPVTVEYNEKFYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RP + EIL+SR+IDR +RPLF + E Q++ + D + P +++++A+S Sbjct: 74 GFVKREGRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGVNPPDILAVLASS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AA+ +S +PF GPV G +V Y+NG+Y+LNP ++ ++ L++ V+GT+D MVE AN+ Sbjct: 134 AAVSISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGTKDGFTMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQMIK 249 +SE+V+L A+ + +L K+ KE P+ + ++ ++ E +++ Sbjct: 194 VSEEVMLGALEKAQGFITDMCLLQEELVKLAGKEKLPLAPLDVKLENADAIKAEAIPLMQ 253 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVML 308 E +CF K R + +K K+ +S + + ++ ++F+DIQ ++R+ +L Sbjct: 254 E----ACFQKGKMARGNAVKAVKAKIAEKYSEQLEDEIQAKLFNALFDDIQYDLLRSSIL 309 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 +K +R+DGR +E +R I+ +V +L R HGS+LF RG+TQ++ V TLGT DEQ D + G Sbjct: 310 EKGLRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIEG 369 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + +F++HYNF P + GEV ++ RREIGHG LARR++ P++P ++FPYT+R+VSE Sbjct: 370 DRTENFILHYNFPPYSVGEVGKL-TTGRREIGHGNLARRSLAPMIPSRSEFPYTIRVVSE 428 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFIILSDISGDEDH 485 I ES+GSSS A+ CG L+L+ AGVP+ K VAGIAMGL+ DG + ILSDI G+EDH Sbjct: 429 IMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGPQYKKYAILSDILGEEDH 488 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT GIT QMD+KI G+S +IM AL+QAKRGR HIL+ M K +S+ + Sbjct: 489 LGDMDFKVAGTRDGITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIMEKCISKPQ-P 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + + P++E M I D+I +IG GGK ++ + +Q +N +DDGTV I S +A Sbjct: 548 ISPYAPKIETMKIAVDKIGALIGPGGKNVKALCQQYNVTINTEDDGTVTIYGKSGVSTDA 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+ I+ I + PE IY+G V ++MDFGAF+ ++GL HIS+LS RV K SD++K Sbjct: 608 AKAAIKGICEDPEPGTIYQGTVKRIMDFGAFIEILPGKEGLCHISKLSRNRVEKVSDILK 667 Query: 666 EGDTVWVKLLDFDDRGKIKLS 686 EG + VKLL+ D G++ LS Sbjct: 668 EGQVIPVKLLEVDKMGRLNLS 688 >gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon aurantiacus ATCC 23779] gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon aurantiacus ATCC 23779] Length = 777 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 305/701 (43%), Positives = 449/701 (64%), Gaps = 19/701 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 VH+V +E AGRPL +E GR+A+ ++GAVL YG+TV+LA V +DG DFFPLTV+Y Sbjct: 6 VHSVTVELAGRPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDY 65 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPG + +RE RPTE IL SR+ DR +RPLF K Y N+ QV I + D Sbjct: 66 EEKMYAAGKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQV 125 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ ASAAL++S +PF PV Q+ +I+G + +NP + + S LDL V+GT Sbjct: 126 NDPGPLAIIGASAALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTS 185 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF----- 237 +AV+MVE A +L+E +L+A+ GH + VI+A +LA+ C K K+F Sbjct: 186 EAVMMVEASAYELTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKP-----KKEFVAPVV 240 Query: 238 -SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIV 292 + L++E+ + + +K R D L+ ++ FS+ E + + Sbjct: 241 DTSLQDEIKAWMGNRFLQALNNSDKAAREAATDSLRTDVLEQFSAGVAEEELAARVKAVT 300 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 ++ + VR +L++ +R+DGR +R I+ VG+L R HGS LF RG TQ + V Sbjct: 301 KNYDALVKDEVRASILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVA 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG+ DEQ +D L +M HYNF +TGE P RR+IGHG+LA RA+ PV Sbjct: 361 TLGSPGDEQRLDDLGIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDG 470 LP+ +FPYT+R+VSE+ S+GSSSMA+VCGSSLALMDAGVPI PVAG+AMGL+ K+ Sbjct: 421 LPEKDKFPYTMRLVSEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEA 480 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 F +L+DI G ED LG MDFKVAGT +GITA+QMD+K GI+ IM A +QA++GR+ Sbjct: 481 GQFSVLTDIQGLEDALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVF 540 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL++M+++++ +R + +F PR+ + I P +I +IG GGK IR I+EQTGA+++++DD Sbjct: 541 ILDKMNEIINTARNDISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDD 600 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V + + A+ +I +T +V +I+ G+VV++M +GAFV+ +DG+VH+S Sbjct: 601 GRVFVTTPDADGARMAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVS 660 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 +L +RV DVVK GD + V ++D + GK+ LS + + Sbjct: 661 ELDEKRVENVEDVVKIGDELTVMVIDVEPGTGKLSLSRRAI 701 >gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] Length = 697 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 293/684 (42%), Positives = 440/684 (64%), Gaps = 4/684 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +EWAGR L +E G++A+Q++GAVL YG+T VL+T + KD FFPLTVNY+ER Y Sbjct: 10 MEWAGRTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYEERLY 68 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+++RE RP+++ +L SR+IDR IRP+F ++N+ QVI VM +D ++ + Sbjct: 69 AAGKIPGGFIKREGRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEM 128 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S AL +S +PF GP+ G + I+G++++NP + + S ++L V+G +DA+ M Sbjct: 129 AAMIGSSLALSVSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDIELVVAGNKDAINM 188 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A ++ E+ +L+A+++GH+E K +I + KE + + K + LE E+ Sbjct: 189 VEAGAEEVPEETILEALMYGHDEIKRIIAFQEDIVSKVGKEKMEVQLKTVDADLEAEIRD 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + L+ + + EK+ R + + ++ + +E + E V + + + VR + Sbjct: 249 KVGNQLKTAALVEEKHAREDAVKAVMDSILDQYVTEEEDRSV-EAKEVLDKLFKETVRIL 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + +K+R DGR + +R +++++ +L RTHGS LF RG TQA+ V TLG D Q +D L Sbjct: 308 ITKEKIRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + FM HYNF + GE + P RREIGHG L RA+ V+P FPYT+R+V Sbjct: 368 GIEETKRFMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALEQVIPSEEDFPYTIRLV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GS+S A++C S+LA+M AGVPI PVAGIAMGLVK +D +L+DI G ED L Sbjct: 428 SEVLESNGSTSQASICASTLAMMAAGVPIKAPVAGIAMGLVKHEEDVTVLTDIQGMEDAL 487 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT G+TA+QMD+KI GI ++ AL QA+ GR+ IL M +S R +L Sbjct: 488 GDMDFKVAGTKKGVTAIQMDIKISGIDRAVLEQALSQAREGRIKILESMESAISTPREEL 547 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E+ P++ M+I PD+IR+VIG GK+I I+E TG K++I+ DG V IAS++ A Sbjct: 548 NEYAPKILTMSINPDKIRDVIGPSGKMINQIIEDTGVKIDIEQDGKVYIASANHEMNLKA 607 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +++I I +V + Y G+V ++ FG FV +DGLVHISQL+ ERV K DVV Sbjct: 608 KQIIEDIVREVQVGETYLGKVKRIEKFGCFVELFKGKDGLVHISQLAKERVNKVEDVVSL 667 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VK+ + D++G++ LS KV+ Sbjct: 668 GDEILVKVTEIDNQGRVNLSRKVL 691 >gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii DSM 519] gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii] Length = 699 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 307/689 (44%), Positives = 445/689 (64%), Gaps = 11/689 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E GR L +E G++A ++GA + G+TVVL ++G DFFPL+V+Y+E+ Sbjct: 6 ETSIGGRNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+ GKIPGG+++RE RP+E IL SR+IDR IRPLF K Y+N+ QV+ V+ D S+P Sbjct: 66 YSAGKIPGGFIKREGRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNSNPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 ++M+ +S AL +S +PF GP V I+G++++NP LD+ S + L VSGT++A++ Sbjct: 126 TMAMIGSSIALSISSIPFNGPTGSVSVGLIDGEFIINPDLDQRAKSQMYLVVSGTKEAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEE-- 242 MVE ++++SED +L AI+F H E K ++ I ++ K + +V+ F EE Sbjct: 186 MVEAGSSEISEDTMLKAILFAHEEIKKIVGFIEEIVNDIGKPKDEVVL----FVPQEEIL 241 Query: 243 -EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +S+ K+ ++ + +K R + +D +KK ++ +F + N ++ + + Sbjct: 242 SAVSEYGKQKMKDAILTKDKQERLENMDKVKKDILEHFVDIYPD-NMKDVSEIIYKLTKD 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L K+R D R E +R I ++ G+L RTHGS+LF RG TQ + + TLG D Q Sbjct: 301 GVRELILKDKIRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D LS + +M HYNF + GE P RREIGHG LA RA+ P+LP FPY Sbjct: 361 ILDGLSEEEEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALEPMLPSKEDFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +R+VSE+ S+GS+S A+VCGS+L+L+DAGVP+ VAGIAMGL+K+GDD ILSDI G Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAILSDIQG 480 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED LG MDFKVAGT+ GITA+QMD+KI GI E I+ AL+QA+ GRLHILNEM K LS Sbjct: 481 MEDFLGDMDFKVAGTEKGITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKKTLSA 540 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R ++ E+ P + M I PD+IR+VIG GGKVI I+E+TG K++I++DG V IA+ + Sbjct: 541 PREEISEYAPMIITMKIDPDKIRDVIGPGGKVINKIIEETGVKIDIENDGNVFIAAVARD 600 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + AR MI +I VPEV + Y G+V K+M FGAF+ ++GL+H+SQ+ +RV K Sbjct: 601 MGKKARAMIENIVKVPEVGQKYMGKVTKLMAFGAFMEILPGKEGLLHVSQIDVKRVNKVE 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD V L + D +G++ LS K + Sbjct: 661 DVLSVGDEFEVLLTEIDAQGRMNLSRKAL 689 >gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] Length = 695 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 314/680 (46%), Positives = 456/680 (67%), Gaps = 7/680 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 +WAG+ L +E G +ARQ++ AV+ YG+TVVL T V + KD DFFPLTVNY+E+ YA Sbjct: 11 QWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+LRRE RP L +R+IDR IRPLF ++NE QVI V+ + + P + Sbjct: 70 VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S +L +S +PF+GP+ G V Y++G+YV+NP +++ ++ ++DL V+GT DA+ MV Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTSDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247 E A ++SE+++L+AI+FGH E K +IE ++ +E + ++ K + + E+ M Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIEFQQQIVNEIGQEKMAVELKVIDETIYNEVLSM 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303 ++ + I +K R + I +K+K++ F ++ +E +IV + I V Sbjct: 250 ALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEERATAEDELDIVKEAKLSLDKIVKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + + KVR DGR +R ++++V +L RTHGS+LF RG TQ++ VVTLG DEQ + Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM+HYNF + GEV AP RREIGHG L RA+ V+P FPYT+ Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEI ES+GSSS AT+C S+ALM AGVPI VAGIAMGLVK + + IL+DI G E Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKSQVAGIAMGLVKKDEHYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI G+SE I+ +L+QA+ GRL IL+ M+ +++E R Sbjct: 490 DHLGDMDFKVAGTAEGITALQMDIKIDGLSEQILKESLEQARVGRLQILDHMNSIIAEPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ F P+++I+ I P++I++VIG GGKVI I+E+TG K++I+ +G V I+S + I Sbjct: 550 QEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDVFISSPEIEGI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A E+I +IT EV +IY +V ++ FGAFV D LVHIS+L+ ERV K DV Sbjct: 610 NKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLAEERVNKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKI 683 VK GDT+ VK++ D++G++ Sbjct: 670 VKVGDTLKVKVIKIDEKGRV 689 >gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] Length = 750 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 317/702 (45%), Positives = 453/702 (64%), Gaps = 20/702 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ V G+ + ETGR+A Q+ GAV G TVVL TV + L+ + FFPLT Sbjct: 5 IFNPTRVTATVGGKEIIFETGRLANQAHGAVWVQCGGTVVLVTVC-SQPLEFDKGFFPLT 63 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V Y E+ YA G+IPG + RRE RP+E E L+SR+IDR IRPLF K + QV+ +V+ Sbjct: 64 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D E+ V+++ ASAA+MLS LPFEGPV G ++ I+GQ+VLNP +E + S L++ Sbjct: 124 ADQENESDVLALTGASAAVMLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERSDLNIVF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKD 236 + ++DA+ MVE EA + EDV++DA+ +G E +P+I+A KL ++ KE P D Sbjct: 184 AASRDALTMVEGEATFVPEDVIIDALEWGRKEIQPLIDAQLKLRELAGKEKMPFTPHQDD 243 Query: 237 ---FSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 ++++E + I+E LRV PEK R +K K++ ++ +W E E + Sbjct: 244 PVLVARVQELAREAGIEEALRV----PEKLARKDARKAVKDKVMEALLND-PAWAESEAL 298 Query: 293 S----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 + D++ K++R ++++ VR+DGRD++TVR I Q +L R HGS++F RG+T++ Sbjct: 299 KEVGEIIGDLEKKIMRARIVNEGVRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKS 358 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 +VV TLG+ DEQ + SLSG FM+HYNF P + GEV + SRREIGHG LA ++ Sbjct: 359 LVVTTLGSSTDEQRMGSLSGDVTKRFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKS 417 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PV+P A FP+T+R+VSE ES+GSSSMA VCG L+LMDAG+PIS PVAG+AMGL+K Sbjct: 418 LRPVMPADADFPFTVRVVSETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIK 477 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +GD FI+L+DI GDED LG MDFK+AGT G+T +QMD+KI G++ +IM A+QQA GR Sbjct: 478 EGDKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTDIMRQAMQQAHEGR 537 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL EM+K L E R +L + P+ + + PD IR +IG GGK I+ I TGA V+I+ Sbjct: 538 LHILAEMAKALPEPRKELSRYAPQHAEIFVNPDIIRLIIGPGGKNIKAITTATGASVDIE 597 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D G V I + + +E AREM+ PE+ K Y +V K+M+ GA V + LVH Sbjct: 598 DSGRVSIFAPTADALEKAREMVTYYDQRPELGKNYTAKVKKIMEIGAIVEVLPNVEALVH 657 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +SQL RV + DV + G+ + VK+++ + +I+ S K V Sbjct: 658 VSQLDVNRVEQPGDVARLGEDMVVKVIEING-DRIRASRKAV 698 >gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM 16795] gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM 16795] Length = 701 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 298/692 (43%), Positives = 445/692 (64%), Gaps = 2/692 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ +E AGR L +E G+IA+ + G+ + YGET+V+ V ++G DFFPL+ Sbjct: 1 MFEHKIFTMELAGRELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ Y+VGKIPGG+L+RE + +E L SR+IDR IRPLF K ++N+ QV+ V+ Sbjct: 61 VDYEEKLYSVGKIPGGFLKREGKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + +P VV+M+ +S AL +S +PF GP V ++G V+NP ++ ++ SL L VS Sbjct: 121 DHDCTPDVVAMIGSSVALSISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSSLHLTVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238 GT+DAV+MVE A+++ E ++L+AI+ H E K ++ I ++ KE + I+ K Sbjct: 181 GTKDAVMMVEAGADEVPESLMLEAILTAHEEIKKIVAFIEEIVAEVGKEKMEFIEPKADE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +E ++ ++ + ++ + + EK R + +D +K +++ F E G+IV+V + I Sbjct: 241 DIEAKVRELATDKMKEAVRVIEKLERQEAMDAVKNEVLDSFDEEALEEFGGDIVAVLDKI 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VR +++ + R D R ++ +R I G + RTHGS LF RG TQ + + TLG Sbjct: 301 IKEEVRKMIVHEGRRPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALG 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + +M HYNF + GEV P RREIGHG LA RA+ PV+P + Sbjct: 361 DVQILDGLDEEESKRYMHHYNFPAYSVGEVRPSRGPGRREIGHGALAERALLPVIPSKEE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSE+ S+GS+S +VCGS+L+L+DAGVPI VAGIAMGL++ ILSD Sbjct: 421 FPYAIRLVSEVLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIEQDGKIAILSD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDHLG MDFKVAGT+ GITA+QMD+KI GI E I+ AL QA+ GRLHILNEM K Sbjct: 481 IQGMEDHLGDMDFKVAGTEHGITAIQMDIKIAGIDEEILRTALAQARVGRLHILNEMRKT 540 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + R L ++ P++ M I PD+IR+VIG GGKVI I+++TG K++I+ G V I+ Sbjct: 541 IDAPRPHLSKYAPKIITMNINPDKIRDVIGPGGKVITKIIDETGVKIDIEQTGEVFISGI 600 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I+ A++ I I EV ++YKG+V ++++FGAFV ++GL+HIS ++ ERV Sbjct: 601 DQEMIDLAQKKISDIVAEVEVGQVYKGKVTRILNFGAFVELLPGKEGLLHISHIAHERVN 660 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DV+ GD V VK+ + D++G++ +S K + Sbjct: 661 KVEDVLNIGDEVEVKVTEIDEKGRVNVSRKAL 692 >gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 750 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 313/697 (44%), Positives = 455/697 (65%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F + G+ + +ETGR+A Q+DGAV G TVVL TV + L+ FFPL Sbjct: 4 LFGAKRLTATVGGKEIIMETGRLANQADGAVWIQCGGTVVLCTVCT-QPLEREISFFPLV 62 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+Y E+ YA G+IPG + RRE RP+E E L+SR+IDR +RPLF K + NE Q++ NV+ Sbjct: 63 VDYTEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVIS 122 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 D E+ V+++ +SAA+MLS +PFE PV GA+V I+G++VLNP + E + L+L V Sbjct: 123 ADQENDSDVLALCGSSAAVMLSSVPFEAPVAGARVCRIDGEFVLNPTITEAAKADLNLVV 182 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 + +DA++MVE EA+ + E+V+ A+ + H E +P+I+ KL ++ K I + ++ Sbjct: 183 AANRDALVMVEGEADFVPEEVIAQALEWAHREVQPIIDMQEKLRELAGKAKIEFVAPEED 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++L+E+ + DL + + EK R + +K+K+ + + + E ++ D Sbjct: 243 TELKEKAEALATADLAAALQVREKMARKEAKKAVKEKVKAALLQDPAFAETPERLAALGD 302 Query: 298 I----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 I + ++VR +L + +R+DGRD++TVR I + G L R HGS++F RG+T+++VV T Sbjct: 303 ILSSLEKRIVRQRILKEGLRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTT 362 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ DEQ +DSL+G FM+HYNF P + GEV + SRREIGHG LA RA+ PVL Sbjct: 363 LGSTTDEQRMDSLTGDVTKRFMLHYNFPPYSVGEVKPVRV-SRREIGHGALAERALRPVL 421 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FP+TLR+VSE ES+GSSSMA VCG SL+LMDAGVP+ PVAGIAMGL+K+ D F Sbjct: 422 PSPDSFPFTLRVVSETMESNGSSSMAAVCGGSLSLMDAGVPVKAPVAGIAMGLIKEDDQF 481 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 I+L+DI GDED LG MDFK+AGT G+TA+QMD+KI G+ +M AL QA+ RLHILN Sbjct: 482 IVLTDILGDEDALGDMDFKIAGTAEGVTAVQMDIKIDGLPAEVMGRALAQAREARLHILN 541 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM+KVL E R L ++ P++ ++ + P+ IR +IG GGK I+ I TGA ++I+D G + Sbjct: 542 EMAKVLPEPRQALSKYAPQLSVVEVNPEIIRVIIGPGGKNIKAITSATGASIDIEDSGRI 601 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + ++ AREM+ PE+ K Y +V K+M+ GA V + L+HISQL Sbjct: 602 SIFAPTKESMDMAREMVMYYDQRPELGKNYTAKVRKIMEIGAIVEILPNCEALIHISQLD 661 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 T RV KT DVV+ G V VK+++ +D G+++ S K V Sbjct: 662 TSRVEKTEDVVQLGQDVEVKVIEIND-GRVRASRKAV 697 >gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1] gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1] Length = 741 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 309/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ +LETG +A+Q+ G+V+ T G+T VL T V + KD DFFPLTV++ E+ Y Sbjct: 8 FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVG+IPGGYL+RE+RP++ L +RM+DR IRP F+ +K E V+ + D + P Sbjct: 67 AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + ++ ASAALML PF+GP ++ D G++++NP +E + S L+L ++GT D + Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240 MVE A+++SE+ +L A+ FG EA + EP+ V D ++ Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299 M++M LR + +K R ++++LK ++ FS E + +G+I + + ++ Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K +R ++++ R DGR E +R + G L R HGS LF RG TQA+ V TLG + Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ + +M YNF P TGE RMGAP RREIGHG LA RA+ PVLP +F Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI PV+GIAMGL+K+GDD +ILSDI Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKV GT GITA+QMD K G+S +I+ AL+QA GR +IL+ M + + Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+ Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EAA+ MI I PEV + + G+VV + DFGAFV +DGL+HIS+++ RV K Sbjct: 602 GPAGEAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685 DV+ GD + V++L+ D + GKI L Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688 >gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 756 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 307/697 (44%), Positives = 459/697 (65%), Gaps = 10/697 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ V G+ + LETGR+A Q+ GAV G TVVL T + L+ FFPLT Sbjct: 4 VFNATRVSAVVGGKEIILETGRLANQAHGAVWVQCGGTVVLVTACT-QPLERDMGFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+Y E+ YA G+IPG + RRE RP+E E L+SR+IDR +RPLF+K +++E Q++ NV+ Sbjct: 63 VDYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVIS 122 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D E+ V+++ ASAAL +S +PFEGPV GA++ +NG++VLNP + E + S L + + Sbjct: 123 ADQENDSDVLAVTGASAALSISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLAIVI 182 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237 + ++D+V+MVE EA+ + EDV++ A+ + H E +P+I+A KL ++ K + + + Sbjct: 183 AASRDSVVMVEGEAHFVPEDVIVAALEWAHKEIQPLIDAQLKLMELVGKAKMAVTPPVEN 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEG-EIVS 293 ++L+ ++++ +L + IPEK R +K+K++ ++ + + N G E+ Sbjct: 243 AELKARVAELATTELDAALRIPEKMARKDARKAVKEKVLEALLADPALAENANLGREVGD 302 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++ +VR +L + R+DGRD++TVR I + GLL R HGS+LF RG+T+++VV T Sbjct: 303 MLGSLEKVLVRRRILKEGTRIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVAT 362 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ D Q +DSL G FM+HYNF P + GEV +M SRREIGHG LA +A+ PVL Sbjct: 363 LGSSTDSQRMDSLVGDVTKKFMLHYNFPPYSVGEV-KMSRVSRREIGHGALAEKALKPVL 421 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 PQ FP+TLR+V+E ES+GSSSMA VCG SL+LMDAGVP++ PVAG+AMGL+K+ ++ Sbjct: 422 PQDDSFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVTAPVAGVAMGLIKEEGEY 481 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ++L+DI GDED LG MDFK+AGT GITA+QMD+KI G+ ++M A+ QA+ RLHIL Sbjct: 482 LVLTDILGDEDALGDMDFKIAGTAEGITAVQMDIKITGLPTDVMARAMAQAREARLHILA 541 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 EM+KVL R +L ++ P+ + + PD IR +IG GGK I+ I TGA ++I+D G V Sbjct: 542 EMAKVLEAPRTELSKYAPQHAEVFVNPDVIRIIIGPGGKNIKAITAATGASIDIEDSGKV 601 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + +E AREM++ E+ K Y G+V KV++ GA V + LVHISQL Sbjct: 602 SIFAPTYEAMEMAREMVQYYDQRAELGKNYVGKVRKVLEIGAIVEILPNLEALVHISQLD 661 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 T RV + DV + G+ + VK+++ + +I+ S K V Sbjct: 662 TNRVEQAGDVARLGEDMTVKVIEING-DRIRASRKAV 697 >gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 747 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/699 (43%), Positives = 454/699 (64%), Gaps = 13/699 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ V + G+ + E GR+A Q+ GAV G TVVL TV + L+ + FFPLT Sbjct: 5 IFNPTRVTAQVGGKEVIFECGRLANQAHGAVWMQCGGTVVLVTVC-SQPLEFDKGFFPLT 63 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V Y E+ YA G+IPG + RRE RP+E E L+SR+IDR IRPLF K + QV+ +V+ Sbjct: 64 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 D E+ V+++ ASAALM+S LPFEGPV G ++ +NGQ+VLNP ++ Q L++ Sbjct: 124 ADQENESDVLALTGASAALMVSPLPFEGPVAGGRIGRVNGQFVLNPSFEQQAQSDLNILF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDF 237 + ++DA+ MVE +A LSEDV+++A+ +G E +P+I+A +L ++C K + +D Sbjct: 184 AASRDALTMVEGDARFLSEDVIIEALDWGRKEIQPLIDAQLQLRELCGKAKMAFTPHEDD 243 Query: 238 SKLEEEMSQMIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291 L + ++ +E + + +P+K R +K K++ ++ +W E E + Sbjct: 244 PALLARVHELAREAGIEDALRVPDKLERKDARKAVKGKVMEALKAD-PAWAENEAALKSV 302 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + D++ K+VR ++++ R+DGRD+++VR I Q G+L R HGS+LF RG+T+++V+ Sbjct: 303 GDIIGDLEKKLVRARIVNEGTRIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVI 362 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG+ DEQ +DSL+G FM+HYNF P GEV + SRREIGHG LA +++ P Sbjct: 363 ATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPYCVGEVKPVRV-SRREIGHGALAEKSLRP 421 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP A FP+TLR+V+E ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+K+G+ Sbjct: 422 ILPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGE 481 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 FI+L+DI GDED LG MDFK+AGT G+T +QMD+KI G++ +IM A++QA+ GRLHI Sbjct: 482 KFIVLTDILGDEDALGDMDFKIAGTADGVTGVQMDIKITGLTTDIMRAAMRQAREGRLHI 541 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM++ ++E R +L F P+ + + PD IR +IG GGK I+ I TGA V+I+D G Sbjct: 542 LAEMARAIAEPRKELSRFAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSG 601 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I + + +E AREM+ P++ K Y +V KVM+ GA V + LVH+SQ Sbjct: 602 RVSIFAPTAEALEKAREMVAYYDQRPDLGKNYLAKVRKVMEIGAIVEVLPNVEALVHVSQ 661 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 L RV + DV + G+ + VK+++ + +I+ S K V Sbjct: 662 LDVNRVEQPGDVARLGEDMLVKVIEING-DRIRASRKAV 699 >gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. 1_3_56FAA] gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. 1_3_56FAA] Length = 741 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 308/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ +LETG +A+Q+ G+V+ T G+T VL T V + KD DFFPLTV++ E+ Y Sbjct: 8 FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVG+IPGGYL+RE+RP++ L +RM+DR IRP F+ +K E V+ + D + P Sbjct: 67 AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + ++ ASAALML PF+GP ++ D G++++NP +E + S L+L ++GT D + Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240 MVE A+++SE+ +L A+ FG EA + EP+ V D ++ Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299 M++M LR + +K R ++++LK ++ FS E + +G+I + + ++ Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K +R ++++ R DGR E +R + G L R HGS LF RG TQA+ V TLG + Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ + +M YNF P TGE RMGAP RREIGHG LA RA+ PVLP +F Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI PV+GIAMGL+K+GDD +ILSDI Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKV GT GITA+QMD K G+S +I+ AL+QA GR +IL+ M + + Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+ Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +AA+ MI I PEV + + G+VV + DFGAFV +DGL+HIS+++ RV K Sbjct: 602 GPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685 DV+ GD + V++L+ D + GKI L Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688 >gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM 2243] gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM 2243] Length = 741 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 308/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ +LETG +A+Q+ G+V+ T G+T VL T V + KD DFFPLTV++ E+ Y Sbjct: 8 FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVG+IPGGYL+RE+RP++ L +RM+DR IRP F+ +K E V+ + D + P Sbjct: 67 AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + ++ ASAALML PF+GP ++ D G++++NP +E + S L+L ++GT D + Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240 MVE A+++SE+ +L A+ FG EA + EP+ V D ++ Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299 M++M LR + +K R ++++LK ++ FS E + +G+I + + ++ Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K +R ++++ R DGR E +R + G L R HGS LF RG TQA+ V TLG + Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D++ + +M YNF P TGE RMGAP RREIGHG LA RA+ PVLP +F Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI PV+GIAMGL+K+GDD +ILSDI Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED LG MDFKV GT GITA+QMD K G+S +I+ AL+QA GR +IL+ M + + Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+ Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +AA+ MI I PEV + + G+VV + DFGAFV +DGL+HIS+++ RV K Sbjct: 602 GPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661 Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685 DV+ GD + V++L+ D + GKI L Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688 >gi|281492468|ref|YP_003354448.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376132|gb|ADA65623.1| Polyribonucleotide nucleotidyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 773 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 294/695 (42%), Positives = 444/695 (63%), Gaps = 11/695 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T IE+AGR L +ETG++A+Q++GAV+ YG+T VL + + G DFFPL VNY+ Sbjct: 4 ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 62 EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S V +M +S AL +S +PF+GP+ G +V YI+G+Y++NP + E + S L+L V+G + Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297 E+ DL+ + I EK R +K+ ++S +S+++ + I+ + E Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355 ++ VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ + Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ R +L P+++ + IP D+I+ VIG GG+ I I+ +TG K++IDD+G I Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS A I+ A+E+I + +V +IY +VV++ FGAFV+ G +D +VHIS+++ Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWS 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R DVVK GDTV VK++ DD+G++ SM+ + Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696 >gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase/polyadenylase [Deinococcus geothermalis DSM 11300] gi|122986710|sp|Q1J1D0|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis DSM 11300] Length = 721 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/681 (45%), Positives = 439/681 (64%), Gaps = 10/681 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR L +ETG++A+ + G+V YG+T++L T R + DF PLTV ++ER YAVG+ Sbjct: 12 GRELSIETGKLAKLASGSVTLRYGDTLLLVTA-QAREERSTLDFLPLTVEFEERHYAVGR 70 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE RP E+ IL +R+ DR IRPLF K Y+ ETQVII V+ D +++P V+ + Sbjct: 71 IPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDVLGAI 130 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 ASAAL LS +P+ GP +V I+G+YV+NP D+ + SLDL V+GT+DAV MVE Sbjct: 131 GASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTRDAVNMVEAG 190 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 A +SE+ ++ AI F H E + V++ I + +E ++DS + L E+S+ + Sbjct: 191 AQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFLVDSDLSTDLVPELSEAAR 250 Query: 250 E-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV----SVFEDIQAKVVR 304 LR + +K R + L+ ++++ + + E + + F ++ + +R Sbjct: 251 AAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAFAKVEKQELR 310 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++L + +R DGR+S+TVR I + L R HGS++F RG+TQ + V TLGT DE VD Sbjct: 311 RLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVD 370 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L+G + F++HYNF P +TGEV R+G SRRE+GHG LA+RAI VLP FPY +R Sbjct: 371 NLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPAFDDFPYVIR 430 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +V E+ ES+GSSSMATVC +L+LMDAGVPI PVAG+AMGLV +G+ + IL+DI G ED Sbjct: 431 VVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRILTDILGLED 490 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFKV GT G+TA+QMD+K+ G++ IM AL QA+ RLHIL +M++VL R Sbjct: 491 ALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKMAEVLPAPRP 550 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L PR+ + I P+ I VIG GGK +R + E GA+V I++DG ++I S+ A E Sbjct: 551 ELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRIFSADGAAAE 609 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A R+ I +T +V + Y+G VVK FGAFV+ +DG++HISQ+S RV DV+ Sbjct: 610 AVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENRVNAVEDVL 669 Query: 665 KEGDTVWVKLLDFDDRGKIKL 685 GD + VK+ + DDRGKI L Sbjct: 670 NVGDRLRVKIANIDDRGKIDL 690 >gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus UQM 2246] Length = 749 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 308/691 (44%), Positives = 440/691 (63%), Gaps = 11/691 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE E+ GR L LETG+ A+Q+ GAVL TYGET VL V + S G+DFFPL V Y+ER Sbjct: 8 VECEFGGRTLVLETGKFAKQAHGAVLVTYGETSVLVAAV-EGSPIPGRDFFPLQVEYRER 66 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GK PGG+++RE+RP+ E L SR+IDR RPLF Y NE Q+ V+ D E+ Sbjct: 67 TYAAGKFPGGFIKRETRPSTKETLTSRLIDRPSRPLFPANYFNEVQIHCTVISSDRENDA 126 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 +++++ SAAL +S +PF P G ++ +NG+ V+ P + + ++ LDL V+ T+DAV Sbjct: 127 DMLALIGTSAALHVSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEESDLDLIVAATRDAV 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL---AKMCAKEPIVIDSKDFSKLEE 242 M+E A ++ E+ + DAI+ H +C +I+ I +L A + K ++ + + L E Sbjct: 187 CMIEGFAREMPENEMGDAIMEAHKQCAVLIDLIERLRTEAGLGTK--VLPPATADNPLLE 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFEDIQ 299 E+ Q R K R +D K ++ + E + ++ ++ ++ Sbjct: 245 ELHQKYGAQYREKYLTQGKKERNAALDAFKDEIKKVYLPEGEANPAYTPSQVSGALSALR 304 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++ R + L R+DGR + +R + A+V +L RTHG++LF RG+TQA+VV TLGT D Sbjct: 305 ERIFREITLGG-TRIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVAD 363 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 EQ VD L F + YNF P + GE + AP RREIGHG LA R++ V+P ++F Sbjct: 364 EQKVDGLQDEYSKKFFLDYNFPPYSVGECKPIRAPGRREIGHGMLAERSLKAVIPPPSRF 423 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEI ES+GSSSMA+VCG +LALMDAGVPI +PVAGI++GLV + D F +L+DI Sbjct: 424 PYTIRLVSEILESNGSSSMASVCGGTLALMDAGVPIKRPVAGISVGLVMEKDHFSLLTDI 483 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDH G MDFKVAGT G+T +Q+D+K+ GI+E I+ AL+QAK RL IL M L Sbjct: 484 QGDEDHYGDMDFKVAGTQKGVTGVQLDIKVDGINEAIVRGALEQAKEARLQILKTMLSAL 543 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S R ++ + PR+ + I P+ I +IG GGK+IR I E+TGAK++I+DDGTV IASS Sbjct: 544 SAPRKEISRWAPRLIQLKINPEMIGKLIGPGGKMIRAIQEETGAKIDIEDDGTVSIASSD 603 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +EAAR M+ +T +V +Y G+VV + DFGAFV RDGL H+S+L + V + Sbjct: 604 AEGVEAARRMVEGLTAEVKVGAVYDGKVVSMKDFGAFVEIAPGRDGLCHVSELDSGFVQR 663 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVV+ G + VK++ DD G+++LS K + Sbjct: 664 PEDVVEIGQKIQVKVIGIDDNGRVRLSRKAL 694 >gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans M341] gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans M341] Length = 695 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 313/680 (46%), Positives = 455/680 (66%), Gaps = 7/680 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 +WAG+ L +E G +ARQ++ AV+ YG+TVVL T V + KD DFFPLTVNY+E+ YA Sbjct: 11 QWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+LRRE RP L +R+IDR IRPLF ++NE QVI V+ + + P + Sbjct: 70 VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S +L +S +PF+GP+ G V Y++G+YV+NP +++ ++ ++DL V+GT DA+ MV Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTIDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247 E A ++SE+++L+AI+FGH E K +I ++ +E + ++ K + + +E+ M Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMAVELKVIDETIYKEVLSM 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303 ++ + I +K R + I +K+K++ F + + +E +IV + I V Sbjct: 250 ALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEEKATDEDELDIVKEAKLSLDKIVKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + + K+R DGR +R ++++V +L RTHGS+LF RG TQ++ VVTLG DEQ + Sbjct: 310 RREITEDKIRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM+HYNF + GEV AP RREIGHG L RA+ V+P FPYT+ Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEI ES+GSSS AT+C S+ALM AGVPI VAGIAMGLVK + + IL+DI G E Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI G+SE I+ +L+QA+ GRL IL M+ ++SE R Sbjct: 490 DHLGDMDFKVAGTSEGITALQMDIKIDGLSEQILKESLEQARVGRLQILEHMNSIISEPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 ++ F P+++I+ I P++I++VIG GGKVI I+E+TG K++I+ +G V I+S + I Sbjct: 550 QEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDVFISSPEIEGI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A E+I +IT EV +IY +V ++ FGAFV D LVHIS+L+ ERV K DV Sbjct: 610 NKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLAEERVNKVEDV 669 Query: 664 VKEGDTVWVKLLDFDDRGKI 683 VK GDT+ VK++ D++G++ Sbjct: 670 VKVGDTLKVKVIKIDEKGRV 689 >gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 700 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 311/692 (44%), Positives = 453/692 (65%), Gaps = 10/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + V++ P+ ETG A+Q++G++ G +VVL T V + + DFFPLTVNY Sbjct: 8 YEVKLTEDSEPIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYI 67 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YAVGKIPGG+++RE +P++ E LISR+IDR IRPLF + ++NETQ+I V+ D + Sbjct: 68 EKFYAVGKIPGGFIKREGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATVVSSDQVN 127 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183 S ++++ AASAALM+S +PFEGP+ +V ING+YV+NP D +++ V+GT+D Sbjct: 128 STDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEMNIVVAGTED 187 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 +++MVE SE+ V++A+ FGH K ++E ++ KE + DFS E++ Sbjct: 188 SIVMVEAGMKNCSEEDVVNALEFGHEAIKKLVEVQKRMRDEIGKEKF--EYMDFSVSEDD 245 Query: 244 MSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFED 297 ++++ I + L+ + IP K + + ID +K++ E N+G ++++ Sbjct: 246 LNKLYDEIGDKLKEAVLIPGKLEKYEAIDKVKEEYFEKLKEELGDEFEENKGYYNELYQE 305 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ KV R + L+ R+DGR +R I +V LL HGS+LF RG+TQA+V TLGT+ Sbjct: 306 VEKKVFRDITLNSGKRVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTK 365 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L G FM+HYNF P + GE+ + AP RREIGHG LA RA+ +LP Sbjct: 366 FDSQLLDDLEGETYKRFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALASMLPGED 425 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIIL 476 +FPYT+R+VSEI ES+GSSSMATVCG SLALMDAGVPI VAGIAMGL+ +GDD ++IL Sbjct: 426 EFPYTIRVVSEILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGDDNYVIL 485 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G EDHLG MDFKV GT++GITA+QMD+KI G+ I+ AL QAK GRL IL +M Sbjct: 486 SDIMGIEDHLGDMDFKVTGTETGITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMK 545 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 VL++ R ++ PR + I P+++ +IG GK I+ I+++TG K++I ++G + I Sbjct: 546 AVLAKPREEVSPKAPRFVKVKINPEKVGLLIGPAGKTIKSIIDKTGVKIDILEEGELHIF 605 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ I++A EMI ++T V KIY +V +V+D+GAFV +GL+H+SQ S ER Sbjct: 606 GNNKEAIDSAIEMIEAVTQELTVGKIYNAKVKRVVDYGAFVELFPGVEGLLHVSQFSKER 665 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + D VK GD++ V+ L DD+G+IKLS K Sbjct: 666 IENIRDHVKVGDSLDVEYLGKDDQGRIKLSRK 697 >gi|125624816|ref|YP_001033299.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis subsp. cremoris MG1363] gi|187610279|sp|A2RMS5|PNP_LACLM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|124493624|emb|CAL98611.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071615|gb|ADJ61015.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 766 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 291/695 (41%), Positives = 446/695 (64%), Gaps = 11/695 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T IE+AGR L +ETG++A+Q++GAV+ YG+T VL + + G DFFPL VNY+ Sbjct: 4 ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 62 EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S V +M +S AL +S +PF+GP+ G +V YI+G+Y++NP + E + S L+L V+G + Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNIN 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297 E+ DL+ + + EK R +K+ ++S +S+++ + I+ + E Sbjct: 242 EVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355 ++ VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLA 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ + Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ R +L P+++ + IP D+I+ VIG GG+ I I+ +TG K++IDD+G I Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS + I+ A+E+I + +V ++Y+ +VV++ FGAFV+ G +D +VHIS+++ Sbjct: 602 FSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R AK DV+K GD V VK++ DD+G++ SM+ + Sbjct: 662 RTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRAL 696 >gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix DSM 17093] gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix DSM 17093] Length = 726 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 310/683 (45%), Positives = 434/683 (63%), Gaps = 12/683 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L +ETG+ A+ G+V YG+TVVL T + D DF PLTV Y+ER YA+G Sbjct: 14 GGRELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTAAD-TDFLPLTVEYEERHYAIG 72 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPG + RRE RP L +R+ DR IRPLF K +NE QVII V+ D E+ P +++ Sbjct: 73 KIPGSFQRREGRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADRENDPAMIAA 132 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 + ASAAL +S +P++GP V Y++GQYVL P L S L+L V+ ++DAVLMVE Sbjct: 133 IGASAALSISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQLELTVAASEDAVLMVEA 192 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250 A++L ED ++ AI F E + VIE I ++ +E + ++ S EE+ ++ +E Sbjct: 193 SADELPEDTMVGAITFAQREMQGVIELIKRMRAEIGQEKLPVEPP-LSPSEEDKERLYQE 251 Query: 251 ----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303 L+ P K R + L+ ++S E ++ + V++ ++ A V Sbjct: 252 AVAAGLKEVLLTPSKKERSAKTKALRDALISKHVPEVANEEDARRVALLKEAFASAVQRE 311 Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++L++ +R DGR E +R I +VG+L +THGS++F RG+TQ + V TLGT +D++ Sbjct: 312 SRRMILEEDLRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGTGKDDRL 371 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L FM+HYNF P +TGEV R+ SRRE+GHG LARRA+ ++P F Y Sbjct: 372 IDDLGLETSETFMLHYNFPPFSTGEVKRLRGVSRRELGHGNLARRALERMMPSQDTFGYV 431 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+V+E ES+GSSSMA+VC ++L++MDAGVP+ KPVAGIAMGL+K+GD + ILSDI G Sbjct: 432 VRVVAETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDTYKILSDILGS 491 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKV GT G+TA+QMD+KI GI+ IM AL+QA+ GR HILN M +VLS Sbjct: 492 EDALGDMDFKVTGTHDGVTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMDEVLSAP 551 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R ++ + PR+ + IP D+I VIG GGK IR + E G +++I++ G VKI S + Sbjct: 552 RSEVSKNAPRILTVQIPVDKIGAVIGPGGKQIREL-EALGVQIDIEESGLVKIYSEEASA 610 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 EA RE I ++T PEV K Y G+V K+ +FGAFV DGL+HISQ++ ERV D Sbjct: 611 AEAVREQIEALTATPEVGKTYDGRVAKITEFGAFVTLFPGTDGLLHISQIAEERVHNIED 670 Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685 +K GDT+ VK+ D RGK+ L Sbjct: 671 YLKVGDTLKVKIAGIDSRGKLDL 693 >gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase/polyadenylase [Candidatus Protochlamydia amoebophila UWE25] gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 702 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 443/697 (63%), Gaps = 12/697 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T+ + + + ETG+IARQ+ GAV+ GETVV T + DF PL V+YQ Sbjct: 9 ETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQ 68 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ + GK GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++ V +D + Sbjct: 69 EKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGIN 128 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183 SP +++ ASAAL++S +P PV ++ +I+ Q+++NP +++ Q LDL ++GT++ Sbjct: 129 SPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEE 188 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKEPIVIDSKD-FS 238 AVLM+E + L+ED VL+AI GH K + + + +K+ K +E + K+ ++ Sbjct: 189 AVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYA 248 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFE 296 +E + ++++ LR+ EK R + + ++ K + +E + I V + Sbjct: 249 DVESIANPLLEKALRIC----EKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIK 304 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D+ +K++R ++L++ VR DGR S +R I + LL R HGSSLF RG+TQA+ V TLG Sbjct: 305 DVSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGG 364 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q + L G N F + Y+F P + GEV R+GAP RREIGHG+LA RA+ V+P Sbjct: 365 ASMAQRFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTK 424 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R+ S ITES+GSSSMATVCG LALMDAGV I +PVAGIAMGL+ + + FIIL Sbjct: 425 EQFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIIL 484 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G ED LG MDFKV G +GITA QMD+K+ GI+ IM +AL+QAK GR+HILN+M Sbjct: 485 SDILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKML 544 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V + ++ + PR+E + I P +I VIG GGK IR I+EQTG +++IDD G V IA Sbjct: 545 AVCPTYKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIA 604 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + L IE A+ +I +T E+ +IY G+ + + FG FV ++GL HIS+ R Sbjct: 605 AIDLVSIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNR 664 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 + + VK+GD + VK+LD ++RG+IKLS K Q+ Sbjct: 665 INSLDEFVKQGDMLMVKVLDINERGQIKLSRKATLQS 701 >gi|187610325|sp|Q6MDI2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 697 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 304/697 (43%), Positives = 443/697 (63%), Gaps = 12/697 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T+ + + + ETG+IARQ+ GAV+ GETVV T + DF PL V+YQ Sbjct: 4 ETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ + GK GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++ V +D + Sbjct: 64 EKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGIN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183 SP +++ ASAAL++S +P PV ++ +I+ Q+++NP +++ Q LDL ++GT++ Sbjct: 124 SPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEE 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKEPIVIDSKD-FS 238 AVLM+E + L+ED VL+AI GH K + + + +K+ K +E + K+ ++ Sbjct: 184 AVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYA 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFE 296 +E + ++++ LR+ EK R + + ++ K + +E + I V + Sbjct: 244 DVESIANPLLEKALRIC----EKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIK 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D+ +K++R ++L++ VR DGR S +R I + LL R HGSSLF RG+TQA+ V TLG Sbjct: 300 DVSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGG 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q + L G N F + Y+F P + GEV R+GAP RREIGHG+LA RA+ V+P Sbjct: 360 ASMAQRFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTK 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 QFPYT+R+ S ITES+GSSSMATVCG LALMDAGV I +PVAGIAMGL+ + + FIIL Sbjct: 420 EQFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIIL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G ED LG MDFKV G +GITA QMD+K+ GI+ IM +AL+QAK GR+HILN+M Sbjct: 480 SDILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKML 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V + ++ + PR+E + I P +I VIG GGK IR I+EQTG +++IDD G V IA Sbjct: 540 AVCPTYKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + L IE A+ +I +T E+ +IY G+ + + FG FV ++GL HIS+ R Sbjct: 600 AIDLVSIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 + + VK+GD + VK+LD ++RG+IKLS K Q+ Sbjct: 660 INSLDEFVKQGDMLMVKVLDINERGQIKLSRKATLQS 696 >gi|116512733|ref|YP_811640.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis subsp. cremoris SK11] gi|123320193|sp|Q02WZ5|PNP_LACLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116108387|gb|ABJ73527.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Lactococcus lactis subsp. cremoris SK11] Length = 769 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 292/695 (42%), Positives = 446/695 (64%), Gaps = 11/695 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T IE+AGR L +ETG++A+Q++GAV+ YG+T VL + + G DFFPL VNY+ Sbjct: 4 ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 62 EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S V +M +S AL +S +PF+GP+ G +V YI+G+YV+NP + E + SL+L V+G + Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYVINPTVAEKESSSLELSVAGNIN 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297 E+ DL+ + + EK R +K+ ++S +S+++ + I+ + E Sbjct: 242 EVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355 ++ VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLA 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ + Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ R +L P+++ + IP D+I+ VIG GG+ I I+ +TG K++IDD+G I Sbjct: 542 EATIAQPREELAPSAPKIDTIMIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS + I+ A+E+I + +V ++Y+ +VV++ FGAFV+ G +D +VHIS+++ Sbjct: 602 FSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R AK DV+K GD V VK++ DD+G++ SM+ + Sbjct: 662 RTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRAL 696 >gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 733 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 298/695 (42%), Positives = 456/695 (65%), Gaps = 8/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ T E GR L +E GR+A Q++GAV YG+TVVL T V + + G DF PLT Sbjct: 1 MPEIKTFERTIGGRNLVIENGRMAGQANGAVTVRYGDTVVLVTAVIAKEPRPGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++ +ER YA G+IPGG++RRE RP+E L +R+ DR +RPL K ++ E Q+I+ V+ Sbjct: 61 IDVEERMYAAGRIPGGFIRREGRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTA 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P V+ ++ AS AL +S +PF+GP+ +V +I+G++V+NP + + +LD+ V+ Sbjct: 121 DQENDPDVLGVIGASCALGISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENSTLDVVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 T+ AV M+E AN+ ED++ +AI FGH + +I ++ K I++ + Sbjct: 181 STRSAVTMLEAGANEAPEDLMFEAIRFGHQANQEIIAIQDEIIAAVGKAKWTIEAPVVNP 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +L +++S +I L + + +K R + +D +K +++ + + ++ G+I++ ++ Sbjct: 241 ELMDKVSSIIDGKLAEAFYQADKARRQENLDKVKAELLEALNEDE--YDSGDIMAAWDKK 298 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++VR+ +LDKK R+ GR E +R++SA+VG+L R HGS+LF RG TQ + VVTLG+ + Sbjct: 299 IRQLVRSTILDKKERVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQ 358 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 EQ +D++S ++ HYNF P + GE R+G RREIGHG LA RA+ PV+P A+ Sbjct: 359 MEQKLDNISPETSKRYIHHYNFPPYSVGETKRIGT-GRREIGHGALAERALLPVVPSEAE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFII 475 FPY LR+VSE S+GS+SMA+ C SSL+LMDAGVPI KPVAGI++GL+ D D F+ Sbjct: 418 FPYALRLVSEAVSSNGSTSMASACASSLSLMDAGVPIKKPVAGISIGLITDDTNPDRFVT 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED+ G MDFKVAGT GITA+Q+DMK+ GI+ ++ L QA+R R IL M Sbjct: 478 LTDIEGLEDNYGDMDFKVAGTRDGITAIQLDMKLKGITFAVIEQTLAQARRAREVILEVM 537 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K +++SR +L + PR+ + I P +I VIG GG+VIR I+E+T ++I+DDGTV I Sbjct: 538 NKAIAQSRAELSPYAPRMYKLKIDPGKIGAVIGPGGRVIRSIIEETKTTIDIEDDGTVII 597 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +S + A +I +T E + IY G+V ++M FGAFV ++G+VHIS+L+ Sbjct: 598 GASDGESAKKAIAIIEGMTKDIEPDSIYTGKVSRIMSFGAFVEILPGKEGMVHISELANR 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV K DV+K GDTV VK+++ D +G+I LS++ + Sbjct: 658 RVDKVEDVLKIGDTVTVKVIEIDSQGRINLSIRAL 692 >gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium azorense Az-Fu1] gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 707 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 300/694 (43%), Positives = 449/694 (64%), Gaps = 13/694 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V+ E G P +ETG A+Q++GAV+ G+T VL V + DF PLTV Y+E+ Sbjct: 8 VQTEVNGAPFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREK 67 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+++RE +PT+ EIL++R IDR IRPLF K + N+ + + D + P Sbjct: 68 YYAYGKIPGGFVKREGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSADDKYDP 127 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185 V+ +V ASAAL +S +PFEGP+ G +V +NG++++NP + Q +++ V+G++DA+ Sbjct: 128 DVLGIVGASAALHISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADIEIVVAGSKDAI 187 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF---SKL 240 +MVE A ++ E+ +L+A++FGH E K +IE +L C KE I ID ++ KL Sbjct: 188 VMVEGGAKEVPEEDILEAMMFGHQEIKKLIELQEELRLKCGKEKIQVAIDEEEIILKDKL 247 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 +E + IKE +++ +K R K I+ + ++ + + ++DI + Sbjct: 248 KEFSYEKIKEAFKIT----DKKQRNKTINAIFEEAFKTLEIPEEKIKKASFI--YKDIVS 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 V+R +L++ +R+DGR E +R I +VG+ R HGS++F RG TQA V VTLG+ + Sbjct: 302 NVMRDNILNEGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEG 361 Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +S+ +G FM+HYNF P +TGE A SRREIGHG LA RA+ P++P +F Sbjct: 362 QIEESIEAGEVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPLIPPEEEF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K D F+ILSDI Sbjct: 422 PYAIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT G+T++QMD+K+ G+++ I+ ALQQA+ GR +IL+ M + + Sbjct: 482 LGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTKEILEKALQQARDGRNYILDLMYQAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E R ++ + P V + + PD+I +IG GK I+ I+E+T K+++D +G VKI ++S Sbjct: 542 PEPRKEVSPYAPTVTTLRVLPDKIPIIIGPAGKNIKKIIEETKVKIDLDPEGLVKIYATS 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E A MI + EV ++Y G+V +V D+GAFV R L+H+SQ++ ER+ Sbjct: 602 KEAAEKAVSMINELILDVEVGEVYMGKVTRVEDYGAFVELLPGRLSLLHVSQITGERLKS 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 + +K GD + VK+ + DD+G+IK+S+K V +N Sbjct: 662 AKEKIKVGDVLKVKVSEIDDQGRIKVSLKDVPEN 695 >gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio salexigens DSM 2638] gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens DSM 2638] Length = 750 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 305/684 (44%), Positives = 444/684 (64%), Gaps = 17/684 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVGKIP 74 + LETGR+A Q++G VL G TVVL T V + DG +DFFPLT NY ERTYA G+IP Sbjct: 19 ITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPA--DGPRDFFPLTCNYLERTYAAGRIP 76 Query: 75 GGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 GGY RRE RP++ E L+SR++DR IRP+F K Y++E QVI V+ D +++P V++M Sbjct: 77 GGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSADTDTNPDVLAMTG 136 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAVLMVELE 191 ASAAL +S LPF GPV A+V ++ ++VL P +Q L+L + T+DAV+MVE Sbjct: 137 ASAALHISDLPFNGPVAAARVGLVDNEFVLYPTYKGVAEQSDLNLVFAATRDAVIMVEGS 196 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE- 250 + LSE+ + +A+ +GH + P+ + L + + + + + +EE+ ++ E Sbjct: 197 SQFLSENTIAEALEWGHEQMAPMFDLQDALREKVGRPKLEVSEPE---KDEEVITLVTEN 253 Query: 251 ---DLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 DL + IP K R ++K K M+ E + + D++ K+VR Sbjct: 254 FSADLDKALTIPGKLDRKAAKSEVKASAKAMIEEKFPEEPERAKA-VGDAMADLEKKIVR 312 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++++ VR+DGRD TVR++S +V L THGS+LF RG+T A+ V TLG+ DEQ + Sbjct: 313 KRIVEQGVRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLGSTRDEQRFE 372 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L G FM+HYNF P GE + APSRREIGHG LA RA+ PVLP+ FP+T+R Sbjct: 373 TLIGEDTKRFMLHYNFPPYCVGEAKFLRAPSRREIGHGTLAERALRPVLPKAEDFPFTMR 432 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ +S+GSSSMATVCG++L+LMDAGVPIS PVAGIAMGL ++GD++ +L+DI GDED Sbjct: 433 VVSEVMDSNGSSSMATVCGTTLSLMDAGVPISAPVAGIAMGLCQEGDEYFVLTDILGDED 492 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFKVAGT+ GITA+QMD+KI GI +++ AL QAK R IL++M + + E R Sbjct: 493 ALGDMDFKVAGTEEGITAIQMDIKISGIPADVLRRALAQAKDARQIILDDMKETMPEPRA 552 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L P++E++ I P++IR++IG GGK I+ I +T A ++I+D G V I + +L ++ Sbjct: 553 ELSVNAPQMEVLQINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGKVSIFAPTLESLK 612 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 EM++ E+ K Y G V K+++ GA V +GL+HISQ+ ER+A+ +DVV Sbjct: 613 KTVEMVQYYDQTAELGKNYVGTVKKILEIGAIVEILPGLEGLLHISQIDVERIAEVTDVV 672 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 + G + VK+++ G+I+LS K Sbjct: 673 QLGQEITVKVVEVQPNGRIRLSRK 696 >gi|306832712|ref|ZP_07465849.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC 700338] gi|304425168|gb|EFM28297.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC 700338] Length = 727 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E +AGRPL +E G++A+Q++GA + YGE+ +L+ V + + G DFFPL VNY+ Sbjct: 4 QTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RPT + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP + + SL +L V+GT+D Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ +L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ DL+ + + EK R + +K+++++ + ++ E + + E Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 GETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R QL P+++ + I D+I+ VIG GG+ I I+E+TG K++IDD+G V I S Sbjct: 543 TIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS++S R Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ DD+G++ SMK + Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695 >gi|288904442|ref|YP_003429663.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus UCN34] gi|306830475|ref|ZP_07463645.1| polyribonucleotide nucleotidyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977438|ref|YP_004287154.1| polyribonucleotide nucleotidyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731167|emb|CBI12715.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus UCN34] gi|304427500|gb|EFM30602.1| polyribonucleotide nucleotidyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177366|emb|CBZ47410.1| polyribonucleotide nucleotidyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 727 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E +AGRPL +E G++A+Q++GA + YGE+ +L+ V + + G DFFPL VNY+ Sbjct: 4 QTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RPT + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP + + SL +L V+GT+D Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ +L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ DL+ + + EK R + +K+++++ + ++ E + + E Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 GETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R QL P+++ + I D+I+ VIG GG+ I I+E+TG K++IDD+G V I S Sbjct: 543 TIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS++S R Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ DD+G++ SMK + Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695 >gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] Length = 714 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 307/690 (44%), Positives = 444/690 (64%), Gaps = 11/690 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E + AGRPL LE G+ A+Q+ G+VL YG+TVVLAT + DF PLTV ++ Sbjct: 12 HRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEA-DFLPLTVEFE 70 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPG ++RRE RP E IL +RM DR IRPLF K +++E QVI+ V+ D ++ Sbjct: 71 ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKN 130 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++ AASAALMLS +P+EGPV +V I GQ+VLNP L E + +LDL V+G++D Sbjct: 131 PPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESALDLVVAGSRD 190 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEE 242 A+LMVE A ++ E++++ A+ F H E +P+++ ++A+ K + + S+ E+ Sbjct: 191 AILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAWTPPEALSEEEK 250 Query: 243 EMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSVF 295 E + + +S + K R + ++ + +V+ E + +E + S F Sbjct: 251 EAFYRLAVERGLSAVLQTASKGERSRALEAFAEALVAEALPKGEDGTPDESKKPLYESAF 310 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++ K +R ++L++ R DGR + +R I +V +L RTHGS++F RG+TQ + VTLG Sbjct: 311 AEVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLG 370 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D L + F++HYNF P +TGEV R+ SRREIGHG LA+RA+ VLP Sbjct: 371 TGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPP 430 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+R+V ++ ES+GSSSMATVC LALMDAGVP+ PVAG+AMGLV +G+ +I Sbjct: 431 EEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGERAVI 490 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGT G+TA+QMD K+GG+ ++ AL QA+ R+ IL+ M Sbjct: 491 LTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAREARMKILDLM 550 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 VL R +L F PR+ + +P ++I VIG GGK +R + E+ G +V+I++DGTV+I Sbjct: 551 ESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVRI 609 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS + + A++ I +T +V +IY+G V K+ FGAFV +GL+HISQ++ Sbjct: 610 YSSDMEAAQKAKKRIEELTLEAKVGEIYEGTVTKITPFGAFVSLFPGTEGLLHISQIAPG 669 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RV + D +K GD + VK+ D+RGKI L Sbjct: 670 RVERVEDHLKVGDVIKVKVHRIDERGKIDL 699 >gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 741 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 313/693 (45%), Positives = 454/693 (65%), Gaps = 11/693 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E GR L TG +A+Q++GAV A YG+T VL T + ++ DFFPL V+Y+ER Sbjct: 8 EVEIGGRALVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERF 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF + KN+ V+ ++ D + P Sbjct: 68 YAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V+++ AASAAL +S +P++GPV +V YI+G V+NP ++ Q S LDL V+G ++ + Sbjct: 128 VLAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPMEEDMQNSTLDLVVAGHKEGIT 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 MVE A ++ E+V++DA+ E + +++ K+ + K I + + E+ + Sbjct: 188 MVEGGAGEVPEEVLVDALELAQQEIRRLVDFQLKMREEVGKPKCEIPA---PQEVPEIDE 244 Query: 247 MIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 IK D + I K R I +K+K+ F + EG + + K Sbjct: 245 CIKTDHYGEIYEAVKIHAKKERSDAIKAIKEKVWEKFKDTYPE-QEGYVSNAVTKYVKKA 303 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQ 361 +R+++LD+ +R DGR + +R IS +V LL R HGS++F RG+TQA+VV TLG EDEQ Sbjct: 304 MRSLILDEGLRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQ 363 Query: 362 YVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D L + FM+HYNF P + GEV M P RREIGHG LA RA+ P++P +QFP Sbjct: 364 ILDGLKLDEPPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERAVKPLIPDESQFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+VS+I ES+GSSSMA+VCG+S++LMDAGVPI+K VAGIAMGL+K+GD + IL+DI Sbjct: 424 YIIRVVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAILTDIQ 483 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT G+TA+QMD K GGI+ I+V AL QAKRGRL IL+ M K + Sbjct: 484 GLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILVQALDQAKRGRLQILDIMEKAIG 543 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L ++ PR+ M I PD+IR+VIG GGK IR IV++TG K++I DDG V IA+SS Sbjct: 544 RPRGELSQYAPRIYTMNIDPDKIRDVIGPGGKTIRSIVQKTGVKIDIADDGVVHIAASSE 603 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + A +I+S+T E ++Y G+V ++M+FGAF+ ++GL+HIS++S+ V K Sbjct: 604 SAANEAMSIIKSLTKDVEPGEVYIGKVTRLMNFGAFIELLPGKEGLLHISEVSSSHVPKI 663 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D+ K GD V V + + D+ G++ LS K + +N Sbjct: 664 EDIFKVGDRVLVVVKEIDELGRVNLSRKRIMEN 696 >gi|15673837|ref|NP_268012.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis subsp. lactis Il1403] gi|81537531|sp|Q9CEI6|PNP_LACLA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|12724886|gb|AAK05953.1|AE006415_8 polyribonucleotide nucleotidyltransferase [Lactococcus lactis subsp. lactis Il1403] Length = 773 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 293/695 (42%), Positives = 443/695 (63%), Gaps = 11/695 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T IE+AGR L +ETG++A+Q++GAV+ YG+T VL + + G DFFPL VNY+ Sbjct: 4 ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 62 EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S V +M +S AL +S +PF+ P+ G +V YI+G+Y++NP + E + S L+L V+G + Sbjct: 122 SGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297 E+ DL+ + I EK R +K+ ++S +S+++ + I+ + E Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355 ++ VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ + Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ R +L P+++ + IP D+I+ VIG GG+ I I+ +TG K++IDD+G I Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS A I+ A+E+I + +V +IY +VV++ FGAFV+ G +D +VHIS+++ Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R DVVK GDTV VK++ DD+G++ SM+ + Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696 >gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB8] gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8] Length = 713 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 305/691 (44%), Positives = 446/691 (64%), Gaps = 13/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E+ AGRPL LETG+ A+Q+ G+VL Y +TVVLAT + + DF PLTV ++ Sbjct: 11 HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPG ++RRE RP E IL +RM DR IRPLF K +++E Q+I+ V+ D ++ Sbjct: 70 ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++ +AASAALMLS +P+EGP+ +V I G +VLNP L E ++ LDL V+G+++ Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 A+LMVE EA ++ E+ ++ A+ F H E +P++E +A+ AK P + + S EEE Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAK-PKMAWTPPESLPEEE 248 Query: 244 MSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSV 294 + ++ L K R + + + +++++ E + +EG+ S Sbjct: 249 KEALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESA 308 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F+++ + +R ++L++ R DGR + +R I +V +L R HGS++F RG+TQ + VTL Sbjct: 309 FDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTL 368 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT DEQ +D L + F++HYNF P +TGEV R+ SRRE+GHG LA+RA+ V+P Sbjct: 369 GTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + FPYT+R+V ++ ES+GSSSMATVC LALMDAGVPI PVAG+AMGLV + + + Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAV 488 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT G+TA+QMD K+GG+ ++ AL QA+ RL IL+ Sbjct: 489 ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M VL R +L F PR+ + +P ++I VIG GGK +R + E+ G +V+I++DGTV+ Sbjct: 549 MEAVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVR 607 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I SS L A++ I +T +V +IY+G V ++ FGAF+ +GL+HISQ++ Sbjct: 608 IYSSDLQAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAP 667 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RVA+ D +K GD + VK+ D+RGKI L Sbjct: 668 GRVARVEDHLKVGDVIKVKVHRIDERGKIDL 698 >gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] Length = 741 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 308/702 (43%), Positives = 444/702 (63%), Gaps = 22/702 (3%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T IE +GR ++ GR+A Q+ VLA YGETVVL + +L++G DFFPLTV+Y+E Sbjct: 8 TRTIEISGRTFSVDIGRVAGQASAGVLARYGETVVLVAATRE-ALREGLDFFPLTVDYEE 66 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVG+IPG +++RE RP E IL +R+IDRSIRPLF + + + V+ VM D + S Sbjct: 67 RHYAVGRIPGSFMKREGRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDCS 126 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +++ AS AL LS +PF GPV + ++GQ V+NP L++D+ S L L V+GT++A Sbjct: 127 PAITAILGASVALTLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDLHLTVAGTREA 186 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 + MVE A ++SE+++++A+ H E + + E + ++ EP+ + E Sbjct: 187 INMVEAGAKEVSEEIIVEALTKAHAEIQRIAEWVGEI--RAEVEPLGLAHPKIEVPANEP 244 Query: 245 SQMIKEDLRVSCFIPEKYV--RCKQIDDLKKKMVSYFSS----------EHSSWNEGEIV 292 + E +R + + + CK KK + E+ E + Sbjct: 245 GPELVEAVRSAGYEKMRAAVHHCKNERLDKKSADRHLEGTKAEIINAVLENFPEEEQRLK 304 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 S+ + ++ + VR ++L +KVR+DGR + +RDIS +V +L RTHGS LF RG TQ + V+ Sbjct: 305 SLVDKLEKEAVRELVLKEKVRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVL 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG DEQ +D L + FM HYNF +TGE + + RREIGHG LA RA+ V Sbjct: 365 TLGAVRDEQILDGLDTQETKRFMHHYNFPSFSTGEARPIRSAGRREIGHGALAGRALEAV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPYT+RIVSE+ S+GS+SMA+VCGS LALMDAGVPI PVAGIAMGL+K+GD+ Sbjct: 425 LPGEDVFPYTIRIVSEVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI+ I+ A+ QA+ RL+IL Sbjct: 485 VAVLTDIQGTEDHLGDMDFKVAGTEQGVTALQMDIKIAGITPEILAQAMAQAREARLYIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + +V+ R ++ PR+ I P++IR++IG GGK+IR I E TG ++++DDG Sbjct: 545 DRYKEVIPGPRPEISPRAPRIIHTTIDPEKIRDIIGPGGKIIRKITETTGVDIDVEDDGR 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGL 646 V I + + A E+I+++T +V ++Y G+VVK+MDFG FV +DGL Sbjct: 605 VFITAPDPEGGKKALEIIKTLTAEVKVGEVYLGRVVKIMDFGCFVEVIPGVLGLPGKDGL 664 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 VHIS L+ RV K DVV+EGD + VK + FD++G++KLS K Sbjct: 665 VHISHLAHNRVRKVEDVVREGDQILVKAIGFDNQGRLKLSKK 706 >gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas acidaminovorans] gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas acidaminovorans] Length = 743 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 300/706 (42%), Positives = 448/706 (63%), Gaps = 19/706 (2%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F++ E ++ GR L +ETG++A+Q++G+V YGET VL T + + QDFFPLTV Sbjct: 4 FNITRRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTV 63 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y E+ YA GKIPGG+ +RES+P+ + L++R+IDRSIRPLF + ++N+ +++ V+ D Sbjct: 64 DYIEKMYAAGKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLSFD 123 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVS 179 + P + + AS AL +S +PF GP+ V YI+ Q+V+NP +E Q L+L V+ Sbjct: 124 GVTDPSTMGVFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNLTVA 183 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDS--- 234 G++ +++M+E A++LSE+++LDA+ GH E + + C KE + V+DS Sbjct: 184 GSESSIVMIESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDSIPE 243 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGE 290 + +K+E I E + I K R D + +MV FS + S W E E Sbjct: 244 EIMNKVENAFGAKIAE----ATVIFGKQERQDAFDAAEAEMVEMFSQQEDTDLSPWEETE 299 Query: 291 --IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 F+++ + VR +L K+ R+DGR ++ +R+I+ ++ +L R HGS+LF RG+TQ+ Sbjct: 300 RYYKMAFDELIRRYVRDSILRKQHRVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQS 359 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + +TLG DEQ +D L + F +HYNF P + GEV R+G RRE+GHG LA RA Sbjct: 360 LGTLTLGGGTDEQVIDGLETEYKKSFYLHYNFPPYSVGEVGRIGPTGRRELGHGNLAERA 419 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + VLP FPYT+RIV++ ES+GSSSMA++C LALM GVPI PVAGIAMGL+ Sbjct: 420 LKAVLPDKDSFPYTIRIVADTLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIM 479 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G+D+++L+DI G EDHLG MDFK AGT GITAMQMD+KI GI+ IM +AL +AK R Sbjct: 480 EGEDYVVLTDIMGLEDHLGDMDFKCAGTREGITAMQMDIKISGITREIMQIALNKAKSAR 539 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL+ M++ ++E R +L + PR+E +P D+I +IG GGK+I+ I+E+ +++I Sbjct: 540 FKILDIMAECIAEPRSELAPWAPRIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQIDIQ 599 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLV 647 DDGTV+I S I A+ +I+ I P +++GQV ++ +G FV G ++G+V Sbjct: 600 DDGTVRILSPDKESINKAKSIIKGIAVDPVAGDMFEGQVTRIEPYGIFVKILGGTKEGMV 659 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 HIS++ T R+ D+VK GD V V+ L D+GK+ LSMK V N Sbjct: 660 HISEMYTGRINHPLDMVKLGDKVQVRTLGM-DKGKLSLSMKGVAGN 704 >gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti VCD115] gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) [Deinococcus deserti VCD115] Length = 721 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 306/682 (44%), Positives = 438/682 (64%), Gaps = 10/682 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L +ETGR+A+ G+V YG+T++L T R K DF PLTV ++ER YAVG Sbjct: 11 GGRELSIETGRLAKLVSGSVTLRYGDTMLLVTA-QAREEKSPLDFLPLTVEFEERHYAVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPG + RRE RP E IL +R+ DR +RPLF K Y++ETQVII V+ D +++P V+ Sbjct: 70 KIPGSFHRREGRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQNAPDVLGP 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 + ASAAL +S +P+ GP +V ++GQ+++NP D+ + +DL V+GT+DAV+MVE Sbjct: 130 IGASAALSISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSRMDLVVAGTRDAVMMVEA 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK-LEEEMSQMI 248 A +SE+ ++ AI F H E + VI+ I ++ +E + D ++ L E+++ Sbjct: 190 GAQTVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQEKFNFLAEGDLTQDLVPELAEKA 249 Query: 249 KED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303 + +R + +K R + ++ +++ + + ++ ++ +D AKV + Sbjct: 250 RAGGIRDALLTTKKKERSARTKAVRDAIIAGYVPDPNAEGAAARIASLKDAYAKVEKQEL 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L++ +R DGR+ VR I + L R HGS++F RG+TQ + V TLGT DE V Sbjct: 310 RRLILEEDLRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILV 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM+HYNF P +TGEV RMG SRREIGHG LA+RAI VLP +FPY + Sbjct: 370 DDLTTEDNDKFMLHYNFPPYSTGEVKRMGGQSRREIGHGHLAKRAIRAVLPSFEEFPYVI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V E+ ES+GSSSMATVC LALMDAGVPI PVAG+AMGLV +GD + +L+DI G E Sbjct: 430 RLVGEVLESNGSSSMATVCAGVLALMDAGVPIKAPVAGVAMGLVMEGDKYRVLTDILGLE 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKV GT G+TA+QMD+K+GGI+ +M AL QA+ GRLHIL +M++VLS R Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQVMREALAQAREGRLHILGKMAEVLSSPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L PR+ + I P+ I VIG GGK +R + E GA+V I++DGT+++ S+ A Sbjct: 550 PELSPTAPRIISIKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTIRVFSADGAAA 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EA R I +T +V + Y+G VVK FGAFV+ +DG++HISQ+S ER++ D Sbjct: 609 EAVRARIAGLTKEAKVGEEYEGTVVKTAPFGAFVNLYAGQDGMLHISQISEERLSAVEDA 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685 + GD + VK+ DDRGKI L Sbjct: 669 LNVGDKLRVKIAGIDDRGKIDL 690 >gi|326407346|gb|ADZ64417.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 773 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 292/695 (42%), Positives = 443/695 (63%), Gaps = 11/695 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T IE+AGR L +ETG++A+Q++GAV+ YG+T VL + + G+ FFPL VNY+ Sbjct: 4 ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATGE-FFPLQVNYE 61 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 62 EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S V +M +S AL +S +PF+ P+ G +V YI+G+Y++NP + E + S L+L V+G + Sbjct: 122 SGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297 E+ DL+ + I EK R +K+ ++S +S+++ + I+ + E Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355 ++ VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ + Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +++ R +L P+++ + IP D+I+ VIG GG+ I I+ +TG K++IDD+G I Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 SS A I+ A+E+I + +V +IY +VV++ FGAFV+ G +D +VHIS+++ Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R DVVK GDTV VK++ DD+G++ SM+ + Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696 >gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus castenholzii DSM 13941] gi|257096706|sp|A7NPZ1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii DSM 13941] Length = 746 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 319/697 (45%), Positives = 461/697 (66%), Gaps = 12/697 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H+V ++ AGR L LETGR A Q++GAV+ YG+T++LAT V + + DFFPLTV+Y Sbjct: 6 IHSVSMDLAGRTLTLETGRFAEQANGAVVVRYGDTMLLATAVASKEPRTDTDFFPLTVDY 65 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA GKIPG + +RE +PTE IL +R+ DR +RPLF + Y+NE Q+I+ D+ Sbjct: 66 EEKMYAAGKIPGSFFKREGKPTEGAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P +S++AASAAL +S +PF GPV QV YI+G +NP + S LDL V+GT+ Sbjct: 126 NDPAPLSIIAASAALAISDIPFLGPVGAVQVGYIDGALQINPPMPNMANSDLDLVVAGTK 185 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKL 240 +AVLMVE AN+L E+V+L+A+I GH CK + + ++L K+ K+ V D S L Sbjct: 186 EAVLMVEAGANELPEEVMLEAVIQGHQVCKQICDLQNELVKLAGRPKKEFVPPPVDTS-L 244 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVSVFE 296 EE + Q + L + K VR Q + LK++++++F++ E + + FE Sbjct: 245 EEAIQQWLGNRLYEAITDANKMVRDAQTEALKREVIAHFTADEPEEELEARTAAVSAAFE 304 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I + VR ++L++ R+DGR + +R IS +VGL+ R HGS LF RG TQ + + TLG+ Sbjct: 305 NILYEEVRRMILERGERVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVLTLATLGS 364 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +EQ +D L ++ HYNF P +TGE+ R+G+P RR+IGHG LA R++ VLP Sbjct: 365 PAEEQRLDDLGIETAKRYIHHYNFPPFSTGEIRRLGSPRRRDIGHGALAERSLLAVLPPK 424 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFI 474 +FPYT+R+VSE S+GSSSMA+VCGSSLALMDAGVPI PVAGIAMGL+ KDG + Sbjct: 425 EEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIRAPVAGIAMGLITGKDG-RWR 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G EDHLG MDFKVAGT GIT +QMD+K GI+ IM A QA+ GRLH+L + Sbjct: 484 VLTDIQGIEDHLGDMDFKVAGTAKGITGLQMDIKTTGITYEIMREAFAQAREGRLHVLEK 543 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M+ V+SE R +L + PR+ + I P++I +IG GGK IR I E TGA+++I++DG V Sbjct: 544 MNAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTIRSITEATGAQIDIEEDGRVY 603 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I+++ A + A M+ ++T +V I+ G+VV++M FGAFV+ +DG+VH+S+L Sbjct: 604 ISTADAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDV 663 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 RV DV+K GD + V ++ + GK+ LS + + Sbjct: 664 GRVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700 >gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma laidlawii PG-8A] gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma laidlawii PG-8A] Length = 715 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 322/711 (45%), Positives = 451/711 (63%), Gaps = 35/711 (4%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQER 66 E AG+PL++E G IA+Q++GA + YG+TVVL+T V K GQ DFFPL V Y E+ Sbjct: 7 ETTLAGKPLRVEVGEIAKQANGAAMIYYGDTVVLSTAVA--KAKVGQTDFFPLMVIYAEK 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+ RRE RP+E E L SR+IDR +RPLF Y+NE QV+ V+ D E+S Sbjct: 65 QYAAGKIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASS 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 + +M+ +S AL +S +PF GP+ GA V I+GQ+VLNP ++ + +DL V+GT+DA+ Sbjct: 125 QMAAMLGSSIALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAGTKDAI 184 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIVIDSKDFSKLEE 242 MVE A Q+SE+V+L+AI+FGH K + E I K + EP ++ S + + +E Sbjct: 185 NMVEAGAKQVSEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELL-SLNQAIFDE 243 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW------------NEGE 290 + KE ++ + +K R ID +K ++V++F + + W + E Sbjct: 244 VFAYKGKELVKAVSLV-DKQERYDVIDAIKDEVVAHFE-QRNFWMTVDGKEVLDADQKKE 301 Query: 291 IVS----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 +++ + I K VR ++ + KVR DGR + +R +++ V LL RTHGS+LF RG T Sbjct: 302 LMNQVKVSLDRIVTKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQT 361 Query: 347 QAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 QA+ +VTLG+ + Q +D L T FM+HYNF P + GE R GAP RREIGHG L Sbjct: 362 QALGIVTLGSLNENQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGALG 421 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ VLP +FPY +R+VSEITES+GSSS AT+C S+ALM AGVPI PVAGIAMG Sbjct: 422 ERALLQVLPSEDEFPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIAMG 481 Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 L+ DG+ + ILSDI G EDH G MDFKVAGT GITA+QMD+KI GI+ IM AL+QA+ Sbjct: 482 LIMDGEHYSILSDIQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQAR 541 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAK 584 +GRLHIL+ M+ V+SE+R +L F P+V+++ I PD+IR+VIG GGK+I I+E K Sbjct: 542 KGRLHILSHMNTVISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNNVK 601 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDF------GAFV 637 ++I+ DG V I + A + I S+ +V ++Y+ +V + +MD G F Sbjct: 602 IDIEQDGRVFIMHTDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGVFA 661 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +GLVHIS+ ER VK GD + VK++ D+RG++ LS K Sbjct: 662 EIFPGTEGLVHISKWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRK 712 >gi|320547742|ref|ZP_08042026.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus ATCC 9812] gi|320447502|gb|EFW88261.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus ATCC 9812] Length = 723 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 288/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E +AGRPL +E G++A+Q++GA + YGE+ VL+ V + + G DFFPL VNY+ Sbjct: 4 QTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RPT + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSEEQKEKSLLELTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ +L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ DL+ + + EK R + +K+++ + + ++ E + + E Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 GETQIVDGLGAEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R L P+++ + I D+I+ VIG GG+ I I+E+TG K++ID++G V I S Sbjct: 543 TIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ A+E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQAAIDRAKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDTTDALVHISEIAWTRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ GD V VK++ DD+G++ SMK + Sbjct: 663 ANVSDVLEVGDEVDVKVIKVDDKGRVDASMKAL 695 >gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] Length = 825 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 293/697 (42%), Positives = 448/697 (64%), Gaps = 17/697 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ +AG+PL +E G++A+Q++GA + YG++ VL + + DFFPL VNY+E Sbjct: 5 TFQMTFAGKPLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKMAR-TDFFPLQVNYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GK PGG+++RE RP+ + L +R+IDR IRPLF++ ++NE QVI V+ +D ++S Sbjct: 64 KMYAAGKFPGGFMKREGRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDAS 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + +M A+S AL +S +PFEGP+ G QV Y++G++++NP + + S LDL V+GT+DA Sbjct: 124 APMAAMFASSLALCISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLDLTVAGTKDA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSK 239 + MVE A +LSED++L+A++ GH + +I E ++ L K A+ E + +DS+ Sbjct: 184 INMVESGAQELSEDIMLEALLKGHQAIQELIAFQEEIVATLGKEKAEVEFLQVDSQ---- 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSV 294 L +E+ DL+ + + EK R + +K ++++ + ++ E E + Sbjct: 240 LRDEIVATYTSDLQKAVQVQEKLAREEATQAVKDQVLASYEERYADDEELERILRDVSES 299 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E+++ VR ++ + K+R DGR + +R + A+V L + HGS LF RG TQA+ V+TL Sbjct: 300 LEEMEHAEVRRLITEDKIRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTL 359 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + + VD L R FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 360 APMSESKIVDGLDPEYRKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLP 419 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ Sbjct: 420 SFEDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPEILKEALAQAKKARYEILDL 539 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 + + + R +L P+++ + I D+I+ VIG GG+ I I+E+TG K++ID++G V+ Sbjct: 540 IEQTIPAPRPELAPTAPKIDTIKIALDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVQ 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIY-KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I S I+ A+E+I ++ ++ ++Y + +VV++ FGAFV+ D LVHIS+L+ Sbjct: 600 IYSPDQDAIDRAKEIIANLVREAKIGEVYPEAEVVRIESFGAFVNLFDKTDALVHISELA 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ER + DVVK GD V VK+L DD+G++ S+K + Sbjct: 660 WERTNRVEDVVKLGDKVAVKVLKIDDKGRVNASIKAL 696 >gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 745 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 299/697 (42%), Positives = 438/697 (62%), Gaps = 14/697 (2%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ + AG ++LETGR A Q+DGAVL G+TVVL T V ++L + + FFPLT Sbjct: 5 FEPIRISTNVAGIDIELETGRFANQADGAVLVRSGDTVVLVTAVT-QALPEDKGFFPLTC 63 Query: 62 NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 NYQE +YA G+IPGGY RRE RP++ E L+SR+IDR +RP F K +++E Q+I V+ Sbjct: 64 NYQEMSYAAGRIPGGYFRREIGRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSA 123 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178 D +P V+++ ASAAL +S +PF GP+ +V Y+NG +V P + SL++ + Sbjct: 124 DKNVNPDVLAVTGASAALHISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSSLNMVL 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI----DS 234 + +++AV+MVE A +SED++ +AI FGH P+ + +L + + I + Sbjct: 184 AASRNAVVMVEGGAEFMSEDLLAEAIAFGHKMIIPLFDLQDELREKIGRPKIAFTPPAEK 243 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEI 291 +F + E+ K + I K R K ++K +++ S E++ + ++ Sbjct: 244 TEFMNIVRELG---KAKFDAALSIAAKLERKKARSEVKDEVLRILSERDPENADKIKKDL 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 E ++ +++R + + VR+DGRD TVR +S +VGLL +THGS+LF RG+T ++ + Sbjct: 301 PEAMEALEKEIMRERIKSRGVRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAI 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG+ DEQ +++L+G FM+HYNF P E + PSRREIGHG LA RAI P Sbjct: 361 ATLGSSRDEQRIETLTGEITKGFMLHYNFPPFCVNEARFLRGPSRREIGHGNLAERAIKP 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FP+T+R+V+E ES+GSSSMA VCG LALMDAGVPI PVAGIAMGL K D Sbjct: 421 VLPADGEFPFTIRVVAETMESNGSSSMAAVCGGCLALMDAGVPIKAPVAGIAMGLAKVDD 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D+ +L+DI GDED +G MDFKVAGT G+TA+QMD+KI GI + ++ AL QAK R+ I Sbjct: 481 DYFVLTDILGDEDAMGDMDFKVAGTAEGVTAIQMDIKIAGIPQEVLARALAQAKEARMLI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L EM+K+L R L E P+ +++ I P++IR VIG GGK I+ I TGA ++I+D G Sbjct: 541 LEEMAKILPAPRTDLSELAPQYDVVQINPEKIREVIGPGGKNIKAITAATGADIDIEDSG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++I + + + AREM+ P+V K Y G V K++D GA V +GL+H+SQ Sbjct: 601 RIQIFAPTSESMVKAREMVLYYDQTPDVGKNYVGTVTKIIDCGAIVQIMPGVEGLLHVSQ 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 L +RV +D++ G V VK+++ G+++LS K Sbjct: 661 LDVDRVENVADLLSTGQEVTVKVVEVQPNGRVRLSRK 697 >gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 743 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 309/703 (43%), Positives = 448/703 (63%), Gaps = 21/703 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F V + G+ + +E+GR+A Q+ G V G TVVL TV + L+ + FFPLT Sbjct: 5 IFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVVLVTVC-SQPLEFDKGFFPLT 63 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V Y E+ YA G+IPG + RRE RP+E E L++R+IDR IRPLF K + QV+ +V+ Sbjct: 64 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVIS 123 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 D E+ V+++ ASAALMLS LPFEGPV G ++ + GQ+VLNP ++ Q L++ Sbjct: 124 ADQENESDVLALTGASAALMLSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLNIVF 183 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237 + + DA+ MVE +A +SEDV+++A+ +G + P++E KL ++C K + +D Sbjct: 184 AASGDALTMVEGDARFISEDVIIEALEWGRLQILPLVEIQHKLRELCGKPKMNFTPHQDD 243 Query: 238 SKL-----EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-- 290 L E ++ ++E LRV PEK R +K K++ ++ +W E E Sbjct: 244 EALVACVHELALANGMEEALRV----PEKMARKDARKAVKDKVMETLKAD-PAWAENEAA 298 Query: 291 ---IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + ++ K+VR ++++ R+DGRD+ TVR I Q GLL R HGS+LF RG+T+ Sbjct: 299 LKAVSDILGGLEKKLVRARIVNEGTRIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETK 358 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++VV TLG+ DEQ +DSL+G FM+HYNF P + GEV + SRREIGHG LA + Sbjct: 359 SLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEK 417 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 ++ PVLP A FP+TLR+V+E ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+ Sbjct: 418 SLRPVLPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLI 477 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+G+ FI+L+DI GDED LG MDFK+AGT G+T +QMD+KI G++ IM A+QQA+ G Sbjct: 478 KEGEKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTEIMRTAMQQAREG 537 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 RLHIL EM+K ++ R +L + P+ + + PD IR +IG GGK I+ I TGA V+I Sbjct: 538 RLHILEEMAKAIASPRKELSRYAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDI 597 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +D G V I + + +E AREM+ P++ K Y +V K+M+ GA V + LV Sbjct: 598 EDSGRVSIFAPTAEALEKAREMVSYYDQRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALV 657 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 H+SQL RV + DV + G+ + VK+++ + +I+ S K V Sbjct: 658 HVSQLDVNRVEQPGDVARLGEDMLVKVIEING-DRIRASRKAV 699 >gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB27] gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus] gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27] Length = 713 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 304/691 (43%), Positives = 445/691 (64%), Gaps = 13/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E+ AGRPL LETG+ A+Q+ G+VL Y +TVVLAT + + DF PLTV ++ Sbjct: 11 HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPG ++RRE RP E IL +RM DR IRPLF K +++E Q+I+ V+ D ++ Sbjct: 70 ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++ +AASAALMLS +P+EGP+ +V I G +VLNP L E ++ LDL V+G+++ Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 A+LMVE EA ++ E+ ++ A+ F H E +P++E +A+ AK P + + S EEE Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAK-PKMAWTPPESLPEEE 248 Query: 244 MSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSV 294 + ++ L K R + + + +++++ E + +EG+ S Sbjct: 249 KEALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESA 308 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F+++ + +R ++L++ R DGR + +R I +V +L R HGS++F RG+TQ + VTL Sbjct: 309 FDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTL 368 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT DEQ +D L + F++HYNF P +TGEV R+ SRRE+GHG LA+RA+ V+P Sbjct: 369 GTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + FPYT+R+V ++ ES+GSSSMATVC LALMDAGVPI PVAG+AMGLV + + + Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAV 488 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT G+TA+QMD K+GG+ ++ AL QA+ RL IL+ Sbjct: 489 ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M VL R +L F PR+ + +P ++I VIG GGK +R + E+ G +V+I++DGTV+ Sbjct: 549 METVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVR 607 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I SS L A++ I +T +V +IY+G V ++ FGAF+ +GL+HISQ++ Sbjct: 608 IYSSDLNAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAP 667 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RV + D +K GD + VK+ D+RGKI L Sbjct: 668 GRVERVEDHLKVGDVIKVKVHRIDERGKIDL 698 >gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 703 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 294/684 (42%), Positives = 449/684 (65%), Gaps = 5/684 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G P +ETG A+Q++GAV+ G+T VL V + DF PLTV Y+E+ YA GK Sbjct: 12 GAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE +P+E EIL++R IDR IRPLF K + N+ + + D + P V+ +V Sbjct: 72 IPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDPDVLGIV 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 ASAAL +S +PFEGP+ G +V ++GQ+++NP + S L++ V+G++DA++MVE Sbjct: 132 GASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAGSKDAIVMVEGG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250 A ++ E+V+L+A++FGH E K +IE +L AK ++ + ++ L+E+ ++ Sbjct: 192 AKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKEKIEIPIDEEEILLKEKFKELAYV 251 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 ++ + I +K R KQI+ + +++ + + V ++D+ + V+R ++L + Sbjct: 252 RIKEAFNISDKKERNKQINAIFEEIKTTLEIPEEKVKKASFV--YKDVVSNVMRDLVLYE 309 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGT 369 +R+DGR E +R I +VG+ R HGS++F RG TQA V VTLG+ + Q +S+ +G Sbjct: 310 NIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGE 369 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 FM+HYNF P +TGE SRREIGHG LA RA+ P++P +FPY +R+VS+I Sbjct: 370 TLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSDI 429 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K D F++LSDI GDEDHLG M Sbjct: 430 LESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLGDM 489 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+T++QMD+K+ G++ I+ AL+QA+ GR +IL+ M + + E R +L + Sbjct: 490 DFKVAGTRDGVTSIQMDIKVKGLTREILQKALEQAREGRNYILDLMYQAIPEPRKELSPY 549 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P V + + P++I +IG GK I+ I+E+TG K+++D G VKI ++S E A +M Sbjct: 550 APTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYATSKIAAEKAIDM 609 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I + E+ ++Y G+V +V D+GAFV + L+H+SQ+S+ER+ DVVK GD Sbjct: 610 INQLIMDIELGEVYLGKVTRVEDYGAFVELMPGKLSLLHVSQISSERLKSAKDVVKVGDV 669 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693 + VK+ + DD+G+IK+S+K V +N Sbjct: 670 LKVKVSEIDDQGRIKVSLKDVPEN 693 >gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Nigg] gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Nigg] gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Weiss] gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum MopnTet14] gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum Nigg] Length = 693 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 309/688 (44%), Positives = 439/688 (63%), Gaps = 25/688 (3%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 + L ETG+IARQ++GAVL ET V ++ SL + DF P V+YQE+ + GK Sbjct: 14 KTLIFETGKIARQANGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRVDYQEKFSSAGKT 72 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 GG+L+RE RP+E EILISR+IDRS+RP F + QV+ V +D ++ P +++ Sbjct: 73 SGGFLKREGRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAICG 132 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 ASAAL +S +P V G +V + G++V+NP DE D LDL ++GT AVLM+E Sbjct: 133 ASAALAISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDLVMAGTASAVLMIEGHC 192 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL 252 + L+E+ VL+AI FG + +AI K KE K S + + + ED+ Sbjct: 193 DFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKE------KQLSAVLD-----LPEDV 241 Query: 253 R--VSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + VS FI EK+ + D L++ +V+ E S ++ + + F++ ++ Sbjct: 242 QNVVSNFIREKFEKALSFRDRDALEQVSKELEESVVANLVQEESDFSLLNVKAAFKNAKS 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++ D +R+DGR + +R IS +V L RTHGS LF RG+TQ++ V TLG Sbjct: 302 NQMRALIRDLGIRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMA 361 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA +A+ VLP+ ++FP Sbjct: 362 QRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEASRFP 421 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+ S ITES+GSSSMA+VCG L+LMDAGVPI PVAGIAMGL+ D D I+LSDIS Sbjct: 422 YTVRVESNITESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLILDQDKAIVLSDIS 481 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFKVAGT+ GITA QMD+K+ GI+ IM AL QAK+GR HILN M++V+S Sbjct: 482 GIEDHLGDMDFKVAGTEEGITAFQMDIKVEGITHEIMEQALAQAKQGRSHILNLMTQVMS 541 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + + PR+E M I +I VIG GGK IR I+E++GA+V+I+D+G + I++++ Sbjct: 542 SPNDSVSRYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDNGLINISANTQ 601 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A+E+I +T EV KIY G+V V+ FGAFV ++GL HIS+LS ++V Sbjct: 602 ESIDKAKELIEGLTGEVEVGKIYNGRVTSVVAFGAFVEVLPGKEGLCHISELSKQKVDNV 661 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +D VKEGD + VKLL +++G++KLS K Sbjct: 662 ADFVKEGDRLAVKLLSINEKGQLKLSHK 689 >gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 635 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 289/636 (45%), Positives = 424/636 (66%), Gaps = 7/636 (1%) Query: 59 LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118 +TV+Y+E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++ V+ Sbjct: 1 MTVDYEEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVL 60 Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLF 177 D ++ P + +M+ AS AL +S +PF GP+ G +V Y+NG +V+NP+ +E S L+L Sbjct: 61 SVDQDNPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYVNGAFVINPKEEERAVSELNLT 120 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDS 234 V+G+ DAV+MVE AN+LSE++VLDAI+FGH E + ++E + C KE P + Sbjct: 121 VAGSYDAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAV 180 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 + +LEE++ +E L + +K R I +K + + +F E+ + EI + Sbjct: 181 SE--ELEEKIRVYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQAK-EISQI 237 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 I+ +VR ++ +K+R DGR VR +S +VG+L RTHGS LF RG TQ + V TL Sbjct: 238 LYKIEKSIVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTL 297 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G+ DEQ +D L ++ HYNF + GE M +P RREIGHG LA RA+ P++P Sbjct: 298 GSIGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIP 357 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ Sbjct: 358 SIEDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYS 417 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT GITA+QMD+KI GI+ +I+ AL QAK GR IL++ Sbjct: 418 ILTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILDK 477 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + + +L + PRVE + I D+IR+VIG GGKV+R I+++TG ++I +DG + Sbjct: 478 MLECIDKPAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIF 537 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I S + ++ AR+MI I EV +IY G+V + + FGAFV ++GL HISQL+ Sbjct: 538 ITSPNTEAMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAK 597 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV +VV GD + VK+++ D++G+I +S KV+ Sbjct: 598 HRVESVENVVHIGDELQVKVIEIDEKGRINVSHKVL 633 >gi|171778426|ref|ZP_02919584.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282827|gb|EDT48251.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 730 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 287/693 (41%), Positives = 437/693 (63%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E +AGRP +E G++A+Q++GA + YGE+ VL+ V + + G DFFPL VNY+ Sbjct: 4 QTFETTFAGRPFVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RPT + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAEQKEASLLELTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ +L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ DL+ + + EK R + +K+++ + + ++ E + + E Sbjct: 243 EIIAAYNADLQKAVQVEEKKTREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRIDEIRPLDAEIDFLPKIHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 GETQIVDGLGDEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R L P+++ + I D+I+ VIG GG+ I I+E+TG K++IDD+G V I S Sbjct: 543 TIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ GD V VK++ DD+G++ SMK + Sbjct: 663 ANVSDVLEVGDEVDVKVIKVDDKGRVDASMKAL 695 >gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] Length = 732 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/687 (41%), Positives = 436/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ + Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVTVY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID+DG V I SS A I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGNVSIYSSDQAAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D++G++ SMK + Sbjct: 669 VQIGDFVDVKVIKIDEKGRVDASMKAL 695 >gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium thermocellum ATCC 27405] gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum ATCC 27405] gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] Length = 700 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T +E AGR L +ETG++A+ ++G+VL YG+TVVL+T + ++G DFFPL+V+Y+E Sbjct: 4 TFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+++RE +P+E IL +R+IDR +RPLF K +N+ ++ V+ D ++S Sbjct: 64 RLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNS 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +++ +S A+ +S +PF GPV + I+G+ ++NP + + S + + ++GT++ Sbjct: 124 PELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQMYVTLAGTRNK 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 ++M+E AN++ ++V+LDAI GH E K +++ I + K K +S +++ EE+ Sbjct: 184 IVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYES---AEVPEEI 240 Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++E +R + +K VR K IDDL K++ +F+ E E I ++ Sbjct: 241 FNAVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFA-EVFPEMEPAIKEAIYKLEK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVR +L++ R+DGR + +R +SA+VGLL R HGS LF RG TQ + VTLG D Sbjct: 300 KVVREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDV 359 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D + + +M HYNF + GE P RREIGHG LA RA+ PV+P +FP Sbjct: 360 QILDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFP 419 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILS 477 YT+R+VSE+ S+GS+S +VCGS+LALMDAGVPI KPVAGI+ GLV D D F+ Sbjct: 420 YTIRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFM 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536 DI G ED G MDFKVAGT GITA+Q+D+KI G++E I+ A + ++GRL+I+ N + Sbjct: 480 DIQGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLL 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + E R Q+ ++ P++ I PD+IR VIG GGK+I I+++TG K++I+DDG V I Sbjct: 540 KAIPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIF 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS + + AR MI +I E +++ G+V++V FGAFV F ++GLVHIS+L +R Sbjct: 600 SSDIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V + D+V+ GD + VK+++ D +G++ LS K Sbjct: 660 VERVEDIVRVGDQILVKVIEIDKQGRVNLSRK 691 >gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 1313] Length = 700 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T +E AGR L +ETG++A+ ++G+VL YG+TVVL+T + ++G DFFPL+V+Y+E Sbjct: 4 TFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+++RE +P+E IL +R+IDR +RPLF K +N+ ++ V+ D ++S Sbjct: 64 RLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNS 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +++ +S A+ +S +PF GPV + I+G+ ++NP + + S + + ++GT++ Sbjct: 124 PELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQMYVTLAGTRNK 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 ++M+E AN++ ++V+LDAI GH E K +++ I + K K +S +++ EE+ Sbjct: 184 IVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYES---AEVPEEI 240 Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++E +R + +K VR K IDDL K++ +F+ E E I ++ Sbjct: 241 FNAVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFA-EVFPEMEPAIKEAIYKLEK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVR +L++ R+DGR + +R +SA+VGLL R HGS LF RG TQ + VTLG D Sbjct: 300 KVVREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDV 359 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D + + +M HYNF + GE P RREIGHG LA RA+ PV+P +FP Sbjct: 360 QILDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFP 419 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILS 477 YT+R+VSE+ S+GS+S +VCGS+LALMDAGVPI KPVAGI+ GLV D D F+ Sbjct: 420 YTIRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFM 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536 DI G ED G MDFKVAGT GITA+Q+D+KI G++E I+ A + ++GRL+I+ N + Sbjct: 480 DIQGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLL 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + E R Q+ ++ P++ I PD+IR VIG GGK+I I+++TG K++I+DDG V I Sbjct: 540 KAIPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIF 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS + + AR MI +I E +++ G+V++V FGAFV F ++GLVHIS+L +R Sbjct: 600 SSDIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V + D+V+ GD + VK+++ D +G++ LS K Sbjct: 660 VERVEDIVRVGDQILVKVIEIDKQGRVNLSRK 691 >gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 779 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 304/682 (44%), Positives = 437/682 (64%), Gaps = 10/682 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L +ETG++A+ G+V YG+T++L T + + DF PLTV ++ER YAVG Sbjct: 11 GGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDT-QSKLDFLPLTVEFEERHYAVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPG + RRE RP E IL +R+ DR IRPLF K Y++ETQVII V+ D +++P V+ Sbjct: 70 KIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDVLGP 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 + A+AAL +S +P+ GP +V I+GQYV+NP ++ + +DL V+GT++AV+MVE Sbjct: 130 IGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTREAVMMVEC 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248 A +SED ++ AI F H E + VI I ++ E + + + E+++ Sbjct: 190 GAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYVPELTEKA 249 Query: 249 KE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303 K LR + K R ++ L+ ++ + + ++ E+ +D KV + Sbjct: 250 KAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFGKVEKREL 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L++ +R DGRDS+TVR I + L HGS++F RG+TQ + V TLGT DE + Sbjct: 310 RRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + F++HYNF P +TGEV RMG SRREIGHG LA+RAI VLP +FPY + Sbjct: 370 DDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V ++ ES+GSSSM TVC +L+LMDAGVP+ PVAG+AMGLV +GD++ +L+DI G E Sbjct: 430 RVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVLTDILGLE 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKV GT G+TA+QMD+K+GGI+ IM AL QAK GRLHIL +M++VL+ R Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAEVLAAPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P + + I P+ I VIG GGK +R + E GA+V I++DGTV+I S+S Sbjct: 550 AELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIFSASGESA 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EA + I ++T +V + ++G VVK+ FGAFV+ +DG++HISQLS +RV DV Sbjct: 609 EAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQRVENVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685 + GD + VK+ + DDRGKI L Sbjct: 669 LTVGDKLKVKIANIDDRGKIDL 690 >gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] Length = 705 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/681 (42%), Positives = 439/681 (64%), Gaps = 14/681 (2%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGKIPGG 76 +ETG +ARQS +++ G T VL +VV K + +FFPL VNYQER+Y++G+IPG Sbjct: 22 IETGSLARQSTSSLIIHMGGTSVLISVVEQTEEKKQESNFFPLIVNYQERSYSIGRIPGS 81 Query: 77 YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 + RRE R ENEIL SR+IDRS+RP F + ++NE Q+I V+ + + +P ++S++ ASA Sbjct: 82 FFRREGRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINPDILSIIGASA 141 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELEANQL 195 AL +S +PF GP+ ++ YI G+Y+LNP D + LDL VSGT+D +LMVE ++ L Sbjct: 142 ALSISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDLIVSGTEDKILMVEARSSLL 201 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKLEEEMSQMIKEDLR 253 ED++L+AI F K +I+ I+KL++ + + + DF L+ + + +++DLR Sbjct: 202 KEDIILEAIDFSKKYQKTIIDNINKLSEKIGSKKVFQKKEETDFH-LKNYILEKVEKDLR 260 Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 + IP+K R +I ++K K+ S S +N + +F I+ ++VR+ +L++ +R Sbjct: 261 DAYLIPDKKTRLSRIQEIKDKIFSEASLNLEVFNSFQANEIFFGIEKEIVRSRILNEGIR 320 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373 +DGR +R I +VG+L RTHGSSLF RG+TQ +V+VTLG D Q D + G + + Sbjct: 321 IDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKLDH 380 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F++HYNFLP + GE+ +G P RREIGHG L +R + V+P + F YT+R+VSE+ ES+ Sbjct: 381 FILHYNFLPYSVGEIGLVGVPKRREIGHGNLVKRGMIAVMPNFSNFSYTIRVVSEVIESN 440 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493 GSSSMA+ CG+SLA+MDAG+PI +AGI++GL+K+ ++F+ILSDI GDEDH G MDFKV Sbjct: 441 GSSSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENFVILSDILGDEDHFGDMDFKV 500 Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553 G + GI+A+QMD+KI GI + I+ AL QAK R IL +M +S R + F PR+ Sbjct: 501 MGNEEGISALQMDLKINGIEDEILRFALFQAKEARCKILKKMKNAISNPRKSISNFAPRI 560 Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613 + I P +I+++IG GG IR + E+T + ++I+D G VKI+S I+ I+ I Sbjct: 561 RKIYIEPHKIKDLIGKGGSTIRSLTEETNSVIDIEDTGEVKISSMDELSIKKTILRIKEI 620 Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHIS--------QLSTERVAKTSDVV 664 T E+ +YK +V++++DFG FV ++GLV + + S ++V + Sbjct: 621 TSEVEIGCVYKAKVIRIVDFGLFVSILSNKKEGLVRMQTNKPLKDIRFSNKKVTSRKSQI 680 Query: 665 KEGDTVWVKLLDFDDRGKIKL 685 + G + VK +D D +G+I+ Sbjct: 681 QIGQILSVKAVDIDRQGRIQF 701 >gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] Length = 702 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/686 (43%), Positives = 445/686 (64%), Gaps = 7/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + +GR LK+ G++A Q++G+ L GETVVL + ++G DFFPL+ +++E+ Y+ Sbjct: 8 DLSGRELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYS 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE RP+E IL SR+IDR +RPLF + Y+N+ QVI + + ++ P ++ Sbjct: 68 VGKIPGGFIKREGRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPDIL 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF GP V Y++G+YV+NP + + + S L++ VSGT+DA++MV Sbjct: 128 AMIGSSIALTISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSRLNITVSGTKDAIMMV 187 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQ 246 E A+ LSE+ VL+AI+F H E K + I + + KE ++I +D L + + Sbjct: 188 EAGADILSEEEVLNAILFAHEEIKSICNFIETIREEVGKEKSEVIIKQRD-EDLFNSIIE 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 KE + + P K R + +D + K++ F ++ +GEI S E + VR + Sbjct: 247 FSKEQIISALRTPNKMEREENLDKITKEIFEKFLPDYED-KKGEINSAIESVIVDEVRRL 305 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++++ +R D R+ + VR IS + GLL RTHGS LF RG TQ + + TLG + Q +D + Sbjct: 306 IIEEGIRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGV 365 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +M YNF P + G+V + +P RREIGHG LA RA+ PVLP +FPYT+R+V Sbjct: 366 IDEDDKRYMHQYNFPPFSVGDVRPLRSPGRREIGHGALAERALVPVLPSEEEFPYTMRLV 425 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484 SE+ S+GSSS A++CGS+L+L+DAGVPI VAGIAMGL+KD + IL+DI G ED Sbjct: 426 SEVLSSNGSSSQASICGSTLSLLDAGVPIKDSVAGIAMGLIKDEKTNKIAILTDIQGLED 485 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H G MDFKVAGT GITA+QMD+KI GIS I+ AL++AKR RLHIL+ M+ ++ Sbjct: 486 HFGDMDFKVAGTKDGITALQMDIKIDGISREILATALEKAKRARLHILSIMNDCIATPSE 545 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ ++ P++ M I P++IR VIG GGKVI I+++TG K++ DDG + I + S E Sbjct: 546 EMSKYAPKIFTMQILPEKIREVIGPGGKVINKIIDETGVKIDTFDDGRIAITADSRKNGE 605 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A EMI I EV +IY G + + +FGAFV ++GL+HIS ++ ER+ K D+ Sbjct: 606 RAIEMINEIVKEIEVGEIYSGVITTITNFGAFVELIKGKEGLLHISNMTHERLNKVEDLF 665 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VK+++ D++GKIKLS K + Sbjct: 666 KVGDVVEVKVIEIDNQGKIKLSRKAL 691 >gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans R1] gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1] Length = 810 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 304/682 (44%), Positives = 437/682 (64%), Gaps = 10/682 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L +ETG++A+ G+V YG+T++L T + + DF PLTV ++ER YAVG Sbjct: 42 GGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDT-QSKLDFLPLTVEFEERHYAVG 100 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPG + RRE RP E IL +R+ DR IRPLF K Y++ETQVII V+ D +++P V+ Sbjct: 101 KIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDVLGP 160 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 + A+AAL +S +P+ GP +V I+GQYV+NP ++ + +DL V+GT++AV+MVE Sbjct: 161 IGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTREAVMMVEC 220 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248 A +SED ++ AI F H E + VI I ++ E + + + E+++ Sbjct: 221 GAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYVPELTEKA 280 Query: 249 KE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303 K LR + K R ++ L+ ++ + + ++ E+ +D KV + Sbjct: 281 KAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFGKVEKREL 340 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L++ +R DGRDS+TVR I + L HGS++F RG+TQ + V TLGT DE + Sbjct: 341 RRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILI 400 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + F++HYNF P +TGEV RMG SRREIGHG LA+RAI VLP +FPY + Sbjct: 401 DDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVI 460 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V ++ ES+GSSSM TVC +L+LMDAGVP+ PVAG+AMGLV +GD++ +L+DI G E Sbjct: 461 RVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVLTDILGLE 520 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKV GT G+TA+QMD+K+GGI+ IM AL QAK GRLHIL +M++VL+ R Sbjct: 521 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAEVLAAPR 580 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P + + I P+ I VIG GGK +R + E GA+V I++DGTV+I S+S Sbjct: 581 AELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIFSASGESA 639 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EA + I ++T +V + ++G VVK+ FGAFV+ +DG++HISQLS +RV DV Sbjct: 640 EAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQRVENVEDV 699 Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685 + GD + VK+ + DDRGKI L Sbjct: 700 LTVGDKLKVKIANIDDRGKIDL 721 >gi|302874669|ref|YP_003843302.1| polyribonucleotide nucleotidyltransferase [Clostridium cellulovorans 743B] gi|307690717|ref|ZP_07633163.1| polynucleotide phosphorylase/polyadenylase [Clostridium cellulovorans 743B] gi|302577526|gb|ADL51538.1| polyribonucleotide nucleotidyltransferase [Clostridium cellulovorans 743B] Length = 705 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H +E AGR LK+E G+I S+ A+L +YG+TVV+ + +DG DFFPL++ Y+ Sbjct: 3 HILETTVAGRTLKVEFGKIGMLSNCAMLISYGDTVVMVNANASENPRDGIDFFPLSIEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE RP+E IL +R IDR IRPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERFYSVGKIPGGFIKREGRPSEKSILNARAIDRPIRPLFPKGYRNDVQVVCTVLSVEQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183 P++++M AS L+LS +PF PV V I+G +VLNP ++E + ++DL + T++ Sbjct: 123 LPNILAMNGASLGLLLSSIPFVDPVATVSVGLIDGNFVLNPTVEERKLSTMDLTICATRE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV-IDSKDFS 238 V+M+E +++ E+V++ AI +G +C+P+I EA SK K + +D Sbjct: 183 RVMMIEASGDEIPEEVMISAINYGFEQCQPIIKFQEEARSKFGKEKVTPTLYHVDET--- 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 LE+E+++ E L+ + +I +K R +++ +K+ + S F+ ++ +G+I V + Sbjct: 240 -LEKEVTEYSFEMLKEAMYITDKDQRNERLKVIKEDINSAFAEKYPDA-KGDIGEVIYNT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR +ML+KK R DGR + VR+I +V LL RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRDMMLNKKRRPDGRAFDEVRNIGCEVDLLPRTHGTGLFTRGLTQVLTVATLGAIG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L + +M HYNF + GEV + P RREIGHG LA +A+ P++P + Sbjct: 358 DVQIIDGLGEEESKRYMHHYNFPAYSVGEVKPLRGPGRREIGHGALAEKALVPLIPSEEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ + D +L Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITNEDLTQEGVL 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT GITA+Q+D KI G+S+ ++ A++ A++ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTKGITAIQVDTKIKGLSDYVIRTAIEDARKARLHILEKID 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + + R +L ++ PR+ M+I P++IR+VIG GGKVI I+ +TG K++I +DG + I Sbjct: 538 ECIEKPREELSQYAPRIITMSIDPEKIRDVIGAGGKVINKIIAETGVKIDIKEDGKIFIM 597 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A +MI +T +V +IY G+V K+ FGAFV ++GLVHIS+L R Sbjct: 598 SADSVGANKAVKMIDDLTREIKVGEIYLGKVTKITTFGAFVEVLPNKEGLVHISKLDVTR 657 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K D+V GD + VK+ + D++G++ LS K Sbjct: 658 VNKVEDIVSVGDEILVKVTEIDNQGRVNLSRK 689 >gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK72] Length = 733 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NPR ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces brasiliensis DSM 5305] gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces brasiliensis DSM 5305] Length = 711 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 301/690 (43%), Positives = 440/690 (63%), Gaps = 6/690 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +VE E AGR K TG IA+Q+ GAVLA +G+TV+L + ++G DFFP+TV+Y+E Sbjct: 7 SVEREIAGRIFKFSTGEIAKQASGAVLAQFGDTVLLVAAQTGPA-REGIDFFPMTVDYRE 65 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A GK PGG+L+RE RP+ +EIL +R+ DR +RPLF K + +E QV V+ D E+ Sbjct: 66 RFAAAGKFPGGFLKREGRPSTHEILTARLTDRPLRPLFPKSFHDEVQVQSIVLSSDGENP 125 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 VVS+ ASAAL LS +PF+GP+ +V I G+++L P ++ DQG LDL V+G +++ Sbjct: 126 SDVVSINGASAALSLSPVPFQGPIGAVRVGMIEGEFILFPTKEQIDQGDLDLVVAGNKES 185 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 +LM+E Q+ EDV+ DA++F H + E +L K E + + E+ Sbjct: 186 ILMIEGFGRQIPEDVMADALMFAHKGIIELCELQEELVKAAGVEKFEWEEPAENPFIGEV 245 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVV 303 ++ L+ + EK R + +K++++ F E ++ +E G ++ +D KV Sbjct: 246 RELAASKLKAARTNSEKQKRSEAAAAVKEELIEKFFPEGATEDEQGRTLAQLKDAIYKVD 305 Query: 304 RTVMLDKKV---RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + D + R+DGR +R IS +VGL+ R HGS+LF RG+TQ++ +TLGT D+ Sbjct: 306 KQACRDLTIEGKRLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLASLTLGTVRDQ 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q V+ L G FM+ YNF + GEV + P RREIGHG LA R++ VLP + FP Sbjct: 366 QRVEDLFGEHTKRFMLDYNFPSYSVGEVRPIRGPGRREIGHGALAERSVQWVLPDESAFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RI+S+ITES+GSSSMA+VC ++LALMDAG+PI +PVAGI++GLVKDGD + +L+DI Sbjct: 426 YTIRIISDITESNGSSSMASVCNATLALMDAGIPIRQPVAGISIGLVKDGDKYTLLTDIM 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDH G MDFK+AGT GIT +Q+D+KI GI+E I+ L+QA++ RL +L M + Sbjct: 486 GDEDHFGDMDFKIAGTQKGITGIQLDLKIDGINEEIIRGTLEQARKARLELLKAMLTEIR 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R ++ PR+ I P++I +IG GGK IR + E TG +++I++DGTV IASSS Sbjct: 546 RPRKEISMLAPRILTCKIDPEKIGLLIGPGGKNIRQLQEDTGTQIDIEEDGTVTIASSSG 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 EAA+ I ++T+ V ++Y G V+ + DFGAF+ +DGL HIS+LS V Sbjct: 606 EGAEAAKARIEAMTEEVRVGRVYNGTVIAIKDFGAFIEIAPGKDGLCHISELSDGFVKNV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV K GD + VK++ D++ ++KLS K + Sbjct: 666 GDVCKIGDKMEVKVIAVDEQNRVKLSRKAL 695 >gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] Length = 703 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 302/691 (43%), Positives = 433/691 (62%), Gaps = 8/691 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TVE ++AGR L + TG +A+Q+ GAV YGET+V S + G DFFPLT +Y+E Sbjct: 4 TVERQFAGRTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPS-RPGTDFFPLTCDYRE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A GK PGG+++RE RPT E+L SR+ DR IRPLF + Y E QV+ NV+ D + Sbjct: 63 RLAAAGKFPGGFIKREGRPTLREVLTSRLTDRPIRPLFPEGYIEEVQVMSNVLASDGVND 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P V+S++ ASAAL L+ +PF+GP+ +V I+G+++L P ++ S LDL V+GT+ + Sbjct: 123 PDVLSIIGASAALCLAPVPFQGPLAAVRVGLIDGEFILFPTQEQIADSELDLVVAGTEKS 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 VLM+E QL ED + DAI+FGH + + +L +E V+ + + + E + Sbjct: 183 VLMIEGFGKQLPEDQMADAIMFGHRTIVELCQLQLELVAKSGRERFVLPAPEANPFEAIL 242 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-----SSEHSSWNEGEIVSVFEDIQ 299 + LR K R Q KK++++ F + + + + + F ++ Sbjct: 243 LEKAYAKLREVKQSSVKKERSSQTSAYKKELLAEFFPNDAETTAAGLTKAQFFAAFYAVE 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++LD VR+DGR + +R +S +L R HGSSLF RG+TQ++ VTLGT D Sbjct: 303 TKAVRDLILDG-VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q V+ L G + FM+ Y F P + GE + P RRE+GHG LA R++ VLP +F Sbjct: 362 VQRVEGLFGEEAKAFMLDYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPEKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R++S+I ES+GSSSMA+VC ++LALMDAGVPIS+PVAGI++GLVK D FI+L+DI Sbjct: 422 PYTIRVISDILESNGSSSMASVCSATLALMDAGVPISQPVAGISIGLVKSADRFILLTDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDH G MDFKVAGT G+T +Q+D+KI GISE I+ L+QAK+ R+ +L M + Sbjct: 482 MGDEDHFGDMDFKVAGTQKGVTGIQLDLKIDGISEEIVRATLEQAKKARIELLKTMLSAI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 R ++ PR+ I P +I +IG GGK IR I EQTGA ++I+DDGTV IASSS Sbjct: 542 RRPRSEISTHAPRLLRTKIDPSKIGLLIGPGGKNIRAIQEQTGATIDIEDDGTVVIASSS 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E A + +I + +V ++Y G V + DFGAF+ +DGL HIS+LS V Sbjct: 602 SVGAEDALARVEAIAEEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVKN 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++VV+ G+ + VK++ D++ ++KLS K V Sbjct: 662 VNEVVQVGEKIQVKVIAIDEQNRVKLSRKAV 692 >gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] Length = 698 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 312/691 (45%), Positives = 447/691 (64%), Gaps = 23/691 (3%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVGK 72 + L LETG +A+Q+DG+V+A G+T+VLAT V D+ K G DF PLTVNY+ERTYA GK Sbjct: 16 KTLSLETGWVAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTVNYKERTYAAGK 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+ +RESR ++ E L SR+IDRS+RPLF Y ET V V+ D V++++ Sbjct: 76 IPGGFFKRESRASKKETLASRIIDRSLRPLFPSGYTCETNVTAMVLSADGVYDTEVLAVM 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 A+S AL++S +PF PV ++ +NG +++NP L+E + +DL +SG+ + +LMVE Sbjct: 136 ASSTALIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDMDLIISGSLEGMLMVEGG 195 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI--- 248 A ++SE+ V+ A+ KP I+ + K A++ KE + FS E + Q + Sbjct: 196 AKEVSEEDVIKAL----ETAKPAIDILCK-AQLELKEKA--GKEKFSFQAETVPQDVVDL 248 Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-----EDIQA 300 K V+ + Y KQ D+K + +E G+ S F E++ Sbjct: 249 GNNKYRAEVANILNAFY--DKQTRDVKIAELKAAFAEEIKEAHGDNASTFAGITMENLSY 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + R ++L+K VR+DGR ++ +R +++ GLL R HGS+LF RG TQ +VV TLGT D Sbjct: 307 EESRKLVLEKGVRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLGTSGDA 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q V+SL + FM+HYNF +TGE AP RREIGHG LARRA+ P++P +FP Sbjct: 367 QLVESLEESYDETFMLHYNFPGFSTGECKPDRAPGRREIGHGELARRALLPLIPDADKFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VS+I ES+GSSSMA+VCG SL+L DAGVP+ +GIAMGL+K+GD + +LSDI Sbjct: 427 YTIRVVSDIMESNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAVLSDIM 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFK+ G+ +GITA QMD+K+ GGIS I+ A+ QA +GR+HI++ M VL Sbjct: 487 GLEDHLGDMDFKLTGSRNGITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDHMDSVL 546 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 E R + +F P + M IP D+I +IG GGK I+ I E T K++I+DDG V+IA+ + Sbjct: 547 PEPRKDVSKFAPVIYTMRIPQDKIGALIGPGGKNIKRITETTDTKIDINDDGVVQIAAVN 606 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ A+ I +T E+NKIYKG+VV + FGAFV +DGL+HIS++ +R+ K Sbjct: 607 GDKLAMAKAEIELLTAEVELNKIYKGKVVSIQPFGAFVELIPGKDGLLHISEIDKKRINK 666 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+K GD V VK+++ D+ GK++LS KV+ Sbjct: 667 VEDVLKMGDIVEVKVVEIDNNGKVRLSRKVL 697 >gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium acetobutylicum ATCC 824] gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium acetobutylicum ATCC 824] gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium acetobutylicum EA 2018] Length = 703 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/693 (43%), Positives = 446/693 (64%), Gaps = 9/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H +E + AGR LK+E G+ S+ A+ +YG+TVV+ V ++G DFFPL++ Y Sbjct: 2 LHFLETDIAGRKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE RP+E IL +R IDR +RPLF K Y+N+ QV+ VM + + Sbjct: 62 EERQYSVGKIPGGFVKREGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 + P +++M AS AL LS +PF PV V I+G++VLNP L+E ++ SLDL V T Sbjct: 122 NLPEILAMNGASMALCLSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSSLDLTVCATN 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSK 239 + V+M+E A+++ ED+++ AI FG N C+ ++ K K KE P + K+ + Sbjct: 182 ERVMMLEAGADEIPEDLMIAAIDFGFNACQDIVAFQEKAMKEFGKEKVTPELYHPKE--E 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +E+++++ E ++ +I ++ R ++ ++K+K+ + F+ ++ + +I V +Q Sbjct: 240 IEKDVTEFAFESIKEIMYITDRDERNLRLREIKEKISNEFAEKYPD-DGADIDEVVYTLQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 KVVR ++L + R DGR + +R IS V LL RTHGS LF RG TQ + V TLG D Sbjct: 299 KKVVRNMLLKEHRRPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVMTVTTLGPIGD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF P +TGEV + P+RREIGHG LA +A+ P++P +F Sbjct: 359 AQVIDGLGVEESKRYMHHYNFPPYSTGEVKPLRGPNRREIGHGALAEKALVPLIPSEEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI +P AGIAMGL+ D +++ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAVIT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GITA+Q+D KI G+S+ + A+ A++ RL IL +M Sbjct: 479 DIQGLEDFFGDMDFKVAGTEKGITAIQVDTKIHGLSKYCIKTAINDARKARLFILEKMVA 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L + PR + I D+IR +IG GGK I I+E+TG K++I +DGTV + S Sbjct: 539 CINEPRKELSTYAPRAYTINIDTDKIRTLIGTGGKTINKIIEETGVKIDIREDGTVFVLS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A +MI +T +V ++Y G+V K+ +FGAFV ++GLVHIS+L +V Sbjct: 599 SDADSANRALKMIDDLTKDVKVGEVYLGKVTKITNFGAFVEVLPGKEGLVHISKLDINKV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K DVV GD + VK+ D D++G++ LS K V Sbjct: 659 NKVEDVVSVGDEILVKVTDIDNQGRVNLSRKDV 691 >gi|307126791|ref|YP_003878822.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae 670-6B] gi|306483853|gb|ADM90722.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae 670-6B] gi|332077021|gb|EGI87483.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA17545] Length = 737 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 288/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ AV MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAVNMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] Length = 713 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 305/689 (44%), Positives = 445/689 (64%), Gaps = 15/689 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQER 66 E E AGR L LETG+ A+Q+ G+VL YG+TVVLAT D ++ DF PLTV ++ER Sbjct: 15 ETEIAGRTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVE--ADFLPLTVEFEER 72 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPG ++RRE RP E IL +RM DR IRPLF K +++E QVI+ V+ D ++ P Sbjct: 73 HYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNPP 132 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 ++ +AASAALMLS +P+EGPV +V + GQ VLNP L E ++ +LDL V+G++DA+ Sbjct: 133 DILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESALDLVVAGSRDAI 192 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 LMVE A ++ E+ ++ A+ F H E +P+++ ++A+ K P + + + EEE Sbjct: 193 LMVEAGAQEVDEETLVQALEFAHREMQPILDLQERMARELGK-PKMAWTPPETLPEEEKE 251 Query: 246 QM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMV--SYFSSEHSSWNEGE---IVSVFE 296 + +++ L K R + + + ++ + E + +EG+ S F+ Sbjct: 252 ALYRLALEKGLSQVLQTASKGERSRALSAFAESLILEALPRLEDGAPDEGKRPLYESAFD 311 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I + +R ++L++ R DGR + +R I +V +L R HGS++F RG+TQ + VTLGT Sbjct: 312 EIVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGT 371 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +D L + + F++HYNF P +TGEV R+ SRRE+GHG LA+RA+ VLP Sbjct: 372 GRDEQIIDDLGIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPSQ 431 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+V ++ ES+GSSSMATVC SLALMDAGVP+ PVAG+AMGLV + + +IL Sbjct: 432 EAFPYTIRVVGDVLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEKAVIL 491 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED LG MDFKVAGT G+TA+QMD K+GG+ ++ AL QA+ RL IL+ M Sbjct: 492 TDILGLEDALGDMDFKVAGTRQGVTALQMDNKVGGLPREVLKEALLQAREARLKILDLME 551 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 VL R L F PR+ + +P D+I VIG GGK +R + E+ G +V+I++DGT++I Sbjct: 552 MVLPAPRPSLKPFAPRILSLKVPVDKIGIVIGPGGKNVRAL-EELGVEVDIEEDGTIRIY 610 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS + + E A+ I +T +V +IY+G V ++ FGAF+ +GL+HISQ++ R Sbjct: 611 SSDMEKAEKAKARIEELTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAPGR 670 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V + D +K GD + VK+ D++GKI L Sbjct: 671 VKRVEDHLKVGDVIKVKVHRIDEKGKIDL 699 >gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina EX-H1] gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina EX-H1] Length = 709 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/692 (43%), Positives = 460/692 (66%), Gaps = 9/692 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V VE + P+ +ETG A+QS+GAV+ GET V V + DF PLTV+Y Sbjct: 9 VEKVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDY 68 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+TYA GKIPGG+++RE +PT EIL+SR+IDR IRP+F K + N+ + + D + Sbjct: 69 REKTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDK 128 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P V+++V ASAAL ++ PFEGPV G +V ++G++++NP ++ ++ +D+ V+GT+ Sbjct: 129 YDPDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTK 188 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKL 240 DA++MVE + ++SE+V+LDAI+F H E K + + +L KE I ID +D ++ Sbjct: 189 DAIVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEED-ERI 247 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + E+ +++E ++ + I +K R K+I ++ ++ + + E++ +++I + Sbjct: 248 KAELESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKIEIPEEKEKKAEVI--YKEIVS 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-RED 359 ++R +L +KVR+DGR + +R I + GL R HGS++F RG TQA V TLG E+ Sbjct: 306 NIMREKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEE 365 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 + G ++ FM+HYNF P +TGE APSRREIGHG LA RAI P++P +F Sbjct: 366 QIEESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEF 425 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VSEI ES+GS+SMATVCG+SL+L DAGVP+ K VAGIAMGL+K+ DD++IL+DI Sbjct: 426 PYVIRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAGT G+T++QMD+KI G+S+ I+ AL+QAK+ R+HIL+ M K + Sbjct: 486 LGDEDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAM 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +L P+V M + P++I +IG GK I+ I+++TG K+++D +G V+I + Sbjct: 546 PQPRPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVD 605 Query: 600 LAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + A+EMI R I D+ E+ ++Y G+V +V D+GAFV + L+H+SQ+S ER+ Sbjct: 606 GESADKAKEMIERLIMDI-ELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIR 664 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + +K GD + VK++D D+ G+ K+S+K V Sbjct: 665 SAKEKIKVGDILTVKVIDIDEMGRAKVSLKEV 696 >gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] Length = 731 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 296/690 (42%), Positives = 445/690 (64%), Gaps = 11/690 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + GR L +ETG IA+Q+ GAV+ Y +TVVL+T + + KD DFFPLTV+++E+ Y Sbjct: 8 FDLCGRNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHTPKD-SDFFPLTVSFEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+LRRE RP+E+ L +RMIDR IRPLF++ ++NE QV+ V+ D + S + Sbjct: 67 SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDCSAEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M AS AL +S +PF GP+ G V ++G++V+NP ++E + S + L V+GT+DA+ M Sbjct: 127 AAMFGASCALCISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSDIHLTVAGTKDAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246 VE A ++SE+ ++DA++FGH+ K + E ++ CAK + I +++ E+ + Sbjct: 187 VEAGAKEVSEEEMIDALMFGHDHIKMLCEFQEQIIAKCAKPKMEIKLDVVPEEIKAEIDE 246 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300 + K L + I K R +ID++ +M + F + + + ++ + +I A Sbjct: 247 LAKARLIEAVSIKLKLERYGKIDEITDEMAALFEAREYASEKLKDKTVKQVRAYCTEIVA 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ ++K+R DGR + +R +++QV LL R HGS++F RG+TQ + TLG D Sbjct: 307 NEVRRLISEEKIRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLGALGDN 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF P + GE RMG+P RREIGHG L RA+ V+P +FP Sbjct: 367 QIIDDLTEIETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSAVIPSEEEFP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDI 479 YT+R+V+E+ ES+GSSS A++C ++ALM AGVPI PVAG+AMGL+K D+ + +L+DI Sbjct: 427 YTIRLVAEVLESNGSSSQASICAGTMALMSAGVPIKAPVAGVAMGLIKTSDEHYTVLTDI 486 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+GR I+ M + Sbjct: 487 QGMEDHYGDMDFKVAGTPKGITALQMDIKIDGINRAILEEALAQAKKGRAEIMANMMAAI 546 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASS 598 SE R ++ + P++ M IP D+IR VIG GGK+I I+ K++I+DDG+V I S Sbjct: 547 SEPRPEVSPYAPKMYRMMIPVDKIREVIGTGGKMINQIIADCDNVKIDIEDDGSVVIYHS 606 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 I A E I I +V +IY G+VV++ FGAFV DGL+H+S++ +RV Sbjct: 607 DKNAIMKAAETINQILREAKVGEIYDGKVVRLEKFGAFVELFPGTDGLLHVSKIDYKRVE 666 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DV+K GD + V + + D++G++ +S + Sbjct: 667 KPEDVLKLGDVIKVIVTEIDEKGRVNVSHR 696 >gi|194398464|ref|YP_002037251.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae G54] gi|226702694|sp|B5E2A0|PNP_STRP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096717|sp|B2IMQ9|PNP_STRPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194358131|gb|ACF56579.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae G54] gi|301801461|emb|CBW34153.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae INV200] Length = 737 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM 15897] gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM 15897] Length = 712 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 305/705 (43%), Positives = 451/705 (63%), Gaps = 24/705 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +++ G+ +++E G +A+Q++G+ L Y +TVVL+T + KD DFFPLTV Y+E+ Y Sbjct: 8 MDFYGKKIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKD-VDFFPLTVTYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+L+RE RP+E+ L +RMIDR IRPLF+ ++NE QV+ V+ D E++P + Sbjct: 67 SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQEATPEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN--PRLDEDQGSLDLFVSGTQDAVL 186 +M+ AS AL +S +PF GP+ G V I+G++ +N P D + ++L V+GT+DA+ Sbjct: 127 AAMLGASIALCISDIPFNGPIAGVNVGLIDGEFTVNAGPE-DMARSEINLEVAGTKDAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKLE 241 MVE +A ++ E+ +L+A++FGH + K +I ++ + KE I +D S +E Sbjct: 186 MVEADAKEVDEETMLNALMFGHEKIKELIAFQEQIVEAVGKEKIDVPLFALDENIVSSVE 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNE-----GEIVSVF 295 M KE++ + IP K R ID+L K+V F E+++ E ++ V Sbjct: 246 ----AMAKEEMIKAISIPGKLERYAAIDELDAKVVESFEEKEYATVEEHDKTIKQVKMVL 301 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 D++ + VR ++ ++KVR DGR + VR + AQV LL R HGS++F RG+TQ + TLG Sbjct: 302 GDLEKEEVRRLITEEKVRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLG 361 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF P GE RMG+P RREIGHG L RA+ V+P Sbjct: 362 ALGEVQKIDGLGMEDQKRFMHHYNFPPYCVGETGRMGSPGRREIGHGALGERALRQVIPS 421 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+V+E+ ES+GSSS A++C S++ALM AGVPIS PVAG+AMGLVK G+++ I Sbjct: 422 ETEFPYTIRVVAEVLESNGSSSQASICASTMALMAAGVPISNPVAGVAMGLVKKGENYTI 481 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+ AL QAK R I++ M Sbjct: 482 LTDIQGMEDHLGDMDFKVAGTKNGICALQMDIKIDGITKEILQEALAQAKVARGQIMDCM 541 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVK 594 +SE R L + P+V +M I P+QI++VIG GG +I I+ E K++IDD+G V Sbjct: 542 MSAISEPRDHLSPYAPKVAMMKIEPEQIKDVIGKGGDMINKIIAESDNVKIDIDDEGNVT 601 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I S I+ A MI+ +T EV +I+ G+ V+V + AF+ +G +H+ ++ Sbjct: 602 IYHYSQEAIDHAMGMIKDLTRKVEVGEIFDGKAVRVEEKYAFIELFPGTNGFLHVKDVAW 661 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 +R K SDV+K GDTV VK+ D+G + +S K + KPIV Sbjct: 662 DRTNKVSDVIKLGDTVKVKVTQITDKG-VNVSRKAL---LPKPIV 702 >gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus] gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 714 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP + + SL +L V+GT+D Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +L E ++L+A++ GH + +I ++ KE ++ + L+ Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + DL+ + + EK R + +K+++++ + ++ E + + + E Sbjct: 243 EIIETYNADLQQAVQVEEKKAREAATEAVKEQVMAAYEERYAEDEEHDRIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R ++A++ L R HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+E+I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 A SDV++ G+ V VK++ DD+G+I SMK + KP Sbjct: 663 ANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702 >gi|149005700|ref|ZP_01829439.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP18-BS74] gi|147762640|gb|EDK69600.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP18-BS74] Length = 775 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 288/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ AV MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAVNMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] Length = 711 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 292/678 (43%), Positives = 432/678 (63%), Gaps = 5/678 (0%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 ETG A+Q++G++ G TVVL T ++ + Q FFPLTVNY E+ YA GKIPGG+ Sbjct: 21 FETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIPGGF 80 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 +RE++PT+NE L SR+IDR +RP+F ++NETQVI +V+ +D +SP +++M ASAA Sbjct: 81 FKREAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDMLAMNGASAA 140 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196 LM+S +PF GP+ G +V ++G+ ++NP D ++ +++ ++GT DA++MVE + +S Sbjct: 141 LMISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDMNIILAGTDDAIVMVEAGMSVVS 200 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVS 255 E V++A+ FGH+ K ++ +++ KE S + +L +E + + L+ + Sbjct: 201 EAEVIEALQFGHDNIKKLVAKQNEMVAALGKEKFEYTSFCVADELVDEAMAELSDKLKEA 260 Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 IP K + + +D + ++ + + ++ +++ +++ K R +D K R Sbjct: 261 LVIPAKLEKYEALDKIGEEYLEAMKEKLGEDDFDAELYKNIYHEVEKKAFRDFTIDTKTR 320 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373 +DGR +RDI + LL HGS LF RG+TQA+VV TLGT+ D Q +D++ G + Sbjct: 321 IDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKKR 380 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 FM+HYNF P GEV + P RREIGHG LA R++ VLP FPYT+RIVSE+ ES+ Sbjct: 381 FMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSEVLESN 440 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDEDHLGHMDFK 492 GSSSMATVCG LALMDAGVPI PVAG+AMGL+ +G D F +LSDI G EDHLG MDFK Sbjct: 441 GSSSMATVCGGCLALMDAGVPIKSPVAGVAMGLIYEGADRFAVLSDILGTEDHLGDMDFK 500 Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552 V GT GITA+QMD+KI G+S+ ++ AL QAK R++IL +M+ + +L PR Sbjct: 501 VTGTKDGITALQMDIKIEGLSQELLETALGQAKEARMYILGKMTDHMPVPNEELAPTAPR 560 Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612 M I P++I VIG GGK+I+ I+E++GA ++IDD GT+ I ++ A IE A + Sbjct: 561 YVTMKINPEKIGMVIGPGGKMIKSIIEESGAAIDIDDTGTINIFAADKASIEIAVRRVNE 620 Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I E +Y V K+M++GAFV ++ L+H+SQ S ER+ +D + GD V V Sbjct: 621 IVAEVEDGAVYDATVKKMMEYGAFVELIPGQEALLHVSQYSHERINSIADYLNVGDKVQV 680 Query: 673 KLLDFDDRGKIKLSMKVV 690 K++ D G+ KLS KV+ Sbjct: 681 KVVGKDPNGRFKLSRKVL 698 >gi|301799640|emb|CBW32198.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae OXC141] Length = 737 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E++ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|149021550|ref|ZP_01835605.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP23-BS72] gi|147930246|gb|EDK81231.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP23-BS72] Length = 737 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 441/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI +PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKEPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1087] Length = 733 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G Q+ Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|148983970|ref|ZP_01817289.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP3-BS71] gi|147924117|gb|EDK75229.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP3-BS71] Length = 775 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E++ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|237650139|ref|ZP_04524391.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae CCRI 1974] gi|237821670|ref|ZP_04597515.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae CCRI 1974M2] Length = 737 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V++ Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|168490522|ref|ZP_02714665.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC0288-04] gi|182683523|ref|YP_001835270.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae CGSP14] gi|303253917|ref|ZP_07340038.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS455] gi|303260083|ref|ZP_07346056.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae SP-BS293] gi|303261267|ref|ZP_07347215.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae SP14-BS292] gi|303263932|ref|ZP_07349853.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS397] gi|303265923|ref|ZP_07351819.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS457] gi|303268305|ref|ZP_07354102.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS458] gi|182628857|gb|ACB89805.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae CGSP14] gi|183575025|gb|EDT95553.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC0288-04] gi|302599093|gb|EFL66118.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS455] gi|302637401|gb|EFL67888.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae SP14-BS292] gi|302638778|gb|EFL69240.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae SP-BS293] gi|302642143|gb|EFL72493.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS458] gi|302644507|gb|EFL74758.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS457] gi|302646337|gb|EFL76563.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae BS397] Length = 775 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 694 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 293/692 (42%), Positives = 435/692 (62%), Gaps = 12/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T ++ + + ETG+IARQ++GAVL GET++ T D L G+DF PL V+YQ Sbjct: 4 RTTRVKVGEQEIVFETGKIARQANGAVLVRSGETILFNTACADYDLAPGEDFLPLRVDYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ + GK G+++RE RP+E E L+SR+IDR +RP+F Y NETQV+ V +D + Sbjct: 64 EKFSSAGKTVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 +P +++ ASAAL++S +P PV +V I G++V+NP ++ + S LDL ++GT+D Sbjct: 124 APEPLAICGASAALVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLILAGTED 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFS 238 AVLM+E + L+E+ +L+AI GH K + E + K K + + F Sbjct: 184 AVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPKTLHTLRPLPQDVFH 243 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFE 296 +EE ++++ LR+ EK R + + +K + E + ++ + + Sbjct: 244 SVEEIAKPLLEQALRIK----EKQKREEALGAVKSAVQQKLLPEDGEPLFPAKDVATALK 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ +K +R ++L++ VR DGR S +R I + G+L R HGSSLF RG+TQ++ V TLG Sbjct: 300 EVSSKYMREMILNENVRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGG 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q + L G F + Y F P + GEV R+G+P RRE+GHG+LA RA+ +LP Sbjct: 360 ESMAQRFEDLDGEGSRTFYLQYFFPPFSVGEVGRIGSPGRREVGHGKLAERALQAILPPK 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+ S ITES+GSSSMATVCG LA+M+AGVP+ +PVAGIAMGL+ + + FIIL Sbjct: 420 EAFPYTIRLESNITESNGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERFIIL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G ED LG MDFK+ G GITA QMD+K+ GI+ +IM AL+QAK+GR+HIL +M Sbjct: 480 SDILGIEDALGDMDFKITGDAEGITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKML 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +V + ++ + PR+E M I P +I VIG GGK IR I+E +G +++I+DDG + IA Sbjct: 540 EVCPTHKEEMSVYAPRIETMQIKPSKIATVIGPGGKQIRAIIEASGVEIDINDDGLISIA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS+L IE A+ MI +T E+ K+Y G++ + FG FV ++GL HIS+ R Sbjct: 600 SSNLEGIEKAKAMIVGLTSDVEIGKVYTGKIANIAPFGIFVEILPGKEGLCHISEFDNTR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + +D VK GD + VK+L+ ++RG++KLS K Sbjct: 660 INNLNDYVKIGDMITVKVLEINERGQLKLSRK 691 >gi|149002268|ref|ZP_01827210.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP14-BS69] gi|147759583|gb|EDK66574.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP14-BS69] Length = 775 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V++ Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|37522718|ref|NP_926095.1| polynucleotide phosphorylase/polyadenylase [Gloeobacter violaceus PCC 7421] gi|81709200|sp|Q7NGM0|PNP_GLOVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|35213720|dbj|BAC91090.1| polyribonucleotide nucleotidyltransferase [Gloeobacter violaceus PCC 7421] Length = 713 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 300/691 (43%), Positives = 443/691 (64%), Gaps = 17/691 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + L TG +A+ + G+VL GET VL T ++G DFFPL V+Y+ER YA G+ Sbjct: 12 GREIGLSTGVLAQLAGGSVLVQSGETAVLVTATMASKPREGIDFFPLLVDYEERLYAAGR 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG ++RRE RP E IL +R+IDR +RPLF K + N+ Q++ V+ D+ P +++++ Sbjct: 72 IPGSFVRREGRPPEKAILAARLIDRPLRPLFPKGFINDVQIVATVLALDMNVPPDILAIL 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS A ML+G+PF+GPV +V + +++NP E ++G LDL V+GT++ ++MVE Sbjct: 132 GASTATMLAGIPFDGPVAATRVGLMGDDFIINPTYKEIEEGELDLVVAGTKNGIMMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEEEMSQ 246 AN L E+ ++DAI +G+ + ++ A + + EP+ D S +EE+ S+ Sbjct: 192 ANCLPEEDIIDAIDYGYEAVQAMLTAQEEFIRDLKIEPMAFVAPANDPVLVSFVEEKASE 251 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSVFEDI 298 + E LR F K R ++D ++ ++ + F+ E ++ N ++ ++F+ Sbjct: 252 AVAEVLR--SFELSKDERDAKLDAIEAELGTTFAGLGEEDPLREKAAANASKLPALFKST 309 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K++R +L + R+DGR + VR IS+ V ++ R HG LF RG TQ + VVTLGT Sbjct: 310 TKKLMRKQILVEGKRVDGRSLDEVRPISSAVRVIPRVHGCGLFTRGTTQVLSVVTLGTAS 369 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L +M HYNF + GEV + RRE+GHG LA RAI P+LP+ Q Sbjct: 370 DAQELDDLHPDDSKRYMHHYNFPGFSVGEVKPLRGVGRREVGHGALAERAIVPILPEHEQ 429 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSE+ S+GS+SM +VC S+LALMDAGVPI +PV+G+AMGL+K+GD+ IL+D Sbjct: 430 FPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPIREPVSGVAMGLIKEGDEVRILTD 489 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+KI GI+ I+ A+QQ+K GRLHIL +M Sbjct: 490 IQGIEDFLGDMDFKVAGTRDGITALQMDIKIQGITLQILEAAIQQSKAGRLHILEKMLIA 549 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R++L + PR+ + IP D I VIG GGK I+ IVE+TGAKV+I+DDGTV ++S Sbjct: 550 IDKPRVELSPYAPRLLTLKIPVDMIGLVIGPGGKTIKRIVEETGAKVDIEDDGTVVVSSI 609 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERV 657 A+ AA+++I +T EV+K+Y G V +++ + GAFV ++GLVHISQL+ RV Sbjct: 610 DGAKALAAKQIIEGMTRTVEVDKVYLGTVTRIIPNLGAFVEVMPGKEGLVHISQLAEHRV 669 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D + GD V VK+ + D +G+I L+ + Sbjct: 670 RKVEDELNVGDEVVVKVKEIDQKGRINLTRR 700 >gi|15902560|ref|NP_358110.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae R6] gi|116515732|ref|YP_816014.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae D39] gi|15458089|gb|AAK99320.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae R6] gi|116076308|gb|ABJ54028.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae D39] Length = 775 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|225858425|ref|YP_002739935.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae 70585] gi|254782737|sp|C1C5V9|PNP_STRP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225720166|gb|ACO16020.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae 70585] gi|332202469|gb|EGJ16538.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA41317] Length = 737 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|183603103|ref|ZP_02712475.2| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae SP195] gi|183603451|ref|ZP_02716891.2| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC3059-06] gi|221231415|ref|YP_002510567.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae ATCC 700669] gi|254782738|sp|B8ZMC0|PNP_STRPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|183572923|gb|EDT93451.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae SP195] gi|183577007|gb|EDT97535.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC3059-06] gi|220673875|emb|CAR68380.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae ATCC 700669] gi|332074399|gb|EGI84875.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA17570] Length = 737 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. equi 4047] gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi subsp. equi 4047] Length = 714 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 284/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A++++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKRANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP + + SL +L V+GT+D Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +L E ++L+A++ GH + +I ++ KE ++ + L+ Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + DL+ + + EK R + +K+++++ + +++ E + + + E Sbjct: 243 EIIETYNADLQQAIQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R ++A++ L R HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 FPY +R+V+E+ ES+GSSS A++C +LALM AGVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 AFPYAIRLVAEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+E+I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 SDV++ G+ V VK++ DD+G+I SMK + KP Sbjct: 663 TNVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702 >gi|187611307|sp|Q8DQT0|PNP_STRR6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611312|sp|Q04LT4|PNP_STRP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 737 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus proteolyticus MRP] gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus proteolyticus MRP] Length = 810 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 305/682 (44%), Positives = 441/682 (64%), Gaps = 10/682 (1%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 GR L +ETGR+A+ G+V YG+T++L T R K DF PLTV ++E+ YAVG Sbjct: 11 GGRELTIETGRLAKLVSGSVTLRYGDTLLLVTA-QARQEKSTLDFLPLTVEFEEKHYAVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPG + RRE RP E IL +R+ DR IRPLF K Y++ETQVII V+ D +++P V+ Sbjct: 70 KIPGSFSRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADQQNAPDVLGP 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDAVLMVEL 190 + A+AAL +S +P+ GP +V ++GQ+V+NP + ++ LDL V+GT+DAV+MVE Sbjct: 130 IGAAAALSISDIPWGGPTACVRVGRVDGQFVINPTAVQLERSDLDLVVAGTRDAVMMVEA 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248 A ++ED ++DAI F H E + V++ I + +E + D + L E+++ Sbjct: 190 GAQVVAEDELVDAIEFAHAEMQGVLDLIDTMRAELGREKFNYLADGELAPDLVPELAEAA 249 Query: 249 KED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIVSVFEDIQAKVV 303 + LR + +K R + L+ +++ E ++ E+ + F ++ + + Sbjct: 250 RASGLRDALLTLKKQDRSANLKALRDRLIQDRVPEGEVDGAAARIEELKAAFSKVEKQEL 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L++ +R DGRD+ TVR I +V L R HGS++F RG+TQ + V TLGT DE + Sbjct: 310 RRLILEEDLRADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGTERDEILI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + F++HYNF P +TGEV RMGA SRRE+GHG LA+RA+ VLP +FPY + Sbjct: 370 DDLTEDTGDKFLLHYNFPPYSTGEVKRMGAQSRREVGHGNLAKRALSAVLPPFEEFPYVI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V E+ ES+GSSSMATVC +L+LMDAGVPI PVAG+AMGLV +GD + IL+DI G E Sbjct: 430 RVVGEVLESNGSSSMATVCSGALSLMDAGVPIKAPVAGVAMGLVMEGDRYRILTDILGLE 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKV GT G+TA+QMD+KIGGI+ IM AL QAK RLHIL +M++VL R Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKIGGITPAIMREALAQAKEARLHILGKMAEVLPAPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L PR+ M I P+ I VIG GGK +R + E GA+V I++DG V+I S++ Sbjct: 550 AELSPTAPRIISMRIDPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGLVRIFSANGEAA 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +A +E I ++T P+V ++G VVK+ FGAF++ +DG++HISQ+S ER+ +V Sbjct: 609 KAVQERITAVTYQPKVGDEFEGTVVKIAPFGAFINLFPGQDGMLHISQMSEERIEMVEEV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685 + V VK+++ D+RGKI L Sbjct: 669 LLLNQKVRVKIVNIDERGKIDL 690 >gi|148992301|ref|ZP_01822024.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP9-BS68] gi|149010792|ref|ZP_01832163.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP19-BS75] gi|147765273|gb|EDK72202.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP19-BS75] gi|147928927|gb|EDK79939.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP9-BS68] Length = 775 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] Length = 716 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 291/704 (41%), Positives = 441/704 (62%), Gaps = 13/704 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H V P+ +ETG++A+ +DGAV GET+V + V ++K+GQDFFPLTV+Y Sbjct: 3 IHNVTAHIGAHPITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ AVGK PGGY +RE RP+E EIL RM DR +RPLF K Y +TQ+I ++ D E Sbjct: 63 REKAAAVGKFPGGYFKREGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P ++ + ASAALM+S +PF GPV +V +NGQ++ NP + S LDL G Sbjct: 123 VDPDILFINGASAALMVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLVYVGNA 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSK 239 V+M+E +++ E+ + A+ F E ++ +LA+ K + + KD + Sbjct: 183 TDVIMIEGAGDEVPEEQFIAALHFAQTEVSKIVALQQELAQKVGKAKRQAALFTVKD--E 240 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L E + + + + + K R K I LK ++ + +++ + EI F+ +Q Sbjct: 241 LMEVAYAVAGDRIEAAIYNKSKVARQKAIAALKDEVSAAIIAKYPEATKFEISQAFDYLQ 300 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K R +LDK+ R DGR + +RD+SA+VGLL R+HGS+LF RG+TQA+ + TL ++ Sbjct: 301 KKAFRVSILDKQTRCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADE 360 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D +G + F++HYNF P + GE R G+P RREIGHG LA R++ PV+P + Sbjct: 361 AQELDGYTGGETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTK 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----KDG--DD 472 FPY +R+ SE+ ES+GS+SMA+VC LAL+DAGVP+ K VAGI+ GLV DG D Sbjct: 421 FPYAIRVSSEVMESNGSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVTEFRADGQLDR 480 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI G EDH G MD+K+ GT G+T Q+D+K+ GI +M A+ + + R+ +L Sbjct: 481 YTMLTDIIGSEDHFGDMDWKLCGTRDGVTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVL 540 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + M LS+ R +L ++ PR+E + I PD+I +IG GGK I+GIV +TGA++NI+DDG+ Sbjct: 541 DVMDSALSQPRTELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAEINIEDDGS 600 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I S++ + A+++I +T V ++Y+G+VV + +FG FV +DG+VHIS+L Sbjct: 601 VHIYSNNGDSLLRAKQIIEGMTKEISVGEMYQGRVVTIKEFGCFVEVLPGKDGMVHISEL 660 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 + RV + DVVK GD +WVK + D++G++KLS K + G+ Sbjct: 661 ADFRVNRVEDVVKMGDVIWVKCIGVDEKGRVKLSRKAAMKERGE 704 >gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia 3_1_6] gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia 3_1_6] Length = 745 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 308/686 (44%), Positives = 440/686 (64%), Gaps = 11/686 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + LETGR+A Q+ G+V G TVVL TV + L + FFPLTV Y ER YA G+ Sbjct: 16 GKEIILETGRVATQAHGSVTIQCGGTVVLVTVC-SQPLDFDRGFFPLTVEYSERMYAAGR 74 Query: 73 IPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 IPG + RRE RP+E E L+SR+IDR IRPLF K + QV+ +V+ D E+ V+S+ Sbjct: 75 IPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQENESDVLSI 134 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 AASAA+MLS LPF V G ++ INGQ++LNP + E + L++ + + DA++MVE Sbjct: 135 TAASAAVMLSPLPFAEAVAGGRIGRINGQFILNPTVKEMAESDLNIVFAASADALVMVEG 194 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLEEEMSQMI 248 EA + EDV++DA+ +G E +P++EA KL ++ K + + D + L Sbjct: 195 EATFVPEDVIIDALEWGRKEIQPLVEAQVKLRELAGKAKMAFTPQEDDAALLARIEELAA 254 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI----QAKVVR 304 L + +PEK R +K+K+V ++ + + + +S DI + KVVR Sbjct: 255 GAGLEAAMRVPEKMARKDARKLVKEKIVEALKADPTYGEDEKALSSVGDIIGHIEKKVVR 314 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +LD+ R+DGRD++TVR I Q G+L R HGS+LF RG+TQ++ V TLG+ D Q +D Sbjct: 315 KRILDEGTRIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLGSSTDNQRMD 374 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 SL+G FM+HYNF P + GEV + SRREIGHG LA +A+ P++P FP+T+R Sbjct: 375 SLTGDVTKTFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKALKPIIPAGDGFPFTVR 433 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +V+E ES+GSSSMA VCG L+LMDAGVPIS PVAG+AMGL+K+GD+FI+L+DI GDED Sbjct: 434 VVAETLESNGSSSMAAVCGGCLSLMDAGVPISDPVAGVAMGLIKEGDNFIVLTDILGDED 493 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFK+AGT G+TA+QMD+KI G++ IM A++QA RLHIL EM K + R Sbjct: 494 ALGDMDFKIAGTAEGVTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGEMKKAIDGPRA 553 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L ++ P+ + + P+ IR +IG GGK I+ I TGA V+I+D G + I + + +E Sbjct: 554 ELSKYAPQHAEVFVNPEVIRMIIGPGGKNIKAITAATGASVDIEDSGRISIFAPTAESME 613 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+E+++ P++ K Y G+V KV++ GA V + LVHISQL T RVA+ SDV Sbjct: 614 QAKELVQYYDQRPDLGKNYMGKVRKVLEIGAIVEIMPNVEALVHISQLDTSRVAQASDVA 673 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 G+ + VK+++ + +I+ S K V Sbjct: 674 HLGEDMLVKVIEING-DRIRASRKAV 698 >gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 714 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 284/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP + + SL +L V+GT+D Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 A+ MVE A +L E ++L+A++ GH + +I ++ KE ++ + L+ Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + DL+ + + EK R + +K+++++ + +++ E + + + E Sbjct: 243 EIIETYNADLQQAVQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVTEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R ++A++ L HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPMVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+E+I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 A SDV++ G+ V VK++ DD+G+I SMK + KP Sbjct: 663 ANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702 >gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK405] gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1057] Length = 733 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHQAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQVEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIGATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I S+ +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIASLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] Length = 693 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 297/699 (42%), Positives = 455/699 (65%), Gaps = 19/699 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ + ++AG+ LK++ G++A Q+ GA L YGET VL TVV K+ DFFPLT Sbjct: 1 MRQTYSFKKDFAGKTLKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLFSK ++NE QVI+ V+ + Sbjct: 61 VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179 D E+S + S++ AS A+ML+GLPF+GP+ +V + ++ +NP + + LDL V+ Sbjct: 121 DHENSTDIPSIIGASCAIMLAGLPFKGPIGAVRVGWDGKEWYINPSVALSNSLLLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 GT+DAVLM+E + ++ E++ L+ II H + VI ++ M P+ + + F Sbjct: 181 GTKDAVLMIEGDGKEVPEEIFLEGIIRAHEQIGEVINFQEEILSMV--NPVPFNYEPFVV 238 Query: 238 -SKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 L++++ + + D +R + F P K R K ++DLKK+++ +F + GEI + Sbjct: 239 NENLKKDVLEYVTVDQIRDAIFTPSKSERQKALEDLKKRVIEHFKPIY-----GEITAQI 293 Query: 296 EDI---QAKVVRT-VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++I +AK + T V+L++K R+DGR +R +S +VG+L R HGS+LF RG+TQ + V Sbjct: 294 DEIINQEAKAILTKVILEEKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSV 353 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 VTLG E EQ ++S+ ++ ++ HYNF P + GE + P RREIGHG LA RA+ P Sbjct: 354 VTLGAGE-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERALLP 412 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 ++P+ +FPYT+R+VSE+ S+GS+SMA+VCGSSL+LMDAGVPI VAG+AMGL+K+G+ Sbjct: 413 LIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGE 472 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F +L+DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S I+ L+QAK R I Sbjct: 473 KFEVLTDIQGLEDALGGMDFKIAGTKNGITAVQLDIKVDGLSYEIIEKTLKQAKEARYQI 532 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L+ M K +S+ R ++ + PR+ ++ I P++I ++IG GK I+ I+E+T +NI +G Sbjct: 533 LDIMEKTISQPRPEISPYAPRIMVLEINPNKIGDLIGPSGKNIKKIIEETHTTINIKPEG 592 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I++ E A +M++ T + I+ G+V++V D+GAFV + GL+HIS+ Sbjct: 593 LVYISAPDQESAEKAAQMVQEYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHISK 652 Query: 652 LSTERVAK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 T K T + + GD + +K+ D G+I LS K Sbjct: 653 YKTTGTGKNQTREEINLGDEILIKVDSIDPSGRISLSRK 691 >gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Dehalococcoides sp. VS] gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Dehalococcoides sp. VS] Length = 720 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/701 (41%), Positives = 452/701 (64%), Gaps = 6/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ E GR L +E+G+IAR +D AV Y +T +L T+ + ++G DF PLT Sbjct: 1 MITANSFERTIGGRKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++Y+ER YA GKIPGG++RRE RP+E IL R+ DR +RPL K ++NE Q+II V+ Sbjct: 61 IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ + +V AS L +S +P+EGPV ++V YING++VLNP + +Q +DL V Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQMDLVVV 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 T+ AV+M+E + ++ ED+++ AI F H + +I+ ++ KE + + + Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++ ++ +K + + +K +R ++ L+ ++V + ++ EG+I++ ++ Sbjct: 241 EVKAAVAAFVKGRVNEALSYQDKTLRENAVEALQSELVEALAE---TYAEGDILAAYDKE 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R+ +L+K +R++GR + +R + A+ G+L R HGS+LF RGDTQ + V TLG+ + Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQ 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D LS FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP + Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477 FPYT+R+V+++ S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+ + D + ++ Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED+ G MDFKVAGT GITA+Q+DMK+ GIS +++ A+ QAK R +IL M K Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYNILEVMDK 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L++ + +L + PR+ ++I P +I +VIG GGK IR I+EQT V+I++DGTV I + Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A + A ++I +T E +Y G+V ++M FGAFV ++G+VHIS+L+ RV Sbjct: 598 TDEASAQKAIKIIEDLTKDIEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K D+VK GD + VK+ + D +G++ LS +V+ PI Sbjct: 658 EKVEDIVKVGDEITVKVTEIDSQGRVNLSRRVILNPNAVPI 698 >gi|322392303|ref|ZP_08065764.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris ATCC 700780] gi|321144838|gb|EFX40238.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris ATCC 700780] Length = 751 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/700 (40%), Positives = 438/700 (62%), Gaps = 8/700 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H + +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+ Sbjct: 21 HVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 79 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 80 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 139 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 S + +M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ Sbjct: 140 SAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKH 199 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSE+++L A++ GH K +I ++ KE ++ + L+ Sbjct: 200 AINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQA 259 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297 E+ + DL+ + + EK R +K ++ + + ++++ E ++ + E Sbjct: 260 EIIEAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQ 319 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A V + R HGS LF RG TQA+ ++TL Sbjct: 320 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAGVDFVPRVHGSGLFTRGQTQALSILTLAPM 379 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 380 GETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 439 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+ Sbjct: 440 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLT 499 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 500 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILAEALAQAKKARFEILDVIEA 559 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 560 TIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 619 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I +E+I + +V+++Y +VV++ FGAFV+ D LVHIS++S R Sbjct: 620 SDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMSWTRT 679 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 + DVV GD V VK++ D++G+I SMK + KP Sbjct: 680 NRVEDVVAIGDEVDVKIIKIDEKGRIDASMKALLPRPPKP 719 >gi|225860589|ref|YP_002742098.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230931|ref|ZP_06964612.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254667|ref|ZP_06978253.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|254782741|sp|C1CQ76|PNP_STRZT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225728353|gb|ACO24204.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae Taiwan19F-14] gi|327390327|gb|EGE88668.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA04375] Length = 737 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK330] Length = 733 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ + Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQAEIIAVY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + K+R DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK160] Length = 733 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|73748737|ref|YP_307976.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp. CBDB1] gi|289432763|ref|YP_003462636.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT] gi|123759782|sp|Q3ZXV6|PNP_DEHSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|73660453|emb|CAI83060.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. CBDB1] gi|288946483|gb|ADC74180.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT] Length = 720 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/701 (41%), Positives = 455/701 (64%), Gaps = 6/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ E GR L +E+G++AR +D A+ Y +T +L T+ + ++G DF PLT Sbjct: 1 MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++Y+ER YA GKIPGG++RRE RP+E IL R+ DR +RPL K ++N+ Q+II V+ Sbjct: 61 IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ + +V AS L +S +P+EGPV +++ YING++VLNP + + S LDL V Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 T+ AV+M+E + ++ ED++++AI F H + +I+ ++ KE + + + Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++ ++ +K + + +K R ++ L+ ++V+ S ++ EG+I++ ++ Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R+ +L+K +R++GR + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ + Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D LS FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP + Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477 FPYT+R+V+++ S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+ + D + ++ Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED+ G MDFKVAGT GITA+Q+DMK+ GIS +I+ A+ QAK R +IL+ M K Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L++ + +L + PR+ + I P +I +VIG GGK IR I+EQT V+I++DGTV I + Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A + A ++I +T E IY G+V ++M FGAFV ++G+VHIS+L+ RV Sbjct: 598 TDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K D+VK GD + VK+++ D++G++ LS +V+ PI Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698 >gi|298502383|ref|YP_003724323.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae TCH8431/19A] gi|298237978|gb|ADI69109.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae TCH8431/19A] Length = 754 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 27 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 86 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 205 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 265 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 325 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 626 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 686 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719 >gi|315221320|ref|ZP_07863243.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus F0211] gi|315189679|gb|EFU23371.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus F0211] Length = 726 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/690 (41%), Positives = 439/690 (63%), Gaps = 14/690 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+ L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGKELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y+NG+ V+NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI- 248 A +LSE+V+L+A++ GH K +I ++ + KE ++ +++EE+ I Sbjct: 189 SGAKELSEEVMLEALLKGHEAVKELIAFQEEIVAVVGKEKAEVE---LLRVDEELQTEIV 245 Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 DL+ + + EK R +K ++++ + +++ E ++ + E ++ Sbjct: 246 AGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYADHEEFDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + A++ L R HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP FP Sbjct: 366 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEDFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + + Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIERTIP 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 APRTELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I A+E+I ++ +V+++Y +VV++ FGAFV+ D LVHIS+++ R K Sbjct: 606 DAINRAKEIITALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNKV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+V+ GD V VK++ D++G++ SMK + Sbjct: 666 EDLVQLGDEVDVKVIKIDEKGRVDASMKAL 695 >gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii str. Challis substr. CH1] gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 728 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 434/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDVMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALDQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V V ++ D +G++ SMK + KP Sbjct: 669 VQIGDEVDVMVIKIDAKGRVDASMKALLPRPPKP 702 >gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis SK36] gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus sanguinis SK36] Length = 733 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/691 (41%), Positives = 438/691 (63%), Gaps = 16/691 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244 A +LSED++L+A++ GH K +I E ++ + K A+ E + +D + L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKGKAEVELLHVDEE----LQAEI 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQ 299 DL+ + + EK R +K ++ + + +++ E ++ + E ++ Sbjct: 245 VAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQME 304 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Sbjct: 305 HAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGE 364 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +F Sbjct: 365 TQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEF 424 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDI 484 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATI 544 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 545 PAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSD 604 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R Sbjct: 605 QDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNN 664 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVV+ GD V VK++ D +G++ SMKV+ Sbjct: 665 VEDVVQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|322388265|ref|ZP_08061869.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis ATCC 700779] gi|321140937|gb|EFX36438.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis ATCC 700779] Length = 757 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/700 (40%), Positives = 440/700 (62%), Gaps = 8/700 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H + +AGR L +ETG++A+Q++GAV+ YGE+ VL V + + G DFFPL VNY+ Sbjct: 21 HVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 79 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 80 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 139 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF+GP+ G QV Y++G+ ++NP ++ + SL +L V+GT+ Sbjct: 140 SAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAESSLLELTVAGTKH 199 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSE+++L A++ GH K +I ++ KE V++ +L+ Sbjct: 200 AINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAVVELLHVDEELQA 259 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297 E+ + DL+ + + EK R +K ++ + + ++++ E ++ + E Sbjct: 260 EIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYQEKYANHEEFDRIMRDVAEILEQ 319 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A V + R HGS LF RG TQA+ ++TL Sbjct: 320 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFVPRVHGSGLFTRGQTQALSILTLAPM 379 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 380 GETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 439 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+ Sbjct: 440 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLT 499 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 500 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 560 TIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 619 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 620 SDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRT 679 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 D+V+ GD V VK++ D++G++ SMK + KP Sbjct: 680 NNVEDLVQIGDFVDVKVIKIDEKGRVDASMKALLPRPPKP 719 >gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK355] Length = 733 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYTDHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|172079486|ref|ZP_02707776.2| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC1873-00] gi|172043773|gb|EDT51819.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC1873-00] gi|301793785|emb|CBW36174.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae INV104] gi|332203753|gb|EGJ17820.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA47368] gi|332204610|gb|EGJ18675.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA47901] Length = 737 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++ Q ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDDQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK353] Length = 733 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 287/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F + ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT+DA+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQAEIVAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 689 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 311/684 (45%), Positives = 441/684 (64%), Gaps = 7/684 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E++ AG+ +E+G++A+Q+ G+ GETVVL TVV + K G DF PLTV+Y+ERT Sbjct: 7 EVDVAGKKFIVESGKVAKQAGGSCTVRIGETVVLVTVVSLKEPKVGIDFMPLTVDYRERT 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE+RP + E+L+SR+IDRSIRPLF + Y+N+TQ+ V+ HD E+ Sbjct: 67 YAAGKIPGGFFKRETRPRDGEVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHDGENDSE 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +++ AS AL S LPF P+ ++ INGQ ++NP + E + S LDL VSGT++A+ Sbjct: 127 MAAILGASIALYTSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLVVSGTEEALT 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDF-SKLEEEM 244 MVE A +LSE +L+A+ N ++ I K + AK IV++ S L+ ++ Sbjct: 187 MVEAGARELSEAEMLEAL----NLAGKTLKGICLFQKTLPAKTKIVVEQPQHNSLLKADI 242 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 +S I EK R D KK + S ++ I ++ EDI + R Sbjct: 243 EAEAVSKAEMSVVIKEKCEREFFWDSFKKDISSRLLEKYPEELPSTIDAILEDIFYQKAR 302 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++L+KK+R DGR E +R I+ + G+L R HGSSLF RG TQA+V VTLG+ D Q +D Sbjct: 303 DLVLNKKIRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTLGSPCDMQVID 362 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + FM+HYNF ATGE R A SRREIGHG LA++A+ ++P F Y +R Sbjct: 363 ELIVEYKERFMLHYNFPGFATGEPKRDRAVSRREIGHGNLAKKALKHIMPDGEDFGYAVR 422 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 IVS+I ES+GSSSMA+VCG SLAL +AGVP+ AG++MGL+K+G ++IL+DI+G ED Sbjct: 423 IVSDILESNGSSSMASVCGGSLALFNAGVPVKSSCAGVSMGLMKEGGSYVILTDITGMED 482 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT GITA+QMD+KI G++ I+ AL+QAKRGR IL++M V+S + Sbjct: 483 HLGDMDFKVAGTRKGITALQMDIKILGLTTEIVAQALEQAKRGRFFILDQMDAVVSAPKN 542 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 L + PR+ + IP ++I +IG GGK IR I E K++I++ G V I+ ++ Sbjct: 543 DLSNYAPRMITLTIPQNKIGELIGPGGKNIRKIQEDNNVKIDIEETGRVFISGVESDGVK 602 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 +A+E + +T EV KIYK +V K+M FGAF ++GL+HISQLS + DVV Sbjct: 603 SAKEYVECLTVEAEVGKIYKSRVTKIMAFGAFAEILPGKEGLIHISQLSNRHTKRVEDVV 662 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 KEGD V VK+++ D +G+I LS+K Sbjct: 663 KEGDEVKVKVIEIDKQGRINLSIK 686 >gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88] gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88] Length = 705 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 300/692 (43%), Positives = 442/692 (63%), Gaps = 13/692 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H +E + AGR LK+E G++ S+ A+L +YG+TVVL + +DG DFFPL+V Y+ Sbjct: 3 HVLETDIAGRTLKVEYGKVGMLSNCAILVSYGDTVVLINANASKEPRDGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE RPTEN IL +R IDR +RPLF K Y+N+ Q++ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P +++M AS AL LS +PF PV V ING ++LNP + + S L+L VS T++ Sbjct: 123 QPDILAMNGASLALCLSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE----AISKLAKMCAKEPIVIDSKDFSK 239 V+M+E A ++ ED + +AI FG +C+ ++E A+ + K + + + KD K Sbjct: 183 RVMMIEAGAEEVDEDTMYNAIRFGFEQCQKIVEFQEEAMRRFGKEKVEPVLYLVDKDIEK 242 Query: 240 LEEEMS-QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E + M+KE + +I +K +R ++ID++K+K+ F ++ N+ +I + Sbjct: 243 EVREFAFPMVKE----AMYISDKDLRNEKIDEVKEKVKEEFEEKYPE-NDSDISEALYKM 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +VVR ++L +K R D R + +R IS +VGLL RTHG+ LF RG TQ + T+G Sbjct: 298 QKEVVRNMILREKRRPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLA 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +DS+ + +M HYNF + GE + P RREIGHG LA +A+ P++P Sbjct: 358 DVQILDSIEDEEFKRYMHHYNFPSYSVGETRPLRGPGRREIGHGALAEKALEPLIPSEED 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV + D + IL Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLTEEKIL 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GITA+Q+D KI G+S+N + L +AK R++IL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L + PRV M I P++IR+VIG GGK I I+ +TG +++I +DG + + Sbjct: 538 ECIPEHRAELSPYAPRVYTMTIAPEKIRDVIGAGGKTINKIIGETGVQIDIKEDGKIYVM 597 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A +MI +T E +IY G+V + +FGAFV ++GLVHIS+L R Sbjct: 598 SSDSVGANRALKMINDLTKDVEAGEIYLGKVTRTTNFGAFVEILPGKEGLVHISKLDFTR 657 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K DVV GD + VK+ D DD+G+I LS + Sbjct: 658 VNKVEDVVSVGDEILVKVTDIDDQGRINLSRR 689 >gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1059] Length = 733 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ + Sbjct: 189 SGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAVY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] Length = 711 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/683 (42%), Positives = 441/683 (64%), Gaps = 3/683 (0%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 ++ GR L +E G +A+ ++G+V +YG+T +L + K+G DFFPL+V Y+E+ Y+ Sbjct: 8 DFLGRELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYS 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+L+RE R +E L R+IDR +RPLF K ++N+ Q++ VM D ++SP + Sbjct: 68 VGKIPGGFLKREGRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPEIT 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 S++ AS AL +S +PF+GPV V I+G+ V NP D+ D L L V+GT +AVLMV Sbjct: 128 SILGASLALGISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISDLSLTVAGTSEAVLMV 187 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E AN++SE++++DAI+ H K +I+ ++ K E I S+ +E Sbjct: 188 EAGANEVSEEIMIDAIMGAHEHIKEIIKFQEEIIKEVGVEKADITYYRTSEEIKEKIYEE 247 Query: 249 -KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 K+ R + I EK R +++++K +++ + E+ N+ + +F + ++VR ++ Sbjct: 248 AKKGFREAYDIHEKQAREDRVEEVKAEILDKYLEEYPD-NKLDFEEIFAKLLKEIVRGMI 306 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ +R DGR + +R I+ +VG ++R HGS LF RG TQ + + TLG DEQ +D + Sbjct: 307 TNEGIRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQIIDGIG 366 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 ++ HYNF + GE M P RREIGHG LA RA+ PV+P FPYT+R+VS Sbjct: 367 EETSKKYIHHYNFPAYSVGETGPMRGPGRREIGHGALAERALLPVIPDQKDFPYTIRVVS 426 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ S+GS+S A+VCGS+L+LMDAGVPI PVAGIAMGL+K+ + +LSDI G ED G Sbjct: 427 EVLASNGSTSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIKEENKVSVLSDIQGVEDFYG 486 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT GITA+QMD+KI GI + I+ AL +AK+GR HIL +M + ++ R + Sbjct: 487 DMDFKVAGTSEGITAIQMDIKIKGIDKAILTEALARAKKGRFHILGKMEEAITAPREDVS 546 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 ++ P++ M I D+I++VIG GGK+I I+++TG K++I DDG +++ L + + A Sbjct: 547 KYAPKIMTMKIAEDKIKDVIGPGGKMINKIIDETGVKIDILDDGQTFVSAVDLDDAKKAV 606 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 ++I IT E Y G+V +VMDFGAFV G ++GLVHIS+++ ERV K +DV+ G Sbjct: 607 QIIEDITREVEEGDTYVGKVARVMDFGAFVEIPGGKEGLVHISKIAHERVNKVTDVLNVG 666 Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690 D V VK+++ D +G+I LS K + Sbjct: 667 DEVNVKVIEIDKQGRINLSRKAL 689 >gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 696 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 304/689 (44%), Positives = 434/689 (62%), Gaps = 6/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT+ ++ + LETG A+Q+ GAV+ G V+LATV K+GQDFFPLT Y Sbjct: 3 HTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYT 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y E Q+ + V+ D + Sbjct: 63 EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S ++ AAS AL +S +PF GP+ GA++ ING+ +LNP E S LDL V+GT+ Sbjct: 123 SVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTKT 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 ++M+E EA +LS + +L A+ F + + AK K + + ++D +L Sbjct: 183 HIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-ELL 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300 ++ + L + P+K VR K+I ++ K +V +F ++ +I + +++ Sbjct: 242 AKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELEY 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++VR +L++ VR DGR + +R IS ++ L HGSS+F RG TQ++ VVTLGT D Sbjct: 302 EIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDN 361 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q ++L G + FM+HYNF + GEV R P RREIGHG LA RA+ VLP++ +FP Sbjct: 362 QRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFP 421 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479 Y +R+VSEI ES+GSSSMA+VC SLALM AGVPI VAGIAMGL D + +LSDI Sbjct: 422 YVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVAGIAMGLFSDSSGKYAVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +G EDH G MD K+AGT GITA QMD+K+ G+S +++ +QA+RGR HIL+ M K + Sbjct: 482 AGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKHI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S++ L PR+ + IP D+I +IG GGK +RGI E TGA++ I+DDG V I+ S+ Sbjct: 542 SKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGSN 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E A +M+ EV KIY+G+V ++ DFGAFV ++GL HIS++ +RV Sbjct: 602 QESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNS 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D+VKEGD + VK+L+ D GKI LS K Sbjct: 662 VKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690 >gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1056] Length = 733 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] Length = 696 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 295/697 (42%), Positives = 439/697 (62%), Gaps = 6/697 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E E AGR L +E G+I ++G + YG+T+++ +DG DFFPL+ Sbjct: 1 MFEHRIFETELAGRKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLS 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+++E+ Y+VGKIPGG+L+RE + +E +L SR+IDR IRPLF + ++N+ QV+ V+ Sbjct: 61 VDFEEKLYSVGKIPGGFLKREGKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 D + +P +V+M+ +S AL +S +PF GP + ++G++V+NP ++ + +L L VS Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVSTLHLVVS 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237 GT+DA++MVE A ++ +++VL+AI+F H E K ++ I ++ KE I + D Sbjct: 181 GTKDAIMMVEAGAEEIDDEIVLNAILFAHEEIKKIVAFIEEIVAAVGKEKCEIKLHLPD- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295 L ++ +E +R + EK R +++D + + + YF E + E G+I V Sbjct: 240 EDLRSKVDAFAREKMRAAVKTVEKMERTEKMDAVSAETLEYFEKELEEFEEVAGDIEEVL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 DI VR++++D+ VR D R + +R I + GL+ RTHGS++F RG TQ + V TLG Sbjct: 300 HDIIKDEVRSLIVDENVRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLG 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 D Q +D L +M HYNF + GE P RREIGHG LA RA+ PV+P Sbjct: 360 ALGDGQKLDGLDEEDNKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALVPVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPY +R+VSE+ S+GS+S A+VC S+L+L+DAGVPI VAGIAMGL+K D + Sbjct: 420 QDDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAV 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++ AL+QAK GR+HIL EM Sbjct: 480 LSDIQGMEDHLGDMDFKVAGTEHGVTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 KV++E + +L + P++ M I PD+IR+VIG GGK+I I+++TG K++I+ G V + Sbjct: 540 KKVITEPKPELSPYAPKIVKMQINPDKIRDVIGPGGKMINKIIDETGIKIDIEQTGEVFV 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 I A MI I E KIYKG V ++ FGAF+ + GL+HISQ+S + Sbjct: 600 VGVEQEMINKAISMIEDIVAEAEPGKIYKGTVTRIESFGAFIEILPGKQGLLHISQISNK 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 RV K DV+ GD V V + + D++ +I LS+K + + Sbjct: 660 RVEKVEDVLSIGDVVDVLVTEIDNKDRINLSIKAIKK 696 >gi|15900497|ref|NP_345101.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae TIGR4] gi|81532195|sp|Q97S28|PNP_STRPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|14972063|gb|AAK74741.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae TIGR4] Length = 737 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] Length = 733 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 290/692 (41%), Positives = 444/692 (64%), Gaps = 5/692 (0%) Query: 1 MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + V E ++AGRPLK+ETG+IA+ ++GA YG+TVV V +DG DFFPL Sbjct: 1 MFENYKVFETDFAGRPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+++E+ YAVGKIPG +L+RE RP++ IL SR+IDR IRPLF K +N+ V+ VM Sbjct: 61 SVDFEEKLYAVGKIPGSFLKREGRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D + SP + +MV SAAL +S +P++GP+ G V Y++G+YV+NP ++ + S + + V Sbjct: 121 VDPDCSPEIAAMVGTSAALSISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQMAVTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237 + T + M+E AN++S++V+ + I+ GH + +IE I + K S + Sbjct: 181 ASTDKLIAMIEAGANEVSDEVMYNGIMAGHEANQKIIEFIKGMQAEIGKAKFEYPSNEPD 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 ++ + + ED++++ +K VR +++ + +K+ +F + E +I Sbjct: 241 PEMLAAVMEFATEDVKLALDTDDKTVRDERLKPIYEKVHEHFDPIYPEC-EAKIDECMYK 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q VVR +LD++ R+DGR + +R ++A+VGLL R HGS +F RG TQ I TLG Sbjct: 300 TQKNVVRRWLLDEQKRVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPV 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D+Q +D + G + +M YNF + GE P RREIGHG LA RA+ PV+P Sbjct: 360 SDQQLLDGIDGEEFKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVIPPVE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY R+VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ GL+ +G+ ++ + Sbjct: 420 EFPYAYRLVSEVVSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGERWMTMV 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ AL++ + R +IL+E + Sbjct: 480 DIQGLEDFFGDMDFKVAGTHEGITAIQMDLKIDGLTPEIVKEALEKTHKARDYILDEIIL 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R +L ++ P++ + IP D+IR VIG GGKVI+ I + KV++++DG+V I+ Sbjct: 540 KCIPAPRAELSKYAPKMLSITIPVDKIREVIGSGGKVIQKICAECDVKVDVEEDGSVFIS 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + + A ++++I + PEV IYKG+V ++MDFGAFV ++GLVHIS+L +R Sbjct: 600 GTDIDNCNRALTIVKTIVEDPEVGAIYKGRVTRLMDFGAFVEIAPGKEGLVHISRLDVKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +DVV D V VK+L+ DD+G++ LS + Sbjct: 660 TEKVTDVVNVDDEVLVKVLEIDDKGRLNLSRR 691 >gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis A/HAR-13] gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis B/Jali20/OT] gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis A/HAR-13] gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 695 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 309/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GA+L ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR+IDRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P + G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|111657667|ref|ZP_01408397.1| hypothetical protein SpneT_02001144 [Streptococcus pneumoniae TIGR4] Length = 775 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 744 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 318/710 (44%), Positives = 446/710 (62%), Gaps = 26/710 (3%) Query: 1 MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 M D V + GR + ETGRIA+Q+ G+ +A G+ VL+TV Y KDG DFFPL Sbjct: 13 MLDPKEVSVNLPDGRVITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE-KDG-DFFPL 70 Query: 60 TVNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118 TV Y+E++YA G++PGGY +RE RP++ EIL +R+IDR IRP+F + + E QVI+ V+ Sbjct: 71 TVEYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVL 130 Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177 D + +P V+ + AAS ++ LS LPFE V +V ++GQ ++ P D+ LDL Sbjct: 131 SSDKKFAPDVLGVSAASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLV 190 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-- 235 V+GT+D+V MVE A ++SED ++ AI+ GH K + +A +L CAK + + K Sbjct: 191 VAGTEDSVCMVEGGAYEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFV 250 Query: 236 --DFSKL--------EEEMSQMIKEDLRVSCFIPEKYVRC-KQIDDLKKKMVSYFSSEHS 284 + KL +E+++ + ++ + F P C + ++D + + + Sbjct: 251 GEEHDKLVATVKDVVWDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQN 310 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + + +F D++ +R ++L++ VR+DGR + VR I ++G+L R HGS++F RG Sbjct: 311 AQLAADAKGIFSDLERTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRG 370 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ +V+ TLGT+ DEQ +SL G +M+HYNF P + GE ++G SRREIGHG L Sbjct: 371 ETQGLVICTLGTKADEQRFESLQGEGAKSYMLHYNFPPFSVGECKKLGL-SRREIGHGHL 429 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A R++ VLP FPYT+R+VSEI ES+GSSSMA+VCG L+LMDAGVPI PVAGIAM Sbjct: 430 AERSLAAVLPLPEDFPYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAM 489 Query: 465 GL------VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 GL VK+G ILSDI+G EDHLG MDFKV GT GITA QMD+KI GI+ +M Sbjct: 490 GLISEKGSVKEGGKIKILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMR 549 Query: 519 MALQQAKRGRLHILNEMSKV-LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL+QA++GR+HIL M+++ L R + E P + M IP +IR+VIG GG VI+G+ Sbjct: 550 EALEQARQGRIHILGRMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGM 609 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 QTG +NIDD+G + IA+ + E R MI +T PE + YKG+V + FGAFV Sbjct: 610 QAQTGCTINIDDNGNIDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFV 669 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 RDGLVHIS+L+ RV K DVV GD V V L D +GK+KLSM Sbjct: 670 EILPGRDGLVHISELADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719 >gi|331266884|ref|YP_004326514.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis Uo5] gi|326683556|emb|CBZ01174.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis Uo5] Length = 737 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 438/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ + SL +L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+++ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITEAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLARESATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G+I SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|148988952|ref|ZP_01820352.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP6-BS73] gi|147925449|gb|EDK76526.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP6-BS73] Length = 775 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 6276s] Length = 695 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR++DRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P V G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|225854123|ref|YP_002735635.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae JJA] gi|254782740|sp|C1CCW4|PNP_STRZJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225723734|gb|ACO19587.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae JJA] Length = 737 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDLEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 6276] Length = 695 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR++DRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P V G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLTSPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|148998264|ref|ZP_01825733.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP11-BS70] gi|147755907|gb|EDK62951.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae SP11-BS70] Length = 775 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + GR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK678] gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1] gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK408] gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1058] Length = 733 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 284/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ + Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQAEIIAVY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + K+R DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++I+++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDINEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|183603864|ref|ZP_02722383.2| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae MLV-016] gi|307067208|ref|YP_003876174.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200] gi|183577765|gb|EDT98293.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae MLV-016] gi|306408745|gb|ADM84172.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200] Length = 737 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + GR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|307706124|ref|ZP_07642943.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK321] gi|307618524|gb|EFN97672.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK321] Length = 737 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIISAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 701 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 298/693 (43%), Positives = 443/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++ ED++++AI+ E K ++E I ++ K K + ++ K + EE+ Sbjct: 187 MIEAGAKEVPEDIMIEAILIAQEEIKKIVEFIEEIVKEVGKPKM-----EYQKRVVPEEI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKVERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ D+ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 NLEKEIVRKMIADEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD D FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G++ I+ AL QAK RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis D/UW-3/CX] gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/9768] gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/11222] gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/11074] gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/9301] gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis D-EC] gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis D-LC] Length = 695 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR++DRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P V G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|309799898|ref|ZP_07694103.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis SK1302] gi|308116488|gb|EFO53959.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis SK1302] Length = 740 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ ++TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS A I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQAAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK+L D++G++ SMK + KP Sbjct: 669 VQIGDFVDVKVLKIDEKGRVDASMKALLPRPPKP 702 >gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 693 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 298/686 (43%), Positives = 436/686 (63%), Gaps = 9/686 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E AGRP ++E G +AR + A + YG+T +L V + ++G DFFPL+V+Y+E+ Sbjct: 5 ETEIAGRPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDYEEKQ 64 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+L+RE RP+ IL SR+IDR IRPLF K ++N+ V+ VM + +++P Sbjct: 65 YAVGKIPGGFLKREGRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHDNAPE 124 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V M+ +S L +S LPF+GP QV I+G++VLNP + ++ + L V+GT++AV+ Sbjct: 125 LVGMLGSSIVLSISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSEMHLTVAGTREAVM 184 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEE--- 242 MVE A+++ E +LDAI++ H E K +I I ++ A++ A + D K + EE Sbjct: 185 MVEAGADEIPEATMLDAILYAHKEIKKIISFIDQIVAEVGAPKA---DYKLYLPTEEMVT 241 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 E++ I + + + R + +D L +++ +F+ + N +I V +++ K Sbjct: 242 EITGYIGTRMHDAVRTEDAKERIESMDTLIEEVSEHFAEIYPD-NAADIDMVINNLKKKE 300 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+++LD +R D R VR ++ +V + R HGS+LF RG+TQ V TLG ++ Q Sbjct: 301 VRSLILDDGIRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQT 360 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + +M +YNF + GE P RREIGHG LA RA+ PVLP FPY Sbjct: 361 LDGLELESKKRYMHNYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEEDFPYA 420 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ S+GS+S A+VCGSS+ALM AGVPI K VAG AMGL+K+ + IL+DI G Sbjct: 421 IRVVSEVMSSNGSTSQASVCGSSMALMAAGVPIKKQVAGCAMGLIKEDEKLAILTDIQGM 480 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKVAGT+ GITA+QMD+KI GI I+ AL QA+ GRL IL M+ +++ Sbjct: 481 EDFLGDMDFKVAGTEDGITAIQMDIKIHGIDREILTKALNQAREGRLFILGVMNDAIAQP 540 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P + M I P++IR+VIG GG+ I GI + T K+ I++DGT+ IA++ A Sbjct: 541 REELSPYAPHITTMTIDPEKIRDVIGKGGETIIGIQDATDTKIEIEEDGTIYIAATDGAS 600 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +MI I EV + G+VVK+M FGAFV G++DGL+HIS+L+ RV D Sbjct: 601 SKKAHDMIFDIVREVEVGDVVTGKVVKIMKFGAFVDIPGSKDGLIHISKLANHRVENVED 660 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688 VV GD V VK+ + D +G+I LS K Sbjct: 661 VVSVGDMVTVKVTEIDAQGRINLSRK 686 >gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 696 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 303/689 (43%), Positives = 434/689 (62%), Gaps = 6/689 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT+ ++ + LETG A+Q+ GAV+ G V+LATV K+GQDFFPLT Y Sbjct: 3 HTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYT 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y E Q+ + V+ D + Sbjct: 63 EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S ++ AAS AL +S +PF GP+ GA++ ING+ +LNP E S LDL V+GT+ Sbjct: 123 SVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTKT 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 ++M+E EA +LS + +L A+ F + + AK K + + ++D +L Sbjct: 183 HIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-ELL 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300 ++ + L + P+K VR K+I ++ K +V +F ++ +I + +++ Sbjct: 242 AKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELEY 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++VR +L++ VR DGR + +R IS ++ L HGSS+F RG TQ++ VVTLGT D Sbjct: 302 EIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDN 361 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q ++L G + FM+HYNF + GEV R P RREIGHG LA RA+ VLP++ +FP Sbjct: 362 QRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFP 421 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479 Y +R+VSEI ES+GSSSMA+VC SLALM AGVPI V+GIAMGL D + +LSDI Sbjct: 422 YVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSDSSGKYAVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +G EDH G MD K+AGT GITA QMD+K+ G+S +++ +QA+RGR HIL+ M K + Sbjct: 482 AGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKHI 541 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S++ L PR+ + IP D+I +IG GGK +RGI E TGA++ I+DDG V I+ S+ Sbjct: 542 SKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGSN 601 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E A +M+ EV KIY+G+V ++ DFGAFV ++GL HIS++ +RV Sbjct: 602 QESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNS 661 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D+VKEGD + VK+L+ D GKI LS K Sbjct: 662 VKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690 >gi|322517679|ref|ZP_08070542.1| polyribonucleotide nucleotidyltransferase [Streptococcus vestibularis ATCC 49124] gi|322123667|gb|EFX95259.1| polyribonucleotide nucleotidyltransferase [Streptococcus vestibularis ATCC 49124] Length = 745 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 288/693 (41%), Positives = 433/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ +AGRPL +E G +A+Q++GAV+ YG+T VL+ V + + DFFPL VNY+ Sbjct: 4 QTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D+D LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ ++L+ Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELKV 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + L + + EK R +K+++++ + + + E +V + E Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLTSYQERFAEDEDKETILRDVVEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSIE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V++E R +L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 VIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ ER Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWERT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + DVVK GD V VK++ D++G+I S+K + Sbjct: 663 ERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTL 695 >gi|306825739|ref|ZP_07459078.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432100|gb|EFM35077.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 754 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 27 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 86 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 205 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 265 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E E + + E ++ V Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFERIMRDVAEILEQMEHAEV 325 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ V+TL + Q + Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 685 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 686 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 719 >gi|169833588|ref|YP_001694072.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pneumoniae Hungary19A-6] gi|226703873|sp|B1IAA9|PNP_STRPI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168996090|gb|ACA36702.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae Hungary19A-6] Length = 737 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++++ + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQTVKDQVIAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|319939878|ref|ZP_08014233.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810889|gb|EFW07208.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus 1_2_62CV] Length = 726 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/690 (41%), Positives = 438/690 (63%), Gaps = 14/690 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+ L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGKDLVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F+ ++NE QVI V+ +D ++S + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFADGFRNEVQVINTVLSYDADASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y+NG+ V+NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI- 248 A +LSE+++L+A++ GH K +I ++ KE ++ +++EE+ I Sbjct: 189 SGAKELSEELMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVE---LLRVDEELQTEIV 245 Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 DL+ + + EK R +K ++++ + +++ E ++ + E ++ Sbjct: 246 AGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYAEHEEFDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + A++ L R HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FP Sbjct: 366 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ IL+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + + Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIERTIP 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 APRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I A+E+I ++ +V+++Y +VV++ FGAFV+ D LVHIS+++ R K Sbjct: 606 DAINRAKEIIAALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNKV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+V+ GD V VK++ D++G++ SMK + Sbjct: 666 EDLVQLGDEVDVKIIKIDEKGRVDASMKAL 695 >gi|315612684|ref|ZP_07887596.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis ATCC 49296] gi|315315271|gb|EFU63311.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis ATCC 49296] Length = 754 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 27 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 86 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 205 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 265 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAGILEQMEHAEV 325 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAVVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 506 DHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G+I SMKV+ KP Sbjct: 686 VAIGDEVDVKVIKIDEKGRIDASMKVLLPRPPKP 719 >gi|167765957|ref|ZP_02438010.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1] gi|317498464|ref|ZP_07956758.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|167712360|gb|EDS22939.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1] gi|291558981|emb|CBL37781.1| polyribonucleotide nucleotidyltransferase [butyrate-producing bacterium SSC/2] gi|316894157|gb|EFV16345.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 696 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 302/692 (43%), Positives = 438/692 (63%), Gaps = 19/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +E GR+A Q++GA YG+TVVL+T +DG DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLMVEVGRVAAQANGAAFMHYGDTVVLSTATASEKPRDGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGGYL+RE +P+EN IL R+IDR +RPLF K Y+N+ + VM D + SP + Sbjct: 67 AVGKIPGGYLKREGKPSENAILTDRVIDRPMRPLFPKDYRNDVALNNLVMSVDPDCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP V I+G++V+NP + + S L L V+ T++ V+M Sbjct: 127 TAMLGSAIATAISDIPFDGPTASTMVGLIDGEFVINPTSAQKEVSDLALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEE 242 +E AN++ EDV+L+AI H + +I+ I + C KE ++D + + + Sbjct: 187 IEAGANEVPEDVMLEAIFKAHEVNQEIIKFIDTIVAECGKEKHDYEHHIVDPEMYDDM-- 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQA 300 ++ + E + + F +K R I +++K+ + +E+ W GE V F Q Sbjct: 245 -VAFITPEAMEEAVFTDDKQTREANIRAIEEKLEERY-AENEEWLAQIGEAVYAF---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGRD + +R + A+V L R HGS+LF RG TQ + V TLG+ + Sbjct: 300 KTVRKMILKDHKRPDGRDIKQIRPLHAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + T+ +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QRLDGIDVTETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSEI ES+GS+S ++C SSL+LM AGVP+ PVAGI++GLV + DD+IIL+ Sbjct: 420 PYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGEGDDDYIILT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGTD GITA+QMD+KI G++E I+ A+ + K R HIL++ M+ Sbjct: 480 DIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTEQIIREAIARTKEARTHILHDVMN 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+ +R +GEF P++ I P++I VIG GK I GI+++TG K++ID+ G + I Sbjct: 540 PVIPAARDHVGEFAPKISQYTIDPEKISEVIGKQGKTINGIIDETGVKIDIDESGRIDIL 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A I+ A +I+SI + V IY+G+VV++M+FGAFV +DG++HIS+LS ER Sbjct: 600 SEDQAMIDKAISIIKSIVEPLNVGDIYEGEVVRIMNFGAFVQLSPNKDGMIHISKLSNER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K DVV GD V VK+L+ D G+I L ++ Sbjct: 660 VEKVEDVVNIGDKVAVKVLEIDKMGRINLKLE 691 >gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK49] Length = 733 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/687 (41%), Positives = 431/687 (62%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSEDV+L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIVAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + ++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 579 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 290/581 (49%), Positives = 398/581 (68%), Gaps = 8/581 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD H ++ + LETG IARQ+ AV + G+TVVL V ++ +K+GQDFFPLT Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++ V+ Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E + +M+ ASAAL+LSG+PF GP+ A+V Y+NG YVLNP E + LDL V+ Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT AVLMVE EA L EDV+L A+++GH++ + I AI++ A P V D K Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238 Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295 EE ++ ++ E ++ + I +K R ++D+ + + + E + EI +F Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T DEQ +D+LSG + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+ VLP+ Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 F YT+R+VSEITES+GSSSMA+VCG L+L+ AGVP+ VAGIAMGL+ +G+ F + Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI++ IM +AL QAK RLHIL++M Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 ++ + +L PR+ M I D+IR VIG GG+ IR Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRA 578 >gi|307710641|ref|ZP_07647074.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK564] gi|307618584|gb|EFN97727.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK564] Length = 737 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++GAV+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYCAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 434/Bu] gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis L2tet1] gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis 434/Bu] gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 695 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + F P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVGFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR+IDRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P + G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + LL RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|293364915|ref|ZP_06611632.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis ATCC 35037] gi|291316365|gb|EFE56801.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis ATCC 35037] Length = 754 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 27 FAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 86 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPMAA 145 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 205 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 265 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 325 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ V+TL + Q + Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G+I SMK + KP Sbjct: 686 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719 >gi|183603099|ref|ZP_02710211.2| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC1087-00] gi|183571256|gb|EDT91784.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Streptococcus pneumoniae CDC1087-00] Length = 737 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + ++ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVENL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|307704339|ref|ZP_07641256.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK597] gi|307622099|gb|EFO01119.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis SK597] Length = 737 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|332076425|gb|EGI86888.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae GA41301] Length = 737 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFIHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G+I SMK + KP Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|312867935|ref|ZP_07728139.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis F0405] gi|311096339|gb|EFQ54579.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis F0405] Length = 740 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++GAV+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++G+ V+NP ++ + SL +L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIVINPTQEQAEHSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ ++TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702 >gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] Length = 721 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 305/693 (44%), Positives = 443/693 (63%), Gaps = 18/693 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H GR L +ETG+ ARQ+ G+V YGET+V+AT + D F PLTV ++ Sbjct: 12 HRFSAVLGGRELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPID-MPFLPLTVEFE 70 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA+GKIPG ++RRE RP E IL +RM DR IRPLF K +++E QVI+ V+ D ++ Sbjct: 71 ERHYAIGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILTVLAADQQN 130 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+ +AASAALMLS +P++GP+ +V +NG+ VLNP L + D+ LDL V+G++D Sbjct: 131 PPDVLGPLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDLDLIVAGSKD 190 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI-------EAISKLAKMCAKEPIVIDSKD 236 A++MVE A ++SED++++A+ F H E +P+I E + K + P + D + Sbjct: 191 AIIMVEAGAKEVSEDLLVEALDFAHREMQPLIALQEEMREKLGKPKFAWSPPPTLTDEE- 249 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVS 293 LE I+ L+ K+ R + +D + +V+ E E Sbjct: 250 ---LEAFYRLAIERGLKDVLLTASKHERAEALDAFRDALVAEIVPEEDEDAEVRRALYKQ 306 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F D+ + +R +++++K R DGR +R I +V +L R+HGS++F RG+TQ + VT Sbjct: 307 AFGDVTKRELRRMIVEEKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVT 366 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT DEQ +D L + DF++HYNF P +TGEV R+ SRRE+GHG LA+RA+ P+L Sbjct: 367 LGTGRDEQIIDDLGLDESEDFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALKPML 426 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472 P+ FPYT+R+V ++ ES+GSSSMATVC LALMDAGVPI KPVAGIAMGLVK + + Sbjct: 427 PEKDAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAMGLVKPEEGE 486 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 ++L+DI G ED LG MDFKV GT G+TA+QMD+K+ G+ +M AL+QA+ RL IL Sbjct: 487 PVVLTDILGMEDALGDMDFKVTGTRDGVTALQMDIKVQGLDAAVMRRALEQARAARLAIL 546 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M +VL E R +L F PR+ + IP D+I VIG GGK IR + E+ G ++I++DGT Sbjct: 547 DQMEQVLPEPRRELKPFAPRILALKIPVDKIGAVIGPGGKNIRAL-EELGVSIDIEEDGT 605 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V+I S+ E A+ I ++T +V ++Y+G VV+ +FGAF+ +GL+HISQ+ Sbjct: 606 VRIYSAEGGAAEEAKARIENLTREAKVGEVYEGVVVRTTNFGAFIQLFPGTEGLLHISQI 665 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + ERV K D +K GD + VK+ D++G++ L Sbjct: 666 AEERVDKVEDHLKVGDKITVKVNRIDEKGRVDL 698 >gi|322390877|ref|ZP_08064385.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis ATCC 903] gi|321142390|gb|EFX37860.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis ATCC 903] Length = 740 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 283/694 (40%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++G+ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDTDLQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ ++TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAQVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SM+ + KP Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMRALLPRPPKP 702 >gi|322377809|ref|ZP_08052298.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334] gi|321281232|gb|EFX58243.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334] Length = 737 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLRVDADLQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] Length = 733 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ +L + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F + ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQAEIVAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|296877279|ref|ZP_06901319.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431799|gb|EFH17606.1| polyribonucleotide nucleotidyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 785 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++GAV+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 55 FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 113 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 114 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 173 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++G+ ++NP ++ + SL +L V+GT+ A+ MVE Sbjct: 174 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAERSLLELTVAGTKHAINMVE 233 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 234 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDADLQAEIIAAY 293 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 294 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 353 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ V+TL + Q + Sbjct: 354 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 413 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 414 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 473 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 474 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 533 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 534 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 593 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 594 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 653 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 654 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 713 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 714 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 747 >gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] Length = 722 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 292/693 (42%), Positives = 447/693 (64%), Gaps = 16/693 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T + +AGR L +ETG+ + ++G+ YGETVV+A V ++G DFFPL+V+Y+ Sbjct: 25 RTFQTMFAGRELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYE 84 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YAVGKIPG +L+RESRP+E IL SR+IDR IRPLF K +N+ V+ V+ D+++ Sbjct: 85 EKLYAVGKIPGSFLKRESRPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDN 144 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 SP VV+M A + A+ +S +P+ GPV V ++G++VLNP ++E S LDL V+ + + Sbjct: 145 SPEVVAMTAVAIAISISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSDLDLTVASSGE 204 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 ++M+E AN++ + +LDAI+ GH E K +I+ I+++ K I +S + ++L + Sbjct: 205 KIVMIEAGANEVDDKTMLDAIMTGHEELKHIIDFINEIKAEVGKPKIEFESMEVPTELFD 264 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFED--- 297 + +M + ++ + +K VR ++++ H+ ++E E + V ++ Sbjct: 265 AIKEMAIDRVKEALDTDDKTVR-------DERLLPIIGDIHAKFDELYPEQIPVIDECIY 317 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +Q VVR +LD++ R+DGR + +R ++A+VGLL R HGS LF RG TQ + + TLG Sbjct: 318 KLQKYVVRRWLLDEQKRVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGP 377 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DEQ +D + +M +YNF + GE P RREIGHG LA RA+ PVLP Sbjct: 378 VSDEQRLDGIDENTFKRYMHNYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 437 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VSE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL+ +GD F+ + Sbjct: 438 EEFPYAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRFMTM 497 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 DI G ED G MDFKV GT GITA+Q+D+KI G++ I+ A ++ ++ RL+IL+E M Sbjct: 498 VDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKIDGLTPEIIAEAFEKTRKARLYILDEIM 557 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 K L + R ++ ++ P++ IP D+IR+VIG GGKVI+ I + K++I++DG V I Sbjct: 558 LKALHKPREEVSKYAPKMLQTVIPIDKIRDVIGTGGKVIQKICAEYDVKIDINEDGHVFI 617 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +A ++A ++ +I PE+ IYKG+V ++++FGAFV ++GLVHIS+L Sbjct: 618 LGVEMANAKSALAVVETIAKDPEIGAIYKGKVTRILNFGAFVEIAPGKEGLVHISKLDFH 677 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV EGD V VK+++ DD+G+I LS K Sbjct: 678 RVEKVQDVVNEGDEVVVKVVEIDDQGRINLSRK 710 >gi|307708303|ref|ZP_07644770.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC 12261] gi|307615749|gb|EFN94955.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC 12261] Length = 737 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTVVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y+ +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702 >gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 7424] gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424] Length = 718 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 303/695 (43%), Positives = 447/695 (64%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T S ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKAAS-REGVDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF +++ QVI + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASLAVILAEIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I A + K+ +P ++ ++ Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIAAQQDVMETLGVKLATLDPPPVNESVLEFIKT 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH----SSWNEGEIV-S 293 + + IK+ L S + +K R +D++K +++++ E ++ E ++V + Sbjct: 247 QTADEIKKVL--SQYDLDKNGRDTALDEIKAAKVEEVIASLPEEDPIKVATTEEAKLVDT 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352 +F+D+ K++R+ ++++ VR+DGR + VR IS +VGLL R HGS LF RG TQ + + Sbjct: 305 LFKDVTKKLMRSQIINEGVRVDGRQLDQVRPISCRVGLLPPRVHGSGLFCRGLTQVLSIA 364 Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q D L ++ HYNF P + GE M +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAILP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+KDGD Sbjct: 425 VLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIKDGD 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+ A++QA+ RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M V+ R +L + PR+ M I PD I VIG GGK ++ I EQT K++IDDDG Sbjct: 545 LDKMLSVIDSPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKIDIDDDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV I++S + E A+++I ++T ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K D + GD V VK+ + D++G++ L+ Sbjct: 665 LAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLT 699 >gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis D(s)2923] gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis Sweden2] gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis E/150] gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis E/11023] Length = 695 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 308/701 (43%), Positives = 443/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR++DRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P V G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI+FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V S VKEGD + VKLL +++G++KLS + Sbjct: 650 HISELSKQKVDNISGFVKEGDKLAVKLLSINEKGQLKLSHR 690 >gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 749 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 300/700 (42%), Positives = 446/700 (63%), Gaps = 8/700 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M D++ V I L ETG++A+Q++G+V A G+TV+L T ++G DFFPL Sbjct: 1 MQDIYRVRI--GEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLL 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+++ER Y+ GKIPGG+++RE RP++ IL +R+IDRSIR LF +++ V+ V+ Sbjct: 59 VDFEERFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D + P+++++ AASAAL +S +P+ GPV ++ YI+G V+NP + + SL+L VS Sbjct: 119 DQHNPPNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVS 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238 G D + MVE A ++ ED+++DA+ E K +++ ++ + K+ IVID Sbjct: 179 GHSDGITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVP 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++ + +K D+ + I +K R I L+ + +F+ E G I E Sbjct: 239 EIDCWVETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPD-KGGYISGAVEHW 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR- 357 ++R + + +K R DGR ++ +R +S +V +L + HGS++F RG+TQ++ TLG Sbjct: 298 VKAMMRKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLG 357 Query: 358 EDEQYVDSLSGTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 ED+Q +D L + N F++HYNF P + GEV M P RREIGHG LA RA+ P++P Sbjct: 358 EDDQLIDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDD 417 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VS+I ES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+GDD ++L Sbjct: 418 TEFPYVVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVL 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT G+TA+QMD K GGI+ I+ AL QAK R+ IL+ M Sbjct: 478 TDIQGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVME 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + +S L PR+ M I D+IR+VIG GGKVIRGI ++TGAKVNIDDDG + IA Sbjct: 538 QAISNPG-DLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIA 596 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +S E+ AA +MI I + ++++G+V ++M FGAFV ++GL+H+S++ST R Sbjct: 597 GASQEEVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHR 656 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V K DV K GD V V + + DD G+I L+ K + + K Sbjct: 657 VGKVEDVFKPGDPVLVMVREIDDMGRINLTRKKILADEAK 696 >gi|312862624|ref|ZP_07722865.1| polyribonucleotide nucleotidyltransferase [Streptococcus vestibularis F0396] gi|311101884|gb|EFQ60086.1| polyribonucleotide nucleotidyltransferase [Streptococcus vestibularis F0396] Length = 745 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 433/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ +AGRPL +E G +A+Q++GAV+ YG+T VL+ V + + DFFPL VNY+ Sbjct: 4 QTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D+D LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ ++L+ Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELKV 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + L + + EK R +K+++++ + + + E +V + E Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQTVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + F+ HYNF + G+ R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLIDGLDPEYKKRFLHHYNFPQYSVGDTGRYGAPGRREIGHGALGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 V++E R +L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 VIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ ER Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWERT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + DVVK GD V VK++ D++G+I S+K + Sbjct: 663 ERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTL 695 >gi|270293225|ref|ZP_06199436.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143] gi|270279204|gb|EFA25050.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143] Length = 775 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 48 FAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 226 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQAKVV 303 +L+ + + EK R +K ++ + + +++ E + + + E ++ V Sbjct: 287 NSELQKAVQVEEKLAREAATQAVKDQVTAVYQEKYADHEECDRIMRDVAEILEQMEHAEV 346 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ V+TL + Q + Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 647 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G+I SMK + KP Sbjct: 707 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740 >gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 638 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/638 (44%), Positives = 423/638 (66%), Gaps = 6/638 (0%) Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 +NY+E+ YA GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ Sbjct: 1 MNYEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSA 60 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+ Sbjct: 61 DPDCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVA 120 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDF 237 G +DAV MVE A++++E +L+AI FGH E + +++ ++ K+ + +D Sbjct: 121 GHKDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDE 180 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSV 294 + +E S ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ Sbjct: 181 ALVERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAI 240 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 ++ + VR ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TL Sbjct: 241 LNELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTL 300 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G D Q +D L + FM HYNF + GE + AP RREIGHG L RA+ ++P Sbjct: 301 GALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIP 360 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 TA FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + Sbjct: 361 DTADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYT 420 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N Sbjct: 421 ILTDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNH 480 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + + R +L + P+V M I PD+IR+VIG GGK I I+++TG K++I+ DGT+ Sbjct: 481 MLQTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF 540 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I + A I ARE+I IT EV + Y+ V ++ +GAFV +D L+HISQ+S Sbjct: 541 IGAVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISK 600 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 R+ K DV+K GDT+ VK+ + D +G++ S + +++ Sbjct: 601 NRIEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 638 >gi|307703168|ref|ZP_07640114.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis ATCC 35037] gi|307623243|gb|EFO02234.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis ATCC 35037] Length = 737 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKVVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + AQV L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G+I SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702 >gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B1 str. Okra] gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1 str. Okra] Length = 702 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 287/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V+Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + AIIFG ECK ++ EA++K K EP++ + + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIIFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADIAEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P + Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|289168431|ref|YP_003446700.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6] gi|288907998|emb|CBJ22838.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6] Length = 737 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQSEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris str. Hildenborough] gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris DP4] gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris DP4] gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris RCH1] Length = 760 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 312/705 (44%), Positives = 452/705 (64%), Gaps = 26/705 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +F+ V G+ + ETGR+A Q+DGAV G TVVL T + +D FFPLT Sbjct: 4 IFNAMRVTATVGGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRD-LGFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V Y E+ YA G+IPG + RRE RP+E E L+SR+IDR IRPLF K K+E QV+ NV+ Sbjct: 63 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVIS 122 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D + V+++ AS AL LS +PF+GPV GA++ I+GQ+V+NP + E ++ L++ + Sbjct: 123 SDQNNDSDVLAVTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++DAV+MVE EA+ + E V+++A+ +GH E +P+I+A KL +M K ++F+ Sbjct: 183 AASRDAVVMVEGEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKA-----KREFT 237 Query: 239 KLEEEMSQMIKE------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---- 288 E+ + DL V+ IPEK R +K+K++ ++ + + Sbjct: 238 APVEDADLAARVAALATADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPL 297 Query: 289 ---GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 G+I+S E ++VR ++ + R+DGRD+ TVR I + G+L R HGS+LF RG+ Sbjct: 298 RAVGDILSALEK---RIVRERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGE 354 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 T+++VV TLG+ DEQ +DSL+G FM+HYNF P GEV + SRREIGHG LA Sbjct: 355 TKSLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFAPYCVGEVKPVRV-SRREIGHGALA 413 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 +A+ P+LP FP+TLR+V+E ES+GSSSMA VCG L+LMDAGVPI+ PVAG+AMG Sbjct: 414 EKALRPILPLGEDFPFTLRVVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMG 473 Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 L+K+GD +++L+DI GDED LG MDFK+AGT GITA+QMD+K+ G+ ++M A+QQA+ Sbjct: 474 LIKEGDQYVVLTDILGDEDALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQAR 533 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 RLHIL EM KVL R +L + P+ + + PD IR +IG GGK I+ I TGA + Sbjct: 534 DARLHILGEMGKVLEAPRAELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASI 593 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 +I+D G V I + +L +E AREM++ ++ K Y G+V KV++ GA V + Sbjct: 594 DIEDSGRVSIFAPTLEAMEMAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEA 653 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 LVHISQL T RV + SDV + G+ + VK+++ + +I+ S K V Sbjct: 654 LVHISQLDTNRVEQASDVARLGEDMVVKVIEING-DRIRASRKAV 697 >gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 695 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 308/701 (43%), Positives = 442/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GA+L ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR+IDRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P + G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+ ++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPEISRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V SD VKEGD + VKLL +++G++KLS K Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690 >gi|306829036|ref|ZP_07462227.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC 6249] gi|304428841|gb|EFM31930.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC 6249] Length = 737 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGKVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ + SL +L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis ATCC 700641] gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis ATCC 700641] Length = 783 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/694 (40%), Positives = 437/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 55 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 113 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 114 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 173 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ +Q L+L V+GT+ A+ MVE Sbjct: 174 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 233 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ + L+ E+ Sbjct: 234 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 293 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 294 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 353 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ ++TL + Q + Sbjct: 354 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 413 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 414 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 473 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 474 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 533 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + E R Sbjct: 534 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEVTIPEVR 593 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 594 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 653 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R + D+ Sbjct: 654 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 713 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ GD V VK++ D++G++ SMK + KP Sbjct: 714 VEIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 747 >gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK115] gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK150] Length = 733 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 283/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP + + Sbjct: 69 GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ + Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIIAAVGKEKAEVELLHVDEELQAEIIAVY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + K+R DGR + +R + A+V L HGS LF RG TQA+ V+TL + Q V Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAPMGETQIV 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIAGITAEILTEALAQAKKARFEILDLIEATIPAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R DV Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V+ GD V VK++ D +G++ SMKV+ Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695 >gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 70] gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 70s] Length = 695 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 308/701 (43%), Positives = 442/701 (63%), Gaps = 27/701 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V ++ + L ETG+IARQ+ GAVL ET V ++ SL + DF P V Sbjct: 3 FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ + G+ GG+L+RE RP+E EIL+SR++DRS+RP F + QV+ V +D Sbjct: 61 DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 ++ P +++ ASAAL +S +P V G +V + G++V+NP DE S LDL ++G Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T AVLM+E + L+E+ VL+AI FG + +AI K K+ K+FS + Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287 + + ED++ VS FI EK+ + D L++ +++ E+S ++ Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + + F+ ++ +R ++ D +R+DGR + +R IS + L RTHGS LF RG+TQ Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ V TLG Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA + Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP+T++FPY +R+ S ITES+GSSSMA+VCG LALMDAGVPI PVAGIAMGL+ Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D IILSDISG EDHLG MDFKVAGT GITA QMD+KI GI+ IM AL QAK+G Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R HILN M++VL+ + + ++ PR+E M I +I VIG GGK IR I+E++GA+V+I Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG + IA+S+ I A+E+I +T EV K+Y G+V + FG FV ++GL Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 HIS+LS ++V S VKEGD + VKLL +++G++KLS + Sbjct: 650 HISELSKQKVDNISGFVKEGDKLAVKLLSINEKGQLKLSHR 690 >gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC 35896] Length = 726 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 301/694 (43%), Positives = 452/694 (65%), Gaps = 4/694 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ R LK+E G++A ++GA L + G+TVVL T ++G DFFPL+V+++ER Sbjct: 6 EMPLGNRQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFEERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE RP+E IL SR+IDR IRPLF K ++N+ QV+ V+ + + +P Sbjct: 66 YSVGKIPGGFIKREGRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPDVTPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PF GP V I+GQ +LNP +D+ S L L VSGT+DA++ Sbjct: 126 VLAMIGSSIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASDLHLTVSGTKDAIM 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245 MVE AN+++E +L+AI++ H E K ++ I + + KE + + K ++E + Sbjct: 186 MVEAGANEVTERTMLEAILYAHEEIKKIVSFIETIVEEVGKEKMEYVVFKADEQIESHVL 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + KE ++ + +K R + +D +++++ +F+ E N ++ I + +R Sbjct: 246 EYGKEKMKAAILTKDKTERMENMDKARQEIMEHFA-EIYPENIKDVEETIYKITKEGIRE 304 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L ++R D R + +R IS +VG L RTHGS++F RG TQ + V TLG + Q +D Sbjct: 305 LILVDRIRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQTLDG 364 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L +M HYNF + GE P RREIGHG LA RAI P+LP +F Y +R+ Sbjct: 365 LDENIEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERAILPMLPSKEEFAYAIRV 424 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSE+ S+GS+S A+VCGS+L+L+DAGVP+ + VAGIAMGL+K+ + ILSDI G ED Sbjct: 425 VSEVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAILSDIQGMEDF 484 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT+ GITA+QMD+KI GI E I+ AL+QA++GRL ILN+M +V+S R + Sbjct: 485 LGDMDFKVAGTEEGITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMREVISSPRPE 544 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + ++ P V M I P++IR VIG GGKVI I+++TGAK++I+ DG + I + + + Sbjct: 545 ISQYAPMVLQMKIDPEKIREVIGTGGKVINKIIDETGAKIDIEQDGNIFILAVERDKGKL 604 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A++MI I + PEV KIY+ +V ++MDFGAF F ++GL+HISQ +R S + Sbjct: 605 AKQMIEEIVEEPEVGKIYRAKVTRLMDFGAFAEFMPGKEGLIHISQADIQRTDDISSLWS 664 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ-NTGKPI 698 GD V V L++ DD+G++ LS + V Q + G+PI Sbjct: 665 VGDEVEVMLMEIDDQGRMNLSRRAVMQRDVGEPI 698 >gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] Length = 717 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 291/695 (41%), Positives = 447/695 (64%), Gaps = 11/695 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F ++ AGR LK++ G+I + S+ A +YG+TVVL ++G DFFPL+ Sbjct: 2 FFMSEIIQTTVAGRTLKVDYGKIGKLSNCAFFISYGDTVVLINANASDKPREGVDFFPLS 61 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 + Y+ER Y+VGKIPGG+++RE +P+E IL +R IDR +RPLF K Y+N+ QV+ V+ Sbjct: 62 IEYEERLYSVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSV 121 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +++P ++++ AS AL +S +PF PV V ++G++V+NP L+E + SL+L V Sbjct: 122 DQDNAPDILAINGASLALCMSSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSSLNLTVC 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSK 235 T + V+MVE +++ ED + DAI+FG ECK ++ E ++K K +EP + + Sbjct: 182 ATDERVMMVEAGGDEIPEDTMYDAIMFGFEECKKIVAFQKETMNKYGKQ-KEEPELYKVE 240 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + +EEE+ + + ++ + +I ++ R ++D+ K++ FS ++ N +I V Sbjct: 241 E--SIEEEVRKFAFQKIKDAMYIMDRDERNAALEDVDKELNEQFSEKYPD-NGPDIAEVV 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 I+ ++VR +ML++ R+DGR + +R IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 YKIKKEIVRNMMLNEHRRVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLG 357 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + D Q +D + + ++ HYNF +TGE + P RREIGHG LA +A+ P++P Sbjct: 358 SLGDVQILDGVGSEESKRYIHHYNFPSYSTGETRPLRGPGRREIGHGALAEKALEPLIPS 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DF 473 QFPYT+R+VSE+ S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGL+ D Sbjct: 418 EDQFPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKE 477 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 I++DI G ED G MDFKV GT+ GITA+Q D KI G+SEN + L +A+ RL IL+ Sbjct: 478 EIVTDIQGIEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSENCIRETLNRARTARLFILD 537 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 ++ K + E+R +L E+ P+ M+IPPD+IR+VIG GGKVI I+ +TG K++I +DG + Sbjct: 538 KIHKCIPEAREELSEYAPKTYTMSIPPDKIRDVIGAGGKVINKIIAETGVKIDIKEDGKI 597 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + S + + A ++I +T + +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 FVMSEDSSSAKKALKIIEDLTREVKAGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLD 657 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K D+V GD + VK+ D D++G+I LS K Sbjct: 658 FTRVNKVEDIVSVGDKILVKVTDIDNQGRINLSRK 692 >gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum NCTC 2916] gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A2 str. Kyoto] gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum NCTC 2916] gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 702 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 292/695 (42%), Positives = 446/695 (64%), Gaps = 16/695 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ ++ ++G DFFPL+V+Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKAPREGIDFFPLSVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVI--DSKD 236 + V+MVE ++ E+ + AI+FG ECK ++ EA++K K EPI+ D + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFQECKNIVAFQEEAVAKFGK-TKNEPILYKADEEV 240 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 +++E MIKE + +I +K R Q+D +K+K+ FS ++ + +I V Sbjct: 241 EKEVKEFAFDMIKEVM----YIMDKDERNAQLDKVKEKISEEFSEKYED-KKADIAEVIY 295 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 Q +VVR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 296 KTQKEVVRNMLLNENRRPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGA 355 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D ++ +M HYNF + GEV + P RREIGHG LA RA+ P++P Sbjct: 356 LGDVQILDGIAEEASKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSE 415 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFI 474 +FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ D Sbjct: 416 EEFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLEKEK 475 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +++DI G ED G MDFKVAGT+ GIT++Q D KI G+S+N + AL+ AK+ RLHIL + Sbjct: 476 VITDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGK 535 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 + + + E R +L ++ PR EI+ I P++IR+VIG GGK+I I+ T K+ I +DG + Sbjct: 536 IKECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKIINKIIADTNVKIEIKEDGKIF 595 Query: 595 IASSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 596 VTSNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLD 655 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 656 FARVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|147669503|ref|YP_001214321.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp. BAV1] gi|187610294|sp|A5FQT2|PNP_DEHSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146270451|gb|ABQ17443.1| Polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. BAV1] Length = 720 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 287/701 (40%), Positives = 453/701 (64%), Gaps = 6/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ E GR L +E+G++AR +D A+ Y +T +L T+ + ++G DF PLT Sbjct: 1 MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++Y+ER YA GKIPGG++RRE RP+E IL R+ DR +RPL K ++N+ Q+II V+ Sbjct: 61 IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D E+ + +V AS L +S +P+EGPV +++ YING++VLNP + + S LDL V Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 T+ AV+M+E + ++ ED++++AI F H + +I+ ++ KE + + + Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++ ++ +K + + +K R ++ L+ ++V+ S ++ EG+I++ ++ Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R+ +L+K +R++GR + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ + Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D LS FM+HYNF P +TGEV R G+P RREIGHG LA RA+ P+LP + Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPILPTPEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477 FPYT+R+V+++ S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+ + + ++ Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENGTYCTIT 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED+ G MDFKVAGT GITA+Q+DMK+ GIS +I+ A+ QAK R +IL+ M K Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L++ + +L + PR+ + I P +I +VIG GGK IR I+EQT V+I++DGTV I + Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 A + A ++I +T E IY G+V ++M FGAFV ++G+VHIS+L+ RV Sbjct: 598 IDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K D+VK GD + VK+++ D++G++ LS +V+ PI Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698 >gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A3 str. Loch Maree] gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 702 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + AI+FG ECK ++ EA++K K EP++ + + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P ++ Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 742 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/687 (41%), Positives = 435/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 21 FAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 80 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMAA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV YI+GQ+++NP + + SL +L V+G+++A+ MVE Sbjct: 140 MFGSSLALSISDIPFNGPIAGVQVGYIDGQFIINPDKAQMEASLLELTVAGSKEAINMVE 199 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH + +I ++ KE ++ + L+ E+ Sbjct: 200 SGAKELSEDIMLEALLKGHQAIQELITFQEEIVAAVGKEKTEVELLQVDTDLQAEIVTKY 259 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKK-----MVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 L+ + + EK R +++K+ M + E+ + ++V + E ++ V Sbjct: 260 NAQLQTAVQVEEKKAREAATEEVKETVKAEYMERFAEDENLATIMRDVVEILEQMEHAEV 319 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + K+R DGR + +R + AQ+ L + HGS LF RG TQA+ V+TL + Q + Sbjct: 320 RRLITEDKIRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQII 379 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GA RREIGHG L RA+ VLP +FPY + Sbjct: 380 DGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLEEFPYAI 439 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 440 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLE 499 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ R Sbjct: 500 DHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEATIATPR 559 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L+L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V+I SS A I Sbjct: 560 LELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIFSSDQAAI 619 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R A SDV Sbjct: 620 NRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDV 679 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ G+ V VK++ D++G++ SMK + Sbjct: 680 LEIGEEVDVKVIKVDEKGRVDASMKAL 706 >gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A str. ATCC 19397] gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A str. Hall] gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. Hall] Length = 702 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + AI+FG ECK ++ EA++K K EP++ + + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P ++ Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQSE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016] gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 715 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 ++ AGR LK++ ++ S+ +L +YG+TVVL ++G DFFPL++ Y+ Sbjct: 10 EVIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYE 69 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 70 ERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDN 129 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 P++V+M AS AL +S +PF PV V ++G +++NP L D ++ +L+L V T++ Sbjct: 130 LPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE 189 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239 V+MVE A ++ ED++ DAIIFG ECK + ++ K K+ D D K Sbjct: 190 RVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKK---DEPDLYKVNED 246 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 LEEE+ + ++ + +I ++ R K + D+ +K+ FS +++ N+ +I V ++ Sbjct: 247 LEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRVK 305 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR ++L + R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+ D Sbjct: 306 KEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGD 365 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + +M HYNF +TGEV + P RREIGHG LA +A+ P++P QF Sbjct: 366 VQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQF 425 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV +D IL+ Sbjct: 426 PYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILT 485 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKV GT+ GITA+Q D KI G+S + L++A+ RL+IL +M + Sbjct: 486 DIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQ 545 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E R ++ ++ P+ IM+IPPD+IR+VIG GGKVI I+ +TG K++I +DG + + S Sbjct: 546 CIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMS 605 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A ++I +T V +IY G+V K+ +FGAFV ++GLVHIS+L RV Sbjct: 606 EDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRV 665 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D+V GD + VK+++ D++G+I LS K Sbjct: 666 NKVEDIVSVGDEILVKVIEIDNQGRINLSRK 696 >gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Bf] gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum Ba4 str. 657] gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Bf] gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Ba4 str. 657] Length = 702 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 445/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + AI+FG ECK ++ EA++K K EP++ + + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADISEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P + Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC 7420] gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC 7420] Length = 715 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 302/691 (43%), Positives = 437/691 (63%), Gaps = 14/691 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L G +A Q+ G+VL G+T VL T ++G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAG-REGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E L SR+IDR +RPLF +++ Q++ + D + P V Sbjct: 67 AAGRIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++ + +PF GP+ +V + +++NP E D G LDL V+G+ V+M Sbjct: 127 LAVTGASVAVLQAQIPFYGPMAAVRVGLVGDDFIINPTYREIDNGDLDLVVAGSPQGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246 VE ANQL E +++AI FG+ + +I A L K E I + + S +LEE + Sbjct: 187 VEAGANQLPERDIIEAIEFGYEAVQDLIAAQENLLKELGIEIIQAEPPETSSELEEFIRD 246 Query: 247 MIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVSVFE 296 + ++ +S F +K+ R + +D++K+ + +E ++ N+ + SVF+ Sbjct: 247 RATKPIKKVLSQFDFDKHDRDEALDEIKENEILAPIAERPEDDPLRVAAANDQLLSSVFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 + K++R+ +++ VR+DGR + VR +S QVGLL R HGS LF RG TQ + VTLG Sbjct: 307 SLTKKLMRSQIVEDGVRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVTLG 366 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T D Q +D L+ + ++ HYNF P + GE M +P RREIGHG LA RAI P+LP Sbjct: 367 TPGDAQMLDDLNPEEEKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERAIIPILPP 426 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+GD+ I Sbjct: 427 QNEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEVRI 486 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+ + A++QAK RLHIL +M Sbjct: 487 LTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPMETVAKAIEQAKPARLHILEKM 546 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + R L F PR+ M I PD I VIG GGK I+GI EQTGAKV+IDDDGT+ + Sbjct: 547 LAAIDKPRPDLSAFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEQTGAKVDIDDDGTITV 606 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 ++ + + A +I+ +T E +Y G+V +++ GAFV ++G++HISQL+ Sbjct: 607 SAVEGEKAKKAITLIQGMTRRLEEGDVYAGRVTRIIPIGAFVEVLPGKEGMIHISQLADY 666 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V VK+ + D++G+I L+ Sbjct: 667 RVGKVEDEVAVGDEVIVKVREIDNKGRINLT 697 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 16/201 (7%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGT-REDEQYV 363 V LDK + DGRD I + GLL G S+ I GDT +V T RE ++ Sbjct: 2 VELDKSISFDGRD------IRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFL 55 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 L + + +P G + R G P + RL R + P+ P + + Sbjct: 56 PLL--VDYEERLYAAGRIPG--GFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQI 111 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + + + V G+S+A++ A +P P+A + +GLV GDDFII + + E Sbjct: 112 VATTLSMDEQVPPDVLAVTGASVAVLQAQIPFYGPMAAVRVGLV--GDDFII--NPTYRE 167 Query: 484 DHLGHMDFKVAGTDSGITAMQ 504 G +D VAG+ G+ ++ Sbjct: 168 IDNGDLDLVVAGSPQGVIMVE 188 >gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter xylanophilus DSM 9941] gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 686 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 296/685 (43%), Positives = 431/685 (62%), Gaps = 8/685 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 +EI R + LETG++ARQ+ GAV A +G+T VL+T + G F PL+V+ +ER Sbjct: 3 LEIPVGERAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEER 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 + GKIPGG+L+RE +P+E IL +R+ DR IRPLF K Y E QVI V+ D E+ Sbjct: 63 MSSAGKIPGGFLKREGKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENPY 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 VVSMV ASAAL LS +PF GP+ +V + +G ++LNP + ++ LD+ V+GT++A Sbjct: 123 DVVSMVGASAALALSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEESDLDIVVAGTKEA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 + MVE A +++EDVV++A+ + EAI + A +E + + EE+ Sbjct: 183 ITMVEAGAREVTEDVVVEALEVAQGVIREQAEAIERWAAEHGEEKQPFEEPGENPFVEEL 242 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 E ++ ++ R + ID LK+++V S E ++ +Q + R Sbjct: 243 RGAYLERIKEGLISTDRRARHEAIDLLKEELVEGRSEEEVPL----VLDALAQLQKEAFR 298 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L+ + R D R + +R +A+ +L R HG+ LF RG+TQ + + L Q +D Sbjct: 299 KLYLEDRKRTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRLD 358 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 +L +M HY F P +TGE R+G P RREIGHG LA RA+ PV+P +FPY +R Sbjct: 359 TLEPQTTKRYMHHYYFPPYSTGETGRLGPPRRREIGHGALAERALLPVIPSEEEFPYAIR 418 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I+SE+ ES+GSSSMA+VCGS+LALMD GVPI PVAG+AMGLVK+GDD++IL+DI G ED Sbjct: 419 IISEVLESNGSSSMASVCGSTLALMDGGVPIKAPVAGVAMGLVKEGDDYVILTDIQGLED 478 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H+G MDFKVAGT GITA+QMDMKI G+S ++ AL+QA+RGRL IL+ M + ++E R Sbjct: 479 HMGDMDFKVAGTRDGITALQMDMKITGVSAELLKEALEQARRGRLQILDIMREEIAEPRP 538 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ + PRVE++ IP D+I +IG GGK I + ++ G +++++DGTV +A ++ Sbjct: 539 EISDHAPRVEVIQIPTDKIGLLIGPGGKTINALQDEYGVNISVENDGTVYVAGVEGMSVK 598 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSD 662 AA I+ +T E IY G+VVK +FGAFV RDGL+HIS+L+ +RV + D Sbjct: 599 AAVSAIKGMTKEVEAGDIYVGKVVKTTNFGAFVELTPGRDGLLHISRLAPGKQRVRRVED 658 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 V+ EGD V V++L+ D + +I L M Sbjct: 659 VLNEGDVVKVRVLEIDKQNRISLEM 683 >gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 697 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 297/686 (43%), Positives = 446/686 (65%), Gaps = 9/686 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGR +++ G++A Q++GA L YG+TVVL T + ++G DFFPL+V+Y+E+ YA Sbjct: 8 EIAGREMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYA 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+++RE RP+E IL +R+IDR +RPLF + Y+N+ QV+ + D ++ P +V Sbjct: 68 VGKIPGGFIKREGRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDNQPDIV 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +MV +S AL +S +PF+GP V ++G+YV+NP ++ S ++L ++GT+ A++MV Sbjct: 128 AMVGSSIALTISDIPFDGPTGSVFVGMVDGEYVINPTEEQRAKSKIELNLAGTKSAIMMV 187 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E A +SE+ +L AI+ GH E K + E I ++ + KE + K +EE+ + + Sbjct: 188 EAGAKIVSEEEMLGAILKGHEEIKKICEFIEEIQREVGKEKA---QYEVFKPDEEIKEKV 244 Query: 249 ----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 KE L + +K +R ++ ++ K K+ +F+ E + + +I + E I+ + VR Sbjct: 245 IAFGKELLVEAINQDDKIIREEKTEEAKDKIYEHFNEELEEFGK-DIDAAIESIEVEEVR 303 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++++ R DGR + +R +S++VGL +RTHGS LF RG TQ + + TL + Q +D Sbjct: 304 RGIIEEDRRPDGRALDEIRPLSSEVGLFRRTHGSGLFKRGQTQVLSITTLAGLSEVQVID 363 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L ++ HYNF P + G+ M P RREIGHG LA RA+ PVLP +FPY +R Sbjct: 364 GLGDDTPKRYIHHYNFPPYSVGDTKPMRGPGRREIGHGALAERALIPVLPTEEEFPYAIR 423 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ S+GSSS A+VCGS+L+LMDAGVPI +PVAGIAMGL+++ IL+DI G ED Sbjct: 424 VVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKQPVAGIAMGLIEEHGVIKILTDIQGLED 483 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H G MDFKVAGT GITA+QMD+K+ GI + I+ AL++A+ RL IL+ + + E R Sbjct: 484 HFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEEALEKARIARLQILDNIEATIDEPRE 543 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L F P + I+ I P++I VIG GGKVI I+EQTG K++IDDDG V + S+ + + Sbjct: 544 KLSPFAPIIYIILIDPEKIGEVIGSGGKVINKIIEQTGVKIDIDDDGKVSVISNDHEKAQ 603 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A ++I I E+ IY G+V K+M FGAFV +GL+HIS++ +R K D + Sbjct: 604 EAIDIIEGIVKEVEIGDIYNGKVKKLMKFGAFVEIKKGTEGLLHISEIDHKRTEKVEDEL 663 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD+V VK++D D++GKI LS K + Sbjct: 664 KVGDSVVVKVIDVDEQGKISLSRKAL 689 >gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] Length = 693 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 297/701 (42%), Positives = 452/701 (64%), Gaps = 23/701 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M V + + E+AG+ LK++ G++A Q+ GA L YGET VL TVV K+ DFFPLT Sbjct: 1 MRQVCSFKREFAGKELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLF+K ++NE QVI+ V+ + Sbjct: 61 VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179 D E+S + S++ AS A++L+GLPF+GP+ ++ + ++ +NP + + LDL V+ Sbjct: 121 DHENSTDIPSIIGASCAIILAGLPFKGPIGAVRIGWDGNEWYINPPVTLSNSLLLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDS 234 GT+DAVLM+E + ++ ED+ L+ II H+ VI E +S++ +P V+D Sbjct: 181 GTKDAVLMIEGDGKEVPEDIFLEGIIKAHSAMLDVINFQEEILSQINPAPFNYDPFVVDE 240 Query: 235 KDFSKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + L+ + + D +R + F P K R K ++DLKKK++ +F + GEI + Sbjct: 241 R----LKRAVLDYVTVDQIRDAIFTPSKSERQKALEDLKKKVIEHFKPIY-----GEITA 291 Query: 294 VFEDI----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 ++I K++ V+L++K R+DGR +R +S +VG+L+R HGS+LF RG+TQ + Sbjct: 292 QVDEIINQEAKKILSQVVLEEKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVL 351 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VVTLG E EQ ++S+ ++ ++ HYNF P + GE + P RREIGHG LA RA+ Sbjct: 352 SVVTLGAGE-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERAL 410 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 P++P+ +FPYT+R+VSE+ S+GS+SMA+VCGSSL+LMDAGVPI VAG+AMGL+K+ Sbjct: 411 LPLIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKE 470 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD F +L+DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S I+ L+QAK R Sbjct: 471 GDRFEVLTDIQGLEDALGGMDFKIAGTRNGITAVQLDIKVDGLSYEIIERTLKQAKEARY 530 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL+ M K + + R ++ + PR+ ++ I P +I ++IG GK I+ I+E+T +NI Sbjct: 531 QILDIMEKTIPQPRPEISPYAPRIMVLEINPSKIGDLIGPSGKNIKKIIEETHTTINIKP 590 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +G V I++ E A +M++ T + I+ G+V++V D+GAFV + GL+HI Sbjct: 591 EGLVYISAPDQESAEKAAQMVQDYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHI 650 Query: 650 SQLSTERVAK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S+ T K T + + GD + +K+ D G+I L+ K Sbjct: 651 SKYKTTGTGKNQTREEINLGDEILIKVDSIDSSGRISLTRK 691 >gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 714 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/688 (42%), Positives = 449/688 (65%), Gaps = 11/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGR LK+ G++A Q++GA L YG+TVVL TV ++ +DG DFFPL+V+++E+ Y Sbjct: 7 LDLAGRTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGK+PGG+++RE +P+E IL SR+IDR IRPLF + Y+N+ QV+ V+ D + P + Sbjct: 67 AVGKMPGGFIKREGKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDCQPDI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V M+ +S AL +S +PF+GP V Y++G+Y++NP E + S + L VSGT+ A++M Sbjct: 127 VGMIGSSIALSISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSDIYLVVSGTKTAIMM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE AN +SE+ +L+AI+ H E K + + + ++ K+ S + K EE+ Sbjct: 187 VEAGANIVSEETMLNAILTAHEEIKKICDFVDQIKAEVGKDKT---SYEVFKPNEEIKTK 243 Query: 248 IKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 +KE S + P+K +R +++++ K+ + +F +++ + + E +V Sbjct: 244 VKE-YGTSMIVDAINEPDKIIRIEKVEEAKENIRKHFEELMEEFSKDIEIIMEEIEVTEV 302 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++ D+ +R DGR + +R +S++ G+L RTHGS LF RG TQ + + TL D Q Sbjct: 303 RRGIIEDE-IRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQV 361 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + ++ HYNF P + G+ M P RREIGHG LA +A+ PV+P +FPY Sbjct: 362 IDGLGDDKPKRYIHHYNFPPFSVGDTKPMRGPGRREIGHGALAEKALLPVIPTEEEFPYA 421 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ S+GSSS A+VCGS+LALMDAGVPI PVAGIAMGL+++ IL+DI G Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLALMDAGVPIKAPVAGIAMGLIEENGITKILTDIQGL 481 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDH G MDFKVAGT GITA+QMD+K+ GIS+ ++ +AL++AK+ RL IL ++ +SE Sbjct: 482 EDHFGDMDFKVAGTKEGITAIQMDIKVEGISKEVLAVALERAKKARLEILEHLNTTISEP 541 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P + I+ I P++I VIG GGK+I I+E+TG K++ID+DG V + S + + Sbjct: 542 RKELSPYAPIIHIIIIDPEKIGEVIGTGGKMINKIIEKTGVKIDIDEDGKVSVLSENSEK 601 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +I SI EV I++G+V K+M FGAFV + L+HIS++ ER K D Sbjct: 602 AKEAISIIESIVKEVEVGDIFEGKVKKIMKFGAFVELKKGVEALLHISEIQHERTNKVED 661 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++K GD V VK+++ D+ GK+ LS KV+ Sbjct: 662 ILKIGDIVKVKVIEIDEDGKMSLSRKVL 689 >gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1] gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1] Length = 722 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/705 (41%), Positives = 439/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251 +SED++L AI H K + A + + K P+ + K F + ++E+ I D Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIF-EFKKELRDFIYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K +FSS + NE F+D + ++VR +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEKEIVRNSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K+R DGR +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVSEI 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT++GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEK 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------------- 655 I SI P+V +IY+G V K+ FGAF+ ++G + S + Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGHGNRY 671 Query: 656 -RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687 R D ++ EG + V+++D D GKI L + Sbjct: 672 SRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716 >gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum H04402 065] Length = 702 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 446/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + AI+FG ECK + EA++K K EP++ + + Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIAAFQEEAVAKFGK-TKNEPVLYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADIAEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P ++ Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] Length = 748 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 288/703 (40%), Positives = 438/703 (62%), Gaps = 14/703 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F+ ++NE QVI V+ D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G+Y++NP + + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSK 239 A+ MVE A +LSED++L+A++ GH + +I E ++ + K AK ++ + D Sbjct: 183 AINMVESGAKELSEDIMLEALLRGHKAIQELIAFQEEIVAAVGKEKAKVELLQVNAD--- 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVSV 294 L+ E+ + DL+ + + EK R + +K+ + + E S ++ + Sbjct: 240 LQAEIVEKYNADLQKAVQVEEKKAREAATEAVKETVKADYEAKFAEDESLSTIMRDVAEI 299 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E ++ VR ++ + KVR DGR + +R + AQ+ L + HGS LF RG TQA+ V+TL Sbjct: 300 LEQMEHAEVRRLITEDKVRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTL 359 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 360 APMGETQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLP 419 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ Sbjct: 420 SLEDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 479 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDL 539 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 + ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+GTV+ Sbjct: 540 IQATIAEPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDDEGTVQ 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I SS I +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ Sbjct: 600 IFSSDQVAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAW 659 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 R A SDV++ G+ V VK++ D++G++ SMK + KP Sbjct: 660 TRTANVSDVLELGEEVDVKVIKVDEKGRVDASMKALLPRPPKP 702 >gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri DSM 555] gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555] Length = 708 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 289/691 (41%), Positives = 445/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 ++ AGR LK++ ++ S+ +L +YG+TVVL ++G DFFPL++ Y+ Sbjct: 3 EVIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 P++V+M AS AL +S +PF PV V ++G +++NP L D ++ +L+L V T++ Sbjct: 123 LPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+MVE A ++ ED++ DAIIFG ECK + ++ K K+ D D K+ E+ Sbjct: 183 RVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKK---DEPDLYKVNED 239 Query: 244 MSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++ + ++ + +I ++ R K + D+ +K+ FS +++ N+ +I V ++ Sbjct: 240 LEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRVK 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR ++L + R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+ D Sbjct: 299 KEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + +M HYNF +TGEV + P RREIGHG LA +A+ P++P QF Sbjct: 359 VQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV +D IL+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKV GT+ GITA+Q D KI G+S + L++A+ RL+IL +M + Sbjct: 479 DIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQ 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + E R ++ ++ P+ IM+IPPD+IR+VIG GGKVI I+ +TG K++I +DG + + S Sbjct: 539 CIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A ++I +T V +IY G+V K+ +FGAFV ++GLVHIS+L RV Sbjct: 599 EDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D+V GD + VK+++ D++G+I LS K Sbjct: 659 NKVEDIVSVGDEILVKVIEIDNQGRINLSRK 689 >gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM 8797] gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM 8797] Length = 711 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 294/690 (42%), Positives = 431/690 (62%), Gaps = 8/690 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE E G+ L L TG++A+Q+ GAVL YGETVV + G DFFPLTV+Y+ER Sbjct: 5 VECEVGGQKLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPG-RPGIDFFPLTVDYRER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A GK PGG+L+RE RPT EIL +R+ DR IRPLF K + +E Q+ NVM D + P Sbjct: 64 AAASGKFPGGFLKREGRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEP 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V+S+ ASAAL LS +PF+GP+ ++ I+G+ ++ P ++ +G LDL V+GT ++V Sbjct: 124 DVLSINGASAALCLSPVPFQGPIGAVRIGRIDGELIVFPNHEQIAEGDLDLIVAGTIESV 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 LM+E NQ+ ED +L+AI+ H E + + +L + EP ++ + ++ Sbjct: 184 LMIEGFGNQIPEDEMLEAIMLAHTELAKICKLQLELREKAGIEPFEYEAPPENPFVAKLD 243 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 I + L + K R +++++++ F E + E G+ F D++A Sbjct: 244 DAIFQKLSSAMQSTVKAERRDGAKAIQEELINKFFPEGADTTEDGATIGDFKEAFHDLEA 303 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR + + + R+DGR + +RD++ + G L R HGS++F RG+TQ++ VTLGT D+ Sbjct: 304 KAVREMAITGR-RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTSRDK 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q VD L + FM+HY F + GE + P RREIGHG LA R++ PVLP FP Sbjct: 363 QRVDGLFEEELQQFMLHYYFPSFSVGECRPIRGPGRREIGHGCLAERSVLPVLPNEEDFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R++S+I ES+GSSSMA+VC ++LALMDAGVP+ +PVAGI++GLV G ++ IL+DI Sbjct: 423 YTIRVISDILESNGSSSMASVCSATLALMDAGVPLRQPVAGISIGLVTKGKEYKILTDII 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDH MDFKVAGT GIT +Q+D+K GI+E I+ L+QAK+ RL +L M + Sbjct: 483 GDEDHFCDMDFKVAGTQKGITGIQLDLKNDGINEEIIKATLEQAKKARLELLRTMLTAIR 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R ++ + PR+ I P++I +IG GGK IR I E+TGA ++I DDGTV ++ ++ Sbjct: 543 RPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDDGTVTVSGGNV 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + +E A I ++T+ V +IY G V + +FGAF+ +DGL HIS+LS V Sbjct: 603 SVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSV 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SD+ K GD + VK++ DD+ ++KLS K V Sbjct: 663 SDICKMGDRLQVKVIAVDDQNRVKLSRKAV 692 >gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum subsp. pallidum str. Nichols] gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum subsp. pallidum SS14] gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum subsp. pallidum SS14] gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 702 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 288/695 (41%), Positives = 444/695 (63%), Gaps = 6/695 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H++ PL LE+G +ARQ++G+V T +LATV ++G D+ PLTV++ Sbjct: 3 HSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFN 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YAVGK+PGG+++RE RP + EILISR+IDR +RPLF K + + V+ + D+ Sbjct: 63 EKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMVH 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++VA+SAA+ LS +PF GPV +V Y+NG YV+NP + D S+++ V+GT+ Sbjct: 123 PHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTRQ 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEE 242 + MVE A ++SED++L A+ K + + +L +C KE VI S + Sbjct: 183 GITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGRD 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAK 301 + ++ L + + K R D +K+ + ++++ + + + ++F +++ + Sbjct: 243 RIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEYE 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 ++R +LD+ +R+DGR + +R I+ +VG+L R HGS++F RG+TQ++ VVTLG D Q Sbjct: 303 ILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 D + G +R +F++HYNF P + GE+ RMG RREIGHG LA R++ V+P QFPY Sbjct: 363 VYDDIEGDRRENFILHYNFPPFSVGEIGRMGV-GRREIGHGCLAHRSLSAVIPDPEQFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMATVC +L+L+ AGVPI KPVAGIAMGL+ DG + ILSDI G Sbjct: 422 TVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDILG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 +EDHLG MDFKVAGT GIT QMD+K+ +S ++M ALQQA+ GRLHIL+ M++ +S Sbjct: 482 EEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTISA 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 + + + P +E I ++I +IG GGK ++ + +Q +N D DGTV ++ Sbjct: 542 PSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDAQ 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+ + +T+ P V ++Y+G V ++++FGAFV ++GL H+S+LS RV+K S Sbjct: 602 SVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKVS 661 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 DV++EG + VKL+D D G++ LS +D GK Sbjct: 662 DVLQEGQRICVKLIDIDRMGRLNLSY--IDALEGK 694 >gi|322374786|ref|ZP_08049300.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300] gi|321280286|gb|EFX57325.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300] Length = 737 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 284/694 (40%), Positives = 436/694 (62%), Gaps = 8/694 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+V+ YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + + Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF+GP+ G QV Y++GQ ++NP ++ + SL +L V+GT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSE+++L+A++ GH K +I ++ KE ++ ++L+ E+ Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303 DL+ + + EK R +K ++ + + +++ E ++ + E ++ V Sbjct: 249 NSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + KVR DGR + +R + A V L R HGS LF RG TQA+ V+TL + Q + Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG+++ +L+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + + E R Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEETIPEVR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +T K++ID++G V I SS I Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETAVKIDIDEEGNVSIYSSDQDAI 608 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+++ R D+ Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V GD V VK++ D++G++ SMK + KP Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702 >gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 702 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 296/680 (43%), Positives = 439/680 (64%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G L + G++A Q++G L G+T++L T V ++G DFFPL +YQE+ YAVGK Sbjct: 12 GSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE + ++ ILISR +DR +RPLF + + N+ QVI D ++ P ++ + Sbjct: 72 IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF GPV V Y++G++++NP D+ ++ SLDL V+GT DA+ MVE Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVAGTADAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN+LSED +L+A++ H E K + I + KE + + + ++L+ ++ ED Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEEVETELQRKIKDKYTED 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I+ +++K F E +E EI + I K VR ++ K Sbjct: 252 IKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +SA+ GLL R HGS LF RG TQ + V+TLG+ +EQ +DS++ + Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 +H YNF P G++ + P RRE+GHG LA RA+ PVLP T FPYT+R+VSE+ Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKDFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI++ ++ AL A RL IL+ ++ + + R L ++ Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSAIDKPREDLSKYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + + P+++R+VIG GGK I I+++TG K+ +DDG + +AS+ + A EMI Sbjct: 551 PRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASNDGDSGKKAIEMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +SI P+ IY+G+V ++M+FGAFV ++GL+HISQ+ T+R K DV+K GD V Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690 >gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822] gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822] Length = 718 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 307/698 (43%), Positives = 442/698 (63%), Gaps = 26/698 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKVPG-REGVDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF +++ QVI + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + +++NP E + G LDL V+G+ + V+M Sbjct: 127 LAVTGASLAVILAKIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAGSPEGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I A I L ++ + E ++ + E Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIAAQLDVIQTLGIEIVSSEEPPVNQPVLEFITE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV-------- 294 S IK+ L S + +K R +D++K V E +S E + V V Sbjct: 247 RTSDEIKKVL--SQYDLDKTARDLALDEIKAAKVQ---EEIASLPEEDPVKVAVTEDSKL 301 Query: 295 ----FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 F+D+ K++R ++++ VR+DGR + VR IS +VGLL QR HGS LF RG TQ + Sbjct: 302 VSNLFKDVTKKLMRAQIINEGVRVDGRKLDEVRPISCRVGLLPQRVHGSGLFCRGLTQVL 361 Query: 350 VVVTLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + TLGT D Q D L ++ HYNF P + GE M +P RREIGHG LA RA Sbjct: 362 SLATLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 421 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I PVLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K Sbjct: 422 ITPVLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIK 481 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +GD+ IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+ A++QA+ R Sbjct: 482 EGDEVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARPAR 541 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL++M V+ + R +L + PR+ M I PD I VIG GGK ++ I EQT K++ID Sbjct: 542 LHILDKMLSVIEQPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKIDID 601 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV I++S + E A+++I ++T ++Y G+V +++ GAFV ++G++H Sbjct: 602 DDGTVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGMIH 661 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 ISQL+ RV K D + GD V VK+ + D++G++ L+ Sbjct: 662 ISQLAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLT 699 >gi|222152456|ref|YP_002561631.1| polynucleotide phosphorylase/polyadenylase [Streptococcus uberis 0140J] gi|254782739|sp|B9DTE3|PNP_STRU0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222113267|emb|CAR40790.1| polyribonucleotide nucleotidyltransferase [Streptococcus uberis 0140J] Length = 732 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 282/693 (40%), Positives = 437/693 (63%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFSTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP + + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKAQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVSVFED 297 E+ DL+ + + EK R + +K+ + + + + E+ + ++ + E Sbjct: 243 EIVAKYNADLQKAVQVEEKKAREAATEAVKETVKAEYEAKFAEDENLATIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + AQ+ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 363 GDTQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIET 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V+I S Sbjct: 543 TIPAPRPELAPTAPKIDTIQIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ +E+I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQAAIDRTKEIITSLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ DD+G++ SMK + Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695 >gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8801] gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8802] gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801] gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802] Length = 718 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 304/695 (43%), Positives = 446/695 (64%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRATG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF + +++ Q+I + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187 +++ AS A++ + +PF GP+ +V I +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASIAVIAARIPFFGPMAAVRVGLIGDDFIINPTYREIEIGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A + + + EP ++ S + + Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIQAQRDVMEALDIPLVIGEPPAVNEVLQSFISD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS- 293 S+ IK+ L +K R +Q+D++K+ ++ +E ++ E + VS Sbjct: 247 RASESIKKVLMQYNL--DKNARDEQLDEIKETAITNAIAELPEEDPVKVAATEEPKAVSN 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 +++D+ K++R+ ++ VR+DGR + VR IS++V LL +R HGS+LF RG TQ + + Sbjct: 305 LYKDLTKKLMRSQIITDGVRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLSLA 364 Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q D L ++ HYNF P + GE + +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQDLADDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAITP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+GD Sbjct: 425 ILPPQEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGD 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S I+ A++QA RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMEIVAKAIEQALPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M + LS R L + PR+ M I P+QI VIG GGK I+GI EQTG+K++I DDG Sbjct: 545 LDKMMETLSTPRKNLSPYAPRLLTMKIDPEQIGLVIGPGGKTIKGITEQTGSKIDIADDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ + E A+++I ++T ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIAALEAEKAEKAKQIIYNMTRKLNEGEVYMGRVTRIIQIGAFVEVLPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K D V GD V VK+ + D +G++ L+ Sbjct: 665 LAEGRVGKVEDEVAVGDEVIVKVREIDAKGRLNLT 699 >gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353] gi|224954232|gb|EEG35441.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353] Length = 696 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 298/692 (43%), Positives = 434/692 (62%), Gaps = 8/692 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V +E AGR L +E G++A Q++GA L YG+TVVL+T ++G DFFPL+V + Sbjct: 2 VKQFSMELAGRTLTVEIGKVAAQANGAALMRYGDTVVLSTATASEKPREGIDFFPLSVEF 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+ + VM D + Sbjct: 62 EEKMYAVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMAVDPD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 SP V +M+ AS A +S +PF+GP+ G ++ I+G++++NP D+ S L L V+ T Sbjct: 122 CSPEVTAMLGASVATSISDIPFDGPIAGTRIGLIDGEFIVNPTADQQLVSDLALTVASTA 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241 + V+M+E AN++ ED +++AI H K VI+ I ++ + C KE + D + L Sbjct: 182 EKVIMIEAGANEVPEDKMIEAIFKAHEVNKEVIKFIDRIVEECGKEKHEYEHVDTPEDLW 241 Query: 242 EEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 +M I E + + F K VR + I +K+K+ ++ EH W +V++ Q Sbjct: 242 NDMVDFITPEAMEEAVFTDVKQVREENIRQIKEKLEERYAEEHEDWLPLIDDAVYK-FQK 300 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ LL R HGS +F RG TQ + + TL + Sbjct: 301 KTVRKMILKDHKRPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAPLSEA 360 Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 361 QKIDGLDANVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEDEF 420 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI KPVAGI+ GLV DD+I+L+ Sbjct: 421 PYAIRTVSETLESNGSTSQASICASTLSLMAAGVPIKKPVAGISTGLVTGDSDDDYIVLT 480 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ +I+ A+ + K R HIL + M Sbjct: 481 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTPDIIREAISRTKEAREHILTDVME 540 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+S R +GE+ P++ M + PD+I +IG GK I I+++TG K++I+D+G V I Sbjct: 541 PVISTPRDHVGEYAPKIMQMHVDPDKISEIIGKQGKTINAIIDETGVKIDINDEGRVDIC 600 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 I+ A E+IR I + E KIY+G+VV++M+FGAFV +DGL+HIS+LS ER Sbjct: 601 GVDQVMIDRAMEIIRLIVEPVEAGKIYEGEVVRIMNFGAFVQLAPNKDGLIHISKLSKER 660 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K DVV GD V VK+L+ D G+I L+++ Sbjct: 661 VEKVEDVVNIGDKVKVKVLEIDKMGRINLALR 692 >gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1] gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1] Length = 722 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF P +V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 +SED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K +FSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEFLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ G KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFGVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAF+ A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671 Query: 664 VK---------------------EGDTVWVKLLDFDDRGKIKLSM 687 + EG + VK++D D GKI L + Sbjct: 672 FRFGGGGESIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 701 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 294/690 (42%), Positives = 442/690 (64%), Gaps = 16/690 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDKVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E A ++ ED++L+AI+ E K ++E I + K K + + + + EE+ Q Sbjct: 187 MIEAGAQEIPEDIMLEAIMTAQEEIKKIVEFIEGIVKEVGKPKMQYEKR---VVPEEIKQ 243 Query: 247 MIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDIQ 299 ++E + IP+K R K++D+LK++++ F E E ++ V +++ Sbjct: 244 KVRELAYEKAYQYVQIPDKIERDKKLDELKEEVLKAFEGE----TEDTLLLVDDALYNLE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ + Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P +F Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPYSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478 PYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ K+ FI L+D Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFITLTD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED G MDFKVAGT GITA+Q+D+KI G+++ I+ AL QA+ RL IL+ M V Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + +A+ Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAKTNVKIDIEPDGRIFVAAP 599 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A MI I EV + + G+V + +GAFV ++GLVHISQL +++ Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDNKKLK 659 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +VVK GD V VK++ D G+I LS K Sbjct: 660 SVDEVVKVGDLVLVKVIGIDRLGRIALSRK 689 >gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum 5521] gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum 5521] gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 701 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/693 (42%), Positives = 448/693 (64%), Gaps = 15/693 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + + E AGR LK+E G++ S+ A +YG+TV++ V ++G DFFPL+V Y+ Sbjct: 3 NVLSTEIAGRELKVEFGKVGMLSNAATFTSYGDTVIMTNVNASEEPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP+E IL R +DR+IRPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSVEKDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183 P ++++ AAS AL LS +P+ PV QV I+G+ V NP ++ L L V T++ Sbjct: 123 IPEILAINAASLALCLSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREESILHLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV--IDSKDF 237 V+M+E N++ ED +++AI +G +EC+ +I EA++K K EP++ ID Sbjct: 183 RVMMIEAGGNEIPEDKMIEAIEYGFDECQKIISFQEEAMAKFGKK-KDEPLLYTIDET-- 239 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 LE+E+ + ++ + +I +K R ID + +K+ + F+ ++ N G+I V Sbjct: 240 --LEKEVKDFAFDMVKEAMYIMDKDERNAAIDAVNEKVKAEFAEKYPD-NLGDIKEVLYT 296 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q K+VR ++L++K R DGR + VR + +VG+L RTHG+ LF RG TQ + V TLG+ Sbjct: 297 TQKKIVRNMLLNEKRRPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSI 356 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D + TQ +M HYNF + GEV + P RREIGHG LA RA+ P++P Sbjct: 357 SEIQILDGIDETQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEE 416 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ D + Sbjct: 417 EFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSQEQV 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 ++DI G ED G MDFKVAGT GIT++Q+D K+ G S N++ A++ A++ RL I++++ Sbjct: 477 ITDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKI 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + E R + + P+ E+M I PD+IR+VIG GGKVI I+ TG K++I +DGTV + Sbjct: 537 NECMPEPRKDVSLYAPKTEVMTINPDKIRDVIGAGGKVINKIIADTGVKIDIKEDGTVFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +SS + AA+++I +T ++Y G+V K+ FGAFV ++GLVHIS+L+ E Sbjct: 597 SSSDHEGVNAAKKIIEGLTKEVVAGEVYLGKVTKITTFGAFVEILPNKEGLVHISKLAKE 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ + D++G+I LS K Sbjct: 657 RVEKVEDVVSAGDEILVKVTEIDNQGRINLSRK 689 >gi|326791492|ref|YP_004309313.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum DSM 5427] gi|326542256|gb|ADZ84115.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum DSM 5427] Length = 705 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 298/693 (43%), Positives = 436/693 (62%), Gaps = 16/693 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + AGR L +E G++A ++G+ YG+T++LATVV + K+G DFFPL+VNY+E+ Y+ Sbjct: 8 QLAGRELSVEIGKVAGLANGSATVRYGDTMILATVVAADAPKEGIDFFPLSVNYEEKFYS 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VG++PGGY++RESRP+E IL SR+IDR +RPLF K Y+N+ + V+ D + SP V Sbjct: 68 VGRLPGGYIKRESRPSEKAILTSRVIDRPMRPLFPKDYRNDVVITTTVLSVDQDCSPEVT 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+AAS + +S +PF GPV QV ++G V NP +E Q S L L VS T+D V+M+ Sbjct: 128 AMIAASLVVDISDIPFAGPVGSVQVGLVDGNLVFNPNQEERQKSDLALTVSSTKDKVMMI 187 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-------E 241 E AN++ ED++ DAI+ GH + V++ I + C K ++D+ K Sbjct: 188 EAGANEVPEDIMFDAIMKGHEFNQQVVQFIEAIKADCGKA----KNEDYVKFGVPAEIYN 243 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E +S + + + + F +K VR Q+ LK+K++ + + + F + K Sbjct: 244 EIVSHIGDKQMEEAVFTDDKQVREVQLKALKEKVIVALTEAGKEEDLVYLEEAFYQFEKK 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L + R DGR + +R ++A+V L+ R HG+ LF RG TQ + V TL + Q Sbjct: 304 TVRRMILKESKRPDGRALDEIRSLAAEVDLVPRVHGTGLFTRGQTQVLTVTTLAALSEMQ 363 Query: 362 YVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D L + +M HYNF P + GE AP RREIGHG LA RA+ PVLP +FP Sbjct: 364 TLDGLDELEISKRYMHHYNFPPYSVGEARAPRAPGRREIGHGALAERALVPVLPTEQEFP 423 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478 Y +R VSE+ S+GS+S A++CGS+L+LM AGVPI PVAGI++GLV + DDF++L+D Sbjct: 424 YAIRTVSEVLSSNGSTSQASICGSTLSLMAAGVPIKAPVAGISVGLVTGETADDFVLLTD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537 I G ED G MDFKV GT GITA+QMDMKI G++ I+ AL+ K+ R +IL+E M K Sbjct: 484 IQGLEDFFGDMDFKVGGTHKGITAIQMDMKIKGLTPEIIKGALENTKKARFYILDEIMLK 543 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R L + P + + I P++I VIG GK+I I+E+TG K++I+DDG V I Sbjct: 544 AIPAVRDHLSPYAPVITQITIDPEKISEVIGPKGKMINRIIEETGVKIDIEDDGRVFICG 603 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S + + A +MI I E + + G+V+++M+FGAFV ++GLVHISQL+ ERV Sbjct: 604 SDADKAQKAIQMIEGIARPIEEGQEFDGKVMRLMNFGAFVELVPGKEGLVHISQLAHERV 663 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AK DVV GD++ VK+++ D +G+I LS KV+ Sbjct: 664 AKVEDVVAVGDSIKVKVIEIDKQGRINLSHKVL 696 >gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi 80a] gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi JD1] Length = 716 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 8 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 67 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 68 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 188 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 246 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 247 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 306 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 307 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 366 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 367 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 425 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 426 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 485 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 486 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 545 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 546 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 605 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAF+ A++G + S+ + R ++ Sbjct: 606 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 665 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 666 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710 >gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi N40] Length = 716 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 8 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 67 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 68 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 188 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 246 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 247 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 306 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 307 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 366 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 367 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 425 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 426 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 485 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 486 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 545 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 546 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 605 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAFV A++G + S+ + R ++ Sbjct: 606 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 665 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 666 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710 >gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi CA-11.2a] gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi CA-11.2a] Length = 722 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAFV A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a] gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 94a] gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 118a] gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a] gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 118a] gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 94a] Length = 722 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAF+ A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKLRDSKYGSGRFGNSNRY 671 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|313889611|ref|ZP_07823255.1| polyribonucleotide nucleotidyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313122038|gb|EFR45133.1| polyribonucleotide nucleotidyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 742 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 282/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+E+ YA Sbjct: 21 FAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S +V+ Sbjct: 80 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV YI+GQ+V+NP + + SL +L V+G+++A+ MVE Sbjct: 140 MFGSSLALSISDIPFNGPIAGVQVGYIDGQFVINPDKAQMEASLLELTVAGSKEAINMVE 199 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248 A +LSED++L+A++ GH + +I ++ KE ++ + L+ E+ Sbjct: 200 SGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDTDLQAEIVTKY 259 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKK-----KMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 L+ + + EK R +++K+ M + ++ + ++ + E ++ V Sbjct: 260 NSQLQTAVQVEEKKAREAATEEVKEIVKAEYMERFAEDDNLATIMRDVAEILEQMEHAEV 319 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + K+R DGR + +R + AQV L + HGS LF RG TQA+ V+TL + Q + Sbjct: 320 RRLITEDKIRPDGRQIDEIRPLDAQVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQII 379 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE R GA RREIGHG L RA+ VLP FPY + Sbjct: 380 DGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLEDFPYAI 439 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G E Sbjct: 440 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGKNYTVLTDIQGLE 499 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ R Sbjct: 500 DHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEATIATPR 559 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V+I SS A I Sbjct: 560 PELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIFSSDQAAI 619 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E+I + +V ++Y+ +VV++ FGAFV+ D LVHIS+++ R A SDV Sbjct: 620 NRTKEIIAGLVREAKVGEVYRAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDV 679 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ G+ V VK++ D++G++ SMK + Sbjct: 680 LEIGEEVDVKVIKVDEKGRVDASMKAL 706 >gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] Length = 702 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 295/680 (43%), Positives = 438/680 (64%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G L + G++A Q++G L G+T++L T V ++G DFFPL +YQE+ YAVGK Sbjct: 12 GSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE + ++ ILISR +DR +RPLF + + N+ QVI D ++ P ++ + Sbjct: 72 IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF GPV V Y++G++++NP D+ ++ SLDL V+GT DA+ MVE Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVAGTADAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN+LSED +L+A++ H E K + I + KE + + ++L+ ++ ED Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEDVETELQRKIKDKYTED 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I+ +++K F E +E EI + I K VR ++ K Sbjct: 252 IKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +SA+ GLL R HGS LF RG TQ + V+TLG+ +EQ +DS++ + Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 +H YNF P G++ + P RRE+GHG LA RA+ PVLP T FPYT+R+VSE+ Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKDFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI++ ++ AL A RL IL+ ++ + + R L ++ Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSAIDKPREDLSKYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + + P+++R+VIG GGK I I+++TG K+ +DDG + +AS+ + A +MI Sbjct: 551 PRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASNDGDSGKKAIQMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +SI P+ IY+G+V ++M+FGAFV ++GL+HISQ+ T+R K DV+K GD V Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690 >gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC 15579] gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC 15579] Length = 702 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 285/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V+Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF K Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + V+MVE ++ E+ + +AI+FG ECK ++ EA++K K EP + + + Sbjct: 182 ERVMMVEAGGQEIDEETMYNAIMFGFEECKNIVAFQEEAMAKFGK-TKDEPALYKADE-- 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + ++ + +I +K R +D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAALDKVKEKISEEFSEKYEDKG-ADIKEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR IS +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P ++ Sbjct: 358 DVQILDGIAEQESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D + ++ Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIK 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597 Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 598 SNNEPEGVKKAIGIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi B31] gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 156a] gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7] gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b] gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi Bol26] gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia burgdorferi B31] gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 156a] gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7] gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b] gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi Bol26] Length = 722 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAF+ A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 29805] gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 29805] Length = 722 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAFV A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase; PNPase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 696 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 298/685 (43%), Positives = 443/685 (64%), Gaps = 6/685 (0%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 W + LETG+ A+Q+ G+V+ G V+LATV K+GQDFFPLT Y E+ Y+V Sbjct: 9 WGRDSITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEPKEGQDFFPLTCEYTEKAYSV 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+ PGGY +RE++P E+E+L+SR++DR IRP+F + Y +E Q+++ V+ D + S + Sbjct: 69 GRFPGGYFKREAKPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLVQVLSADKQVSVQGHA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 + AASAAL +S +PF GP+ GA++ I G+++LNP +E + LDL V+GT+DA++M+E Sbjct: 129 INAASAALSVSSIPFAGPIAGARIGRIGGEFILNPTNEEITKSDLDLVVAGTKDAIVMIE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLEEEMSQM 247 EA+++S++ ++ A+ F + K + +LAK K+ +V+ + D L ++ + Sbjct: 189 GEASEISKEDMMAALRFAQEQLKFAVAMQEELAKKHGTVKKEVVLKAPD-KDLHAKIREF 247 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRTV 306 + L ++ +K R I + K+ V +F + + ++ + + F +++ +VVR + Sbjct: 248 AFDRLTLANKNADKAKRNDDIKAINKETVEHFKTLLAPEDKTKDIKHFLHELEYEVVREL 307 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L + +R DGR ++ +R IS ++ +L HGS++F RG TQ++ V+TLGT D Q ++L Sbjct: 308 VLGEGIRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETL 367 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G++ +FM+HYNF + GEV R P RREIGHG LA RAI VLP +FPY +R+V Sbjct: 368 EGSKEKNFMLHYNFPAFSVGEVRRNSGPGRREIGHGNLAERAIKKVLPTQTEFPYVIRLV 427 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDEDH 485 SEI ES+GSSSMA+VC +LALM GVPIS V+GIAMGL D F +LSDI+G EDH Sbjct: 428 SEILESNGSSSMASVCSGTLALMAGGVPISGAVSGIAMGLFSDEKGRFAVLSDIAGIEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 G MDFK+AGT GITA QMD+K+ G+ ++ A++QA+ GR HIL EM+K +S + Sbjct: 488 FGDMDFKLAGTKKGITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHILGEMNKAISSVKGN 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L E PR+ IP D+I +IG GGK+IR I+EQ+G+++++DD G V IAS S E Sbjct: 548 LSENAPRITQKQIPKDRIGELIGPGGKMIRAIIEQSGSEISVDDSGKVTIASPSEESKEK 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A MI I + EV KIY G + ++ DFGAFV ++GL HIS+L +RV D+V Sbjct: 608 AIAMIDGIFEEIEVGKIYDGVIKRIADFGAFVEILPGKEGLCHISKLDVKRVQSVRDIVS 667 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 EGD + VK++ D GKI LS K V Sbjct: 668 EGDKIKVKVISVDKMGKIDLSRKDV 692 >gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi WI91-23] gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi WI91-23] Length = 722 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 + ED++L AI H K + A + + K+ P+ + K F + ++E+ + D Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K YFSS + + NE F+D + ++VR+ +L+ Sbjct: 253 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663 I SI P+V +IY+G V K+ FGAF+ A++G + S+ + R ++ Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716 >gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae GPIC] gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae GPIC] Length = 694 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 299/687 (43%), Positives = 427/687 (62%), Gaps = 21/687 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ L ETG+IARQ++GAVLA ET V ++V +L++ DF PL V+YQE+ ++GK Sbjct: 13 GKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEPVDFLPLRVDYQEKFSSIGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++RE RPTE EIL SR+IDRS+RP + QV+ V +D + P +++ Sbjct: 72 TLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVWSYDGVTLPDPIAIC 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 SAAL +S +P V G +V ++N +V+NP + + D ++L ++GT++A+LM+E Sbjct: 132 GVSAALAISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMELVLAGTENAILMIEGH 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 + L+E+ V++AI FGH + AI L + K+ +S L EE+ Sbjct: 192 CDFLTEEQVIEAIEFGHKHIATICRAIKDLQQKVGKKK---NSDAIVPLPEEVQS----- 243 Query: 252 LRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 V+ F+ K+ +I + L+K++V F E+ + I + F+ ++ Sbjct: 244 -SVNTFVEGKFADLLKIKEKKAFEAASKQLEKEIVEKFLEENEIFTALNIKTAFKQAKSD 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++ ++ VR DGR T+R IS L RTHGS LF RG+TQ + V TLG+ Q Sbjct: 303 YMRALIREQSVRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQ 362 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 + L+G F + Y F P + GEV R+G+P RREIGHG+LA +A+ LP A+FPY Sbjct: 363 RYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPAKFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+RI S ITES+GSSSMA+VCG LALMDAGVPI P+AGIAMGL+ D D ILSDISG Sbjct: 423 TIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDNDHVTILSDISG 482 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED+LG MDFKVAG GITA QMD+K+ GI+ IM AL QAK GR HIL+ M + L+ Sbjct: 483 LEDYLGDMDFKVAGNTEGITAFQMDIKVEGITPTIMQAALAQAKAGRQHILDIMKEALAA 542 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 + L ++ PR+E M I P++I VIG GGK IR I+E+ G +++I+D G V I++SS Sbjct: 543 PKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASSPQ 602 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 IE A+ MI + EV KIY+G+V ++ FGAFV ++GL HIS+ S +R+ Sbjct: 603 AIEKAKSMIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISEFSKQRIENVG 662 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D VK+GD + VKLL +++G+ KLS K Sbjct: 663 DFVKQGDILAVKLLSINEKGQYKLSHK 689 >gi|322374185|ref|ZP_08048718.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150] gi|321276890|gb|EFX53962.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150] Length = 745 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 283/693 (40%), Positives = 432/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ +AGRPL +E G++A+Q++GAV+ YG+T VL+T V + + DFFPL VNY+ Sbjct: 4 QTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D++ LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSHLDLTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ + L+ Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLKA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + L + + EK R +K+++++ + + ++ + + + E Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDDDKDTILRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 TIAEPRPGLAPTAPKIDSIQIPVDKIKIVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+ A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ +R Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD V VK++ D++G++ S+K + Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695 >gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] Length = 701 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++ ED++++AI+ E K ++E I + K K + ++ K + EE+ Sbjct: 187 MIEAGAKEVPEDIMIEAIMTAQEEIKKIVEFIEGIVKEVGKPKM-----EYQKRIVPEEI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ K+ FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G++ I+ AL QAK RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTIIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL + Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDEK 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Slackia heliotrinireducens DSM 20476] gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Slackia heliotrinireducens DSM 20476] Length = 743 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 304/694 (43%), Positives = 427/694 (61%), Gaps = 24/694 (3%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 ++ E G+ ETG +A+Q+ GAVL GET VL T V KD DFFPLTV++ E Sbjct: 5 SLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEKD-YDFFPLTVDFME 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RE + ++ L +RMIDR IRP F+ +K E V+ D ++ Sbjct: 64 KMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P + + ASAALM+ PF+GP ++ + ++++NP +E + S L+L ++GT+ Sbjct: 124 PDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTIAGTR 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKL 240 D + MVE AN+++E+ +L A+ FG E ++ M A EP I D S Sbjct: 184 DYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPDASIA 243 Query: 241 E------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK--KMVSYFSSEHSSWNEGEIV 292 E +EMS +K+ +K R ++++LK K + E ++W +I Sbjct: 244 ERVDAHFDEMSAALKD--------ADKQSRIAKVEELKAAIKANDFSEEEQAAWGS-DIA 294 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + + ++ +R ++++ R DGR ++ +R + + G L R HGS LF RG TQA+ V Sbjct: 295 AALKSLEKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVC 354 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG + Q +D++ +M YNF P TGEV RMGAP RRE+GHG LA RAI PV Sbjct: 355 TLGLLNEAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPV 414 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP +FPY +R+VSEI ES+GSSSMA+ CGS LALMDAGVPI PV+GIAMGL+K+ D Sbjct: 415 LPSEDEFPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDG 474 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +ILSDI G ED LG MDFKV GT +GITA+QMD K G+S I+ ALQQAK GR HIL Sbjct: 475 VVILSDIQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHIL 534 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 N M + R +L + PR+E + IP D+IR VIG GG+ IRGI + TGA + I +DGT Sbjct: 535 NAMLAEIPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGT 594 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS AA+ + +I PEV ++Y+G VV + FGAFV ++DGL+HIS++ Sbjct: 595 VHIASVDQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRM 654 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685 + RV+K DV+ GDTV V++++ D + GK+ L Sbjct: 655 ANGRVSKVEDVLNMGDTVKVQVIEIDPKSGKVSL 688 >gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 702 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/680 (43%), Positives = 437/680 (64%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G L + G++A Q++G L G+T++L T V ++G DFFPL +YQE+ YAVGK Sbjct: 12 GSDLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE + ++ ILISR +DR +RPLF + + N+ QVI D ++ P ++ + Sbjct: 72 IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF GPV V Y++G++++NP DE + SLDL V+GT DA+ MVE Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSLDLTVAGTADAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN+LSED +L+A++ H E K + I + KE + + ++L+ ++ ED Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICGFIQTIIDDIGKEKMEVAEVVETELQRKIKDKYTED 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I+ +++K F E +E EI + I K VR ++ K Sbjct: 252 IKNSIRTTDKVQRENDINTIEEKCKEDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +SA+ GLL R HGS LF RG TQ + V+TLG+ +EQ +DS++ + Sbjct: 311 IRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 +H YNF P G++ + P RRE+GHG LA RA+ PVLP T FPYT+R+VSE+ Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTNDFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ + IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEENSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI++ ++ AL A + RL IL+ ++ + + R L ++ Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHKARLEILDVITSAIDKPREDLSKYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + I P+++R+VIG GGK I I++ TG K+ +DDG + +AS+ + A +MI Sbjct: 551 PRIFSIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASNDGESGKKAIQMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +SI P+ IY+G+V ++M+FGAFV ++GL+HISQ+ T+R K DV+K GD V Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690 >gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa NIES-843] gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa NIES-843] Length = 717 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL GET VL T ++ ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKA-REGVDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E IL R+IDR +RPLF +++ QV+ + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+G+PF+GP+ +V + ++++NP E G LDL V+G+ + V+M Sbjct: 127 LAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAGSPEGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242 +E ANQL E +++AI FG+ + +I A +L + +E ++ + L E Sbjct: 187 IEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPAVNETVQNFLRE 246 Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----SWNEGEIV-SVFE 296 + + IK+ L + + E+ + + I++ K+ ++ E + + E +++ ++F+ Sbjct: 247 QAKEEIKQILSQFTLSKTERDEKLEAIENRIKETITALPDEDTLKAPTLEEPKLIGNLFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 D+ K++R +++ VR+DGR + VR IS +VG+L +R HGS LF RG TQ + + TLG Sbjct: 307 DLTKKLMRAQIIEDGVRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQVLSIATLG 366 Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 T D Q + D L ++ HYNF P + GE M +P RREIGHG LA RAI PVLP Sbjct: 367 TPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAIVPVLP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPY LR+VSE+ S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+K+G++ Sbjct: 427 PQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEVR 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S ++ A++QA R HIL + Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLSMEVVAKAIEQALPARKHILEK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M L + R +L PR+ + I PD I VIG GGK ++GI EQTG K++IDDDGTV Sbjct: 547 MLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDIDDDGTVT 606 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I+S+ + E A+ +I ++T ++Y G+V +++ GAFV ++G++HISQL+ Sbjct: 607 ISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMIHISQLAE 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V VK+ + D +G++ L+ Sbjct: 667 GRVGKVEDEVAVGDEVLVKVREIDSKGRLNLT 698 >gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 710 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 280/694 (40%), Positives = 438/694 (63%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|306826612|ref|ZP_07459917.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431190|gb|EFM34194.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes ATCC 10782] Length = 710 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 280/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F str. Langeland] gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F str. Langeland] Length = 702 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 446/694 (64%), Gaps = 14/694 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+E AGR +K++ G+ S+ A+ +YG+TVV+ + ++G DFFPL+V+Y Sbjct: 2 IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER Y+VGKIPGG+++RE +P++ IL +R IDR +RPLF Y+N+ Q++ V+ + + Sbjct: 62 EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++++ +S AL LS +PF PV V ++G++++NP + + + + LDL V T+ Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE ++ E+ + +AI+FG ECK ++ EA++KL K K+ V+ D Sbjct: 182 ERIMMVEAGGQEIDEETMYNAILFGFEECKNIVAFQEEAVAKLGK--TKDEQVLYKAD-E 238 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++E+E+ + + ++ + +I +K R Q+D +K+K+ FS ++ +I V Sbjct: 239 EVEKEVKRFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSQKYEDKG-ADIKEVIYKT 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q ++VR ++L++ R DGR + VR I +VG+L RTHG+ LF RG TQ + V TLG Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D ++ + +M HYNF + GEV + P RREIGHG LA RA+ P++P + Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF---II 475 FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ DD + Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLIT-SDDLEREKV 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 ++DI G ED G MDFKVAGT+ GIT++Q D KI G+S + + AL+ AK+ RLHIL ++ Sbjct: 477 ITDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKI 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + E R +L ++ PR EI+ I P++IR+VIG GGKVI I+ T K+ I +DG + + Sbjct: 537 KECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFV 596 Query: 596 ASSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 S++ E ++ A +I +T +IY G+V K +FGAFV ++GLVHIS+L Sbjct: 597 TSNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDF 656 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+ D D++G+I LS K Sbjct: 657 ARVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690 >gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 717 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/705 (41%), Positives = 440/705 (62%), Gaps = 37/705 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S+++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AA+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 134 AAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251 +SE+V+L AI + K + + + K P+ + F + ++E+ +I + Sbjct: 194 VSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVF-EFKDELKNLIYSE 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I +K+K +FSS + + NE F+D + ++VR +L+ Sbjct: 253 LKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFEREIVRKSILE 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR S +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 NNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RRE+GHG LA+R++ +LP+ FPYT+R+VSEI Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREVGHGHLAQRSLEAMLPKKDDFPYTIRVVSEI 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M V+S SR + Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVISRSRDDISVN 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ A+ Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQKAKAK 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV------ 663 I SI P++ +IY G V K+ FGAF+ ++G +S + R + D+ Sbjct: 612 IESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGF--LSNRARSRDDRYGDMRHSRYG 669 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V VK+ D D GKI+L + Sbjct: 670 SGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 714 >gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH] gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH] Length = 727 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/705 (41%), Positives = 440/705 (62%), Gaps = 37/705 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S+++ DF PL+V Y E+ YA GKIPG Sbjct: 24 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIPG 83 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 84 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 143 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AA+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 144 AAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 203 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251 +SE+V+L AI + K + + + K P+ + F + ++E+ +I + Sbjct: 204 VSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVF-EFKDELKNLIYSE 262 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I +K+K +FSS + + NE F+D + ++VR +L+ Sbjct: 263 LKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFEREIVRKSILE 322 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR S +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT DEQ +D + G Sbjct: 323 NNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 382 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RRE+GHG LA+R++ +LP+ FPYT+R+VSEI Sbjct: 383 KRLNFMLHYNFPPFSVGETGRL-MTGRREVGHGHLAQRSLEAMLPKKDDFPYTIRVVSEI 441 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI G+EDHLG M Sbjct: 442 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDILGEEDHLGDM 501 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M V+S SR + Sbjct: 502 DFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVISRSRDDISVN 561 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ A+ Sbjct: 562 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQKAKAK 621 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV------ 663 I SI P++ +IY G V K+ FGAF+ ++G +S + R + D+ Sbjct: 622 IESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGF--LSNRARSRDDRYGDMRHSRYG 679 Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V VK+ D D GKI+L + Sbjct: 680 SGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 724 >gi|24378670|ref|NP_720625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus mutans UA159] gi|81452619|sp|Q8DWB2|PNP_STRMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24376532|gb|AAN57931.1|AE014867_3 polyribonucleotide nucleotidyltransferase [Streptococcus mutans UA159] Length = 730 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 283/665 (42%), Positives = 424/665 (63%), Gaps = 16/665 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+ L +E G++A+Q++GA L YG++ VL+ V + + G DFFPL +NY+E+ YA Sbjct: 10 FAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINYEEKRYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S + + Sbjct: 69 GKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++GQYV+NP +E + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244 A +LSED++L+A++ GH + +I E I+ + K A+ E + +D+ L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDAD----LQAEI 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQ 299 DL+ + I EK R + +K+ + + + ++ E + + + E ++ Sbjct: 245 VGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQME 304 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL D Sbjct: 305 HAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGD 364 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP F Sbjct: 365 TQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEAF 424 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDI 484 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + KV+ Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEKVI 544 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 RL+L P+++ + + D+I+ VIG GG+ I I+E+TG K++ID+DG + I SS Sbjct: 545 PAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIYSSD 604 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I +E+I S+ +V +IY+ +VV++ FGAFVH D LVHIS+++ R K Sbjct: 605 QEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVHLFDKTDALVHISEIAWTRTNK 664 Query: 660 TSDVV 664 DV+ Sbjct: 665 VEDVL 669 >gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 717 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL GET VL T ++ ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKA-REGVDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E IL R+IDR +RPLF +++ QV+ + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+G+PF+GP+ +V + ++++NP E G LDL V+G+ + V+M Sbjct: 127 LAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAGSPEGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242 +E ANQL E +++AI FG+ + +I A +L + +E V++ + L+E Sbjct: 187 IEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPVVNETVQNFLKE 246 Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----SWNEGEIV-SVFE 296 + + IK+ L + + E+ + + I++ K+ ++ E + E +++ ++F+ Sbjct: 247 QAKEEIKQILCQFTLSKTERDEKLEAIENRIKETITALPDEDPLKAPTLEEPKLIGNLFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 D+ K++R +++ VR+DGR + VR IS VG+L +R HGS LF RG TQ + + TLG Sbjct: 307 DLTKKLMRAQIIEDGVRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSIATLG 366 Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 T D Q + D L ++ HYNF P + GE M +P RREIGHG LA RAI PVLP Sbjct: 367 TPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAIVPVLP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPY LR+VSE+ S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+K+G++ Sbjct: 427 PQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEVR 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++ ++ A++QA R HIL + Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLTMEVVAKAIEQALPARKHILEK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M L + R +L PR+ + I PD I VIG GGK ++GI EQTG K++IDDDGTV Sbjct: 547 MLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDIDDDGTVT 606 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I+S+ + E A+ +I ++T ++Y G+V +++ GAFV ++G++HISQL+ Sbjct: 607 ISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMIHISQLAE 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V VK+ + D +G++ L+ Sbjct: 667 GRVGKVEDEVAVGDEVLVKVREIDSKGRLNLT 698 >gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] Length = 701 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 295/693 (42%), Positives = 440/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T + G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++ ED++L+AI+ E K ++E I + + K + ++ K + EE+ Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEEI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 NLEKEIVRKMVAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G++ I+ AL QA+ RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|94995150|ref|YP_603248.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS10750] gi|123080074|sp|Q1J4N2|PNP_STRPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94548658|gb|ABF38704.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS10750] Length = 710 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 280/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S V +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 701 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++ ED++L+AI+ E K ++E I + + K + ++ K + +E+ Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPDEI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G+++ I+ AL QA+ RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 701 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++G+ V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++ ED++L+AI+ E K ++E I + + K + ++ K + +E+ Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPDEI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G+++ I+ AL QA+ RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 KTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|167745605|ref|ZP_02417732.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662] gi|167654917|gb|EDR99046.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662] Length = 713 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 294/688 (42%), Positives = 435/688 (63%), Gaps = 11/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +E GR+A Q++GA YG+TVVL+T +DG DFFPL+V Y+E+ Y Sbjct: 25 MELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQY 84 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+L+RE+RP+EN IL R+IDR +RPLF K Y+N+ + VM D + SP + Sbjct: 85 AVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPEL 144 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP V I+G++++NP + + S + L V+ T++ V+M Sbjct: 145 TAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTREKVIM 204 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMS 245 +E AN++ ED++++AI H K +I I + C KE + + + E+ +S Sbjct: 205 IEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMYEDMVS 264 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVR 304 + E + + F EK VR + I ++ K+ ++ ++ GE V F Q K VR Sbjct: 265 FITPEAMEEAVFTDEKQVREENIRGIEDKLAERYADNEEWLSQIGEAVYTF---QKKTVR 321 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++L K R DGRD +R ++A+V L R HGS+LF RG TQ + V TLG+ + Q +D Sbjct: 322 KMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLD 381 Query: 365 SLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 + + + +M HYNF + GE P RREIGHG LA RA+ PVLP +FPY + Sbjct: 382 GMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEEFPYAI 441 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDISG 481 R VSEI ES+GS+S ++C SSL+LM AGVP+ PVAGI++GLV DD++IL+DI G Sbjct: 442 RTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLILTDIQG 501 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLS 540 ED G MDFKVAGTD GITA+QMD+KI G+++ I+ A+ + K R +IL++ M+ V+ Sbjct: 502 LEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMNPVIG 561 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E+R +G++ P++ I P++I VIG GK I I+++TG K++ID+ G V I S Sbjct: 562 EARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDILSEDQ 621 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+ A +I+SI + V IY+G+VV++M FGAFV +DGL+HIS+L+ +RV K Sbjct: 622 EMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKDRVEKV 681 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD V VK+L+ D G+I L ++ Sbjct: 682 EDVVNIGDRVAVKVLEIDKMGRINLKLE 709 >gi|298490374|ref|YP_003720551.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708] gi|298232292|gb|ADI63428.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708] Length = 718 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 305/694 (43%), Positives = 435/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++ ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSQA-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ QVI + D + P V Sbjct: 67 AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIAFTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E D G LDL V+G+ D V+M Sbjct: 127 LAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIDAGDLDLIVAGSPDGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A L K+ + P +D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQLDLVEELGLKIVQEAPPGVDQTLENYIHD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEH-----SSWNEGEIVSV 294 S IK+ L + F K R +D +K K + S E ++ N + + Sbjct: 247 CASAEIKKIL--AQFALTKTERDAALDVVKDGIKAEIEALSEEDPIRVAATANSKALGNT 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+DI ++R +L+ VR+DGR + VR +S QV +L +R HGS LF RG TQ + T Sbjct: 305 FKDITKYLMRRQILEDNVRVDGRKLDQVRPVSCQVNVLPKRVHGSGLFNRGLTQVLSCCT 364 Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT D Q + D L Q ++ HYNF P + GE M AP RREIGHG LA RAI PV Sbjct: 365 LGTPGDAQNLNDDLQVDQHKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERAILPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP QFPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+ Sbjct: 425 LPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S ++ A+ QAK RL+IL Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLEVIAQAVHQAKAARLNIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M + + RL+ F PR+ + I PD I VIG GGK I+GI E+TGAK++I+DDGT Sbjct: 545 DKMLQTIETPRLETSPFAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I++ + AR +++ +T +Y G+V +++ GAFV F ++G++HISQL Sbjct: 605 VTISAVDEGRAKRARNIVQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHISQL 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D V GD V VK+ + D++G+I L+ Sbjct: 665 ADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698 >gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton thalassium ATCC 35110] gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 729 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 313/720 (43%), Positives = 451/720 (62%), Gaps = 38/720 (5%) Query: 4 VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTV 61 V T EI+ G+ LK+ETG++A+Q+DG+ + + ET+VLATVV + Q+FFPL V Sbjct: 2 VFTKEIDLGQGKVLKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQV 61 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 Y+E+ A GK PGG+++RE RP++ EIL +R+IDR++RPLF Y ETQ+I+ V+ D Sbjct: 62 EYREKYSAAGKFPGGFIKREGRPSDKEILSARLIDRALRPLFPDGYYQETQIIVTVISSD 121 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + V+ +AAS ALM S +PFE P+ +V ING +++ P + E ++ +D+ + G Sbjct: 122 QLNDADVLGGIAASCALMASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDMDICIGG 181 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI--D 233 T D + M+E E +++SE ++ AI FGH+ + + EA +L ++ K EP +I D Sbjct: 182 TADTICMLEGEMSEISEAEMIGAIKFGHDVIRKICEAQRELREVVGKPKRVFEPTIIPDD 241 Query: 234 SKDF------SKLEEEMSQMIKEDLRV----------SCFIPEKYVRCKQIDDLKKKMVS 277 K ++L+E Q +K++ R S + KY ++ ++++ Sbjct: 242 MKAAIREVAEARLKELAYQPLKKEERADKTAEVYADASAAVLRKYKA-----EITDEILA 296 Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337 + NE I DI+ V+R ++L R+DGR + +R IS ++GL+ R HG Sbjct: 297 ENPEKAIYLNEKAINDYIHDIEKHVMREMILADAKRLDGRRLDEIRPISIELGLIPRAHG 356 Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 S+LF RG+TQA+V +TLGT++D Q D+L FM+HYNF P + GEV RMG+ SRR Sbjct: 357 SALFTRGETQALVTLTLGTKKDAQLTDTLFDDADKRFMLHYNFPPFSVGEVGRMGSVSRR 416 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 EIGHG LA RAI V+P FPYT+R+VS+I ES+GSSSMA+VCG +LA MD GVPI Sbjct: 417 EIGHGNLAERAIKKVVPAENAFPYTMRVVSDILESNGSSSMASVCGGTLAAMDGGVPIKS 476 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 PVAGIAMGL+K+G+ + +LSDI G+EDHLG MDFKVAGT GITA QMD+KI G+ I+ Sbjct: 477 PVAGIAMGLIKEGERYAVLSDILGNEDHLGDMDFKVAGTIDGITACQMDIKIDGLDYAIV 536 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL+QA++GR+HIL M + ++ R +L ++ PR+ + IP D I VIG GG+ IR + Sbjct: 537 EKALEQARQGRMHILKIMDEAITSPRQELAKYAPRLTTIQIPVDAIGAVIGKGGETIRAL 596 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAF 636 +T +++I DDGTV IAS S AA + I+ + PEV +Y G+V +V D GA Sbjct: 597 TSETNTEIDIADDGTVTIASVSSEGSAAAVDAIKLLVSDPEVGMVYNGKVKEVRDDLGAI 656 Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL----DFDD--RGKIKLSMKVV 690 V GL+HIS+LS +R K SD++K G VKL+ D D R + LSMKV+ Sbjct: 657 VEILPGVTGLLHISELSHQRGTKPSDILKVGQKTKVKLIRMAKDPKDPRRTRYSLSMKVL 716 >gi|317472798|ref|ZP_07932109.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp. 3_2_56FAA] gi|316899717|gb|EFV21720.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 695 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 295/693 (42%), Positives = 436/693 (62%), Gaps = 11/693 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V +E AGR L +E GR+A Q++GA YG+TVVL+T +DG DFFPL+V Y Sbjct: 2 VKKFSMELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+L+RE+RP+EN IL R+IDR +RPLF K Y+N+ + VM D + Sbjct: 62 EEKQYAVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 SP + +M+ ++ A +S +PF+GP V I+G++++NP + + S + L V+ T+ Sbjct: 122 CSPELTAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTR 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--L 240 + V+M+E AN++ ED++++AI H K +I I + C KE + + + Sbjct: 182 EKVIMIEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMY 241 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299 E+ +S + E + + F EK VR + I ++ K+ ++ ++ GE V F Q Sbjct: 242 EDMVSFITPEAMEEAVFTDEKQVREENIRGIEDKLAERYADNEEWLSQIGEAVYTF---Q 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L K R DGRD +R ++A+V L R HGS+LF RG TQ + V TLG+ + Sbjct: 299 KKTVRKMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSE 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D + + + +M HYNF + GE P RREIGHG LA RA+ PVLP + Sbjct: 359 AQRLDGMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSEI ES+GS+S ++C SSL+LM AGVP+ PVAGI++GLV DD++IL Sbjct: 419 FPYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLIL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGTD GITA+QMD+KI G+++ I+ A+ + K R +IL++ M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + V+ E+R +G++ P++ I P++I VIG GK I I+++TG K++ID+ G V I Sbjct: 539 NPVIGEARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S I+ A +I+SI + V IY+G+VV++M FGAFV +DGL+HIS+L+ + Sbjct: 599 LSEDQEMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKD 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD V VK+L+ D G+I L ++ Sbjct: 659 RVEKVEDVVNIGDRVAVKVLEIDKMGRINLKLE 691 >gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B str. Eklund 17B] gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 704 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 299/697 (42%), Positives = 444/697 (63%), Gaps = 27/697 (3%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 AG+ +K+E G+I S+ A +YG+TV+L V + G DFFPL+V Y+ER YAVG Sbjct: 10 AGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+E IL R +DR++RPLF K Y+N+ QV+ V+ + ++ P ++++ Sbjct: 70 KIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 AAS AL LS +PF PV QV I+ +++NP E ++ +L L V T++ V+M+E Sbjct: 130 NAASMALCLSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKERVMMIEA 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVI----EAISKLAK-------MCAKEPIVIDSKDFSK 239 N++ ED+++DAI FG +EC+ +I EA+SK K E + D K+F+ Sbjct: 190 GGNEIPEDIMIDAIKFGFDECQKIINFQEEAVSKFGKEKDVPTLFTVDEEVEKDIKEFA- 248 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 S MIKE + +I +K R ID + +K+ F ++ G+I V ++Q Sbjct: 249 -----SDMIKE----AMYITDKDERNAAIDAVNQKVKEEFGEKYEDKF-GDIKEVLYNMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 KVVR ++L K R DGR + VR + ++GLL RTHG+ LF RG TQ + V TLG D Sbjct: 299 KKVVRHMLLKDKRRPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVGD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + Q +M HYNF + GEV + P RREIGHG LA RA+ P++P +F Sbjct: 359 IQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+ D + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT GIT++Q+D K+ G S N++ A++ A++ R+ IL+++++ Sbjct: 479 DIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKINE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S R + + P+ E + I PD+IR+VIG GGKVI I++ TG K++I +DG+V ++S Sbjct: 539 CISSPREDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L ERV Sbjct: 599 SDHAGVKEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKERV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692 K DVV GD + VK+ + D +G+I LS K ++DQ Sbjct: 659 NKVEDVVSVGDEILVKVTEIDSQGRINLSRKDVLLDQ 695 >gi|251781688|ref|YP_002995990.1| polynucleotide phosphorylase/polyadenylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390317|dbj|BAH80776.1| polyribonucleotide nucleotidyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 714 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A+V L + HG LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEVDFLPKVHGLGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|19746859|ref|NP_607995.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS8232] gi|81632438|sp|Q8NZC6|PNP_STRP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|19749100|gb|AAL98494.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus pyogenes MGAS8232] Length = 710 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 436/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKSFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium beijerinckii NCIMB 8052] gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 701 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/697 (42%), Positives = 450/697 (64%), Gaps = 17/697 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M +V T EI AGR LK+E G++ S+ A +YG+TV+L V ++G DFFPL+ Sbjct: 1 MNNVLTTEI--AGRELKVEFGKVGMLSNAATFTSYGDTVILTNVNASEQPREGIDFFPLS 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+ER YAVGKIPGG+++RE RP+E IL R +DR++RPLF K Y+N+ QV+ V+ Sbjct: 59 VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + ++ P ++++ AAS AL LS +P+ P QV I+G++V NP + S L L V Sbjct: 119 EKDNLPEILAINAASLALCLSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREKSILHLTVC 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV--ID 233 T++ V+M+E ++ ED ++DAI +G +EC+ +I EA++K K EP++ +D Sbjct: 179 ATKERVMMIEAGGQEIPEDTMIDAIKYGFDECQKIIAFQEEAVAKFGKK-KDEPVLYAVD 237 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + ++E S MIKE + +I EK R +D + +K+ F +++ G+I Sbjct: 238 PELEKDVKEFASDMIKE----AMYIMEKDERNAAVDAVYEKVNEAFGEKYAD-KMGDIKE 292 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 V +Q KVVR ++L K R DGR + +R + ++G+L RTHG+ LF RG TQ + V T Sbjct: 293 VLYTMQKKVVRHMLLKDKRRPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVAT 352 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ + Q +D + Q +M HYNF + GEV + P RREIGHG LA RA+ P++ Sbjct: 353 LGSISEIQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLI 412 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-- 471 P +FPYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ D Sbjct: 413 PSEEEFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS 472 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G ED G MDFKVAGT GIT++Q+D K+ G S N++ A++ A++ RL I Sbjct: 473 EEAVLTDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLTI 532 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 ++++++ +S + + + P+ +IM+I PD+IR+VIG GGKVI I++ TG K++I +DG Sbjct: 533 IDKINECISTPKEDVSLYAPKTQIMSINPDKIRDVIGAGGKVINKIIQDTGVKIDIKEDG 592 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV ++S+ + A ++I +T + ++Y G+V K+ FGAFV +++GLVHIS+ Sbjct: 593 TVFVSSTDHNGVNEAIKIIEGLTKEVKAGEVYLGKVTKITTFGAFVEILPSKEGLVHISK 652 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 L+ ERV K DVV GD + VK+ + D++G+I LS K Sbjct: 653 LAKERVNKVEDVVSIGDEILVKVTEIDNQGRINLSRK 689 >gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] Length = 732 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 297/693 (42%), Positives = 442/693 (63%), Gaps = 20/693 (2%) Query: 11 WA--GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 W+ G+ + +E G IA+Q+ G+V+ Y +T +L+T KD DFFPLTV YQE+ Y Sbjct: 8 WSFFGKTITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKD-TDFFPLTVLYQEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP+E+ L +R+IDR IRPLF++ ++NE QV+ V+ +D ++S + Sbjct: 67 AAGKIPGGFLRREGRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEM 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187 S+ +S AL +S +PF GPV G QV +NG++++NP ++E+ +G L L V+GT+ A+ M Sbjct: 127 ASLFGSSLALCISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHLTVAGTKQAINM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEE 242 VE A ++SE+ +L A+ FGH + + E ++ CAKE + IDSK + ++E Sbjct: 187 VEAGAKEVSEETMLAALQFGHEAIQKLCEIQEEVIASCAKEKMEVTLYEIDSKIKAYIDE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV---SYFSSEHSSWNEGEIVSVFE--- 296 + ++ I+E + + K R ID L ++MV S ++ E + + E Sbjct: 247 KGAKRIREAVSIKA----KLERYATIDALIEEMVQGVSEWAYESEADQNKAMKQAREYGV 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+A VR ++ K+R DGR + +R + +QV LL R HGS+LF RG+TQ + V TLG Sbjct: 303 EIEANEVRRLISQDKIRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTTLGP 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D L + FM YNF P + GEV RMG+P RREIGHG L RA+ VLP Sbjct: 363 LSDAQMMDDLGMEEEKRFMHQYNFPPFSVGEVGRMGSPGRREIGHGALGERALAQVLPSE 422 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R +E+ ES+GSSS A++C +++LM AGVPI VAG+AMGL+ GD + +L Sbjct: 423 EEFPYAIRTSAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSVL 482 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+K+ GIS++I+ AL QA +GR+ IL+ M Sbjct: 483 TDIQGMEDHYGDMDFKVAGTREGITALQMDIKVTGISQDILREALAQAHKGRMQILDNME 542 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKI 595 ++E R + ++ P+++ + IP D+IR VIG GG++I I+E K++I+DDG+ I Sbjct: 543 ACIAEPRPDVSKWAPKMDRLIIPVDKIRIVIGKGGEMIDKIIESCQDVKIDIEDDGSCVI 602 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 I+ A+EMI ++ +V +IY+ V V + AFV+ G+ D L+H+SQLS E Sbjct: 603 YHMDREMIDKAKEMIENLIKEAKVGEIYEACVTDVRESFAFVNLFGSVDALLHVSQLSWE 662 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV D V+ GD + VK++ D+ GK+K+S K Sbjct: 663 RVENIKDKVRVGDHIRVKVIQVDETGKVKVSAK 695 >gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Cryptobacterium curtum DSM 15641] gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Cryptobacterium curtum DSM 15641] Length = 742 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 308/692 (44%), Positives = 436/692 (63%), Gaps = 25/692 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E G+ +LETG +A+Q+ GAVL T GET L T V + KD DFFPLTV++ E+ Sbjct: 7 EFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKD-YDFFPLTVDFMEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPGGYL+RE + ++ L +RMIDR IRP F +K E ++ D ++ P Sbjct: 66 YAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVADGQNPPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 + + ASAAL+ G PF+GP ++ + G++++NP E + S L+L ++GT D Sbjct: 126 CICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTIAGTADY 185 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--- 241 + MVE AN++SE+ +L A+ FG EAI A C + +D D + LE Sbjct: 186 ISMVEAGANEVSEEDMLAAMNFGQ-------EAI---AAFCDAQQRFLDQLDCTPLEYAI 235 Query: 242 -------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVS 293 E + ++ + +K R +++ LK + S FS E + +I + Sbjct: 236 HTADPRIAERVNAHEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAA 295 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++ + +R ++++ R+DGR ++ +R + + G L R HGS LF RG TQA+ V T Sbjct: 296 ALKALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCT 355 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT + Q +D++ ++ +M YNF P TGEV R+GAP RREIGHG LA RA+ PVL Sbjct: 356 LGTLREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVL 415 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPY +R+VSEI ES+GSSSMA+ CGS+LALMDAGVPI+ PV+GIAMGL+K+GD+ Sbjct: 416 PSEDDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDET 475 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +ILSDI G ED LG MDFKV GT GITA+QMD K G+S I+ AL QAK GR IL+ Sbjct: 476 VILSDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILS 535 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + +SE R +L EF PR+E + IP ++IR+VIG GGKVIRG+ ++TGA + +++DGTV Sbjct: 536 AMLEQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTV 595 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IA+ EAA++ I I PEV +IY G+VV + DFGAFV +DGL+HIS+++ Sbjct: 596 HIAAVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMA 655 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RV + DV+ GD V V++++ D GKI L Sbjct: 656 NGRVGQVEDVLNLGDAVKVEVIEVGDNGKISL 687 >gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae ATCC 13813] Length = 713 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ +AG+ L +ETG++A+Q++G+V+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 11 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 69 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ D +S Sbjct: 70 YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 129 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G +++NP E + S L+L V+GT++A+ Sbjct: 130 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 189 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSE+++L+A++ GH +I ++ KE ++ +L+ E+ Sbjct: 190 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 249 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300 L+ + + EK R + +K+ ++ + + EH ++ ++ + E ++ Sbjct: 250 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 309 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL + Sbjct: 310 AEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 369 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF + GE R GA RREIGHG L RA+ VLP +FP Sbjct: 370 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 429 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 430 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 489 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ Sbjct: 490 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 549 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 550 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 609 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I+ +++I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R A Sbjct: 610 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 669 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV++ G+ V VK++ DD+G++ SMK + Sbjct: 670 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 699 >gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 05ZYH33] gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84] gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7] gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis BM407] gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus suis 05ZYH33] gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84] gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis BM407] gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7] gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1] gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis JS14] Length = 739 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E +AG+ L +ETG++A+Q++GAV+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S Sbjct: 66 YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y+NG+ ++NP + + SL +L V+G +DA+ Sbjct: 126 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNKDAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE A +LSE+V+L+A++ GH + +++ +++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 +DL+ + + EK R + +++ +++ + +++ E ++ + E ++ Sbjct: 246 AAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILELMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A+V L HGS LF RG TQA+ V+TL + Sbjct: 306 TEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + F+ HYNF + G R GAP RREIGHG L RA+ VLP FP Sbjct: 366 QIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++ +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + Sbjct: 486 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID+DG V I S Sbjct: 546 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A IE +E+I + +V+++++ +VV++ FGAFV+ D LVH+S+++ RV K Sbjct: 606 AAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+V+ GD V VK++ DD+G+I SMK + Sbjct: 666 EDLVEVGDVVDVKVIKIDDKGRIDASMKAL 695 >gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens C str. JGS1495] gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens C str. JGS1495] Length = 702 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 IPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I ++ R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG+ + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae 2603V/R] gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 2603V/R] Length = 709 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/690 (40%), Positives = 439/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ +AG+ L +ETG++A+Q++G+V+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ D +S Sbjct: 66 YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G +++NP E + S L+L V+GT++A+ Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSE+++L+A++ GH +I ++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300 L+ + + EK R + +K+ ++ + + EH ++ ++ + E ++ Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF + GE R GA RREIGHG L RA+ VLP+ +FP Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPRLEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I+ +++I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R A Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV++ G+ V VK++ DD+G++ SMK + Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695 >gi|21911212|ref|NP_665480.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS315] gi|28896590|ref|NP_802940.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes SSI-1] gi|81758877|sp|Q8K5T4|PNP_STRP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21905424|gb|AAM80283.1| putative polynucleotide phosphorylase alpha chain [Streptococcus pyogenes MGAS315] gi|28811844|dbj|BAC64773.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus pyogenes SSI-1] Length = 710 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTATVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|77407938|ref|ZP_00784689.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae COH1] gi|77173485|gb|EAO76603.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae COH1] Length = 709 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ +AG+ L +ETG++A+Q++G+V+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ D +S Sbjct: 66 YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G +++NP E + S L+L V+GT++A+ Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSE+++L+A++ GH +I ++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300 L+ + + EK R + +K+ ++ + + EH ++ ++ + E ++ Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A + L + HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF + GE R GA RREIGHG L RA+ VLP +FP Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 ESR QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 ESRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I+ +++I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R A Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV++ G+ V VK++ DD+G++ SMK + Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695 >gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] Length = 701 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++ + V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++SED++L+AI+ E K ++E I + + K + ++ K + E++ Sbjct: 187 MIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEDI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A+VG+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 SLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G+++ I+ AL QA+ RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii L2-6] Length = 714 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 297/705 (42%), Positives = 431/705 (61%), Gaps = 36/705 (5%) Query: 2 FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 FD V E AGRP K+E G++ S+ + L YGET V+ VV ++G DFFPL Sbjct: 12 FDNFKVYETTLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E+ YA G+IPG ++RRE RP E IL SR++DR +RPLF K +N+ + + VM Sbjct: 72 VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + M+ AS +S +P+ GP+ G QV ++G+ VLNP ++ + S L L V+ Sbjct: 132 DPDCSPEIAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRKSDLALTVA 191 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T D ++M+E AN++ ED VL+AI H E K +I I+ + K I DF Sbjct: 192 ATMDKIVMIEAGANEVDEDTVLNAIKAAHVEIKKIITFINGIVAERGKPKI-----DF-- 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284 Q++ D+ V I EKY +DD K M + + E+ Sbjct: 245 ------QVVGLDMDVFHAIKEKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E ++ V +Q VVR +LD+ R+DGR +R ++A+VG+L R HGS +F RG Sbjct: 294 DLTEADLDLVSYKMQKYVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 TQ + TLG +D Q +D L+ Q ++ HYNF P + GE +P RREIGHG L Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPYT+R VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ Sbjct: 414 AERALLPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+ +GD ++ + DI G ED G MDFKV GT GITA+QMD+KI G++ +I+ A ++ Sbjct: 474 GLITEGDRWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKC 533 Query: 525 KRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 ++GRL+IL+E+ K V++E R +L + P++ M IP D+I++VIG GGKVI+ I Sbjct: 534 RKGRLYILDEIIKPVIAEPRRELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNC 593 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 K+++ +DG V +++ + + A IR+I + PE+ IYKG+V ++M+FGAFV + Sbjct: 594 KIDVQEDGHVFVSAVDQEDAKRAIFTIRTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGK 653 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +GLVHIS+L T+RV + DVV GD + VK+ D D +G+I LS + Sbjct: 654 EGLVHISKLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698 >gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens ATCC 13124] gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens B str. ATCC 3626] gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens ATCC 13124] gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens B str. ATCC 3626] Length = 702 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I ++ R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG+ + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAKF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens E str. JGS1987] gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens NCTC 8239] gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens E str. JGS1987] gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens NCTC 8239] Length = 702 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I ++ R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG+ + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|71904310|ref|YP_281113.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS6180] gi|94991237|ref|YP_599337.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS10270] gi|122986981|sp|Q1JEW6|PNP_STRPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123747743|sp|Q48RA2|PNP_STRPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71803405|gb|AAX72758.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS6180] gi|94544745|gb|ABF34793.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS10270] Length = 710 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ ++TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens str. 13] gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens CPE str. F4969] gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens str. 13] gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens CPE str. F4969] Length = 702 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I ++ R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG+ + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 98HAH33] gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus suis 98HAH33] Length = 791 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E +AG+ L +ETG++A+Q++GAV+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 59 ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 117 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S Sbjct: 118 YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 177 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y+NG+ ++NP + + SL +L V+G +DA+ Sbjct: 178 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNKDAIN 237 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE A +LSE+V+L+A++ GH + +++ +++ KE ++ +L+ E+ Sbjct: 238 MVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 297 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 +DL+ + + EK R + +++ +++ + +++ E ++ + E ++ Sbjct: 298 AAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILELMEH 357 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A+V L HGS LF RG TQA+ V+TL + Sbjct: 358 TEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 417 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + F+ HYNF + G R GAP RREIGHG L RA+ VLP FP Sbjct: 418 QIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 477 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++ +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 478 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 537 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + Sbjct: 538 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 597 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID+DG V I S Sbjct: 598 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 657 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A IE +E+I + +V+++++ +VV++ FGAFV+ D LVH+S+++ RV K Sbjct: 658 AAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 717 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+V+ GD V VK++ DD+G+I SMK + Sbjct: 718 EDLVEVGDVVDVKVIKIDDKGRIDASMKAL 747 >gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10] gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci RD1] gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10] gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] Length = 694 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 297/698 (42%), Positives = 431/698 (61%), Gaps = 22/698 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V +E G+ L ETG+IARQ++GAVLA ET V ++V +L++ DF PL V Sbjct: 3 FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEAVDFLPLRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ ++GK GG+++RE RPTE EIL SR+IDRS+RP + Q++ V +D Sbjct: 61 DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180 + P +++ SAAL +S +P V G +V ++N ++V+NP + + D ++L ++G Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T++A+LM+E + +E+ V++AI FGH + +A+ K KE ++ L Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEK---NTSQIVSL 237 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGE 290 EE+ V+ + K+V +I + L+ ++V E+ + E Sbjct: 238 PEEVQSA------VNALVEGKFVDLLKIKEKKAFEAASKQLENEVVEQLQEENEVFTEFN 291 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I F+ ++ +R+++ ++ +R DGR T+R IS + L RTHGS LF RG+TQ + Sbjct: 292 IKIAFKQAKSNFMRSLIREQGIRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMA 351 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TLG+ Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA +A+ Sbjct: 352 VCTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALS 411 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 LP +FPYT+RI S ITES+GSSSMA+VCG LALMDAGVPI P+AGIAMGL+ D Sbjct: 412 HTLPDPVKFPYTIRIESSITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDD 471 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D ILSDISG EDHLG MDFKVAG GITA QMD+K+ GI+ IM AL QAK GR Sbjct: 472 DHVTILSDISGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQD 531 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M + L+ + L ++ PR+E M I P++I VIG GGK IR I+E+ G +++I+D Sbjct: 532 ILETMKQALAAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDS 591 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V I++SS IE A+ +I + EV KIY+G+V V+ FGAFV ++GL HIS Sbjct: 592 GLVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHIS 651 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + S +R+ D VK+GDT+ VKLL +++G+ KLS K Sbjct: 652 EFSKQRIDNVGDFVKQGDTLTVKLLSINEKGQYKLSHK 689 >gi|322411051|gb|EFY01959.1| polynucleotide phosphorylase/polyadenylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 714 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/701 (40%), Positives = 436/701 (62%), Gaps = 10/701 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVISTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIIFQEQIVAAVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKSREAATEAVKE-MVKAEYEERYAEDENLAIIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ +IG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVIIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAINRTKEIIADLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 SDV++ G+ V VK++ D++G++ SMK + KP Sbjct: 662 TTNVSDVLEVGEEVDVKVIKIDEKGRVDASMKALIPRPPKP 702 >gi|312277503|gb|ADQ62160.1| Polyribonucleotide nucleotidyltransferase [Streptococcus thermophilus ND03] Length = 741 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/693 (40%), Positives = 432/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ + GRPL +E G++A+Q++GAV+ YG+T VL+ V + + DFFPL VNY+ Sbjct: 4 QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKIATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D++ LDL V+GT++ Sbjct: 123 SVPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ + L+ Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + + L + + EK R +K+++++ + + ++ E +V + E Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDDDKETILRDVVEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + IP D+I+ VIG GG+ I I+++TG ++ID++G V+I S Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIDETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+ A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ + Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD V VK++ D++G++ S+K + Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695 >gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor bescii DSM 6725] gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 701 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 293/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++E AGR L E G+ A ++GAVLA YG+T VL T ++G +FFPLTV+Y+ER Sbjct: 7 KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+++RE +P+E IL +R+IDR IRPLF K + ++ VI V+ D ++ P Sbjct: 67 YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++M+ +S AL +S +PFEGP V Y++ + V+NP E + S L L VSGT+D V+ Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSGTKDRVM 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244 M+E A ++SED++L+AI+ E K ++E I + + K + ++ K + E++ Sbjct: 187 MIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEDI 241 Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297 Q ++E + IP+K R K++D+LK+++ F E E + + +D Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296 Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR ++ ++ R DGR + +R + A++G+L RTHGS+LF RG TQ + V TLGT Sbjct: 297 SLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + Q++D L + +M HYNF P +TGE + P RREIGHG LA RA+ PV+P Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475 +FPYT+R+VSE+ S+GS+S A+VCGS+LALMDAGVPI PVAGI++GL+ KD FI+ Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED G MDFKVAGT GITA+Q+D+KI G+++ I+ AL QA+ RL IL+ M Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + R +L + P++ + P++IR++IG GGK+I I+ +T K++I+ DG + + Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A+ A MI I EV + + G+V + +GAFV ++GLVHISQL Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ +VVK GD V VK++ D G++ LS K Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689 >gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae A909] gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 18RS21] gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae CJB111] gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae A909] gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 18RS21] gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae CJB111] gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] Length = 709 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ +AG+ L +ETG++A+Q++G+V+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ D +S Sbjct: 66 YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G +++NP E + S L+L V+GT++A+ Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSE+++L+A++ GH +I ++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300 L+ + + EK R + +K+ ++ + + EH ++ ++ + E ++ Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + K+R DGR + +R + A++ L + HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF + GE R GA RREIGHG L RA+ VLP +FP Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I+ +++I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R A Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV++ G+ V VK++ DD+G++ SMK + Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695 >gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens D str. JGS1721] gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens D str. JGS1721] Length = 702 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I + R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITNRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG+ + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] Length = 718 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 293/695 (42%), Positives = 439/695 (63%), Gaps = 20/695 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNY 63 H +E GR L +ETG+ A+Q G+V YG+TVV+AT D+ ++ DF PLTV + Sbjct: 12 HRYSLEVGGRTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDKPIE--ADFLPLTVEF 69 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YAVGKIPG ++RRE RP E IL +R+ DR IRPLF K +++E QVI+ V+ D E Sbjct: 70 EERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQE 129 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQD 183 ++P ++ +AASAAL LS +P+ GP+ +V +G+ VLNP + ++ LDL V+G++D Sbjct: 130 NTPDILGPIAASAALTLSDIPWNGPIASVRVGLQDGRLVLNP-VAAEESDLDLVVAGSKD 188 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 A++MVE A ++ E+ ++ A+ F H +P+IE ++ K + + + KL +E Sbjct: 189 AIIMVEAGAREIPEEQLVQALEFAHRAMQPIIELQEQMRAELGKPKFEVAAPE--KLGDE 246 Query: 244 MSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGE------- 290 ++ ++ L K R ++ ++ +V+ +S S+ +E E Sbjct: 247 ETEAFRRLALERGLSNVLLTAAKGERSAALEAFRETIVAEVLASTDSALDEVEAQRRRRL 306 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 F+++ + +R ++L++ R DGR + VR I + +L R HGS++F RG+TQ + Sbjct: 307 YQQAFDEVVKRELRRLILEENRRADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLG 366 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 VVTLGT D Q VD L + F++HYNF P +TGEV R+ SRRE+GHG LA+RA+ Sbjct: 367 VVTLGTGRDAQLVDDLGLDTEDPFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALR 426 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 VLP +FPYT+R+V ++ ES+GSSSMAT C LALMDAGVPI KPVAG+AMGLV +G Sbjct: 427 AVLPSQEEFPYTIRVVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGVAMGLVSEG 486 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D ++L+DI G ED LG MDFKV GT G+TA+QMD+KI G+S + AL QA+ RL Sbjct: 487 DRHVVLTDILGLEDALGDMDFKVTGTKDGVTALQMDIKISGLSSETLRQALMQAREARLF 546 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL++M++VL E R +L PR+ + +P ++I +IG GGK +R + E+ G +V+I+ D Sbjct: 547 ILDKMTEVLPEPRRELKPQVPRILTLKVPVEKIGAIIGPGGKNVRAL-EELGVEVDIEQD 605 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 GTV++ S++ E AR I T + +IY+G V ++ +FGAFV DGL+HIS Sbjct: 606 GTVRLFSANAIAAEEARSRILGQTQEARIGEIYEGTVSRITNFGAFVTLFPGTDGLLHIS 665 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 Q++ RV + DV+K GD + VK+ D++G++ L Sbjct: 666 QIAPGRVERVEDVLKLGDKIRVKVNKIDEKGRVDL 700 >gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio cellulolyticus CD2] gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio cellulolyticus CD2] Length = 703 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 296/697 (42%), Positives = 439/697 (62%), Gaps = 21/697 (3%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 ++ +E AGR L +ETG++A+ S+G+V+ YG+TVVL+ ++G DFFPL+V+Y+ Sbjct: 3 NSFSMELAGRTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL SR+IDR +RPLF K +N+ ++ VM D ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 SP V +++ AS AL +S +PF GPV G + ++G+ V+NP + + S + + ++ T++ Sbjct: 123 SPEVAALLGASMALSISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQMYVTLAATRE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 ++M+E AN++ +DV+LDAI GH E + + + I + K K S +++ E Sbjct: 183 KIVMIEAGANEVPDDVMLDAIRQGHQEIRKICDFIDSVVKEIGKPKFEYKS---AEVPAE 239 Query: 244 MSQMIKE----DLRVSCFIPEKYVR----CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + +KE +R + +K VR K +D K + F S +E Sbjct: 240 IFMAVKEFGYARMREAVLAVDKQVRDENIAKLTEDTKAHLAETFPEMESIIDEA-----L 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++ KVVR ++ + R+DGR + +R +SA VGLL R HGS LF RG TQ + +VTLG Sbjct: 295 YKLEKKVVREYIMKEGKRVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLG 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 D Q +D + + +M HYNF + GE P RREIGHG LA RA+ PV+P Sbjct: 355 ALGDVQVLDGIELEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPS 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--- 472 +FPYT+R+VSE+ S+GS+S +VCGS+LALMDAGVPI KPVAGI+ GLV D D+ Sbjct: 415 QEEFPYTMRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDEDEPGR 474 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F+ DI G ED G MDFKVAGT GITA+Q+D+K+ G++E I+ A + ++GRL I+ Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDGITAIQVDIKVDGLTEEIVEQAFELTRKGRLQII 534 Query: 533 NE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 ++ + K + R ++ ++ P++ AI PD+IR+VIG GGK+I I+ TG K++I+DDG Sbjct: 535 DDVILKAIPAPRKEMSKYAPKIITTAINPDKIRDVIGPGGKMINKIIADTGVKIDIEDDG 594 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I+SS+ + A MI I E +IY G+V++V FGAFV F ++GLVHIS+ Sbjct: 595 KVFISSSNSQAAQRALMMIEGIAKDVEPGQIYMGKVMRVTTFGAFVEFLPGKEGLVHISK 654 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 L +RV K DVV GD + VK+LD D +G+I LS K Sbjct: 655 LDKKRVEKVEDVVNIGDEILVKVLDVDKQGRINLSRK 691 >gi|290579654|ref|YP_003484046.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans NN2025] gi|254996553|dbj|BAH87154.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans NN2025] Length = 730 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/665 (42%), Positives = 424/665 (63%), Gaps = 16/665 (2%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AG+ L +E G++A+Q++GA L YG++ VL+ V + + G DFFPL +NY+E+ YA Sbjct: 10 FAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINYEEKRYAA 68 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S + + Sbjct: 69 GKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189 M +S AL +S +PF GP+ G QV Y++GQYV+NP +E + SL +L V+GT++A+ MVE Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTKEAINMVE 188 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244 A +LSED++L+A++ GH + +I E I+ + K A+ E + +D+ L+ E+ Sbjct: 189 SGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDAD----LQAEI 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQ 299 DL+ + I EK R + +K+ + + + ++ E + + + E ++ Sbjct: 245 VGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQME 304 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL D Sbjct: 305 HAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGD 364 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP F Sbjct: 365 TQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEAF 424 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDI 484 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + KV+ Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEKVI 544 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 RL+L P+++ + + D+I+ VIG GG+ I I+E+TG K++ID+DG + I SS Sbjct: 545 PAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIYSSD 604 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I +E+I S+ +V +IY+ +VV++ FGAFV+ D L+HIS+++ R K Sbjct: 605 QEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVNLFDKTDALIHISEIAWTRTNK 664 Query: 660 TSDVV 664 DV+ Sbjct: 665 VEDVL 669 >gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis 89/1591] gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 05HAS68] gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3] gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis 89/1591] gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3] Length = 739 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/690 (40%), Positives = 436/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E +AG+ L +ETG++A+Q++GAV+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++S Sbjct: 66 YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y+NG+ ++NP + ++ LDL V+G +DA+ Sbjct: 126 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLDLTVAGNKDAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245 MVE A +LSED++L+A++ GH + +++ +++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEDIMLEALLKGHEAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 +DL+ + + EK R + +++ +++ + +++ E ++ + E ++ Sbjct: 246 AAYNDDLKKAVQVEEKLAREDATNAVRETVIAAYEEKYAEHEEFDRIMRDVHEILELMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A+V L HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L + F+ HYNF + G R GAP RREIGHG L RA+ VLP FP Sbjct: 366 QIIDGLGDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++ +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + Sbjct: 486 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID+DG V I S Sbjct: 546 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 IE +E+I + +V+++++ +VV++ FGAFV+ D LVH+S+++ RV K Sbjct: 606 DAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D+V+ GD V VK++ DD+G+I SMK + Sbjct: 666 EDLVEIGDIVDVKVIKIDDKGRIDASMKAL 695 >gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 722 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 297/689 (43%), Positives = 434/689 (62%), Gaps = 10/689 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H +E GR L +ETG+ A+Q G+V YG+TVV+AT + DF PLTV ++ Sbjct: 19 HRYAVEIGGRELVIETGKYAKQVSGSVWVRYGDTVVMATAQASPEPIEA-DFLPLTVEFE 77 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPG ++RRE RP E IL +R+ DR IRPLF K +++E QVI+ V+ D + Sbjct: 78 ERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQAN 137 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+ AASAALMLS +P+EGP+ +V I+GQ+VLNP L + + LDL V+G++D Sbjct: 138 PPDVLGPTAASAALMLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSDLDLVVAGSKD 197 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKL 240 A++MVE AN++ EDV+++A+ + H +P++ ++ K E ++ L Sbjct: 198 AIIMVEAGANEVPEDVLVEALEYAHQAIQPIVALQERMRAELGKPKFEWTPPETLPEEAL 257 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE---IVSVFED 297 E ++ + L K R + ++ + +++ F E E + + F++ Sbjct: 258 EALYARARERGLAEVLTTASKRERSEALERFAEALIAEFVPEEDEQAEAKRKLYAAGFDE 317 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + + +R ++L++ R DGR +RDI +V +L R HGS++F RG+TQ + VTLGT Sbjct: 318 VVKRELRRLVLEEGRRADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTG 377 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +D L + + F++HYNF P +TGEV R+ SRRE+GHG LA+RA+ PVLP Sbjct: 378 RDEQIIDDLGIDESDPFLVHYNFPPYSTGEVKRLRGTSRREVGHGNLAKRALRPVLPDKD 437 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIIL 476 FPYT+RIV ++ ES+GSSSMAT C LALMDAGVPI KPVAGIAMGLV + + +IL Sbjct: 438 AFPYTIRIVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGIAMGLVMPETGEPVIL 497 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED LG MDFKV GT G+TA+QMD+KI G++ IM AL+QA++ RL IL++M Sbjct: 498 TDILGMEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRRALEQARQARLAILDQME 557 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 VL R +L PR+ + +P D+I VIG GGK +R + E+ G V+I+ DGTV+I Sbjct: 558 AVLPAPRPELKPHAPRILTVKVPVDKIGVVIGPGGKNVRAL-EELGVDVDIEPDGTVRIY 616 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A E A+ + +T +V +IY+G V ++ +FGAF+ +GL+HISQ++ R Sbjct: 617 SADSAAAEEAKRRVEEVTREAKVGEIYEGTVTRITNFGAFITLFPGTEGLLHISQIAPGR 676 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + + D +K GD + VK+ D+ G+I L Sbjct: 677 IQRVEDHLKLGDKIKVKVNRIDEMGRIDL 705 >gi|139474436|ref|YP_001129152.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes str. Manfredo] gi|187611301|sp|A2RGH2|PNP_STRPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134272683|emb|CAM30954.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes str. Manfredo] Length = 710 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 277/693 (39%), Positives = 436/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S V +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-----YFSSEHSSWNEGEIVSVFED 297 ++ L+ + + EK R + +K+ + + Y E+ + ++ + E Sbjct: 243 DIVAKYNVQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYVEDENLATIMRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 363 GETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I S Sbjct: 543 TIAEPHPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIYS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S A I+ +E+I + +V ++Y +V+++ FGAFV+ D LVHIS+++ R Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTRT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 A SDV++ G+ V VK++ D++G++ SMK + Sbjct: 663 ANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 752 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 301/689 (43%), Positives = 441/689 (64%), Gaps = 11/689 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V++E GR L ETGR+A+Q++GAV A+YGET VL T V ++G DFFPL V+Y+ER Sbjct: 5 VQLELGGRVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYEER 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 Y+ GKIPGG+++RE RP+E IL RM+DRSIR LF + +N+ V+ V+ D + P Sbjct: 65 FYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPEHMRNDVHVVATVLSVDQHNPP 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 +V+++ AASAAL +S +P++GP+ ++ I+GQ ++NP + + +LDL V+G + Sbjct: 125 NVLAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAESTLDLLVAGHDGGI 184 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEM 244 MVE AN++SED+++DA+ H E + ++ I L A++ K+ + +++ + Sbjct: 185 TMVEAGANEVSEDLLVDAMELAHQEIRRIVAFIRDLQAQVGLKKVEIAPPARIDEIDAWI 244 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 +KE++ + I K R + + K+ V F H G + SV E+ K +R Sbjct: 245 EAELKEEIYKAVQIHHKVERKDALSAITKRAVERFEESHPGCA-GYVASVVEEWVKKGLR 303 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYV 363 ++LD+ R DGR + +R I+ +VG+L + HGS+LF RG+TQA+ V TLG ED+Q + Sbjct: 304 RLLLDEGRRADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQIL 363 Query: 364 DSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 D L F++HYNF P + GEV M P RREIGHG LA RA+ P+LP QFPY Sbjct: 364 DGLKIDEPAKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPMLPSEDQFPYV 423 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VS+I ES+GSSSMA+VCG SL++MDAGVPI K VAG+AMGLV DG IL+DI G Sbjct: 424 VRVVSDILESNGSSSMASVCGGSLSMMDAGVPIKKAVAGVAMGLVTDGSRVCILTDIQGL 483 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDH G MDFKVAGT G+TA+QMD K GGI+ I+ AL QA+ GR+ IL+ M + Sbjct: 484 EDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILKRALDQARDGRMRILDIMDGAIRSP 543 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R Q+ PR+ + I PD+IR+VIG GGK IR I+ QTGAKV++ DDG V +A+ + Sbjct: 544 RDQISPNAPRIMTITIDPDKIRDVIGPGGKTIRSIIAQTGAKVDVQDDGRVCVAAQTE-- 601 Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EAA + I+ I+D+ + +I+ G++ +++ FG FV ++GL+H+S++S+ + K Sbjct: 602 -EAASQAIKIISDLTREVQAGEIFVGRITRMLGFGYFVEVLPGKEGLLHVSEISSHHIPK 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D GD V V + + DD +I LS + Sbjct: 661 IEDAFSIGDEVLVVVREIDDMNRINLSRR 689 >gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] Length = 706 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 284/692 (41%), Positives = 437/692 (63%), Gaps = 5/692 (0%) Query: 1 MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + V EIE+ G+ + ETG++ S+ +VL +GETVVL V ++G DFFPL Sbjct: 1 MFENYKVYEIEYGGKKMTFETGKMCCLSNASVLVRWGETVVLVNVTASAKPREGIDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+++E+ YAVGKIPG +++RESRP++ IL SR++DR IRPLF K +N+ V++ VM Sbjct: 61 SVDFEEKLYAVGKIPGSFIKRESRPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D + P + MV S AL +S +P+ GP+ G V ++G+ +++P + S L+L V Sbjct: 121 VDPDCLPEIAGMVGTSFALSISDIPWNGPIAGINVGLVDGEIIVSPDAAQRAKSDLNLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + +D + M+E AN+++ DV+LDAII GH E K ++ I + K S + Sbjct: 181 AANEDVICMIEAGANEVANDVMLDAIIKGHEEIKRMVAFIKNVQAEIGKPKFSFQSMEVP 240 Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 +L + + +D++ + K VR +++ + +++ F E + N I Sbjct: 241 HELFDAIRDFAIDDVKAALDTDNKNVRDERLAPVVERIHEKFDDEEKT-NAAVIDEAIYK 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +Q +VR +LD++ R+DGR + +R ++A+VGLL R HGS +F RG TQ + V TLGT Sbjct: 300 LQKFIVRRWLLDEQKRVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTI 359 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D + ++ ++ HYNF + GE P RREIGHG LA RA+ PV+P Sbjct: 360 SEAQKLDGIDDQEQKRYIHHYNFPSYSVGETRPSRGPGRREIGHGALAERALEPVIPPVE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSE+ S+GS+S ++CGS+LALMDAGVPI +PVAGI+ GL+ +GD ++ + Sbjct: 420 EFPYTIRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKRPVAGISCGLITEGDRWMTMV 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT+ GITA+QMD+KI G++ +I+ A ++ + R++ILN+ M Sbjct: 480 DIQGLEDFFGDMDFKVGGTEKGITAIQMDLKIVGLTYDIIREAFEKTYKARMYILNDIML 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+ R +L ++ P+++ + I PD+IR VIG GGKVI+ I K++I+DDG V +A Sbjct: 540 PVIPAPREELSKYAPKMKSIKIHPDKIREVIGSGGKVIQKICADCNVKIDINDDGDVFVA 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + + A +I +I + PE+ IYKG+V ++M+FGAFV ++G+VHIS+L R Sbjct: 600 GTDSDGVRRALSIIETIVNDPEIGAIYKGRVTRLMNFGAFVELAPGKEGMVHISKLDMGR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K DVV GD V VK+ D D +G+I LS + Sbjct: 660 VEKVEDVVAVGDEVIVKVTDIDQQGRINLSRR 691 >gi|56808519|ref|ZP_00366256.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus pyogenes M49 591] gi|209560089|ref|YP_002286561.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes NZ131] gi|226704825|sp|B5XIK4|PNP_STRPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209541290|gb|ACI61866.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes NZ131] Length = 710 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 436/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGINYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|94989291|ref|YP_597392.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS9429] gi|122987076|sp|Q1JJX5|PNP_STRPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94542799|gb|ABF32848.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS9429] Length = 710 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 278/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ ++TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|15675748|ref|NP_269922.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes M1 GAS] gi|71911473|ref|YP_283023.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS5005] gi|81533345|sp|Q99XZ5|PNP_STRP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13622969|gb|AAK34643.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus pyogenes M1 GAS] gi|71854255|gb|AAZ52278.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS5005] Length = 710 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG+PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDVDLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ V+TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I+ +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens SM101] gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens SM101] Length = 702 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 291/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT E AGRP+K+E G++ SD A+L +YG+TV+L V ++G DFFPL+V Y+ Sbjct: 3 HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+VGKIPGG+++RE +P+E IL R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++++ AAS AL LS +PF PV QV I +++LNP E ++ SL L V T++ Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 V+M+E +++ ED +++AI FG ++C+ +I+ + M KE V + K+ EE Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239 Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 + + ++E + S I ++ R +D++K K+ F ++ N +I D+Q Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +VVR ++L + R DGR + VR+I +VGLL RTHG+ LF RG TQ + V TLG + Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISE 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA RA+ P++P A+F Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ KD + +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GIT++Q+D KI G+SE ++ A+ A++ RL IL+++ + Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R ++ ++ P+ + I P++IR+VIG GGKVI I+ TG K++I +DG V ++S Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + ++ A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L +RV Sbjct: 599 AESEGVKEAVKIIEGLTKEVKSGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D+V GD + VK+ + D +G+I LS K Sbjct: 659 EKVEDIVSVGDEILVKVTEIDSQGRINLSRK 689 >gi|116627040|ref|YP_819659.1| polynucleotide phosphorylase/polyadenylase [Streptococcus thermophilus LMD-9] gi|122268357|sp|Q03MV9|PNP_STRTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116100317|gb|ABJ65463.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus thermophilus LMD-9] Length = 741 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/693 (40%), Positives = 431/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ + GRPL +E G++A+Q++GAV+ YG+T VL+ V + + DFFPL VNY+ Sbjct: 4 QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D++ LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ + L+ Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVNADLKA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + + L + + EK R +K+++++ + + + E +V + E Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + G+ R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGKTGRYGAPGRREIGHGVLGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+ A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ + Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD V VK++ D++G++ S+K + Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695 >gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae NEM316] gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae NEM316] gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] Length = 709 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+ +AG+ L +ETG++A+Q++G+V+ YG++ VL V + + G DFFPL VNY+E+ Sbjct: 7 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ D +S Sbjct: 66 YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G +++NP E + S L+L V+GT++A+ Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSE+++L+A++ GH +I ++ KE ++ +L+ E+ Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300 L+ + + EK R + +K+ ++ + + EH ++ ++ + E ++ Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A + L + HGS LF RG TQA+ V+TL + Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D L+ + FM HYNF + GE R GA RREIGHG L RA+ VLP +FP Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++ Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 E R QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A I+ +++I S+ +V ++Y +VV++ FGAFV+ D LVHIS+++ R A Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DV++ G+ V VK++ DD+G++ SMK + Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695 >gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides ethenogenes 195] gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides ethenogenes 195] Length = 720 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 288/701 (41%), Positives = 450/701 (64%), Gaps = 6/701 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M ++ E GR L +E+G++AR +D AV Y +T +L T+ + ++G DF PLT Sbjct: 1 MITANSFERTIGGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++Y+ER YA GKIPGG++RRE RP+E IL R+ DR +RPL K ++NE Q+II V+ Sbjct: 61 IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ + +V AS L +S +P+EGPV ++V Y NG++VLNP + +Q +DL V Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVV 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238 T+ AV+M+E + ++ ED+++ AI F H + +I+ ++ KE + + + Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++ ++ +K + + +K +R ++ L+ ++V + ++ EG+I++ ++ Sbjct: 241 EVKAAVAAFVKGRVNEALSHQDKTLRENAVEALQSELVEALAE---TYAEGDILAAYDKE 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R+ +L+K +R++GR + +R + A+ G+L R HGS+LF RGDTQ + + TLG+ + Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQ 357 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D LS FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP + Sbjct: 358 EAQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477 FPYT+R+V+++ S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+ + D + ++ Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED+ G MDFKVAGT GITA+Q+DMK+ GIS +++ A+ QAK R IL M K Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDK 537 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 L++ + +L + PR+ ++I P +I +VIG GGK IR I+EQT V+I++DGTV I + Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A + A ++I +T E +Y G+V ++M FGAFV ++G+VHIS+L+ RV Sbjct: 598 TDEASAQKAIKIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 K DVVK GD + VK+ + D +G+I LS +V+ PI Sbjct: 658 EKVEDVVKVGDEITVKVTEIDSQGRINLSRRVILNPNAVPI 698 >gi|283781766|ref|YP_003372521.1| polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM 6068] gi|283440219|gb|ADB18661.1| Polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM 6068] Length = 744 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 295/702 (42%), Positives = 443/702 (63%), Gaps = 19/702 (2%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE + ETG +A+Q+ AVL YG+TVV+ + G DFFPLT +Y+ER Sbjct: 5 VEKQIGNHTFSFETGYLAKQAAAAVLCQYGDTVVMNAAASGPG-RPGIDFFPLTCDYRER 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 T A GK PGG+++RE RPT E L SR++DR IRPLF K +++E Q+ V+ D ++ Sbjct: 64 TAAAGKFPGGFIKREGRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQSIVLSSDKQNDG 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 V++M A AL +S LPF GP+ +V INGQ+V P D+ + S LDL VSG++ V Sbjct: 124 DVLAMNGAGCALFISALPFNGPIASVRVGRINGQFVAFPTHDDLETSDLDLIVSGSEREV 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDFSK 239 M+E A +L E+ + +AI+F HN VI I L + A KEP + D + Sbjct: 184 AMIEGFARELPENDMFEAILFAHN----VIRDICALQREFAAKIGVNKEPFPAPAPD--E 237 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIV-SVFE 296 L E + E+L+ + K+ R + + +K ++ F + ++ + + E++ +VF Sbjct: 238 LFERLKSRFFEELKTARQTVGKHARAEAVKAVKNAAIAEFIPDPTAPDAIKPEVLKTVFH 297 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ VR+++L +R DGRD+ T+R+I +V +L R HGS++F RG+TQA++ +TLGT Sbjct: 298 DLEELAVRSLIL-SGIRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGT 356 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ VD L FM+ YNF + GEV + P RREIGHG LA R+++PVLP Sbjct: 357 AKDEQRVDGLFDEYAKKFMLDYNFPSFSVGEVRPIRGPGRREIGHGALAERSVNPVLPAP 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFII 475 +FPYT+R++S+I ES+GSSSMA+VCG++L LM AGVPIS PVAGI++GLV++ + ++++ Sbjct: 417 EEFPYTIRVISDIMESNGSSSMASVCGATLGLMAAGVPISNPVAGISVGLVRESEQNWVL 476 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDH G MDFK+AGT +GIT +Q+D+K+ GIS +I+ +Q++ R+ IL +M Sbjct: 477 LTDIIGDEDHFGDMDFKIAGTQNGITGIQLDLKVEGISTDIIRATFEQSREARIQILRKM 536 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 V+ + ++ + PR+ I P++I +IG GGK+IRGI E TG + +DD G V I Sbjct: 537 LTVIPRPKDEISPWAPRLIRTQIDPEKIGMLIGPGGKMIRGIQEATGCVIEVDDSGVVTI 596 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 ASS+ EAA + ++T ++ KIY G++ + DFGAFV RDGLVHIS+LS Sbjct: 597 ASSNREWAEAALAQVEAVTATVQIGKIYNGRITSIKDFGAFVEIIPGRDGLVHISELSGG 656 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V+ ++V + GD + V ++D D+ ++KLS + + G P Sbjct: 657 FVSSVAEVCRVGDEMKVLVIDVDEHDRVKLSRRKAHEELGLP 698 >gi|55820183|ref|YP_138625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus thermophilus LMG 18311] gi|55822071|ref|YP_140512.1| polynucleotide phosphorylase/polyadenylase [Streptococcus thermophilus CNRZ1066] gi|81559948|sp|Q5M1W9|PNP_STRT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81561123|sp|Q5M6F9|PNP_STRT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|55736168|gb|AAV59810.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus LMG 18311] gi|55738056|gb|AAV61697.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus CNRZ1066] Length = 741 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 280/693 (40%), Positives = 430/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ + GRPL +E G++A+Q++GAV+ YG+T VL+ V + + +FFPL VNY+ Sbjct: 4 QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-NFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D++ LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ + L+ Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + + L + + EK R +K+++++ + + + E +V + E Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + K+R DGR + +R + A++ L HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I+ A+ +I + +V ++Y VV++ FGAFVH D LVHIS+L+ + Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK GD V VK++ D++G++ S+K + Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695 >gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum E58] gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum E58] Length = 693 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 291/683 (42%), Positives = 430/683 (62%), Gaps = 13/683 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR L ETG+IARQ+ G+V+ +T+V T V L + DF P V+YQE+ + GK Sbjct: 13 GRVLIFETGKIARQAGGSVVVRSQDTLVF-TSVCAADLSETSDFLPFRVDYQEKFSSTGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++RE RPTE EIL+SR+IDRS+RP + Q++ V +D ++ P +++ Sbjct: 72 TLGGFIKREGRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVWSYDGQTLPDPLAIC 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 A AAL LS +P V G ++ YI+GQ+++NP E D DL ++GT++A+LM+E Sbjct: 132 GAGAALALSNIPQNNIVSGVRIGYIDGQWIVNPTKTELDNSPFDLVLAGTENAILMIEGH 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMSQ 246 +E+ VL+AI +GH + + + + KE + + + F+ +E ++Q Sbjct: 192 CAFFTEEQVLEAIDYGHKHIITICKGLKDWQQRVGKEKNFDAVLPLPKEVFTAVENRIAQ 251 Query: 247 MIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + S F I K ++++++ + ++ I S F+ +++ +RT Sbjct: 252 PLP-----SLFDIEGKQALEAASQKMEEELIQELEKDDKIFSAFNIKSAFKALKSDSMRT 306 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++K+R D R T+R IS +V LL RTHGS LF RG+TQ + V TLG Q ++ Sbjct: 307 LIRERKIRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYEN 366 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L+G + F + Y+F P + GEV R+G+P RREIGHG+LA +A+ LP QFPYT+RI Sbjct: 367 LNGEGSSKFYLQYSFPPFSVGEVGRIGSPGRREIGHGKLAEKALAHALPDATQFPYTIRI 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 S ITES+GSSSMA+VCG LALMDAGVPI P+AGIAMGL+ D ++ IILSDISG EDH Sbjct: 427 ESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDAEEAIILSDISGLEDH 486 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAG GITA QMD+KI GI+ +IM AL QAK GR IL M + L+ + Sbjct: 487 LGDMDFKVAGNLEGITAFQMDIKIEGITLDIMKQALAQAKEGRQEILRIMHENLAAPKSD 546 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 L ++ PR+E M I P +I VIG GGK IR I+E+TG +++I+D GTV I++ S I Sbjct: 547 LSQYAPRIETMQIKPSKIATVIGPGGKQIRQIIEETGVQIDINDFGTVSISAVSSEAINK 606 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A+++I + EV K+Y+G++V ++ FGAF+ ++GL HIS+ S +R+ + SD+ K Sbjct: 607 AKKIIEGLVGEVEVGKVYRGRIVSIVPFGAFIEILPGKEGLCHISEFSKQRIEQVSDLFK 666 Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688 EGD + VKL+ +++G++KLS K Sbjct: 667 EGDMIDVKLISINEKGQLKLSHK 689 >gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 756 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 291/692 (42%), Positives = 444/692 (64%), Gaps = 16/692 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + G+ L+ TG++A+Q++GA+ A G+TVVL T + G DFFPL V+++E Sbjct: 4 TYSLTVGGQELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R Y+ GKIPGG+++RE RP++ IL +R+IDRSIR LF +++ V+ V+ D +++ Sbjct: 64 RYYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKNT 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P+++++ AASAAL +S +P+ GPV ++ Y+NGQ V+NP D+ + SLDL V+G D Sbjct: 124 PNILAINAASAALCISDIPWNGPVGAVRMGYVNGQLVVNPTEDQMPESSLDLTVAGHADG 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--E 242 + MVE A+++ E +++DA+ E + + + K+ +E I + ++ E E Sbjct: 184 ITMVEAGAHEVPEALLIDALGVAQEEIRKICQFQLKM-----REEIGLPKRELPHTEVIE 238 Query: 243 EMSQMIKEDLR----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + + + ++L+ V+ I +K R I L K V +F+ E+ + I V E Sbjct: 239 PIDKWVADNLQDEVAVAVMIHDKKERGAAISALVDKAVEHFAVEYPD-SAVYISGVVEGW 297 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR- 357 K +R + +KVR DGR ++ +R IS ++GLL R HGS+LF RG+T ++ TLG Sbjct: 298 VKKKMRYITAHQKVRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLG 357 Query: 358 EDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 ED+Q +D L + N F++HYNF P + GEV M P RREIGHG LA RA+ P++P Sbjct: 358 EDDQMMDGLKHNEPNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGALAERALAPIIPSE 417 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPY +R+VS+I ES+GSSS A++CG SLALM AGVP+ VAGIAMGL+K+GDD +IL Sbjct: 418 EDFPYVVRVVSDILESNGSSSQASICGGSLALMAAGVPVKCHVAGIAMGLIKEGDDVVIL 477 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT G+TA+QMD K GGI++ I+ AL QA++ R+ IL++M Sbjct: 478 TDIQGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITKEILTQALGQARKARMEILDKME 537 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++ + ++L ++ PR+ M I ++IR+VIG GGKVIR IV ++GAKVN++DDGT+ I+ Sbjct: 538 ACIA-APVELSQYAPRIFTMQIDVEKIRDVIGTGGKVIRNIVAESGAKVNVEDDGTIYIS 596 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ ++ A +MI I + + G+V ++M FGAFV ++GL+H+S++ST Sbjct: 597 STEPEAVKKAEKMITDIVRDVVAGEAFFGRVTRLMSFGAFVEVLPGKEGLLHVSEVSTRH 656 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + K V GD V V + + DD+ +I LS + Sbjct: 657 IDKIESVFAPGDQVMVMVKEIDDQNRINLSRR 688 >gi|50915014|ref|YP_060986.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS10394] gi|81371590|sp|Q5X9W0|PNP_STRP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|50904088|gb|AAT87803.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS10394] Length = 710 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 278/694 (40%), Positives = 433/694 (62%), Gaps = 10/694 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +AG PL +E G++A+Q++GA + YGE+ VL V + + G DFFPL VNY+ Sbjct: 4 QTFTTTFAGNPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QV V+ +D + Sbjct: 63 EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L+A++ GH + +I ++ + KE ++ + L+ Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296 ++ L+ + + EK R + +K+ MV E + +E ++ + E Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ VR ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ ++TL Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 SS A I +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDV++ G+ V VK++ D++G++ SMK + Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695 >gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium cellulolyticum H10] gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10] Length = 703 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/695 (41%), Positives = 439/695 (63%), Gaps = 11/695 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +ETG++A+ ++G+ L YG+TV++++ + +DG DFFPL+V+Y+ER Y Sbjct: 7 MELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLSVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE +P+E IL SR+IDR IRPLF K +N+ V+ VM + ++SP + Sbjct: 67 AVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVL 186 +M+ AS A+ +S +PF GP+ G + ++G+ ++NP +E + ++V+ GT++ + Sbjct: 127 AAMIGASVAISISDIPFNGPIGGVVLGLVDGEVIINPN-EEQRAKSKMYVTLAGTKEKIT 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 M+E A+ + +DV+ DAI GH E K + + I+ + K K +S D + L E + Sbjct: 186 MIEAGADIVPDDVMFDAIKKGHEEIKKICDFINGIVKEVGKAKFTYESADVPADLFEVVK 245 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + +R++ +K R ++ L ++ + + + E +I ++ KVVR Sbjct: 246 EFAYDKMRIAVLATDKQDRDAKVSQLTEETQAALAEQFPEM-ESKINDALYKLEKKVVRE 304 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L + R+DGR + +R +SA+VG+L RTHGS LF RG TQ + VTLG D Q +D Sbjct: 305 YILKEGKRIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMGDVQMLDG 364 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + + +M HYNF + GE P RREIGHG LA R++ PV+P +FPY R+ Sbjct: 365 IDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETEFPYAFRL 424 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILSDISGD 482 VSE+ S+GS+S +VCGS+LALMDAGVPI PVAGI+ GLV D D+F+ DI G Sbjct: 425 VSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFVTFMDIQGI 484 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541 ED G MDFKVAGT GITA+QMD+K+ G+S I+ A + + GRL I+N+ + K + + Sbjct: 485 EDFFGDMDFKVAGTTEGITAIQMDIKVDGLSYEIIRQAFELTRMGRLQIINDVILKAIPQ 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L E+ P++ I P++IR+VIG GGK+I I+ +TG K++I++DG V I + A Sbjct: 545 PRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRVYILTPDSA 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A ++I+ I E ++Y G+VV++ FGAFV +DGLVHIS+L +RV K Sbjct: 605 AAQKALKIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLDKKRVEKVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQNT 694 DVV GD + VK+ + D +G+I LS K + ++NT Sbjct: 665 DVVSIGDEILVKVTEIDKQGRINLSRKDAMAEENT 699 >gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1827-70] gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1827-70] Length = 595 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 279/572 (48%), Positives = 393/572 (68%), Gaps = 14/572 (2%) Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 +P +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ Sbjct: 9 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 68 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKD 236 AVLMVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 69 AVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------ 122 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + Sbjct: 123 NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 182 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I+ VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT Sbjct: 183 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 242 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P Sbjct: 243 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 302 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++L Sbjct: 303 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 362 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M Sbjct: 363 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 422 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++ R + EF PR+ + I PD+I++VIG GG VIR + E+TG + I+DDGTVKIA Sbjct: 423 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 482 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ + + A I IT EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +R Sbjct: 483 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 542 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K +D ++ G V VK+L+ D +G+I+LS+K Sbjct: 543 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 574 >gi|17231888|ref|NP_488436.1| polynucleotide phosphorylase/polyadenylase [Nostoc sp. PCC 7120] gi|81770047|sp|Q8YP11|PNP_ANASP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17133532|dbj|BAB76095.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7120] Length = 718 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 433/692 (62%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSPG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ QV+ M D + P V Sbjct: 67 AAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQVVALTMSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ V+M Sbjct: 127 LAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A +++L +E P +D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYIRD 246 Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296 S IK+ L + PE+ + D ++ E ++ N + + F+ Sbjct: 247 RASDEIKKILAQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALGNTFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 DI +R +++ VR+DGR + VR +S+QVG+L +R HGS LF RG TQ + TLG Sbjct: 307 DITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLG 366 Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 T D Q + D L Q ++ HYNF P + GE + AP RREIGHG LA RAI PVLP Sbjct: 367 TPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPVLP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 QFPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+ Sbjct: 427 PKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVR 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S ++ A+ QAK RLHIL++ Sbjct: 487 VLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLHILDK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + + R + + PR+ + I PD I VIG GGK I+GI E+TGAK++I+DDGTV Sbjct: 547 MLQTIDQPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I++ + + AR +++ +T +Y G+V +++ GAFV F ++G++HISQL+ Sbjct: 607 ISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLAD 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V VK+ + D++G+I L+ Sbjct: 667 YRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698 >gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus S26/3] gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus S26/3] Length = 694 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 295/698 (42%), Positives = 430/698 (61%), Gaps = 22/698 (3%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V +E G+ L ETG+IARQ++GAVLA ET V ++V +L++ DF PL V Sbjct: 3 FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEAVDFLPLRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ ++GK GG+++RE RPTE EIL SR+IDRS+RP + Q++ V +D Sbjct: 61 DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180 + P +++ SAAL +S +P V G +V ++N ++V+NP + + D ++L ++G Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 T++A+LM+E + +E+ V++AI FGH + +A+ K KE ++ L Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKHIGKEK---NTSGIVSL 237 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGE 290 EE+ V+ F+ K+V +I + L+ +++ E+ + Sbjct: 238 PEEVQSA------VNTFVEGKFVDLLKIKEKKAFEAASKQLENEVIEQLQEENEVFTAFN 291 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I F+ ++ +R ++ ++ +R DGR T+R IS L RTHGS LF RG+TQ + Sbjct: 292 IKIAFKQAKSNFIRGLIREQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMA 351 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TLG+ Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA +A+ Sbjct: 352 VCTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALS 411 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 LP +FPYT+RI S ITES+GSSSMA+VCG LALMDAGVPI P+AGIAMGL+ + Sbjct: 412 HTLPDPMKFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILED 471 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D ILSDISG EDHLG MDFKVAG GITA QMD+K+ GI+ +IM AL QAK GR Sbjct: 472 DHVTILSDISGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPDIMRAALAQAKEGRQD 531 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M + L+ + L ++ PR+E M I P++I VIG GGK IR I+E+ G +++I+D Sbjct: 532 ILETMKQALAAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDS 591 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V I++SS IE A+ +I + EV KIY+G+V V+ FGAFV ++GL HIS Sbjct: 592 GLVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHIS 651 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + S +R+ D VK+GDT+ VKLL +++G+ KLS K Sbjct: 652 EFSKQRIDNVGDFVKQGDTLTVKLLSINEKGQYKLSHK 689 >gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira hyodysenteriae WA1] gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira hyodysenteriae WA1] Length = 712 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 290/691 (41%), Positives = 442/691 (63%), Gaps = 11/691 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TV+ + G L LETG +A+Q+ G+V G T +LATVV + DFFPLTVNY E Sbjct: 3 TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I V+ D + Sbjct: 63 KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++++A+SAAL +S +PF GPV ++ Y NG+Y++NP+ E S LD+ V+G++DA Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 +LM+E EA ++SE+V + AI H E + I+ +++A +C + I ++ + + ++ Sbjct: 183 ILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKI---EQELFEFDADL 239 Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299 +M+ E + + + P+K R + +D+ ++ Y ++ ++ + I+ Sbjct: 240 VKMVTEYGRDKIESANYNPDKTKRNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR +++K +R DGR + +R I+ L+ R HGS+LF RG TQ + +VTLG+ +D Sbjct: 300 EEIVREAIVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + G + FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP +F Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++ VAGIAMGL D + IL+DI Sbjct: 420 PYTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT GITA Q+D+K+ GIS I+ AL+QAK+ R IL+++ + Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATI 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + + ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G V I + Sbjct: 540 ANAG-EISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ ++I S PEV ++Y G V + DFGAFV +GL HIS+L+ + V Sbjct: 599 TPTLDKTIKLINSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMN 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +V+K GD V VK+LD GK LS K + Sbjct: 659 VEEVLKIGDEVKVKILDVKG-GKYSLSRKAL 688 >gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] Length = 696 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 288/698 (41%), Positives = 429/698 (61%), Gaps = 24/698 (3%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D + GR L++E G++ +++G + YG+TVV T + DFFPL+V+ Sbjct: 5 DYRVFKTAIGGRLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVD 64 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 ++ER YA GKIPGG++RRE RP+E IL SR+IDR IRPLF K + N+ QV+ M D Sbjct: 65 FEERMYAAGKIPGGFIRREGRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDP 124 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181 + +P V+M+ +S AL +S +P++GP + YI+G YV+NP ++ S L L VSGT Sbjct: 125 DCTPESVAMIGSSIALTISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSELHLVVSGT 184 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 +DA++MVE AN++ E V+L+AI+F H + K ++ I + + K D +D+ L Sbjct: 185 KDAIMMVEAGANEVKESVMLEAILFAHEQIKQIVSFIEDIQREVGK-----DKRDYD-LY 238 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN---------EGEIV 292 E ++++ V+ F +K + +++ + E + E +I Sbjct: 239 EVPAEIVDA---VNDFAAQKMYDAVHVSGREERTAAMAQVETDTMEALSEKFEGVEKDIA 295 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + ++ + VR +++D ++R D R VR I +L R HGS LF RG+TQ + Sbjct: 296 NALYALKKEKVRNLIIDDEIRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAA 355 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLG D Q +D + +M HYNF P + GE + +P RREIGHG LA RA+ PV Sbjct: 356 TLGGIGDAQVIDGIGVETEKRYMHHYNFPPYSVGEARPIRSPGRREIGHGALAERALLPV 415 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK---- 468 LP FPYT+R+VS++ S+GS+S A+VCGS +ALMDAGVPI PVAGIAMGL++ Sbjct: 416 LPSKEDFPYTIRVVSDVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEE 475 Query: 469 DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 DG+ ILSDI G ED LG MDFKVAGT GITA+QMD+K+ G+S+ ++ AL+QA+ G Sbjct: 476 DGNSKMAILSDIQGLEDFLGDMDFKVAGTKEGITAIQMDIKVHGLSKEVLSQALEQAREG 535 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 RLHI+ EM + R +L ++ PR+ M I P+Q+R VIG GGK I I ++TGAK+++ Sbjct: 536 RLHIMGEMLDEIDAPRAELSKYAPRIITMKIDPEQVRVVIGPGGKTINKITQETGAKLDL 595 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDGTV I + + A ++ + +T EV ++Y+G+V ++M FGAF+ ++GL+ Sbjct: 596 EDDGTVFITAPDMESAHACQQAVELLTKDVEVGEVYEGEVKRIMAFGAFIEVLPGKEGLL 655 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 HIS+++ RV K DV+ GD V VK+ + DD+G+I L Sbjct: 656 HISKMADYRVDKVEDVMNLGDKVKVKVKEIDDQGRINL 693 >gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J2-064] Length = 658 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 284/635 (44%), Positives = 412/635 (64%), Gaps = 5/635 (0%) Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V D + SP Sbjct: 2 YSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPE 61 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+GT DA+ Sbjct: 62 MAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAIN 121 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245 MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ +LE E+ Sbjct: 122 MVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVK 181 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVFEDIQAKV 302 + ++ + EK R I+++K++++ SY + E + E GE+ + E I+ Sbjct: 182 AASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE 241 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL + Q Sbjct: 242 MRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQI 301 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D L + FM HYNF + GE AP RREIGHG L RA+ V+P +FPYT Sbjct: 302 IDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYT 361 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ ILSDI G Sbjct: 362 IRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGM 421 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL ++ +S Sbjct: 422 EDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAP 481 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV IAS A Sbjct: 482 REELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAM 541 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ ERV K D Sbjct: 542 NRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVED 601 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 ++K GD V VK+++ D +G++ LS K + + +P Sbjct: 602 ILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 636 >gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia intracellularis PHE/MN1-00] gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Lawsonia intracellularis PHE/MN1-00] Length = 736 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 293/690 (42%), Positives = 451/690 (65%), Gaps = 19/690 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + ETG +A Q++G++ G T+VL TV + L+ + FFPLTV Y E+ YA G+ Sbjct: 16 GKEIIFETGYMATQANGSLTVQCGGTIVLVTVC-SQPLESDKGFFPLTVEYSEKMYAAGR 74 Query: 73 IPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 IPG + RRE RP+E E LISR+IDR IRP+F K + Q++ NV+ D E+ ++++ Sbjct: 75 IPGSFFRREIGRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQENESDILAV 134 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 ASAA+MLS LPFE + ++ +NGQ+VLNP ++E + S L++ + + +AV+MVE Sbjct: 135 TGASAAVMLSSLPFECAIAAGRIGRLNGQFVLNPTINEIELSDLNIVFAASSEAVVMVEG 194 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI----VIDSKDFSKLEEEMSQ 246 EAN + E+++++A+ +GH E +P+I +K+ ++ + I V ++ FSK EE++ Sbjct: 195 EANVVEEEIIIEALEWGHKEIQPIITLQNKIQELAGRNKIPFVPVEENIVFSKKVEELAD 254 Query: 247 M--IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI----QA 300 I E ++V EK R + +K+K+++ + +I++ +I + Sbjct: 255 KFGIVEAMQVK----EKQFRKEARKAVKEKVLAILKEDPLYAEHSDILNTVSEIIGNLEK 310 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K+VR ++ + +R+DGRD+ TVR I+ +VGLL RTHGS+LF RG+TQ++ + TLG+ D Sbjct: 311 KIVRQRIVKENLRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLGSSTDN 370 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q VDSL+G +FM+HYNF P + GEV + SRREIGHG LA +A+ +LP FP Sbjct: 371 QRVDSLAGDTVKNFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKALKYILPSQNTFP 429 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 +T+RIV+E ES+GSSSMA +CG L+LMDAGVPIS PVAG+AMGL+K+ D FI+L+DI Sbjct: 430 FTVRIVAETLESNGSSSMAAICGGCLSLMDAGVPISAPVAGVAMGLIKEDDQFIVLTDII 489 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDED G MDFK+AGT GITA+QMD+KI G++ ++M A++QA+ R+HIL+EM+K L Sbjct: 490 GDEDAFGDMDFKIAGTTKGITAVQMDIKITGLTTDVMRKAMEQAREARIHILSEMAKALD 549 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R L ++ P+ + + PD IR +IG GGK I+ I TGA ++I+D G + I + + Sbjct: 550 VPRSNLSQYAPQHAELVVNPDAIRMIIGPGGKNIKQITTVTGAAIDINDSGKISIFAPTS 609 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E A++MI PE+ K YKG+V K+++ GA + + VHISQL+ E +A+ Sbjct: 610 EAMEQAKQMILYYDQRPELGKNYKGKVRKILEIGAILEIMPNVEAFVHISQLAVEHIAQV 669 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +DVV+ G+ + +K+++ +++ S K V Sbjct: 670 TDVVQLGEDMIIKVIEITG-DRVRASRKAV 698 >gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum E3 str. Alaska E43] gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3 str. Alaska E43] gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 704 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 294/691 (42%), Positives = 438/691 (63%), Gaps = 15/691 (2%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 AG+ +K+E G+I S+ A +YG+TV+L V + G DFFPL+V Y+ER YAVG Sbjct: 10 AGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+E IL R +DR++RPLF K Y+N+ QV+ V+ + ++ P ++++ Sbjct: 70 KIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 AAS AL LS +PF PV QV I+ +++NP E ++ +L L V T++ V+M+E Sbjct: 130 NAASMALCLSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKERVMMIEA 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMS 245 N++ ED+++ AI FG +EC+ +I + K KE +D + ++E S Sbjct: 190 GGNEIPEDIMIAAIKFGFDECQNIINFQEEAVKKFGKEKDIPTLFTVDEEVEKDIKEFAS 249 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 MIKE + +I +K R ID + +K+ F ++ G+I V ++Q KVVR Sbjct: 250 DMIKE----AMYITDKDERNAAIDAVNQKVKEEFGEKYED-KFGDIKEVLYNMQKKVVRH 304 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L K R DGR + VR + +VGLL RTHG+ LF RG TQ + V TLG D Q +D Sbjct: 305 MLLKDKRRPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDG 364 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + Q +M HYNF + GEV + P RREIGHG LA RA+ P++P +FPYT+R+ Sbjct: 365 IDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEFPYTIRL 424 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483 VSE+ S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+ D + +L+DI G E Sbjct: 425 VSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVLTDIQGIE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D G MDFKVAGT GIT++Q+D K+ G S N++ A++ A++ R+ IL ++++ +S R Sbjct: 485 DFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKINECISSPR 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 + + P+ E + I PD+IR+VIG GGKVI I++ TG K++I +DG+V ++SS + Sbjct: 545 EDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVSSSDHEGV 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A ++I +T + +IY G+V K+ FGAFV ++GLVHIS+L ERV K DV Sbjct: 605 KEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKERVNKVEDV 664 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692 V GD + VK+ + D +G+I LS K ++DQ Sbjct: 665 VSVGDEILVKVTEIDSQGRINLSRKDVLLDQ 695 >gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU 86-1044] gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU 86-1044] Length = 698 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 289/686 (42%), Positives = 437/686 (63%), Gaps = 17/686 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + ETG+IARQ++GAV+ GET++ + + DF PL V+YQE+ + GK G Sbjct: 15 ITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQEKFASAGKTLG 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RPTE E L+ R+IDR IRPLF + Y +TQ++ V +D +SP +++ AAS Sbjct: 75 GFIKREGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYDGVNSPDALAICAAS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL +S +P + V +V I+GQ++LNP ++ + S LDL ++GT+DAVLM+E Sbjct: 135 AALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVLDLMIAGTEDAVLMIEGYCKF 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE-------EEMSQM 247 L+E+ V++AI GH + + A+ + K K+ SKL+ + + ++ Sbjct: 195 LTEEQVIEAISIGHQGIQTICRALENWRQEVGK------PKNLSKLKPLAKEVIDAVEEL 248 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQAKVVR 304 +K+DL I +K R + D +KK++ E + E+ F+ + + +R Sbjct: 249 VKDDLNQVLQIVDKKEREEAFDQIKKRVNETLCPEGEEAPKFEALEVAKAFKKVSSGHMR 308 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ + R DGR + VR I + GLL RTHG SLF RG+TQ + + TLG Q + Sbjct: 309 RMIVKENKRSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYE 368 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L+G F + Y F P + GEV R+G P RRE+GHG+LA RA+ +LP +FPYT+R Sbjct: 369 DLNGEGSRSFYLQYFFPPFSVGEVGRVGPPGRREVGHGKLAERALASILPSKEEFPYTIR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + S ITES+GSSSMA+VCG LA+MDAGVPI++PV+GIAMGL+ + + + ILSDI G ED Sbjct: 429 LESNITESNGSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILEENHYTILSDILGIED 488 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 LG MDFKV G +GITA QMD+K+ GI+ +IM AL QAK GR+HIL +M + E + Sbjct: 489 ALGDMDFKVTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMFEACPEPKK 548 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 Q+ ++ PR+E++ + P +I +IG GGK IR I+E+TGA+++IDD+G V I+SS+L ++ Sbjct: 549 QMSKYAPRIEVLKVKPSKIGTIIGPGGKQIRAIIEETGAEIDIDDEGFVTISSSNLDGLQ 608 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+ +I +T E+ K+Y+G++ V+ FG FV ++GL HIS+ T+R ++VV Sbjct: 609 KAKRIIEDLTAEVEIGKVYEGKITSVVPFGIFVEILPGKEGLCHISEFDTQRTNDLNEVV 668 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VK++D ++RG++ LS KV+ Sbjct: 669 KVGDNVRVKVMDINERGQLVLSRKVL 694 >gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo] gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo] Length = 722 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 294/704 (41%), Positives = 438/704 (62%), Gaps = 33/704 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A + + KE + + + + +EE+ I DL Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELRDFIYADL 253 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + NE F+D + ++VR +L+ Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEKEIVRNSILND 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 314 KIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVSEIL 432 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT++GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M+ V+S SR+ + ++ Sbjct: 493 FKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVISNSRVGISKYA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 553 PKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEKI 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655 SI P+V +IY+G V K+ FGAF+ ++G + S + Sbjct: 613 ESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGHGNRYS 672 Query: 656 RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687 R D ++ EG + V+++D D GKI L + Sbjct: 673 RFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716 >gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii DSM 12563] gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii DSM 12563] Length = 716 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 288/691 (41%), Positives = 447/691 (64%), Gaps = 11/691 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TV+ + G L LETG +A+Q+ G+V G T +LATVV + DFFPLTVNY E Sbjct: 3 TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I V+ D + Sbjct: 63 KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++++A+SAAL +S +PF GPV ++ Y NG+Y++NP+ E S LD+ V+G++DA Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDIIVAGSKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243 +LM+E EA ++SE+V + AI H E + I+ +++A +C + I + ++ + L + Sbjct: 183 ILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEYDADLVKT 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQ 299 +++ + + + + P+K R + +D+ ++ Y + + ++ +++S + I+ Sbjct: 243 VTEYGRAKIEAANYNPDKTKRNESMDNAFNEIEEYIKT---TTDDEKLISQVKGICHTIE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR +++K +R DGR + +R IS + L+ R HGS+LF RG TQ + +VTLG+ +D Sbjct: 300 EEIVREAIVEKSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + G + FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP +F Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++ VAGIAMGL D + IL+DI Sbjct: 420 PYTVRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT GITA Q+D+K+ GIS I+ AL+QAK+ R IL+ + + Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDIIDSTI 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S + ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V+I D G V I + Sbjct: 540 SNAG-EISDFAPKYKTMEVNPEKIRVLIGPGGKNIKSIIEETGSDVDIQDSGIVNIFAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ ++I S PE+ ++Y G V + DFGAF+ +GL HIS+L+ + V Sbjct: 599 TPTLDKTIKLINSYVKDPEIGEVYDGVVKDIKDFGAFIEILPGVEGLCHISELAYKHVMN 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +V+K GD V VK++D GK LS + + Sbjct: 659 VEEVLKIGDEVKVKIIDIKG-GKYSLSRRAL 688 >gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli 95/1000] gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli 95/1000] Length = 712 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 287/691 (41%), Positives = 441/691 (63%), Gaps = 11/691 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 TV+ + G L LETG +A+Q+ G+V G T +LATVV + DFFPLTVNY E Sbjct: 3 TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I V+ D + Sbjct: 63 KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 ++++A+SAAL +S +PF GPV ++ Y NG+Y++NP+ E S LD+ V+G++DA Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 +LM+E EA ++SE+V + AI H E + I+ +++A +C + I ++ + + E+ Sbjct: 183 ILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKI---EQELFEYDAEL 239 Query: 245 SQMI----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299 +M+ +E + + + P+K R + +D+ ++ Y ++ ++ + I+ Sbjct: 240 VKMVTEYGREKIEAANYNPDKAKRNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIE 299 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR +++K +R DGR + +R IS L+ R HGS+LF RG TQ + +VTLG+ +D Sbjct: 300 EEIVREAIVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + G + FM+HYNF P + GEV R G+P RREIGHG LA R+ + VLP +F Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++ VAGIAMGL D + +L+DI Sbjct: 420 PYTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKVLTDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G EDHLG MDFKVAGT GITA Q+D+K+ GIS I+ AL+QAK+ R IL+++ + Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATI 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 S ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G + I + Sbjct: 540 SNPN-EISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPD 598 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ +I S PEV ++Y G V + +FGAF+ +GL HIS+L+ + V Sbjct: 599 TPTLDKTISLINSYVKDPEVGEVYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVMN 658 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +V+K GD V VK++D GK LS K + Sbjct: 659 VEEVLKIGDEVKVKIIDVKG-GKYSLSRKAL 688 >gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii PBr] gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii PBr] Length = 721 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 294/703 (41%), Positives = 441/703 (62%), Gaps = 32/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A K ++ KE + + + + +EE+ I DL Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKKFLEIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 254 KDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 314 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M V+S+SR+ + ++ Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV- 663 SI P+V +IY+G V K+ FGAF+ ++G + S+ + R + Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGTGNRYS 672 Query: 664 -------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEV 715 >gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium papyrosolvens DSM 2782] gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium papyrosolvens DSM 2782] Length = 706 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/691 (41%), Positives = 435/691 (62%), Gaps = 9/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T +E AGR L +ETG++A+ ++G+ L YG+TV++++ S +DG DFFPL+V+Y+ Sbjct: 6 KTFSMELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPLSVDYE 65 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE +P+E IL SR+IDR IRPLF K +N+ V+ VM + ++ Sbjct: 66 ERLYAVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDN 125 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQ 182 SP + +M+ AS A+ +S +PF GP+ G + ++G+ V+NP +E + ++V+ GT+ Sbjct: 126 SPEIAAMIGASVAISISDIPFNGPIGGVVLGLVDGEVVVNPN-EEQRAKSKMYVTLAGTK 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241 + + M+E A+ + +DV+LDAI GH K + + I+ + K K +S D + L Sbjct: 185 EKITMIEAGADIVDDDVMLDAIKKGHEVIKQICDFINGIVKEIGKPKFTYESADVPADLF 244 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + +R++ +K R ++ +L ++ + + ++ E +I ++ K Sbjct: 245 AAVKAFAYDKMRIAVLATDKQDRDAKVSELTEETQAALAEQYPEM-ENKIKDAIYKLEKK 303 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR +L + R+DGR + +R +SA+VG+L RTHGS LF RG TQ + +TLG D Q Sbjct: 304 VVREYILKEGKRVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAMGDVQ 363 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + +M HYNF + GE P RREIGHG LA R++ PV+P +FPY Sbjct: 364 KMDGIDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTEIEFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILSD 478 R+VSE+ S+GS+S +VCGS+LALMDAGVPI PVAGI+ GLV D D+F+ D Sbjct: 424 AFRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFVTFMD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537 I G ED G MDFKVAGT GITA+QMD+K+ G++ I+ A + K+GRL I+N+ + K Sbjct: 484 IQGIEDFFGDMDFKVAGTTEGITAIQMDIKVDGLNYEIIRQAFELTKKGRLQIINDVILK 543 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + + R +L E+ P++ I P++IR+VIG GGK+I I+ +TG K++I++DG V I + Sbjct: 544 AIPQPRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRVYILT 603 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 A + A +I+ I E ++Y G+VV++ FGAFV +DGLVHIS+L +RV Sbjct: 604 PDSAAAQKALRIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLDKKRV 663 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DVV GD + VK+ + D +G+I LS K Sbjct: 664 EKVEDVVNIGDEILVKVTEIDKQGRINLSRK 694 >gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai str. 56601] gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai str. 56601] gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 698 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 304/691 (43%), Positives = 432/691 (62%), Gaps = 10/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT+ ++ + LETG A+Q+ GAV+ G V+LATV K+GQDFFPLT Y Sbjct: 3 HTISGQYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEAKEGQDFFPLTCEYT 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y E Q+ + V+ D + Sbjct: 63 EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 S ++ AASAAL +S +PF GP+ GA++ +NG+ +LNP E S LDL V+GT+ Sbjct: 123 SVAGHALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTTKEILNSDLDLVVAGTKT 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 ++M+E EA +LS + ++ A+ F K + E ++ + K +V +EE Sbjct: 183 HIVMIEGEAKELSNEEMIAALRFAQ---KHIAEFVTLQEEYAKKIGVVKREVKLKVRDEE 239 Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDI 298 + +KE L + P+K R K+I ++ K++V +F S +I + ++ Sbjct: 240 LLSKVKEYAFAKLTTANQTPDKTARNKEISNVNKEVVEFFKDTIEDSDKIKDIKAYLHEL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR +L K R DGR + +R IS ++ L HGS++F RG TQ++ VVTLGT Sbjct: 300 EYEIVREQVLTKGTRFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGS 359 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q ++L G + FM+HYNF + GEV R P RREIGHG LA RA+ VLP+ + Sbjct: 360 DNQRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKPDE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILS 477 FPY +R+VSEI ES+GSSSMA+VC SLALM AGVPI V+GIAMGL D + +LS Sbjct: 420 FPYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIQGSVSGIAMGLFSDSSGKYAVLS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI+G EDH G MD K+AGT GITA QMD+K+ G+S +++ +QA+RGR HIL+ M K Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S++ L PR+ + IP D+I +IG GGK +RGI E TGA++ I+DDG V I+ Sbjct: 540 HISKASSTLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISG 599 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S+ E A +M+ EV KIY+G+V ++ DFGAFV ++GL HIS++ +RV Sbjct: 600 SNQESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRV 659 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 D+VKEGD + VK+L+ D GKI LS K Sbjct: 660 NSVKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690 >gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 703 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 293/703 (41%), Positives = 449/703 (63%), Gaps = 20/703 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ AG LK+ G++A Q++GA L YG+TVVL T ++G DFFPL+V+Y+E Sbjct: 4 TYTMDLAGSQLKVTIGKVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVGKIPGG+++RE RP+E L +R+IDR +RPLF + Y+N+ ++ V+ D + S Sbjct: 64 KMYAVGKIPGGFIKREGRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHS 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +V+M+ +S AL +S +PF+GP +V YI+G+Y++NP ++ S ++L ++GT+ A Sbjct: 124 PEIVAMIGSSIALSISDIPFDGPTGSVEVGYIDGKYIINPNEEQRNNSRINLSLAGTKTA 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242 ++MVE A ++SE +L+AI+ GH K + + + ++AK K D ++ K +E Sbjct: 184 IMMVEAGAQEVSEAEMLEAILEGHEVIKEICDFVDEIAKEIGK-----DKAEYEVFKADE 238 Query: 243 EMSQMIKE---DLRVSCFI-PEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVF 295 E+ +KE DL V+ +K VR + K+ + +F EH+ +I S Sbjct: 239 EIVAKVKEFGQDLLVNAIREKDKVVREANTEKAKEAIKEHFEDLIEEHAK----DISSAI 294 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 ++I+ +R +++++ R D R +R +S++VG+L RTHGS LF RG TQ + + TLG Sbjct: 295 DEIEVNEIRRGIIEEERRPDDRKLTEIRHLSSEVGVLPRTHGSGLFTRGQTQVLSIATLG 354 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 +EQ +D L + ++ HYNF G+ +P RREIGHG LA RA+ PV+P Sbjct: 355 AISEEQVIDGLGDDKPKRYIHHYNFPGFCVGDTKPSRSPGRREIGHGALAERALIPVIPD 414 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 + +FPYT+R+VSE+ S+GSSS A++CGS+LALMDAGVPI PVAGIAMGL+++ I Sbjct: 415 SEEFPYTIRVVSEVLSSNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIEEDGVIKI 474 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDH G MDFKVAGT GITA+QMD+K+ GI + I+ AL++AK R IL+ + Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTRKGITAIQMDIKVEGIKKEILETALERAKDARFEILDHI 534 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + + R +L ++ P + ++ I P++I VIG GGK+I I+EQTG K++IDDDG + I Sbjct: 535 ATTIEKPREELSKYAPIIHMITIDPERIGEVIGAGGKIINKIIEQTGVKIDIDDDGKISI 594 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S + + + A +I I EV ++Y G+V K++ FGAFV +GL+HIS+++ E Sbjct: 595 LSDNDEKAKEAIAIIEDIVKEIEVGEVYLGKVKKIVKFGAFVELKKGTEGLLHISEIAHE 654 Query: 656 RVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697 R DV+K GD++ VK++D D GKI LS K + + P Sbjct: 655 RTNNVEDVLKVGDSIEVKVIDIAKDTGKISLSRKALIEREDNP 697 >gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] Length = 708 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 289/684 (42%), Positives = 448/684 (65%), Gaps = 6/684 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + +ETG A+Q++GAV+ GET V V + DF PLTV Y+E+TYA GK Sbjct: 17 GKEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAYGK 76 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE +P+ EIL+SR+IDR IRPLF K + N+ + + D ++ P V+++ Sbjct: 77 IPGGFVKREGKPSNREILVSRLIDRPIRPLFPKGFHNDVIITAMTLSADDKNDPDVLAIT 136 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 SAALM+S PFEGP+ G +V ++G+++ NP +E D+ +D+ V+GT+DA++MVE Sbjct: 137 GVSAALMISEAPFEGPIAGVRVARVDGKFIANPTYEERDKSDMDIVVAGTKDAIVMVEGG 196 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKE 250 + ++ E+ +L+AI+F H K +I+ +L K KE IV++ + KL+E++ + ++ Sbjct: 197 SEEVPEEEILEAIMFAHEHIKQLIDFQIELQKKVGKEKIVVEKDEIEEKLKEDLEKY-RD 255 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 ++ + I +K R K ID + +K V + +I+ +++ ++++R + Sbjct: 256 EIFEAFKIQDKKERNKTIDSIFEKAVEEIEIPEDILVKAKII--YKEFVSQLMREKVFKD 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQYVDSLSGT 369 K R+DGR + +R I +VG+L R HGS+LF RG TQA+ VVTLG E++ G Sbjct: 314 KTRIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEESIEEGE 373 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 ++ FM+HYNF P + GE APSRREIGHG LA RA+ P++P FPY +R+VSEI Sbjct: 374 EKKRFMLHYNFPPFSVGEARPPRAPSRREIGHGALAERALEPLIPSEEDFPYVIRVVSEI 433 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GS+SMATVC SL+L DAGVP+ K VAGIAMGL+K+ D++IIL+DI GDEDHLG M Sbjct: 434 LESNGSTSMATVCAGSLSLFDAGVPMQKHVAGIAMGLLKEEDEYIILTDILGDEDHLGDM 493 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT G+TA+QMD+KI G+++ I+ ALQQA++ R HIL+ M + + + R ++ ++ Sbjct: 494 DFKVAGTRDGVTAIQMDIKIKGLTKEILEKALQQARKARFHILDLMYEAIPQPRPEVSKY 553 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P V + + PD+I +IG GK I+ I+++TG K++I+ DG VKI + + + A +M Sbjct: 554 APSVVKIRVLPDKIPLIIGPSGKNIKKIIDETGVKIDIEPDGLVKIYAVNKEAADKAVKM 613 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I + E I+ G+V +V D+GAFV R L+H+SQ++ ER+ D + GD Sbjct: 614 IDELVMDIEKGDIFLGKVTRVEDYGAFVELMPGRLSLLHVSQITGERLRSAKDKISVGDI 673 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693 + VK++D D++G++K+S+K V ++ Sbjct: 674 LKVKVIDIDEQGRVKVSLKDVKES 697 >gi|75909486|ref|YP_323782.1| polynucleotide phosphorylase/polyadenylase [Anabaena variabilis ATCC 29413] gi|123608898|sp|Q3M7Z9|PNP_ANAVT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|75703211|gb|ABA22887.1| 3' exoribonuclease [Anabaena variabilis ATCC 29413] Length = 718 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 295/692 (42%), Positives = 432/692 (62%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSAG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ Q++ M D + P V Sbjct: 67 AAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTMSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ V+M Sbjct: 127 LAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A +++L +E P +D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYIRD 246 Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296 S IK+ L + PE+ + D ++ E ++ N + + F+ Sbjct: 247 RASDEIKKILAQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALGNTFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 DI +R +++ VR+DGR + VR +S+QVG+L +R HGS LF RG TQ + TLG Sbjct: 307 DITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLG 366 Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 T D Q + D L Q ++ HYNF P + GE + AP RREIGHG LA RAI PVLP Sbjct: 367 TPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPVLP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 QFPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+ Sbjct: 427 PKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVR 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S ++ A+ QAK RLHIL++ Sbjct: 487 VLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLHILDK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + + R + + PR+ + I PD I VIG GGK I+GI E+TGAK++I+DDGTV Sbjct: 547 MLQTIDTPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I++ + + AR +++ +T +Y G+V +++ GAFV F ++G++HISQL+ Sbjct: 607 ISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLAD 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V VK+ + D++G+I L+ Sbjct: 667 YRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698 >gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia valaisiana VS116] gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia valaisiana VS116] Length = 722 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 293/705 (41%), Positives = 441/705 (62%), Gaps = 35/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFSGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251 +SED++L AI H K + A + ++ K+ P+ + K + +EE+ + D Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLEIVGKKEKLPLAFEEKI-FEFKEELRDFVYSD 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEPLFNRAFDDFEKEIVRNSILN 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 K+R DGR +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEI 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++N+M AL+QA+ GR+HIL+ M V+S+SR+ + ++ Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKNLMRDALEQARVGRIHILSIMDAVISDSRVGISKY 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E Sbjct: 552 APKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEK 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------------- 655 I SI P++ ++Y+G V K+ FGAF+ ++G + S + Sbjct: 612 IESIVREPKIGEVYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGNSNRY 671 Query: 656 -RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687 R D ++ EG V V+++D D GKI L + Sbjct: 672 SRFGGGGDNIRGNAGLVRPSKLEEGQRVKVRIIDIDKFGKIDLEI 716 >gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum 70/3] Length = 705 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 432/693 (62%), Gaps = 6/693 (0%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + T + +AGR L +ETG++ ++G+ YGETVV+ V ++G DFFPL Sbjct: 1 MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+Y+E+ YAVGKIPGGYL+RE RP+E IL SR++DR +RPLF K +N+ +++ V+ Sbjct: 61 AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D E+ P +++M+ AS A+ +S +P+ GP+ G V ++G+ VL P ++ S L L V Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSDLQLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237 + ++ V+M+E AN++ +D +L AI+ GH E K +I I ++ K S + Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240 Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L E + E ++ + +K VR +++ +K + + F ++ I Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +Q +VR +LD++ R+DGR + +R ++A+VGLL R HGS LF RG TQ + + TLG Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D + + +M HYNF + GE P RREIGHG LA+RA+ PV+P Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VSE+ S+GS+S A++CGS+L+LMDAGVPI PVAGI+ GL+ +GD ++ + Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A + + R +IL+E M Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 K + E R + ++ P++ +P D+IR VIG GGKVI+ + K++ID++G V I Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 L + + MI++IT PEV IYKG+VV++M+FGAFV +DG+VHIS+L Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+L+ D++GKI+LS K Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692 >gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae 91E135] gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae 91E135] Length = 727 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 297/709 (41%), Positives = 437/709 (61%), Gaps = 45/709 (6%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S ++ DF PL+V Y E+ YA GKIPG Sbjct: 24 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIPG 83 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 84 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 143 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AA+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 144 AAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 203 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDFSKLEEEMSQM 247 +SE+V+L AI ++ I+ I L K K P+ + + F + + E+ Sbjct: 204 VSEEVLLAAI----DQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EFKAELKDF 258 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRT 305 I +L+ +CF+ K R K I +K+K +FSS + NE +D + ++VR Sbjct: 259 IYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDFEQEIVRR 318 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ +R DGR+ +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT DEQ +D Sbjct: 319 SILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDD 378 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G +R +FM+HYNF P + GE R+ RREIGHG LA+R++ +LP+ FPYT+R+ Sbjct: 379 IDGDKRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRV 437 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEI ES+GSSSMATVC S++LM AGVP+ + VAGIAMGLV +GD ++ILSDI G+EDH Sbjct: 438 VSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSDILGEEDH 497 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT +GIT QMD+KI +++ +M AL QA+ GR+HIL+ M V+S SR Sbjct: 498 LGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSVISRSRDD 557 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ Sbjct: 558 ISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQK 617 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-- 663 A+ I SI P++ +IY+G V K+ FGAF+ ++G +S R + D+ Sbjct: 618 AKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGF--LSNRPKSRDDRYGDMRH 675 Query: 664 -------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V V++ D D GKI+L + Sbjct: 676 SRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 724 >gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] Length = 709 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 293/691 (42%), Positives = 440/691 (63%), Gaps = 11/691 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T+E AGR LK++ G++ S+ A+L +YGETVVL ++G DFFPL++ Y+ Sbjct: 3 QTLETTVAGRTLKIDFGKVGMLSNCALLVSYGETVVLINANASEKPREGVDFFPLSIEYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE +P+E IL +R IDR +RPLF K Y+N+ QV+ V+ + ++ Sbjct: 63 ERLYAVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 +P ++++ AS AL LS +PF P+ V ++ ++V+NP L++ + +L+L V T++ Sbjct: 123 APDILAINGASIALSLSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKSTLNLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSK 239 V+MVE +++ EDV+ DAI+FG ECK ++ EA+ KL K EP + + Sbjct: 183 RVMMVEAGGSEIPEDVMYDAIMFGFEECKKIVAFQEEAMEKLGKQKV-EPKLYKVDE--G 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 LE+E+ E ++ + +I +K R ID +K+K+ F ++ N +I V +Q Sbjct: 240 LEKEVRDFSFEMIKEAMYIMDKDERNAAIDSVKEKINDEFGEKYPD-NGADIAEVVYKLQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++VR ++L++ R DGR E +R IS +VGLL RTHG+ LF RG TQ + V TLG D Sbjct: 299 KEIVRNMLLNENRRPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGD 358 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + +M HYNF + GEV + P RREIGHG LA +A+ P++P F Sbjct: 359 VQILDGIGSEEFKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAEKALEPLIPNEDNF 418 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PYT+R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ +D +L+ Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKEKVLT 478 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED G MDFKVAGT+ GITA+Q D KI G+S + + L +A++ RL IL +++ Sbjct: 479 DIQGIEDFFGDMDFKVAGTEVGITAIQFDTKIHGLSNDCIKETLDKARKARLFILEKIND 538 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +S R +L ++ P+ M+I PD+IR+VIG GGKVI I+ +TG K++I +DG + + Sbjct: 539 CISGPREELSKYAPKTYTMSIDPDKIRDVIGPGGKVINKIIAETGVKIDIKEDGKIFVMC 598 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A ++I +T + +IY G+V K +FGAFV ++GLVHIS+L RV Sbjct: 599 DDSTCAKRALKIIDDLTREVKSGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARV 658 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D+V GD + VK+ D D++G+I LS K Sbjct: 659 NKVEDIVSVGDEILVKVTDIDNQGRINLSRK 689 >gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii Far04] gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii Far04] Length = 721 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 32/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHNSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A + ++ KE + + + + +EE+ I DL Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLEIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 254 KDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RD+ A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 314 KIRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M V+S+SR+ + ++ Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV- 663 SI P+V +IY+G V K+ FGAF+ ++G + S+ + R + Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGTGNRYS 672 Query: 664 -------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + VK++D D GKI L + Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEV 715 >gi|94993180|ref|YP_601279.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes MGAS2096] gi|123382250|sp|Q1J9S6|PNP_STRPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94546688|gb|ABF36735.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes MGAS2096] Length = 701 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/686 (40%), Positives = 431/686 (62%), Gaps = 10/686 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G PL +E G++A+Q++GA + YG++ VL V + + G DFFPL VNY+E+ YA GK Sbjct: 3 GNPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAAGK 61 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+++RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S + +M Sbjct: 62 FPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAAMF 121 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVELE 191 +S AL +S +PF GP+ G QV YI+G++++NP ++ + SL +L V+G+++A+ MVE Sbjct: 122 GSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKEAINMVESG 181 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMIKE 250 A +LSED++L+A++ GH + +I ++ + KE ++ + L+ ++ Sbjct: 182 AKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQADIVAKYNA 241 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFEDIQAKVVR 304 L+ + + EK R + +K+ MV E + +E ++ + E ++ VR Sbjct: 242 QLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILEQMEHAEVR 300 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ + K+R DGR + +R + A V L + HGS LF RG TQA+ ++TL + Q +D Sbjct: 301 RLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIID 360 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L+ + F+ HYNF + GE R GA RREIGHG L RA+ VLP +FPY +R Sbjct: 361 GLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFPYAIR 420 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+DI G ED Sbjct: 421 LVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLED 480 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 H G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + ++E R Sbjct: 481 HFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEATIAEPRP 540 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L P+++ + I D+I+ VIG GG+ I I+ +TG K++IDD+G V I SS A I Sbjct: 541 ELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIYSSDQAAIN 600 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 +E+I + +V ++Y +VV++ FGAFV+ D LVHIS+++ R SDV+ Sbjct: 601 RTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTTNVSDVL 660 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 + G+ V VK++ D++G++ SMK + Sbjct: 661 EVGEDVDVKVIKIDEKGRVDASMKAL 686 >gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 717 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 297/709 (41%), Positives = 437/709 (61%), Gaps = 45/709 (6%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S ++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AA+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 134 AAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDFSKLEEEMSQM 247 +SE+V+L AI ++ I+ I L K K P+ + + F + + E+ Sbjct: 194 VSEEVLLAAI----DQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EFKAELKDF 248 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRT 305 I +L+ +CF+ K R K I +K+K +FSS + NE +D + ++VR Sbjct: 249 IYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDFEQEIVRR 308 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +L+ +R DGR+ +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT DEQ +D Sbjct: 309 SILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDD 368 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G +R +FM+HYNF P + GE R+ RREIGHG LA+R++ +LP+ FPYT+R+ Sbjct: 369 IDGDKRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRV 427 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 VSEI ES+GSSSMATVC S++LM AGVP+ + VAGIAMGLV +GD ++ILSDI G+EDH Sbjct: 428 VSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSDILGEEDH 487 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKVAGT +GIT QMD+KI +++ +M AL QA+ GR+HIL+ M V+S SR Sbjct: 488 LGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSVISRSRDD 547 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605 + P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ Sbjct: 548 ISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQK 607 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-- 663 A+ I SI P++ +IY+G V K+ FGAF+ ++G +S R + D+ Sbjct: 608 AKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGF--LSNRPKSRDDRYGDMRH 665 Query: 664 -------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V V++ D D GKI+L + Sbjct: 666 SRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 714 >gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 7425] gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425] Length = 715 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 294/694 (42%), Positives = 432/694 (62%), Gaps = 18/694 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +I + GR + + GR A Q+ G V+ G+T VL T + ++G DF PL V+Y+ER Sbjct: 7 KISFDGRDIHITIGRFAPQAGGTVMIRSGDTAVLVTATR-AAAREGIDFLPLLVDYEERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG+LRRE RP E LISR+IDR +RPLF +++ QV+ + D + P Sbjct: 66 YAAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPPD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V+++ AS A++L+ +PF GP+ +V + +++NP E + G LDL V+G+ V+ Sbjct: 126 VLAVTGASVAVLLAQIPFNGPMAAVRVGLVGDDFIINPTYSEIEAGDLDLVVAGSPAGVV 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLE 241 MVE ANQL E V++AI FG+ + +I A +L + ++P D + + Sbjct: 186 MVEAGANQLPEQDVIEAIDFGYEAVRDLIRAQQELLTELGIALVQQDPPPRDPTLENFIR 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293 E +KE L + F +K VR +D++K + ++ + + + Sbjct: 246 ERAEAPVKEIL--ARFEKDKNVRDAALDEVKAAIEQAIKELEETDPVRVAAALDAKALSN 303 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 F+++ ++R +++ VR+DGR + VR IS VG+L +R HGS+LF RG TQ + V Sbjct: 304 TFKEVTKTLMRRQVIEGNVRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSAV 363 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L + ++ HYNF P + GE M +P RREIGHG LA RA+ PV Sbjct: 364 TLGTPGDAQELDDLHPDESKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERALVPV 423 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP QFPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+GD+ Sbjct: 424 LPPQDQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGDE 483 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S ++ A+QQAK R+HIL Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLQVVAEAIQQAKPARMHIL 543 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M + LS+ R + F PR+ + I P+ I VIG GGK ++GI E+TGAK++I+D G Sbjct: 544 EKMLETLSQPRQETSPFAPRLVNLKIDPELIGLVIGPGGKTVKGITEETGAKIDIEDSGM 603 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + I++S + + AR +I +T +Y G+V +++ GAFV F ++G++HISQL Sbjct: 604 ITISASDEDKAKRARSIIMGMTRKLSAGDVYVGKVTRIIPIGAFVEFLPGKEGMIHISQL 663 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D V GD V VK+ + D RG+I L+ Sbjct: 664 ADYRVNKVEDEVSVGDEVIVKVREIDGRGRINLT 697 >gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii A14S] gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii A14S] Length = 724 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/706 (41%), Positives = 441/706 (62%), Gaps = 35/706 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG IA+Q++G+VLATYG + VLATV + ++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A + + KE + + + + +EE+ + DL Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDVVGEKEKLPLAFEEKIFEFKEELRDFVYADL 253 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDTNESLFHKAFDDFEKEIVRNSILND 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 314 KIRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT++GIT QMD+KI +++++M AL+QA+ GR+HIL+ M+ ++S SR+ + ++ Sbjct: 493 FKVAGTENGITGFQMDIKIENVTKHLMRDALEQARIGRIHILSIMNSIISNSRVGISKYA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 553 PKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEKI 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSD-- 662 SI P+V +IY+G V K+ FGAF+ ++G + S+ + R S+ Sbjct: 613 ESIVREPKVGEIYEGVVKKINSFGAFIELTPTKEGFLSTRLRSRDSKYGSGRFGNNSNRY 672 Query: 663 ---------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG + V+++D D GKI L + Sbjct: 673 SRFGGAGGDNIRGNTGLIRPPKLEEGQQIKVRIVDIDKFGKIDLEI 718 >gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702] gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702] Length = 705 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 432/693 (62%), Gaps = 6/693 (0%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + T + +AGR L +ETG++ ++G+ YGETVV+ V ++G DFFPL Sbjct: 1 MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+Y+E+ YAVGKIPGGYL+RE RP+E IL SR++DR +RPLF K +N+ +++ V+ Sbjct: 61 AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D E+ P +++M+ AS A+ +S +P+ GP+ G V ++G+ VL P ++ S L L V Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSDLQLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237 + ++ V+M+E AN++ +D +L AI+ GH E K +I I ++ K S + Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240 Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L E + E ++ + +K VR +++ +K + + F ++ I Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +Q +VR +LD++ R+DGR + +R ++A+VGLL R HGS LF RG TQ + + TLG Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D + + +M HYNF + GE P RREIGHG LA+RA+ PV+P Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VSE+ S+GS+S A++CGS+L+LMDAGVPI PVAGI+ GL+ +GD ++ + Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A + + R +IL+E M Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 K + E R + ++ P++ +P D+IR VIG GGKVI+ + K++ID++G V I Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 L + + MI++IT PEV IYKG+VV++M+FGAFV +DG+VHIS+L Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+L+ D++GKI+LS K Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692 >gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 721 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 293/703 (41%), Positives = 440/703 (62%), Gaps = 32/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A + + KE + + + + +EE+ I DL Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 314 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M V+S+SR+ + ++ Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655 SI P+V +IY+G V K+ FGAF+ ++G + S + Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGTGNRYP 672 Query: 656 RVAKTSDV-----------VKEGDTVWVKLLDFDDRGKIKLSM 687 R ++ ++EG + VK++D D GKI L + Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQQIKVKIIDIDKFGKIDLEV 715 >gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium narugense DSM 14796] gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium narugense DSM 14796] Length = 721 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 296/709 (41%), Positives = 449/709 (63%), Gaps = 22/709 (3%) Query: 1 MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 M +VH++ E A G + +ETG +A+Q++G+V G+T+V + + + DF PL Sbjct: 1 MNEVHSITKEVAEGIVINIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V++ E+ YA GK PGG+ +RE RP+E IL SR+IDRSIRPLF K +N+ + + Sbjct: 61 VVDFDEKMYAAGKFPGGFFKREGRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D + V+S++A+SAAL +S +PF+GPV +V I+ +++LNP +D+ ++ +D+ + Sbjct: 121 IDNDFPVDVLSIIASSAALCISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDIDIVI 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 G +D +LM+E N++ ED +++ I N P I I + K +V +K Sbjct: 181 VGKEDNILMIEGSFNEIPEDKIIEII----NYALPAITKICDIQKELIS--LVKPTKSLV 234 Query: 239 KLEEEMSQMIKE-DLRVSCFIPEKY-VRCKQ-IDDLKKKM--------VSYFSSEHSSWN 287 L+E + D ++ I +K+ ++ KQ ++L+K++ F SE N Sbjct: 235 YLQEPTEDITSSLDSILTDNITDKFPLKTKQDFENLEKELKDEILSVLSDRFGSEFVEAN 294 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 I F++ K++R ++ K R+DGR + +R IS QVGLL R HGS+LF RG TQ Sbjct: 295 ILLINQAFQNKLKKIIRNYVIKNKKRVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQ 354 Query: 348 AIVVVTLGTREDEQYVDSL---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 A+ + TLGT+ED Q +D+L S R +M HYNF + GE P RREIGHG L Sbjct: 355 ALSIATLGTQEDSQIIDTLYQSSNEIRKRYMHHYNFPGFSVGEARPSRGPGRREIGHGAL 414 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A +A+ PVLP+ + FPYT+R+VSEI ES+GSSSMA+ CGSSL+LMDAGVPISK V GIAM Sbjct: 415 AEKALLPVLPKESDFPYTIRVVSEILESNGSSSMASACGSSLSLMDAGVPISKHVGGIAM 474 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+ + ++ IILSDI+G ED +G MDFKV GT G++A+Q+D+K+ GI + + A+++A Sbjct: 475 GLIYENEEIIILSDITGLEDAIGDMDFKVTGTIDGVSALQLDVKVPGIPIDALSKAIKKA 534 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 GR I+ +M++ +S R L + PR+E++ I P++I +VIG GGK+I+ I+E+TG+K Sbjct: 535 YEGRKSIIEKMNQAISHPREMLSNYAPRIEMIQINPEKISDVIGQGGKIIKKIIEETGSK 594 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++I+ DG + IAS+S + E+I++IT ++Y G+V K+ +FGA V ++ Sbjct: 595 ISIEQDGKIYIASTSKEGLNKTIEIIQNITKPIVPGQVYIGKVTKIFNFGALVEISPGKE 654 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 GLVHIS+LS RV DV+K GD V VK+LD + GKI LS+K + +N Sbjct: 655 GLVHISELSKTRVKNVEDVLKLGDEVTVKVLDLESNGKINLSIKALSEN 703 >gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. 7_2_43FAA] gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. 7_2_43FAA] Length = 704 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 289/681 (42%), Positives = 436/681 (64%), Gaps = 5/681 (0%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 AGR LKLE G+I S+ A +YG+TV+L V ++G DFFPL+V Y+ER Y+VG Sbjct: 10 AGRELKLEFGKIGMLSNLAAFISYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVG 69 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+++RE RP+EN IL R +DR +RPLF K Y+N+ QV+ V+ + ++ P ++++ Sbjct: 70 KIPGGFIKREGRPSENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 AAS +L LS +PF PV QV ING ++LNP E ++ L L V T + V+M+E Sbjct: 130 NAASLSLCLSSIPFTTPVAAVQVGLINGNFILNPTSKEREESELQLTVCATSERVMMIEA 189 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIK 249 ++ EDV+L AI FG + C+ +I+ + + KE +V + SK LE E+ + Sbjct: 190 GGQEIPEDVMLAAIKFGFDSCQDIIKFQEEAMQRFGKEKMVPELYKPSKELEIEIKEFAG 249 Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309 ++ + +I +K R +D++ +K+ + F ++ N G+I + ++Q +VVR ++L+ Sbjct: 250 AMIKEAMWITDKDERNSAMDEVNEKVYAEFEEKYPE-NVGDIKEIIYNLQKEVVRDMLLN 308 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 R D R + VR IS +VG+L RTHG+ LF RG TQ + V TLG D Q +D + Sbjct: 309 HHRRPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVGDIQIIDGIGEE 368 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 + +M HYNF + GEV + P RREIGHG LA RA+ P++P +FPYT+R+VSE+ Sbjct: 369 ESKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEFPYTIRLVSEV 428 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDEDHLG 487 S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+ D +L+DI G ED Sbjct: 429 LSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLTREEVLTDIQGIEDFFA 488 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT GIT++Q+D KI G+S ++ A+ A++ RLHIL+++S+ + R ++ Sbjct: 489 DMDFKVAGTVEGITSIQVDTKIKGLSFKVIEDAIMGARKARLHILDKISECIPGPRGEVS 548 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 + P+ I++I P++IR+VIG GGKVI I+E+TG K++I +DGTV ++S+ + A Sbjct: 549 TYAPKTSIISIDPEKIRDVIGAGGKVINKIIEETGVKIDIKEDGTVFVSSTDHDGVNKAI 608 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 +I +T +V ++Y G+V K+ FGAFV ++GL HIS+L RV K DVV G Sbjct: 609 SIIEGLTKEVKVGEVYLGKVTKIATFGAFVEILPNKEGLCHISKLDKARVNKVEDVVSVG 668 Query: 668 DTVWVKLLDFDDRGKIKLSMK 688 D + VK+ + D++G++ LS K Sbjct: 669 DEILVKVTEIDNQGRVNLSRK 689 >gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 716 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 291/698 (41%), Positives = 427/698 (61%), Gaps = 35/698 (5%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E AGRP K+E G++ S+ + + YGET VL VV ++G DFFPL V Y+E+ Sbjct: 19 ETMLAGRPFKVEMGKMCGLSNASAMIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKL 78 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG ++RRE RP E IL SR++DR +RPLF K +N+ + + VM D + SP Sbjct: 79 YAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPE 138 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + M+ AS +S +P+ GP+ G QV ++G+ VLNP ++ + S L L V+ T D ++ Sbjct: 139 IAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAATMDKIV 198 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ ED +L+AI H E K IE I+++ K I DF Q Sbjct: 199 MIEAGANEVDEDTMLNAIKAAHVEIKKTIEFINRIVAERGKPKI-----DF--------Q 245 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHSSWNEGEI 291 ++ D+ V I KY +DD K M + + E+ ++ Sbjct: 246 VVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYPDLTAADL 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 V +Q VVR +LD+ R+DGR +R ++A+VG+L R HGS +F RG TQ + Sbjct: 301 DLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTT 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG +D Q +D L+ Q ++ HYNF P + GE +P RREIGHG LA RA+ P Sbjct: 361 CTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVP 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPYT+R VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ GL+ +GD Sbjct: 421 VLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ + DI G ED G MDFKV GT GITA+QMD+KI G++ +I+ A ++ ++GRL+I Sbjct: 481 RWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYI 540 Query: 532 LNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 L+E+ K V++E R +L + P++ M IP D+I++VIG GGKVI+ I K+++ +D Sbjct: 541 LDEIIKPVIAEPRHELSRYAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQED 600 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V +++ + + A I++I + PE+ IYKG+V ++M+FGAFV ++GLVHIS Sbjct: 601 GHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHIS 660 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +L T+RV + DVV GD + VK+ D D +G+I LS + Sbjct: 661 KLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698 >gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] Length = 718 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 297/694 (42%), Positives = 433/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSKG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ Q+I + D P V Sbjct: 67 AAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ V+M Sbjct: 127 LAVTGASIATLMAQIPFNGPMAAVRVGLVGDDFIINPTYAETENGDLDLIVAGSPHGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A L K+ + P D + + + Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIQAQQDLLAEMGLKVVQEAPPEEDPTLSNYIRD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294 S IK+ L S F K R + +D +K+++ S + ++ N + + Sbjct: 247 RASDEIKKIL--SQFEYTKAQRDEALDVVKEQVASAINELPEENEVRAAATANSKALGNT 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+DI +R ++D VR+DGR + VR +S QVG+L +R HGS LF RG TQ + T Sbjct: 305 FKDITKHFMRRQIVDDNVRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLSTCT 364 Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT D Q + D L Q ++ HYNF P + GE M P RREIGHG LA RA+ PV Sbjct: 365 LGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPMRFPGRREIGHGALAERALVPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+GD+ Sbjct: 425 LPSKEAFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEGDE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ A+ QAK RLHIL Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIAQAVHQAKSARLHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M + + E R++ + PR+ + I D I VIG GGK I+GI E+TGAK++I+DDGT Sbjct: 545 DKMLQTIQEPRVETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I++ + + AR +I+ +T +Y G+V +++ GAFV F ++G++HISQL Sbjct: 605 VTISAVDESRAKKARNIIQGMTRKLHEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQL 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D V GD V VK+ + D++G+I L+ Sbjct: 665 ADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698 >gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1] gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1] Length = 717 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 33/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S+++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLDGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251 +SE+++LDAI + K + + + + K P+ + K F + ++++ +I + Sbjct: 194 VSEEILLDAIDKAYTYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EFKDDLRSLIYFE 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I +K+K +FSS +E EI+ +D + ++VR +L+ Sbjct: 253 LKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQLNDENEILFYKACDDFEQEIVRKSILE 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+R++ +LP+ FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ + D ++ILSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M V+S SR + Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSVISSSRGDISVN 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ A+ Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDNLKMQKAKAK 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------RVAKTSD 662 I SI P+V +IY G V K+ FGAF+ ++G + S + R ++ S+ Sbjct: 612 IESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRYGSDIRHSRYSN 671 Query: 663 ------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V V++ D D GKI+L + Sbjct: 672 RHSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714 >gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi] gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi] Length = 715 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 293/703 (41%), Positives = 440/703 (62%), Gaps = 32/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q++G+VLATYG + VLATV ++++ DF PL+V Y E+ YA GKIPG Sbjct: 8 LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 67 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + EIL+SR+IDR +RPLF K + E QVI + D + P +V M AA Sbjct: 68 GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+NG++++NP +E S LD+ V+G+ + + MVE AN+ Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252 +SED++L AI H K + A + + KE + + + + +EE+ I DL Sbjct: 188 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 247 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + +CF+ K R K I L+ K +FSS + + NE F+D + ++VR +L+ Sbjct: 248 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 307 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 K+R DGR +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT DEQ +D + G + Sbjct: 308 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 367 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 R +FM+HYNF P + GE R+ RREIGHG LA+RA+ ++P FPYT+R+VSEI Sbjct: 368 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 426 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD Sbjct: 427 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 486 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT +GIT QMD+KI +++++M AL+QA+ GR+HIL+ M V+S+SR+ + ++ Sbjct: 487 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 546 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 P++ + I D+I VIG GK ++ I ++ KV I+ +G + + +++ A+E I Sbjct: 547 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 606 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655 SI P+V +IY+G V K+ FGAF+ ++G + S + Sbjct: 607 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGTGNRYP 666 Query: 656 RVAKTSDV-----------VKEGDTVWVKLLDFDDRGKIKLSM 687 R ++ ++EG + VK++D D GKI L + Sbjct: 667 RFGGGDNIRGNVGLVRPPKLEEGQQIKVKIIDIDKFGKIDLEV 709 >gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly] gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly] Length = 717 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 33/703 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L LETG +A+Q++GAVLATYG + VLATV S+++ DF PL+V Y E+ YA GKIPG Sbjct: 14 LILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE +P + E+L+SR+IDR +RPLF K + E QV+ + D + P +V M AA Sbjct: 74 GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 A+ LS +PF GP+ ++ Y+N ++++NP DE Q S LD+ V+G+ D + MVE AN+ Sbjct: 134 TAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLDGITMVEGGANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251 +SE+++LDAI + K + + + + K P+ + K F + ++++ +I + Sbjct: 194 VSEEILLDAIDKAYAYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EFKDDLRSLIYSE 252 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQAKVVRTVMLD 309 L+ +CF+ K R K I +K+K +FSS +E EI+ +D + ++VR +L+ Sbjct: 253 LKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQINDENEILFYKACDDFEQEIVRKSILE 312 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R DGR +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT DEQ +D + G Sbjct: 313 DNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGD 372 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 +R +FM+HYNF P + GE R+ RREIGHG LA+R++ +LP+ FPYT+R+VSE+ Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRVVSEV 431 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ES+GSSSMATVC S++LM AGVP+ + VAGIAMGL+ + D ++ILSDI G+EDHLG M Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSDILGEEDHLGDM 491 Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT +GIT QMD+KI +++ +M AL+QA+ GR+HIL+ M V+S SR + Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSVISSSRGDISVN 551 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 P++ + I D+I VIG GK ++ I ++ +V I+ DG + + + +++ A+ Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDNLKMQKAKAK 611 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------RVAKTSD 662 I SI P+V +IY G V K+ FGAF+ ++G + S + R ++ S+ Sbjct: 612 IESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRYGSDIRHSRYSN 671 Query: 663 ------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687 ++EG V V++ D D GKI+L + Sbjct: 672 RNSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714 >gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 707 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 290/683 (42%), Positives = 430/683 (62%), Gaps = 11/683 (1%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 ETG++A+ +DG+V +YGET VL T V LK+ QDF PL V Y+E+ A G+ PGGY Sbjct: 16 FETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFPGGY 75 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 R+E RPT+ EIL SRMIDR +RPLF K Y ETQ++ ++ D ++ P V+++ ASAA Sbjct: 76 FRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAA 135 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLS 196 LM+S +PF GPV ++ I+G++++NP E + S +DL G++ LM+E A + Sbjct: 136 LMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEHYPLMIEGSAREFP 195 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRV 254 E+ + A+ F H + VI A +LA+ K V+ ++ + + ++++ L+ Sbjct: 196 EEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRSCVLFEENLA-ITNRLAELYSSQLQD 254 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314 + + K R K++ LK+++ + E + EI S ++ +Q + RT +L+ K R Sbjct: 255 ALYTSSKTERQKKLAKLKEELTAKILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRC 314 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRND 373 DGR E +R I+ + ++ R+HGSSLF RG+TQA+ + TL + + Q +D+ G Q Sbjct: 315 DGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQSKR 374 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F++HY F P + GEV R+ SRREIGHG LA R++ PV+P FPY +R+ SEI ES+ Sbjct: 375 FLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDFPYAIRVSSEILESN 434 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------DGDDFIILSDISGDEDHLG 487 GS+SMATVCG SLALMDAGVP+ VAGI++GLVK D + +L+DI G EDH G Sbjct: 435 GSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEEDFDWSRYCLLTDILGLEDHYG 494 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFK+AGT GIT Q+D+K+ GI ++M A+ Q+++ R+ IL+ M KV++ R ++ Sbjct: 495 DMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEIS 554 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 + PR+E + I PD+I +IG GGK I+ I ++GA++ I+DDGTV I SSS +EAAR Sbjct: 555 KHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAR 614 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EMI + V IY+ +VV V DFG F+ G +GLVHIS+LS V + VV+ G Sbjct: 615 EMIEDMVGEVTVGGIYRSKVVSVKDFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVG 674 Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690 + +WVK + D++G+ K S K Sbjct: 675 EEIWVKCIGVDEKGRYKFSRKAA 697 >gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] Length = 708 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 301/697 (43%), Positives = 447/697 (64%), Gaps = 13/697 (1%) Query: 10 EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 EW GR L ++ G++A+QS G+VL +G+TVVLAT +G DF PLTV +QE Sbjct: 3 EWRRNILGRELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K +NE QVI+ V+ D Sbjct: 63 RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P VV + AAS AL +S +PFEG V G +V Y +GQ++ P D ++G +D+ V+GT+DA Sbjct: 123 PDVVGIFAASLALNVSKIPFEGVVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 V MVE EA +++E+ ++ A+ F H+ K +++ ++ E I V++ +L E Sbjct: 183 VTMVEGEAKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEELVET 242 Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI---VSVF-EDI 298 ++++ +E+L + K R + + ++++++ S + EI VS F ED Sbjct: 243 FNELLNREELERRILVKVKKEREAALKEYEEQLLNQIVERLSVTDPEEIKPFVSEFYEDA 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R ++++K +R DGR +R IS +VGL RTHGS+LF RG+TQ++ +VTLG Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L FM+HYNF P TGEV + PSRREIGHG LA RA+ +LP + Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNILPPEEE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ES+GSSSMATVC SLALMDAGVPI K VAGIAMGL+ + D IIL+D Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT GITA QMD K+ G+S+ +++ AL QA+ R++IL+ M + Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597 +S R L ++ P +++ + P+++ +VIG GG+VI+ I++ KV IDD+ G VK+ Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS ++ A E+IR I EV ++ +G+V ++ +G F+ + GL+H S++ E + Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 + VK GDT+ V++++ DD G+++ +NT Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698 >gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] Length = 713 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 294/705 (41%), Positives = 431/705 (61%), Gaps = 36/705 (5%) Query: 2 FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 FD V E AGRP K+E G++ S+ + L YGET V+ VV ++G DFFPL Sbjct: 12 FDNFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E+ YA G+IPG ++RRE RP E IL SR++DR +RPLF K +N+ + + VM Sbjct: 72 VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + M+ AS +S +P+ GP+ G QV ++G+ VLNP ++ + S L L V+ Sbjct: 132 DPDCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVA 191 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T D ++M+E AN++ ED +L AI H E K +IE I+K+ K I DF Sbjct: 192 ATMDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKI-----DF-- 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284 Q++ D+ V I KY +DD K M + + E+ Sbjct: 245 ------QVVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + ++ V +Q VVR +LD+ R+DGR +R ++A+VG+L R HGS +F RG Sbjct: 294 DLSAADLDLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 TQ + TLG +D Q +D L+ Q ++ HYNF P + GE +P RREIGHG L Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPYT+R VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ Sbjct: 414 AERALVPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+ +G+ ++ + DI G ED G MDFKV GT GITA+QMD+KI G++ +I+ A ++ Sbjct: 474 GLITEGERWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKC 533 Query: 525 KRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 ++GRL+IL+E+ K V++E R +L + P++ M IP D+I++VIG GGKVI+ I Sbjct: 534 RKGRLYILDEIIKPVIAEPRQELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNC 593 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 K+++ +DG V +++ + + A I++I + PE+ IYKG+V ++M+FGAFV + Sbjct: 594 KIDVQEDGHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGK 653 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +GLVHIS+L T+RV + DVV GD + VK+ D D +G+I LS + Sbjct: 654 EGLVHISKLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698 >gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum V10Sc8a] Length = 705 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 431/693 (62%), Gaps = 6/693 (0%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + T + +AGR L +ETG++ ++G+ YGETVV+ V ++G DFFPL Sbjct: 1 MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 V+Y+E+ YAVGKIPGGYL+RE RP+E IL SR++DR +RPLF K +N+ +++ V+ Sbjct: 61 AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178 D E+ P +++M+ AS A+ +S +P+ GP+ G V ++G+ VL P + S L L V Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSDLQLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237 + ++ V+M+E AN++ +D +L AI+ GH E K +I I ++ K S + Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240 Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L E + E ++ + +K VR +++ +K + + F ++ I Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +Q +VR +LD++ R+DGR + +R ++A+VGLL R HGS LF RG TQ + + TLG Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D + + +M HYNF + GE P RREIGHG LA+RA+ PV+P Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VSE+ S+GS+S A++CGS+L+LMDAGVPI PVAGI+ GL+ +GD ++ + Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A + + R +IL+E M Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 K + E R + ++ P++ +P D+IR VIG GGKVI+ + K++ID++G V I Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 L + + MI++IT PEV IYKG+VV++M+FGAFV +DG+VHIS+L Sbjct: 600 CGQDLEKAQNCVAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV K DVV GD + VK+L+ D++GKI+LS K Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692 >gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus flavefaciens FD-1] Length = 704 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/702 (41%), Positives = 431/702 (61%), Gaps = 24/702 (3%) Query: 1 MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + T E +AGRPL +ETG+ S+G+ YGETVV+A V ++G DFFPL Sbjct: 1 MFENYRTFETTYAGRPLVVETGKTCGLSNGSCWVRYGETVVMANVTASAKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+Y+ER Y+VGKIPG + +RE +PTE IL SR +DR IRPLF K +N+ V++ V+ Sbjct: 61 SVDYEERLYSVGKIPGSFTKREGKPTEKAILTSRCVDRPIRPLFPKDMRNDVSVVMTVLS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 + ++SP + M+A S A+ +S +P+ GP+ G V ++G+ VLNP L++ + L L V Sbjct: 121 VEPDNSPEIAGMIATSIAISISDIPWNGPISGINVGLVDGEIVLNPTLEQRAKTDLVLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVID 233 +GT + ++M+E AN++ ED +L+AI+ GH E K ++ I + K E + +D Sbjct: 181 AGTAEKIVMIEAGANEVPEDTMLEAIMKGHEEIKKMVAFIKDIQSQIGKPKFAFESMEVD 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEG 289 F +EE ++ +K L + +K VR ++ +DD+ K + + + +E Sbjct: 241 HDMFDAIEEFAAERVKFALDTN----DKNVRDERLAPIVDDIHAKFDEQYPEQIAMIDE- 295 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 +Q K+VR + + K R+DGR + +R ++A+VGLL R HGS LF RG TQ + Sbjct: 296 ----CIYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVL 350 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + TLG D Q +D L + +M YNF + GE P RREIGHG LA RA+ Sbjct: 351 TIATLGPVSDAQRIDGLDEEESKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERAL 410 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467 PV+P +FPY LR+VSE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL+ Sbjct: 411 APVIPSVDEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITK 470 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D D+F+ + DI G ED G MDFKV GT GITA+Q+D+K+ G++ I+ A ++ ++ Sbjct: 471 PDSDEFMTMVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIKEAFEKTRKA 530 Query: 528 RLHILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RL+IL+E M K + E R + ++ P++ IP D+IR VIG GGK I+ I K++ Sbjct: 531 RLYILDEVMLKAIPEPRKTVNKYAPKMLQTKIPADKIREVIGSGGKTIQKISADCDVKID 590 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I DDG V I+ A +++ +I + PEV IY+G+VV++MDFGAFV DGL Sbjct: 591 ISDDGNVFISGIDAGNSNKALQIVETIANGPEVGAIYRGKVVRIMDFGAFVEIVPGVDGL 650 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 VHIS+L RV K D+V GD + VK+ + D +G+I LS K Sbjct: 651 VHISKLDKSRVEKVEDIVSIGDEIVVKVTEIDRQGRINLSRK 692 >gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 711 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 296/695 (42%), Positives = 442/695 (63%), Gaps = 28/695 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + LETG++A+Q+DG+V+ G T++LAT+V + KDG DF PLTV+Y+E+ A G+ Sbjct: 15 GREITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEAKDGIDFLPLTVDYREKFAANGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PGG+L+RE RP++NE+L R+IDR +RPLF K Y E Q++I ++ +D ++ + Sbjct: 75 VPGGFLKREGRPSDNEVLTMRLIDRVLRPLFPKDYHAEIQLMIQMISYDENVEATSLTGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S LPF+GP+ +V ING++V+NP + + LD+ + + D+V+MVE E Sbjct: 135 AASAAIAVSDLPFDGPISEVRVGRINGEHVINPTPAQIGELELDMVIGASMDSVVMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE+ +++AI + H+ K IEA +LA K +++S E ++ ++E+ Sbjct: 195 MQEISEEEMVEAIKYAHDAIKVQIEAQLRLASHVEKAQT---KREYS--HETHNEEVREE 249 Query: 252 LRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSW---NEGEIVSVFEDI 298 + + + +P K+ R K + Y + W N G + F D+ Sbjct: 250 VMAATYDKVYEVAKSGLP-KHERSA---GFKAILNEYLEGKDEEWLSANTGFAKTYFHDV 305 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K +R ++L+ R+DGR + VR I ++V L HGS++F RG+TQ++ VTLGT Sbjct: 306 EYKAMRDMVLNDGQRLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSL 365 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D +D + T F +HYNF P +TGE + SRREIGHG LA+RA++ ++ + Sbjct: 366 DANRIDDATFTGEEKFYLHYNFPPFSTGEARPIRGVSRREIGHGNLAQRALYQMV--DPE 423 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 P+T+R+VS+I ES+GSSSMATVC +LA+MDAGV + +PV+GIAMGL+ DG+ + +LSD Sbjct: 424 NPFTIRVVSDILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAVLSD 483 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKV GT+ GITA QMD+K+ G+S I+V AL+Q+ GRLHIL EM K Sbjct: 484 ILGDEDHLGDMDFKVTGTEKGITACQMDIKVKGLSYEILVKALKQSLEGRLHILGEMLKT 543 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKI 595 + E+R +L P++ + + + I +IG GGK I+GI TG V I DD G V+I Sbjct: 544 MPETRTELKPNAPKIYKLTVKKEFIGPIIGPGGKNIQGIQADTGTTVTISEVDDRGHVEI 603 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + A ++ A EMIR+I PE+ ++Y+G V V +GAFV GL+HIS++ Sbjct: 604 SGKDAAMMDKALEMIRAIAFEPEIGEVYEGIVRGVQTYGAFVEIAPKVQGLLHISEIDWT 663 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R+ DV+KEGDTV VKLL+ D GK+KLS KV+ Sbjct: 664 RIKNVEDVLKEGDTVKVKLLEVDKAGKMKLSRKVL 698 >gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C str. Eklund] gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C str. Eklund] Length = 705 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 289/689 (41%), Positives = 442/689 (64%), Gaps = 7/689 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E AGR LK E G++ SD A+ +YG+TVVL V K+G DFFPL++ YQ Sbjct: 3 HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP++ IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 63 ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P++++M AS AL LS +PF PV V ++G++V+NP + + S LDL V T+D Sbjct: 123 LPNILAMNGASLALCLSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESILDLTVCATKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241 V+M+E ++ EDV+ DAI+FG ECK + K+ + K+ +++ D + +E Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIANFQQKVMEQYGKQKAELILHEID-ANIE 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +E+ + + ++ + +I +K +R + ID++K+K+ F+ ++ N +I +Q + Sbjct: 242 KEVKEFAFDMVKEAMYITDKDLRNRAIDEVKEKVAEEFNEKYPD-NLADIGEAIYKMQKE 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR ++L++K R DGR + +R +S++V LL RTHGS LF RG TQ + V TLG+ + Q Sbjct: 301 VVRNMILNEKRRPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + +M HYNF + GEV + P+RREIGHG LA +AI P++P +FPY Sbjct: 361 VLDGIEEETLKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479 +R+VSE+ S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV +D + IL+DI Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSEDLEKEEILTDI 480 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED G MDFKVAGT+ GITA+Q+D KI G+S + + A+ A++ RL IL ++ + Sbjct: 481 QGLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCI 540 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R ++ ++ P+V M+I P +I++VIG GGK I I+++TG K++I +DG+V + + Sbjct: 541 DKPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAED 600 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A MI + + ++Y G+V K+ +FGAFV ++GLVHIS+L +RV K Sbjct: 601 YESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNK 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD + VK+ + D G++ LS K Sbjct: 661 VEDVVSVGDEILVKVTEIDSMGRVNLSRK 689 >gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii ATCC 33406] gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 717 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 297/691 (42%), Positives = 446/691 (64%), Gaps = 16/691 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+ + G ++LATVV + K G DF PL+V+YQE+ + GK Sbjct: 18 GREIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVDYQEKFASNGK 77 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+L+RESR ++ EILISR++DR++RPLF + + +TQV I ++ D + P ++ + Sbjct: 78 IPGGFLKRESRLSDYEILISRLVDRAMRPLFPEDFHADTQVAITLISADADVLPDALACL 137 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AA AA+ +S +PF GPV +V +NG++++NP+ + ++ L+L V+ + D V+MVE E Sbjct: 138 AAQAAMSVSDIPFNGPVSEVRVISLNGEFIINPKPAQIEKAELELIVAASYDNVIMVEGE 197 Query: 192 ANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKDF---SKLEEEMS 245 +++SE+++L+AI H+ + V++ + A K + D+ K+ + + Sbjct: 198 MSEVSEELMLNAIKVAHDAIRTQCIVLKELESAAGKTEKRTYSHEVNDWDLKKKINDAVY 257 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 Q + E ++ K R + +KK + ++H+ + I + D++ VR Sbjct: 258 QQVYEVAKLGN--ANKNTRAEGFKAVKKAYIESLPADHTE-DLTLIGKYYHDVEKDAVRN 314 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD++ R+DGR E +R I ++VG L HGS++F RG+TQ++ VT GTR DEQ +DS Sbjct: 315 LILDERKRLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDS 374 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + N M+HYNF +TGEV P RRE+GHG LA RAI V+P + PYT+RI Sbjct: 375 AMFSGNNKLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRI 434 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483 VS+I ES+GSSSMATVC +LALMDAG+ I PV+GIAMGL+ D + +LSDI GDE Sbjct: 435 VSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTGRWAVLSDILGDE 494 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT+ GITA QMD+K+ G+S +I+ ALQQA RGRLHIL+EM K L+ R Sbjct: 495 DHLGDMDFKVTGTEKGITACQMDIKVDGLSYDILSQALQQANRGRLHILSEMKKTLATPR 554 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600 L PR+ ++ IP + I VIG GGK+I+ I + +GA VNI D+ G V I S Sbjct: 555 EDLKPHAPRMIMIQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEEKDNAGWVSIFSKDK 614 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +++A I+ I +PEV ++Y+G+V + FGAFV F +DGL+HIS++ ER+ Sbjct: 615 TALDSALSQIKGIVTLPEVGEVYEGKVKSITAFGAFVEFLPGKDGLLHISEIKWERLDTM 674 Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 V++ G+TV VKL++ D + GK +LS KV+ Sbjct: 675 EGVLEVGETVKVKLVEVDKKTGKYRLSRKVL 705 >gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] Length = 714 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 290/698 (41%), Positives = 428/698 (61%), Gaps = 35/698 (5%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E AGRP K+E G++ S+ + L YGET VL VV ++G DFFPL V Y+E+ Sbjct: 19 ETTLAGRPFKVEMGKMCGLSNASALIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKL 78 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG ++RRE RP E IL SR++DR +RPLF K +N+ + + VM D + SP Sbjct: 79 YAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPE 138 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + M+ AS +S +P+ GP+ G QV ++G+ VLNP ++ + S L L V+ T D ++ Sbjct: 139 IAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAATMDKIV 198 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ ED +L+AI H E K +I I+ + K I DF Q Sbjct: 199 MIEAGANEVDEDTMLNAIKAAHVEIKKIITFINGIVAERGKPKI-----DF--------Q 245 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHSSWNEGEI 291 ++ D+ V I KY +DD K M + + E+ ++ ++ Sbjct: 246 VVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYPDLSDADL 300 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 V +Q VVR +LD+ R+DGR +R ++A+VG+L R HGS +F RG TQ + Sbjct: 301 DLVSYKMQKYVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTT 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG +D Q +D L+ Q ++ HYNF P + GE +P RREIGHG LA RA+ P Sbjct: 361 CTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVP 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPYT+R VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ GL+ +GD Sbjct: 421 VLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ + DI G ED G MDFKV GT GITA+QMD+KI G++ +I+ A ++ ++GRL+I Sbjct: 481 RWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYI 540 Query: 532 LNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 L+E+ K V+++ R +L + P++ M IP D+I++VIG GGKVI+ I K+++ +D Sbjct: 541 LDEIIKPVIAQPREELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQED 600 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V +++ + + A I++I + PE+ IYKG+V ++M+FGAFV ++GLVHIS Sbjct: 601 GHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHIS 660 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +L T+RV + DVV GD + VK+ D D +G+I LS + Sbjct: 661 KLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698 >gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis Fe/C-56] gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis Fe/C-56] Length = 694 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 296/697 (42%), Positives = 425/697 (60%), Gaps = 20/697 (2%) Query: 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 F+ +V +E G+ L ETG+IARQ++GAVLA ET V ++V +L++ DF PL V Sbjct: 3 FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ATLEEPVDFLPLRV 60 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +YQE+ ++GK GG+++RE RPTE EIL SR+IDRS+RP + Q++ V +D Sbjct: 61 DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180 + P +++ SAAL +S +P V G +V +IN +V+NP + + D ++L ++G Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMELVLAG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---------PIV 231 T+ A+LM+E + +E+ V++AI FGH + +AI K KE P Sbjct: 181 TEKAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQIGKEKNTSAVVPLPEQ 240 Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291 + + + +E + S +++ I EK L+ +V E+ + I Sbjct: 241 VQTAVNTLVEGKFSDLLQ--------IKEKKAFEAASKQLENDIVEKLQEENEIFTPLNI 292 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + F+ ++ +R+++ + +R DGR T+R IS L RTHGS LF RG+TQ + V Sbjct: 293 KTAFKQAKSDYMRSLIRKQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAV 352 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG+ Q + L+G F + Y F P + GEV R+G+P RREIGHG+LA +A+ Sbjct: 353 CTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSH 412 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 LP A+FPYT+RI S ITES+GSSSMA+VCG LALMDAGVPI P+AGIAMGL+ D D Sbjct: 413 ALPDPAKFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDD 472 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ILSDISG EDHLG MDFKVAG GITA QMD+K+ GI+ IM AL QAK GR +I Sbjct: 473 HVTILSDISGLEDHLGDMDFKVAGNAEGITAFQMDIKVEGITPEIMQAALAQAKSGRQNI 532 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L M L+ + L ++ PR+E M I P++I VIG GGK IR I+E+ G +++I+D G Sbjct: 533 LETMKATLASPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSG 592 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I++SS IE A+ +I + EV KIY+G+V ++ FGAFV ++GL HIS+ Sbjct: 593 LVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISE 652 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S +R+ D VK+GD + VKLL +++G+ KLS K Sbjct: 653 FSKQRIENVGDFVKQGDILPVKLLSINEKGQYKLSHK 689 >gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] Length = 708 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 302/706 (42%), Positives = 446/706 (63%), Gaps = 23/706 (3%) Query: 1 MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF++ T + GR + +ETG++ARQ+DGAV+ G+T++LATVV + K+G DF PL Sbjct: 1 MFEITTQSVALPDGREITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+YQE+ + G+IPG + RRE R ++EILISR++DR++RP+F Y +TQV+I ++ Sbjct: 61 SVDYQEKFASAGRIPGSFQRREGRLGDHEILISRLVDRALRPIFPDNYHADTQVMITLIS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D E P ++ +AAS+AL +S +PF GP+ +V I+GQY +NP+ E ++ ++DL V Sbjct: 121 ADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINPKTAELERATIDLIV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDS 234 + T+ + MVE E ++ SE V++A+ H +C+ E +K+ K +E Sbjct: 181 AATEKDICMVEGEMDECSEAEVVEALKVAHEAIKIQCQAQKELEAKVGKTVKRE------ 234 Query: 235 KDFSKLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 + +EE+ ++ + P K R + ++ + ++ F E + N Sbjct: 235 YNHETHDEELRAAVRAATYDKIYEVARRQNPSKKGRSEGFKAVRDEYLASFP-EGAEVNV 293 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 G I + F D++ + R ++LD++ R+DGR + +R ISA+ G L HGS+LF RG+TQ+ Sbjct: 294 GLIKTYFHDLEWEASRRLVLDERTRLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQS 353 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DEQ VD + F++HYNF +TGEV RREIGHG LA R+ Sbjct: 354 LTTVTLGTKTDEQIVDQTMFQGYSKFLLHYNFPGFSTGEVKPNRGAGRREIGHGNLAHRS 413 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + VLP + PYT+RIVS+I ES+GSSSMATVC ++ALMDAG+ I PVAGIAMGL+ Sbjct: 414 LKKVLPPAEENPYTIRIVSDILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLIS 473 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 DGD + +LSDI GDEDHLG MDFKV GT+ GI A QMD+K+ G+S ++ AL+QA+ GR Sbjct: 474 DGDKYAVLSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKVDGLSYEVLAQALEQARVGR 533 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL EM K +S+ R L PR ++ I +QI VIG GGKV++ I + +GA VNID Sbjct: 534 LHILGEMKKGISDVRSDLKPHAPRAMVIKIDTNQIGAVIGPGGKVVQDIQKDSGAVVNID 593 Query: 589 DD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 + G V I ++S ++ A ++ I VPEV + Y G+V + FGAFV F +DG Sbjct: 594 EHDNAGWVSIFATSKESMDKAVSRVKGIVAVPEVGETYVGKVKTIQPFGAFVEFMPGKDG 653 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 L+HIS++ ER+ V++ G+ V VKL+D D + GK +LS KV+ Sbjct: 654 LLHISEIKWERLETMDGVLQVGEEVTVKLIDVDKKTGKYRLSRKVL 699 >gi|168333339|ref|ZP_02691623.1| Polyribonucleotide nucleotidyltransferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 698 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 286/696 (41%), Positives = 445/696 (63%), Gaps = 11/696 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T ++E AGR LK+E G++A ++GA L TYGET +LAT V K+G DFFPL+VNY Sbjct: 2 VKTYKMELAGRELKVEIGKMAELANGAALVTYGETCILATAVASDKPKEGIDFFPLSVNY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YA+GKIPGG+L+RE RP++ +L SR+IDR +RPLF K Y+N+ + VM + + Sbjct: 62 EEKIYAIGKIPGGFLKREGRPSDKAVLTSRVIDRPLRPLFPKDYRNDVVITTTVMSVEQD 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 SP + SM+AAS L +S +PF GPV V ++G+ V+NP + + + S L L VS ++ Sbjct: 122 CSPEITSMIAASLVLDISEIPFNGPVGSVFVGLVDGEIVINPTMAQREKSQLALTVSSSK 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS---K 239 D V+M+E AN++SE+V+L+AI GH + +++ IS++ C K P D + ++ + Sbjct: 182 DKVMMIEAGANEISEEVMLEAIYKGHQANQEIVKFISEIRDDCGK-PKRYDYEKYTLPLE 240 Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + + + +++ K + + F +K R ++++L +++ + + E + F Sbjct: 241 IYDRVCEIVGKPAMEGAIFTTDKLARGMRLEELLQEVKAVMAEEDMDAMP-YVEDAFYKY 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K+VR +L R DGR + +R + A+V L+ R HGS +F RG TQ + + TL Sbjct: 300 EKKIVRDSILKDHKRPDGRALDEMRILKAEVDLIPRVHGSGMFTRGQTQVLTITTLAPLS 359 Query: 359 DEQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D L +M HYNF P + GE + RREIGHG LA RA+ PVLP Sbjct: 360 EAQIIDGLDELDVLKRYMHHYNFPPFSVGEAKPPRSVGRREIGHGALAERALIPVLPTEE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475 +FPY +R+VSE+ S+GS+S A++CGS+LALM AGVPI PVAGI++GLV + +DF++ Sbjct: 420 EFPYAMRLVSEVLSSNGSTSQASICGSTLALMAAGVPIKAPVAGISVGLVTGESTEDFVL 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534 L+DI G ED G MDFKV G+ +GITA+QMDMKI G++ I+ A +Q + R +I++E Sbjct: 480 LTDIQGLEDFFGDMDFKVGGSKNGITAIQMDMKIDGLTYEIIKGAFEQTRIAREYIIDEI 539 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M K + ++R L ++ P + + + PD+I +IG GK I I+E+TGAK++I+DDG + Sbjct: 540 MLKAIDKTRETLSKYAPCITQIKVNPDKISEIIGQKGKTINKIIEETGAKIDIEDDGRIA 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I ++ A + E+I I EV +++ G+VVK+++ GAFV ++GLVHISQ++ Sbjct: 600 ICTNDEASAKRTIEIIERIAKXLEVGQVFLGKVVKIINIGAFVELAPGKEGLVHISQIAH 659 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV K DV+K GD++ VK+++ D +G++ LS K + Sbjct: 660 NRVEKVEDVLKVGDSIEVKIIEIDKQGRVNLSRKAL 695 >gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC 25986] gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC 25986] Length = 748 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 291/687 (42%), Positives = 433/687 (63%), Gaps = 14/687 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 E G+ E+G +A+Q+ GA L G+T +L TVV + K+ DFFPLTV++ E+ Y Sbjct: 8 FELYGKTYTFESGELAKQATGACLVKQGDTTMLDTVVVSKERKN-YDFFPLTVDFNEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGGYL+RE RP+E L +RMIDR IRP F + ++NE ++ + D + V Sbjct: 67 AAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPEGFRNEVHIVATSLVADQVNPFDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 ++++ AS A+ L G+PFEGP+ ++ + G++++NP +E + S LDL + G+ D + Sbjct: 127 INVMGASLAMTLGGVPFEGPLACVRIGRNVETGEFIVNPTYEERENSDLDLELGGSADFI 186 Query: 186 LMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 MVE A ++SED +L A+ FG C+ +E +++ ++ IV + Sbjct: 187 SMVEAGAEEISEDDMLAAMKFGQEALAAFCQAQVEFVAEWEQVNGA--IVKKEYPLDQPV 244 Query: 242 EEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 EE+ + I +++ + +K R +++ LK+ + + F+ E + E EI + + Sbjct: 245 EEVQERIFAHYDEMAAALRDADKLSRIGKVEALKESIRAEFTDEEQAAWEREIPVALKKL 304 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K +RT++++ R+DGR ++ +R I + L HGS LF RG TQ + V++LG Sbjct: 305 EKKAMRTMVVETGERVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLN 364 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 + Q +D++ T+ +M HYNF P TGE RMG+P RREIGHG LA RA+ PVLP + Sbjct: 365 EGQRLDTIEPTEGKRYMHHYNFPPFCTGETGRMGSPKRREIGHGNLAERALLPVLPDENE 424 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VSE+ ES+GSSSMA+ CGS+LALMD GVPI +PV+GIAMGL+++ ++LSD Sbjct: 425 FPYAIRVVSEVMESNGSSSMASTCGSTLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKV GT GITA+QMD K G++ +I+ ALQQAK GR IL +M V Sbjct: 485 IQGLEDFLGDMDFKVTGTTEGITALQMDNKATGLTFDILARALQQAKEGRAFILQKMLDV 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + E R PR+ + +P D+IR+VIG GGKVIRGI ++TGA V+I +DGTV + + Sbjct: 545 IPEPRHTTRSTAPRIVSIQVPTDKIRDVIGSGGKVIRGIQDETGASVDIQEDGTVFVGGT 604 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + ++ A E I+ I VPE + Y G+VV + FGAFV+ +DGL+HIS+++ RV Sbjct: 605 GES-VDQAVERIKLIIKVPEPGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAKGRVE 663 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKL 685 K DV+ GD V V +++ DDRGKI L Sbjct: 664 KVEDVLNVGDEVKVVVIEVDDRGKISL 690 >gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC 6803] gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC 6803] Length = 718 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 303/695 (43%), Positives = 427/695 (61%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T + +DG DF PLTV+Y+ R Y Sbjct: 8 ISFDGRDIRLKMGTLAPQAGGSVLIQSGDTAVLVTATRAKG-RDGIDFLPLTVDYEGRLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E LISR+IDR +RPLF ++E Q++ + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF+GP+ +V + +++NP E G LDL V+GT ++M Sbjct: 127 LAVTGASVAVILAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVAGTPAGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I A +L + EP +++ + Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVQDLINAQRELMTDLGITLATSEPPPVNTAVEEFIAN 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------HSSWNEGEIV-S 293 S+ I L F K R +D++K V +E S + ++V + Sbjct: 247 RASKKIITVL--GQFDLGKDGRDAALDEIKATEVETAIAELPETDPVKQSVEEDPKLVGN 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 +++ + K++R ++D VR+DGR E VR IS +VG L +R HGS LF RG TQ + + Sbjct: 305 LYKALTKKLMRKQIVDDGVRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLA 364 Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG+ D Q D L ++ HYNF P + GE M +P RREIGHG LA RAI P Sbjct: 365 TLGSPGDAQDLADDLHPEDEKRYLHHYNFPPYSVGEARPMRSPGRREIGHGALAERAIIP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD Sbjct: 425 VLPPQEDFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIKEGD 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S ++ A+ QA RLHI Sbjct: 485 EIRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIDGLSMEVVSKAIMQALPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M + E R +L F PR+ + I P+ I VIG GGK I+GI EQT K++I DDG Sbjct: 545 LDKMLATIREPRPELSPFAPRLLTLKIEPEHIGMVIGPGGKTIKGITEQTSCKIDIADDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IASS E AR+MI ++T ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIASSEGERAERARQMIYNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K D V GD V VK+ + D +G++ L+ Sbjct: 665 LTEGRVGKVEDEVGVGDEVIVKVREIDSKGRLNLT 699 >gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM 14684] gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM 14684] Length = 761 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 288/690 (41%), Positives = 442/690 (64%), Gaps = 8/690 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V + +E G+ + ETGR+A+Q+ GAV+ G+T+VL+T +L+D DF PLTV+ Sbjct: 5 VTRLSVEIGGKEISFETGRMAKQASGAVVVRSGDTMVLSTATAG-NLRD-VDFLPLTVDV 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +ER YA GKIPG + +RE R E L +RM+DR IRPLF K ++ ETQ++ + D E Sbjct: 63 EERMYAAGKIPGSFFKREGRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVSGT 181 V++M ASAALM+S +PF PV ++ ++G +V+NP ++ + LDL V+GT Sbjct: 123 HPYDVLAMNGASAALMISDIPFPTPVGSVRIGKVDGNFVVNPNEEDLLENTDLDLIVAGT 182 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240 ++A+LMVE AN++ E +LDA+ H+ K + +LA+ K ++ +L Sbjct: 183 EEAILMVEAGANEIPEAEILDALDIAHDAIKKLCRLQWELARKAGKPKTEVEVPQVDERL 242 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299 ++++ L + + +K R ++ ++ + Y + E + ++ F+ ++ Sbjct: 243 LRQLTRSHGRKLDRATAVVDKLERQDATKAVEAEVFARYAADEDDAETRAKVQLAFDKLE 302 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 ++R + KK R DGR ++ +R I+ +VG+ RTHGS+LF RG TQA+ +LGT + Sbjct: 303 KSLIRERIAIKKKRPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTRE 362 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E +D+L R + HYNF P + GE M P RR+IGHG LA RA+ P++P T +F Sbjct: 363 EMRLDTLGLETRKYYFHHYNFPPFSVGEAGFMRGPKRRDIGHGALAERALVPMVPSTEEF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PY +R+VS+I ES+GSSSMA+VCGSSL+LMDAGVP+ +PVAGIAMGL+K+GDD+I+LSDI Sbjct: 423 PYAIRVVSDILESNGSSSMASVCGSSLSLMDAGVPLKRPVAGIAMGLIKEGDDYIVLSDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +G EDHLG MDFKVAGT GITA+QMD+KI G++ +I+ AL QAK GR IL +M+ L Sbjct: 483 AGIEDHLGDMDFKVAGTSEGITALQMDIKITGVTFDILRDALAQAKEGREFILGKMATAL 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 ++ R +L ++ PR+ + I P++I +IG GG+ IRG+ E+ A+++++D+G V I + + Sbjct: 543 AKPREELSKWAPRISTVQIDPEKIGLLIGKGGETIRGLCEEFEAQIDVNDEGQVLIYAQN 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVA 658 +A + IRS+T E+ +KG+VVK FGAFV DGL+HIS +S RV Sbjct: 603 GELGDALADRIRSMTKEVEIGDAFKGRVVKTTTFGAFVELAKGTDGLLHISNISPGRRVD 662 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687 +V+ +GD + V++++ D +RG+I L + Sbjct: 663 TVEEVINKGDEIDVRVVEVDRERGRIGLRL 692 >gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus elongatus BP-1] gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus elongatus BP-1] Length = 715 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 291/693 (41%), Positives = 433/693 (62%), Gaps = 18/693 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I GR +K+ + A Q+ G++L + GET VL T + ++G DF PL V+Y+ER Y Sbjct: 8 IPLDGRDIKVVLQKFAPQAAGSILISSGETAVLVTA-NRAAAREGIDFLPLVVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILI R+IDR +RPLF + +++ QV+ + D + P V Sbjct: 67 AAGRIPGGFLRREGRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENAPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + ++V+NP E ++G LDL V+G+ D V+M Sbjct: 127 LAVTGASIAVLLAQIPFNGPMAAVRVGLVGDEFVINPTYKEIERGGLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242 VE AN+L E +++AI F + + +I+A L K + EP ID + + + Sbjct: 187 VEAGANELPEADMIEAIDFAYEVIRDLIQAQRDLLKELGIDIVRAEPPAIDPTLENFIYD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294 ++ +K L+ F +K VR +D+++ + ++ ++ N + ++ Sbjct: 247 RAAEPVKAILK--RFEKDKNVRDAALDEVQGAIAQEIAALPEDDPVAVAAAENPKALPTL 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+ + K++R ++++ VR+DGR + VR I +VG+L +R HGS+LF RG TQ + V T Sbjct: 305 FKAVTKKLMRQQIIEEGVRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG+ D Q +D L ++ HYNF P + GEV + +P RREIGHG LA RA+ PVL Sbjct: 365 LGSPADAQALDDLHPEDSKRYLHHYNFPPYSVGEVKPLRSPGRREIGHGALAERALEPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ SDGS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+G++ Sbjct: 425 PPKEEFPYVIRVVSEVLSSDGSTSMGSVCGSTLSLMDAGVPIRKPVSGAAMGLIKEGNEV 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+ ++ A++QA+ RLHIL Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPVAVIQQAIEQARPARLHILE 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M VL + R QL PR+ + IPPD I VIG GGK +RGI EQ KV+I ++G V Sbjct: 545 KMLAVLDKPRPQLPPSAPRLLTLQIPPDMIGLVIGPGGKTVRGISEQYNVKVDISEEGLV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + + AR I +T +Y G+V +++ GAFV ++G++HISQL+ Sbjct: 605 TITAPNETNAKQARAAIEGLTRKLNAGDVYLGRVTRIIPIGAFVELLPGKEGMIHISQLA 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D VK GD + VK+ + D +G+I L+ Sbjct: 665 EYRVGKVEDEVKIGDEIVVKIREVDSKGRINLT 697 >gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa HTCC2155] gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa HTCC2155] Length = 696 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 282/684 (41%), Positives = 439/684 (64%), Gaps = 15/684 (2%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 RP+ +ETG++A ++ AV T GETVVL T + + G DFFPL V Y+E+ A GK Sbjct: 15 RPITIETGKMALLANAAVTVTQGETVVLVTAC-SSAPRAGIDFFPLMVAYREKYSAAGKF 73 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 GG+++RE+RP+E+EIL SRM DR +RPLF K + +E Q+ V+ +D + P ++M+ Sbjct: 74 LGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLAMLG 133 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 +SAALMLS LPF+GP+ +V ++G++V NP ++ + S L+L SGT +M+E + Sbjct: 134 SSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPGKTIMIEGDC 193 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEM----SQ 246 ++LSE+ + +A+ + ++ + + +A +L K KD++ K+EE++ + Sbjct: 194 DELSEERLFEALKYADSKVEVMAKAQLELQATFGKA-----KKDYATDKIEEDVKAAVAT 248 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 I + +C + ++ R +D + + ++ GE+ + + +R + Sbjct: 249 AISGKIDEACLVIDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSHLIEMNIRRL 308 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ++++ R DGR +E +R +SA+ L+ RTHGS+LF RG+TQA+V VTLG + Q +++ Sbjct: 309 IIEEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETI 368 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 G F +HYNF + GE R+ REIGHG LA RA+ ++P A +PYT+R++ Sbjct: 369 RGRYDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMP--ADYPYTVRVI 426 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ S+GS+SMA++CG SLALMDAGVP+ K VAGI++GLV++ D +++++DI G EDH Sbjct: 427 SEVMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMITDILGSEDHY 486 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGT GITA Q+D+KI G+S ++M A+ + K R+ IL+ M LS ++ ++ Sbjct: 487 GDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSSAQEEI 546 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 + P+V M I P++I +IG GGK I+ I E+TGA++N++DDGTVK+ ++ ++AA Sbjct: 547 SDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFTADKTALKAA 606 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E + S PE KIY+G VV V +FGAFV G GL+HIS+L+ RV K +DVV E Sbjct: 607 IEQVESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRVEKVTDVVNE 666 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD V VK+L+ DDRG+++LS K Sbjct: 667 GDKVSVKILEIDDRGRMRLSRKAA 690 >gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D str. 1873] gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D str. 1873] Length = 706 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 294/688 (42%), Positives = 436/688 (63%), Gaps = 5/688 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E AGR LK E G++ SD A+ +YG+TVVL V + K+G DFFPL++ YQ Sbjct: 3 HVFETTVAGRKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP++ IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 63 ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P++++M AS AL LS +PF PV V I+G++++NP + + S LDL V T++ Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESILDLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242 V+M+E ++ EDV+ DAI+FG ECK + + K+ + K+ +I + + +E+ Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINADIEK 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 E+ + ++ + +I +K +R K +D++K+K+ FS ++ N +I V +Q +V Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNEEFSEKYPD-NLADIGEVIYKMQKQV 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L++K R DGR + +R +SA+ LL RTHGS LF RG TQ + V TLG+ + Q Sbjct: 302 VRNMILNEKRRPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQV 361 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + +M HYNF + GEV + P+RREIGHG LA +AI P++P +FPY Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480 +R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV D IL+DI Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G ED G MDFKVAGT+ GITA+Q+D KI G+S + + A+ A+ RL IL ++ + Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKVINDCID 541 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + R ++ ++ P+V M I P +I++VIG GGK I I+++TG K++I +DG V + + Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGSGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A EMI + + +IY G+V K +FGAFV ++GLVHIS+L +RV K Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKTSNFGAFVSILPGKEGLVHISKLDVKRVNKV 661 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD + VK+ + D G+I LS K Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRK 689 >gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis str. Paraca] gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis NIES-39] Length = 720 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 300/694 (43%), Positives = 431/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GA+L G+T VL T + G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP + L SR+IDR +RPL +++ Q++ + D + P V Sbjct: 67 AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + +++NP E G LDL V+G+ V+M Sbjct: 127 LAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKLEE 242 VE AN+L E V++AI FG+ +I+A +++ + +EP+ D ++E Sbjct: 187 VEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELNIDNPVEEPLPEDRTLIEFIQE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK-KMVSYFSSEHSS--------WNEGEIVS 293 +++ +K+ L F K R +D +K+ ++VS +S N + Sbjct: 247 RVTEPVKKVL--GQFELNKDERDAALDVIKEEQIVSAIASMPEDDPISLFNIENPKAVGM 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 +F+DI K++R +L VR+DGR+ + VR +S +VGLL +R HGS LF RG TQ + + Sbjct: 305 IFKDITKKLMRQQILTDGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIA 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L +M HYNF P + GE M +P RREIGHG LA RA+ PV Sbjct: 365 TLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERALLPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP QFPY +RIVSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G + Sbjct: 425 LPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++ A+ +AK RLHIL Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPARLHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M +VL R L F PR+ + I PD I VIG GGK I+GI E+TG K++IDDDGT Sbjct: 545 EKMLEVLPSPRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS+ A ++++ +T +Y G+V +++ GAFV ++G++HISQL Sbjct: 605 VTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIHISQL 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D V GD V VK+ + D +G+I L+ Sbjct: 665 AEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLT 698 >gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens W5455] gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens W5455] Length = 751 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 289/690 (41%), Positives = 437/690 (63%), Gaps = 12/690 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T + G+ L +TG++A+Q++ AV+A++GET +L T + G DFFPL V+++E Sbjct: 4 TYTLNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGGY++RE RP++ IL +R++DRSIR LF +N+ V+ V+ D ++ Sbjct: 64 RYYAAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 +++++ AAS AL +S +P+ GPV ++ I+G+ V+NP D + +LDL V+G Sbjct: 124 ANILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHAGG 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 + MVE A ++ E+++++A+ +E K ++ A + +P + + EE+ Sbjct: 184 ITMVEAGAREVPEELLVNALQTAQDEIKKIV-AFQLQVRAEIGQPKAVLPAPLAI--EEI 240 Query: 245 SQMIKEDLR----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + +K++LR + I K R I L +K ++F+ ++ E I E + Sbjct: 241 DRWVKDNLREETAKAVMIHGKKERGAAISALVEKTTAHFADLYADA-ESYIAGAVESLVK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-ED 359 +RT+ K+R DGR ++ +R IS +V +L + HGS+LF RG+TQA+VV TLG ED Sbjct: 300 STMRTITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGED 359 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 +Q +D L + N F++HYNF P + GE+ M P RREIGHG LA RA+ P++P + Sbjct: 360 DQIIDGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEE 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VS+I ES+GSSS A++CG SL++M AGVP+ K VAGIAMGL+K+GDD +IL+D Sbjct: 420 FPYVVRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTD 479 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT G+TA+QMD K GGI+ I+ AL QA + R+ IL+ M Sbjct: 480 IQGLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETC 539 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + E L PR+ M I D+IR+VIG GGKVIR IV+++GAK+N++DDG+V I + Sbjct: 540 IPEP-APLSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAV 598 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S +E AR+MI I E + + G V ++M FGAFV ++GL+HIS++ST+ + Sbjct: 599 SPDSVEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIG 658 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K DV GD V V++ + DD+ +I LS + Sbjct: 659 KVEDVFAPGDHVIVEVKEIDDQNRINLSRR 688 >gi|228477816|ref|ZP_04062444.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius SK126] gi|228250508|gb|EEK09722.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius SK126] Length = 741 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 285/693 (41%), Positives = 431/693 (62%), Gaps = 8/693 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+ +AGRPL +E G++A+Q++GAV+ YG+T VL+T V + + DFFPL VNY+ Sbjct: 4 QTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D + Sbjct: 63 EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183 S + +M +S AL +S +PF GP+ G QV Y +++NP D++ LDL V+GT++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSLLDLTVAGTKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242 A+ MVE A +LSED++L A++ GH + +++ + + KE ++ + L+ Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLKV 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297 E+ + L + + EK R +K+++++ + + + E + + E Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDEDKETILRDVAEILEQ 302 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VR ++ + KVR DGR + +R + A++ L + HGS LF RG TQA+ V+TL Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q VD L + F+ HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK R IL+ + Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L P+++ + IP D+I+ VIG GG+ I I+ +TG ++ID++G V+I S Sbjct: 543 AIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S I A+ +I + +V ++Y VV++ FGAFVH D L+HIS+L+ ER Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALIHISELAWERT 662 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DVVK G TV VK++ D++G+I S+K + Sbjct: 663 EHVEDVVKVGGTVTVKIIKIDEKGRIDASIKAL 695 >gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED Pnpase Length = 559 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 14 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 73 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 74 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 134 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 193 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 194 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 247 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 248 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 307 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 308 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 367 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 368 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 427 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 428 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 487 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 488 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 547 Query: 540 SESR 543 + R Sbjct: 548 NAPR 551 >gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate Length = 549 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESR 543 + R Sbjct: 542 NAPR 545 >gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum BKT015925] gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum BKT015925] Length = 706 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 293/688 (42%), Positives = 436/688 (63%), Gaps = 5/688 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E AGR LK E G++ SD A+ +YG+TVVL V + K+G DFFPL++ YQ Sbjct: 3 HVFETIVAGRKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP++ IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 63 ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P++++M AS AL LS +PF PV V I+G+++ NP + + S LDL V T++ Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESILDLTVCATKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242 V+M+E ++ EDV+ DAI+FG ECK + + K+ + K+ +I + S +E+ Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINSDIEK 242 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 E+ + ++ + +I +K +R K +D++K+K+ FS + + +I +Q +V Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNQEFSERYPD-DLADIGEAIYKMQKQV 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+++L++K R DGR+ + +R +SA+ LL RTHGS LF RG TQ + V TLG+ + Q Sbjct: 302 VRSMILNEKRRPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQV 361 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + +M HYNF + GEV + P+RREIGHG LA +AI P++P +FPY Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480 +R+VSE+ S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV D IL+DI Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G ED G MDFKVAGT+ GITA+Q+D KI G+S + + A+ A+ RL IL ++ + Sbjct: 482 GLEDFFGDMDFKVAGTEEGITAIQVDTKIEGLSNDCIKKAISDARTARLTILKVINDCID 541 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + R ++ ++ P+V M I P +I++VIG GGK I I+++TG K++I +DG V + + Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A EMI + + +IY G+V K+ +FGAFV ++GLVHIS+L +RV K Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKISNFGAFVSILPGKEGLVHISKLDVKRVNKV 661 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD + VK+ + D G+I LS K Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRK 689 >gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC 7002] gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC 7002] Length = 714 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 303/698 (43%), Positives = 432/698 (61%), Gaps = 20/698 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H I + GR ++L+TG A Q+ G+VL G+T VL + + G DF PL V+Y+ Sbjct: 4 HIQSISFDGREIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAPG-RQGIDFLPLLVDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPGGYLRRE RP E LISR+IDR +RPLF + +++ Q++ + D E Sbjct: 63 ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLDEEV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183 P V+++ AS A +L+GLPF GP+ +V + ++LNP E G LDL V+GT D Sbjct: 123 PPDVLAVTGASVATLLAGLPFYGPMAAVRVGLVGDDFILNPTYREMMNGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE ANQL E +++AI F + + +IEA L K M + EP D + Sbjct: 183 GVIMVEAGANQLPEADMIEAIDFAYEAIQELIEAQRALMKELGVEMVSAEPPAKDEELEK 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH----SSWNEGE 290 + + + IK+ L S F +K R +D++K + + + + E + Sbjct: 243 FIGDRTTDKIKKVL--SQFDLDKNGRDAALDEIKATEIIEAIEALPEDAPLRLKTTEEPK 300 Query: 291 IV-SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQA 348 ++ + F+ + K++R+ +++ VR+DGR + VR IS + +L R HGS LF RG TQ Sbjct: 301 LIDNTFKALTKKLMRSQIVEDGVRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQV 360 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + + TLGT D Q +D L + ++ HYNF P + GE M +P RREIGHG LA RA Sbjct: 361 LSIATLGTPGDAQEMDDLHPSDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 420 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K Sbjct: 421 LLPVLPPKDEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIK 480 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G + IL+DI G ED LG MDFKVAGT GITA+QMDMKI G++ ++ A++QA R Sbjct: 481 EGKEVRILTDIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLAVEVVAEAIKQALPAR 540 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL +M+ V++E + +L PR+ + I PD I VIG GGK I+GI EQT AKV+I Sbjct: 541 LHILEKMTDVIAEPK-ELSPAAPRLLTIKIDPDLIGMVIGPGGKTIKGITEQTRAKVDIA 599 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV IASS E A+ +I ++T +Y G+V +++ GAFV ++G++H Sbjct: 600 DDGTVTIASSESENAEKAKRLIVNMTRKLNEGDVYFGKVTRIIQIGAFVEIMPGKEGMIH 659 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 ISQL+ RV K D V GD V VK+ + D++G+I L+ Sbjct: 660 ISQLAEGRVGKVEDEVAVGDEVVVKVREIDNKGRINLT 697 >gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT] gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT] Length = 705 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 290/689 (42%), Positives = 442/689 (64%), Gaps = 7/689 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H E AGR LK E G++ SD A+ +YG+TVVL V K+G DFFPL++ YQ Sbjct: 3 HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YAVGKIPGG+++RE RP++ IL +R IDR +RPLF K Y+N+ QV+ V+ D ++ Sbjct: 63 ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P++++M AS AL LS +PF PV V I+G++++NP + + S LDL V T+D Sbjct: 123 LPNILAMNGASLALCLSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESILDLTVCATKD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241 V+M+E ++ EDV+ DAI+FG ECK + + K+ + K+ +++ D + +E Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQQKVMEQYGKQKAELILHEID-ADIE 241 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +E+ + + ++ + +I +K R K +D++K+K+ F ++ N G+I +Q + Sbjct: 242 KEVREFAFDMVKEAMYITDKDSRNKAMDEVKEKVSEEFDEKYPD-NLGDIGEAIYKMQKE 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR ++L++K R DGR + +R +S++V LL RTHGS LF RG TQ + V TLG+ + Q Sbjct: 301 VVRNMILNEKRRPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQ 360 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + +M HYNF + GEV + P+RREIGHG LA +AI P++P +FPY Sbjct: 361 VLDGIEEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPY 420 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479 +R+VSE+ S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV +D + IL+DI Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSEDLEKEEILTDI 480 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G ED G MDFKVAGT+ GITA+Q+D KI G+S + + A+ A++ RL IL ++ + Sbjct: 481 QGLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCI 540 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R ++ ++ P+V M+I P +I++VIG GGK I I+++TG K++I +DG+V + + Sbjct: 541 DKPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAED 600 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A MI + + ++Y G+V K+ +FGAFV ++GLVHIS+L +RV K Sbjct: 601 YESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNK 660 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DVV GD + VK+ + D G++ LS K Sbjct: 661 VEDVVSVGDEILVKVTEIDSMGRVNLSRK 689 >gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In Complex With Rnase E And Manganese Length = 549 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239 MVE EA LSED +L A++FGH + + VI+ I++L K K EP+ Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 L ++ + + L + I +K R Q+D +K + ++ +E + +E E+ + I+ Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +F Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + + Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 Query: 540 SESR 543 + R Sbjct: 542 NAPR 545 >gi|302387373|ref|YP_003823195.1| polyribonucleotide nucleotidyltransferase [Clostridium saccharolyticum WM1] gi|302198001|gb|ADL05572.1| polyribonucleotide nucleotidyltransferase [Clostridium saccharolyticum WM1] Length = 709 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 288/692 (41%), Positives = 437/692 (63%), Gaps = 19/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA YG+TVVLAT +DG DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D + SP + Sbjct: 67 AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP Q+ ++G+ V+NP + Q S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATCISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H + +I+ I + C K S + EE+ Sbjct: 187 IEAGANEVPEDKMIEAIFKAHEVNQEIIKFIDTIVAECGKPKHGYTS---CAVPEELFAA 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ V+ F EK VR + I ++ K+ F ++ W GE + + Q Sbjct: 244 IKEIVTPEEMEVAVFTDEKQVREENIRNITAKLEEAF-ADKEEWLSVLGEAIYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR + +R ++A++ +L R HGS++F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSES 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D + + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKAAVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A++ ++ RL+IL+E M+ Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRTTRKARLYILDEVMA 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++E R ++G++ P+++ ++I P +I +V+G GKVI I+E+TG K++I DDG V + Sbjct: 540 KAIAEPRKEVGKYAPKIDQISIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGNVSVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+ A ++I+SI E +I+ G+VV++M+FGAFV +DG++HIS+LS +R Sbjct: 600 GTDQTMIDRAIQIIKSIVTEIEAGQIFTGKVVRIMNFGAFVELAPNKDGMIHISKLSEKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 VAK DV+ GD V VK+++ D G+I LSMK Sbjct: 660 VAKVEDVINIGDEVTVKVIEVDKMGRINLSMK 691 >gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814] gi|149752228|gb|EDM62159.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814] Length = 695 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 293/693 (42%), Positives = 428/693 (61%), Gaps = 15/693 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E+E AGRPLK++ GR+A+Q++GAVL YG+T VL T +DG DFFPL+V Y E Sbjct: 4 TFEMELAGRPLKVDVGRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YAVGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + V+ D + + Sbjct: 64 RMYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCA 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +M+ A+ A +S +PF+GP+ QV ++G++V NP + S + L V+ T++ Sbjct: 124 PELTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVFNPTAAQRAVSDMALTVASTREK 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 V+M+E AN++ E ++DAI H + VI I + C K+ +S + EE+ Sbjct: 184 VIMIEAGANEVPEQQMIDAIFAAHELNQKVIAFIDTIVAECGKQKHEYES---CAVPEEL 240 Query: 245 SQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 IK E++ V+ F +K R + I + +K+ F +E+ W +V++ Q Sbjct: 241 FAAIKEIVTPEEMEVAVFSDDKQTREENIRVVTEKLEEAF-AENEEWLAVLPEAVYQ-YQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR+ + +R ++A+V L+ R HGS++F RG TQ + TL + Sbjct: 299 KKTVRKMILKDHKRPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICNICTLAPLSE 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 359 AQKLDGLDEAETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV DD+++L Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKAAVAGISCGLVTGDTDDDYLVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + ++ RL+I++E M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAKTRKARLYIIDEVM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K + R Q+GEF P++ M I P +I +V+G GK I I+EQTG K++I DDG V I Sbjct: 539 NKAIDAPRAQVGEFAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + +E A+++I I E ++ +G+VV + DFGAF+ F ++G+VHIS+LS E Sbjct: 599 CGTDAKSMEEAQKLIHIIVTDFEAGQVLEGKVVSIKDFGAFLEFAPGKEGMVHISKLSKE 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV + DV+ GD V V L D G+I SMK Sbjct: 659 RVNRVEDVLTLGDVVKVVCLGKDKMGRISFSMK 691 >gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] Length = 707 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 295/688 (42%), Positives = 441/688 (64%), Gaps = 13/688 (1%) Query: 10 EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 EW GR L ++ G++A+QS GAVL +G+T VLAT + +G DF PLTV +QE Sbjct: 3 EWRREILGRELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKVIEGIDFVPLTVEFQE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K +NE QVI+ V+ D Sbjct: 63 RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVTVLSADPNVP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P VV + A S AL +S +PFEG V G ++ Y +GQ++ P D ++G +D+ V+GT+DA Sbjct: 123 PDVVGIFAVSLALNVSKIPFEGIVAGIRIGYRDGQFIAFPTEEDIEKGLMDITVAGTKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 V MVE EA ++SE+ ++ A+ F H+ K +++ ++ E I V++ + L E Sbjct: 183 VTMVEGEAKEVSEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPEPPEGLVET 242 Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI----VSVFEDI 298 + ++ +E+L + K R + + ++K++S + S + EI ++E+ Sbjct: 243 FNSLLDREELERRILVKAKKEREAALKEYEEKLLSQTAEALSIVDPEEIKPFVSELYEEA 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R ++++K +R DGR +R IS +VGL RTHGS+LF RG+TQ++ +VTLG Sbjct: 303 VKKTMRRLIVEKGIRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L FM+HYNF P TGEV + PSRREIGHG LA RA+ +LP + Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ES+GSSSMATVC SLALMDAGVPI K VAGIAMGL+ + D +IL+D Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVILTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT GITA QMD K+ G+S+ +++ AL QA+ R++IL++M + Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYET 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597 +S R L + P +++ I PD++ +VIG GG+VI+ I++ KV IDD+ G VK+ Sbjct: 543 ISAPRPHLSRYAPIIKVTKIDPDKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 +S ++ A +IR I EV +I +G++ ++ +G F+ + GL+H S++ E + Sbjct: 603 NSEENVDNAIALIREIAKEIEVGEILEGKITRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + VK GDT+ V++++ DD G+++ Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQF 689 >gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila RKU-1] gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila RKU-1] Length = 708 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 298/697 (42%), Positives = 445/697 (63%), Gaps = 13/697 (1%) Query: 10 EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 EW GR L ++ G++A+QS G+ L +G+TVVLAT +G DF PLTV +QE Sbjct: 3 EWRRNILGRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K +NE QVI+ V+ D Sbjct: 63 RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P VV + AAS AL +S +PFEG V G +V Y +GQ++ P D ++G +D+ V+GT+DA Sbjct: 123 PDVVGIFAASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 V MVE EA +++E+ ++ A+ F H+ K +++ ++ E I V++ L E Sbjct: 183 VTMVEGEAKEVAEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEA 242 Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EG---EIVSVFEDI 298 ++ KE+L + K R + + ++++++ + + S + EG + ++ED Sbjct: 243 FKDLLNKEELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDA 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R ++++K +R DGR +R IS +VGL RTHGS+LF RG+TQ++ +VTLG Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L FM+HYNF P TGEV + PSRREIGHG LA RA+ +LP + Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ES+GSSSMATVC SLALMDAGVPI K VAGIAMGL+ + D IIL+D Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT GITA QMD K+ G+S+ +++ AL QA+ R++IL+ M + Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597 +S R L ++ P +++ + P+++ +VIG GG+VI+ I++ KV IDD+ G VK+ Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS ++ A E+IR I EV ++ +G+V ++ +G F+ + GL+H S++ E + Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 + VK GDT+ V++++ DD G+++ +NT Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698 >gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39] gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39] Length = 715 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 298/702 (42%), Positives = 449/702 (63%), Gaps = 25/702 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G+T++LATVV K G DF PL+V+YQE+ A G+ Sbjct: 13 GRTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLSVDYQEKYAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I ++ D P ++ + Sbjct: 73 IPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMITLISSDKNIMPDCLAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+GQ+V+NP + D ++ +++ V+GT++ ++MVE E Sbjct: 133 AASAAIAVSDIPFNGPISEVRVAKIDGQFVINPYVSDLERATMEFLVAGTENDIVMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 A+++SE +++AI F H ++A +LA++ K + + +S E+ + +KE Sbjct: 193 ADEISESDMVEAIEFAHKAIVVQVQAQKELAQLVGK----TEKRAYS--HEDSNPELKEK 246 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIV---------SVFEDIQA 300 + + + +K + + K + F + + GE + F D+Q Sbjct: 247 VYAATY--DKVYAIAKSNTSKGERGDAFGAVLMDFIATLGEDIDDVTGFLSKKYFHDVQY 304 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++LD+ +R+DGRD TVR I ++VG L HGS++F RG+TQ++ VTLG+++DE Sbjct: 305 DAIRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGSKDDE 364 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D N F++HYNF +TGEV RREIGHG LA R++ VLP + P Sbjct: 365 QMIDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGIEENP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478 YT+RIVS+I ES+GSSSMATVC +LALMDAG+ I PV+GIAMGL+ D + ILSD Sbjct: 425 YTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYAILSD 484 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKV GT+ GI A QMD+KI G+ ++ AL QAK RLHILNEM K Sbjct: 485 ILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKKT 544 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKI 595 ++ R + PR+ ++I + I VIG GGK+I+ + +TGA ++I+ + G V++ Sbjct: 545 IAAPREDYKDHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGASISIEEVGNKGIVEV 604 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + A I+AA I +I PE+ IY G+V +M FGAFV +DGL+HIS++ Sbjct: 605 FADNKASIDAAVARINAIAAKPEIGAIYDGKVKSIMPFGAFVEIMPGKDGLLHISEIDWT 664 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 R+ V KEGD + VKLLD D +GK+KLS KV+ KP Sbjct: 665 RLETMDGVFKEGDKLQVKLLDIDKQGKMKLSRKVLLPRPPKP 706 Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 44/226 (19%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY---------DRSLKDG 53 DV TV RP+ E G + + G+ + T GET L TV D + +G Sbjct: 322 DVRTV------RPIWSEVGYLP-SAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFING 374 Query: 54 QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKN 109 + F L N+ G+ E RP EI + RS++ + +N Sbjct: 375 YNKFLLHYNFP-----------GFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGIEEN 423 Query: 110 ETQVIINVMQHDLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVL 163 I ++ LES S + ++ A + ALM +G+ + PV G + I G+Y + Sbjct: 424 --PYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYAI 481 Query: 164 NPRL--DEDQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAI 204 + DED G +D V+GT+ ++ ++L+ N L +V+ +A+ Sbjct: 482 LSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNAL 527 >gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505] Length = 718 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 296/694 (42%), Positives = 437/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEA-REGVDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ Q+I + D P V Sbjct: 67 AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A I++L + +EP + D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVHQEPPIPDQSLENYIRD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-------EHSSWNEGEIV-SV 294 S+ IK+ L + F K R +D +K + S S ++ G+++ + Sbjct: 247 RASEEIKKIL--AQFELTKTERDAALDVVKSAIASSIESLGEEDPIRIAATANGQVLENT 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+DI +R +++ VR+DGR + VR +S+QVG+L +R HGS LF RG TQ + T Sbjct: 305 FKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVLSACT 364 Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT D Q + D L Q ++ HYNF P + GE + AP RREIGHG LA RAI PV Sbjct: 365 LGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP QFPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G + Sbjct: 425 LPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ A++QA+ RLHIL Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAVEQARDARLHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M + + + R + F PR+ + I PD I VIG GGK I+GI E+TGAK++I+D G Sbjct: 545 EKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDSGI 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I++ + A+ +I+ +T +Y G+V +++ GAFV F ++G++HISQL Sbjct: 605 VTISAIDEGRAKRAKSIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHISQL 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D V G+ V VK+ + D +G+I L+ Sbjct: 665 ADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLT 698 >gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima MSB8] gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8] gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] Length = 708 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 298/697 (42%), Positives = 445/697 (63%), Gaps = 13/697 (1%) Query: 10 EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 EW GR L ++ G++A+QS G+ L +G+TVVLAT +G DF PLTV +QE Sbjct: 3 EWRRNILGRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K +NE QVI+ V+ D Sbjct: 63 RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184 P VV + AAS AL +S +PFEG V G +V Y +GQ++ P D ++G +D+ V+GT+DA Sbjct: 123 PDVVGIFAASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 V MVE EA +++E+ ++ A+ F H+ K +++ ++ E I V++ L E Sbjct: 183 VTMVEGEAKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEA 242 Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EG---EIVSVFEDI 298 ++ KE+L + K R + + ++++++ + + S + EG + ++ED Sbjct: 243 FKDLLNKEELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDA 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R ++++K +R DGR +R IS +VGL RTHGS+LF RG+TQ++ +VTLG Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D+L FM+HYNF P TGEV + PSRREIGHG LA RA+ +LP + Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ES+GSSSMATVC SLALMDAGVPI K VAGIAMGL+ + D IIL+D Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT GITA QMD K+ G+S+ +++ AL QA+ R++IL+ M + Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597 +S R L ++ P +++ + P+++ +VIG GG+VI+ I++ KV IDD+ G VK+ Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 SS ++ A E+IR I EV ++ +G+V ++ +G F+ + GL+H S++ E + Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 + VK GDT+ V++++ DD G+++ +NT Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698 >gi|284929051|ref|YP_003421573.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A] gi|284809510|gb|ADB95215.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A] Length = 715 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 293/711 (41%), Positives = 433/711 (60%), Gaps = 52/711 (7%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GA+L G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSKG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E LISR+IDR +RPLF ++N+ Q+I + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++ + +PF GP+ +V + +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASIAVIQAQIPFFGPMAAVRVGLVGDDFIINPTYREVEDGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E ANQL E V++AI FG+ + +I A ++ +EE + Sbjct: 187 IEAGANQLPEQDVIEAIDFGYEAVRDLIGAQQEI------------------MEELGISL 228 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-------------------------FSSE 282 +K D V + EK++ + + +KK +V Y S E Sbjct: 229 VKADPPVKNEVLEKFISDQSSESIKKVLVQYNLGKAERDIALDEIKETTINEIITNLSEE 288 Query: 283 HS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTH 336 S + + ++++ + K++R+ ++D ++R+DGR + VR I+ VG+L R H Sbjct: 289 DSIKIAAKEDPKAVNNLYKGLTKKLMRSQIVDNEIRVDGRKLDEVRPITCDVGILPPRVH 348 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 G LF RG TQ + + TLGT D Q + D L ++ HYNF P + E M +P Sbjct: 349 GCGLFNRGLTQVLSLATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPYSVAETKPMRSPG 408 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PVLPQ +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI Sbjct: 409 RREIGHGALAERALLPVLPQQEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPI 468 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 +KPV+G AMGL+K+G++ IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S + Sbjct: 469 AKPVSGAAMGLIKEGEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMD 528 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ A++QA RLHIL +M + + R +L F PR+ M I P+ I +IG GGK I+ Sbjct: 529 VIAKAIEQALPARLHILEKMLSTIDKPRSELSTFAPRLLTMKIDPEMIGLIIGPGGKTIK 588 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635 GI EQTG+K++I DDG V IA+ + E A+ +I ++T ++Y G+V +++ GA Sbjct: 589 GITEQTGSKIDISDDGMVTIAAIQAKKAEKAKSIIFNMTRKLNEGEVYLGRVTRLIPIGA 648 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FV ++G++HISQL+ RV K D V GD V VK+ + D++G++ L+ Sbjct: 649 FVEVLPGKEGMIHISQLAERRVGKVEDEVAVGDEVVVKVREIDNKGRLNLT 699 >gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. JA-3-3Ab] gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. JA-3-3Ab] Length = 712 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 292/694 (42%), Positives = 437/694 (62%), Gaps = 14/694 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +T I + GR + + G +A Q+ V T GET VL T ++ + G DF PL V+Y+ Sbjct: 4 YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSVLVTATR-QAGRAGVDFLPLLVDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPGGYLRRE RP E LISR+IDR +RPLF + +++ Q++ + D + Sbjct: 63 ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+ ++ AS A+ + +PF GPV +V + ++++NP E + G LDL V+G D Sbjct: 123 PPDVLCILGASLAIHSARIPFNGPVAAVRVGLVKDEFIINPTYAEIEAGDLDLVVAGCAD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 V+MVE ANQL E V++AI FG + +++A ++ P+ + ++ L Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAVQELLKAQQQVFADLNITPVELPPPPQNEELVA 242 Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIV 292 +++ +E++R + F+ +K R +Q++ +K K+ + + N E+ Sbjct: 243 FVAEHAQEEIRSVLRQFL-DKTSREQQLEAIKAKLEAQIQARPEGDPLRLYLLENPKELD 301 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + F+ + K++R +L + VR+DGR + VR +S +VGL+ R HGS+LF RG TQ + + Sbjct: 302 NQFKALTKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSIT 361 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L +M HYNF + GEV +P RREIGHG LA RA+ PV Sbjct: 362 TLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGEVRPSRSPGRREIGHGALAERALVPV 421 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP+ +FPY +R+VSE+ S+GS+SMA+VCGS+L+LMDAGVPI PV+G+AMGL+K+GD+ Sbjct: 422 LPKEEEFPYVVRVVSEVLSSNGSTSMASVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGDE 481 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++ AL QAK GR +IL Sbjct: 482 VRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEKALLQAKAGRDYIL 541 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M +VL R QL + PR+ + P+ I +IG GGK++R I E TGAKV+I DDGT Sbjct: 542 DKMLEVLPAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKMVRSITEATGAKVDISDDGT 601 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + ++SS + EAAR MI ++ E ++Y G+V +++ GAFV F ++G++HISQL Sbjct: 602 ITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHISQL 661 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV++ D + D V VK+ D +G++ L+ Sbjct: 662 AEYRVSRVEDEIAVADEVVVKVRSIDHKGRVNLT 695 >gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus PCC 7942] gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus PCC 7942] Length = 716 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 291/698 (41%), Positives = 427/698 (61%), Gaps = 18/698 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + + GR ++LE G A Q+ G+VL + G+T VL + ++G DF PLTV+Y+ER Y Sbjct: 8 LSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEERMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E L SR+IDR +RPLF +++ QV+ + D P V Sbjct: 67 AAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E ++G LDL V+GT V+M Sbjct: 127 LAVTGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM--- 244 VE ANQL E V++AI FG+ + +I+A L E I+ ++ + E Sbjct: 187 VEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENFVRD 246 Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294 S +++ L+ F K R +D++K +V ++ ++ + + Sbjct: 247 RASSGVQQVLQHFSFT--KSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGNT 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353 F+ + ++R +L VR+DGR + VR IS+QVGLL R HGS LF RG TQ + + T Sbjct: 305 FKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIAT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D L + ++ HYN P + GE M +P RREIGHG LA RA+ PVL Sbjct: 365 LGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD++ Sbjct: 425 PSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDEY 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ I+ A+ QAK RLHILN Sbjct: 485 RVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHILN 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + ++ R L + PR+ + I P+QI VIG GGK IR I EQTGAK++I+D G V Sbjct: 545 KMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGAV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I++ A+ +I +T +Y G+V +++ GAFV F ++G++HISQ++ Sbjct: 605 TISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIA 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 RVA+ D + GD V VK+ + D +G++ L+ K +D Sbjct: 665 DYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGID 702 >gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L] gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L] Length = 716 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 293/696 (42%), Positives = 432/696 (62%), Gaps = 23/696 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A QS G+V+ G+T VL T ++G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAPG-REGIDFLPLVVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E IL SR+IDR +RPLF +++ Q++ + D + P V Sbjct: 67 AAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++ +PF GP+ +V + +++NP E + G LDL V+G+ V+M Sbjct: 127 LAVTGASIAVLQGSIPFYGPMAAVRVGLLGDDFMINPTYKEIENGDLDLVVAGSPQGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A L + + EP +DS LEE Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVQDLIKAQHDLLEELGIAIVIGEPPAVDSN----LEE 242 Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEI 291 + + ++ +S F +K R +D++K V ++ + N + Sbjct: 243 FIRVRATDKIKGVLSQFDLDKNGRDVALDEIKDSAVKAEITQLKEDDPIRVAVNENSALV 302 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIV 350 +F+ + K++RT ++++ VR+DGR + VR +S Q LL QR HGS+LF RG TQ + Sbjct: 303 DKLFKSLTKKLMRTQIVEEGVRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLS 362 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 VTLGT D Q +D L+ ++ HYNF P + GEV + +P RREIGHG LA RA+ Sbjct: 363 TVTLGTPGDAQTLDDLNPEDEKRYLHHYNFPPFSVGEVKPLRSPGRREIGHGALAERALV 422 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMD+GVPI+KPV+G AMGL+K+G Sbjct: 423 PVLPPQHEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDSGVPITKPVSGAAMGLIKEG 482 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D+ IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S + + A++QAK RLH Sbjct: 483 DEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDTIAQAIEQAKPARLH 542 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL +M V+ + F PR+ M I P+ I VIG GGK I+GI EQTGAK++I+DD Sbjct: 543 ILEKMLAVIDTPSTDMSPFAPRLLTMKIDPEFIGTVIGPGGKTIKGITEQTGAKIDIEDD 602 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 GTV +++ A +I+ +T +Y G+V +++ GAFV ++G++HIS Sbjct: 603 GTVTVSAMDGDRATKAINIIQGLTRKLHEGDVYVGRVTRIIPIGAFVEILPGKEGMIHIS 662 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 QL+ RV K D + GD V VK+ + D++G++ L+ Sbjct: 663 QLADYRVGKVEDELAVGDEVVVKIREIDNKGRLNLT 698 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVD 364 V +DK + DGRD I +VGLL G S+ I+ GDT +V T Sbjct: 2 VEIDKSISFDGRD------IRLKVGLLAPQSGGSVMIQSGDTAVLVTAT----------- 44 Query: 365 SLSGTQRNDFM---MHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQT 416 G + DF+ + Y A G + R G P + I RL R + P+ P Sbjct: 45 RAPGREGIDFLPLVVDYEERLYAAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLFPSW 104 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 + + + + + V G+S+A++ +P P+A + +GL+ GDDF+I Sbjct: 105 LRDDIQIVATTLSMDEQVPPDVLAVTGASIAVLQGSIPFYGPMAAVRVGLL--GDDFMI- 161 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ 504 + + E G +D VAG+ G+ ++ Sbjct: 162 -NPTYKEIENGDLDLVVAGSPQGVIMVE 188 >gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus PCC 6301] gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus PCC 6301] Length = 716 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 291/698 (41%), Positives = 426/698 (61%), Gaps = 18/698 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + + GR ++LE G A Q+ G+VL + G+T VL + ++G DF PLTV+Y+ER Y Sbjct: 8 LSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEERMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E L SR+IDR +RPLF +++ QV+ + D P V Sbjct: 67 AAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++ AS A +++ +PF GP+ +V + +++NP E ++G LDL V+GT V+M Sbjct: 127 LAATGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM--- 244 VE ANQL E V++AI FG+ + +I+A L E I+ ++ + E Sbjct: 187 VEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENFVRD 246 Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294 S +++ L+ F K R +D++K +V ++ ++ + + Sbjct: 247 RASSGVQQVLQHFSFT--KSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGNT 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353 F+ + ++R +L VR+DGR + VR IS+QVGLL R HGS LF RG TQ + + T Sbjct: 305 FKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIAT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D L + ++ HYN P + GE M +P RREIGHG LA RA+ PVL Sbjct: 365 LGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD++ Sbjct: 425 PSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDEY 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ I+ A+ QAK RLHILN Sbjct: 485 RVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHILN 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + ++ R L + PR+ + I P+QI VIG GGK IR I EQTGAK++I+D G V Sbjct: 545 KMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGAV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I++ A+ +I +T +Y G+V +++ GAFV F ++G++HISQ++ Sbjct: 605 TISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIA 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 RVA+ D + GD V VK+ + D +G++ L+ K +D Sbjct: 665 DYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGID 702 >gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13] Length = 706 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 286/698 (40%), Positives = 434/698 (62%), Gaps = 16/698 (2%) Query: 1 MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF+ + V + +AGR L +ETG+ ++G+ YG +VV+A V ++G DFFPL Sbjct: 1 MFENYKVFKTMFAGRELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+Y+ER YAVGKIPG +++RE +P+E IL SRM+DR IRPLF K +N+ V++ V+ Sbjct: 61 SVDYEERLYAVGKIPGSFMKREGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLA 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D + SP ++ M+A S A+ +S +P+ GP+ G V ++G+ VLNP L++ + L+L V Sbjct: 121 VDPDHSPEIMGMIATSIAISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRNDLNLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVID 233 +GT ++M+E ANQ+ E ++ AI+ G E + ++ I + K K E + +D Sbjct: 181 AGTDKKIVMIEAGANQVDEATMMQAILAGQAENEKMVAFIKDIQKQIGKPKFTFESMEVD 240 Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 F ++ S +K L + +K +R ++++ +K + F ++ I Sbjct: 241 HDLFDAIDAFASDRVKFALDTN----DKNIREERLNPIKNDIHEKFDPDYPE-QIAMIDE 295 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 +Q K+VR + + K R+DGR + +R ++A+VG+L R HGS LF RG TQ + V T Sbjct: 296 CIYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVAT 354 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D Q +D + +M HYNF + GE P RREIGHG LA RA+ PV+ Sbjct: 355 LGPVSDAQRIDGIDEDVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALEPVI 414 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471 P +FPY LR+VSE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL+ D D Sbjct: 415 PPVEEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSD 474 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 +F+ + DI G ED G MDFKV GT GITA+Q+D+K+ G++ I+ AL++ ++ R++I Sbjct: 475 EFMTMVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIEEALEKTRKARIYI 534 Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 L+E M K + R + EF P++ IP D+IR VIG GGKVI+ I + K+++++D Sbjct: 535 LDEIMLKAIPHYRSSVNEFAPKMMQTKIPVDKIREVIGQGGKVIQKISAECEVKIDVNED 594 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G+V I+ L + + A +++ +I PEV IYKG+VV++M FGAFV +DGLVHIS Sbjct: 595 GSVFISGVDLEKTKKALQIVETIAHDPEVGAIYKGKVVRLMSFGAFVEIAPGKDGLVHIS 654 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +L +RV K DVV GD + VK+++ D +G+I LS K Sbjct: 655 KLDKDRVEKVEDVVSIGDEIVVKVVEIDKQGRINLSRK 692 >gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] Length = 759 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 284/694 (40%), Positives = 435/694 (62%), Gaps = 22/694 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E +AGRP +ETG++ ++G+ + YG+T VL V ++G DFFPL+V ++E+ Sbjct: 60 ETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEEKL 119 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG ++RRE RP E+ IL SR++DR IRPLF K +N+ V + VM D ++S Sbjct: 120 YAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAE 179 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + M AS A+ +S +P+ GP+ G V ++G+ VLNP ++ + S L L ++ +++ ++ Sbjct: 180 ITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAASEEKIV 239 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +++AI GH E K ++ I+ + K K F+ +E + Sbjct: 240 MIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKP-----KKTFTPVELDHGL 294 Query: 247 MIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + ++++ + +K VR D ++ ++EH +I + +Q Sbjct: 295 LADVYAKHLDEVKAAMDTDDKNVR----DAALLPIMDAIAAEHPELTAADIDLISYKLQK 350 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVRT +L+ R+DGR +R ++A+VGLL R HGS +F RG TQ + V TLG+ +D Sbjct: 351 KVVRTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDA 410 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D LS TQ ++ HYNF P + GE +P RREIGHG LA RA+ PVLP ++FP Sbjct: 411 QLMDDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEFP 470 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-----FII 475 YT+R VSE+ S+GS+S A++CGS+LALMDAGVPI PVAGI+ GL+ DGD ++ Sbjct: 471 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWMT 530 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 + DI G ED G MDFKV GT GITA+QMD+K+ G++ I+ AL++ ++GRL+IL+E+ Sbjct: 531 MLDIQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDEI 590 Query: 536 SK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 K V++E R +L + P++ M IP D+I++VIG GGKVI+ + K++I++DG V Sbjct: 591 IKPVIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHVF 650 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I++ + + A I++I + PE+ IYKG+V ++M+FGAFV ++GLVHIS+L Sbjct: 651 ISAVDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLDD 710 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 RV DVV GD ++V + D D +G+I LS K Sbjct: 711 HRVEHVEDVVAVGDPIFVMVTDIDQQGRINLSRK 744 >gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima CS-328] gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima CS-328] Length = 720 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 299/698 (42%), Positives = 431/698 (61%), Gaps = 27/698 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GA+L G+T VL T + G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP + L SR+IDR +RPL +++ Q++ + D + P V Sbjct: 67 AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + +++NP E G LDL V+G+ V+M Sbjct: 127 LAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEE 242 VE AN+L E V++AI FG+ +I+A +++ + E + D ++E Sbjct: 187 VEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELGIENPIEEPPPEDPTLIEFIQE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-------------SYFSSEHSSWNEG 289 +++ +K+ L F K R +D +K++ + S F++E N Sbjct: 247 RVTEPVKKVL--GQFELTKDERDAALDVIKEEQIVSAIALMPEDDPISLFNTE----NPK 300 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348 + +F+DI K++R +L + VR+DGR+ + VR +S +VGLL +R HGS LF RG TQ Sbjct: 301 AVGMIFKDITKKLMRQQILSEGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQV 360 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + + TLGT D Q +D L +M HYNF P + GE M +P RREIGHG LA RA Sbjct: 361 LSIATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 420 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP QFPY +RIVSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K Sbjct: 421 LLPVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIK 480 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G + IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++ A+ +AK R Sbjct: 481 EGSEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPAR 540 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL +M +VL + R L F PR+ + I PD I VIG GGK I+GI E+TG K++ID Sbjct: 541 LHILEKMLEVLPKHRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDID 600 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDGTV IAS+ A ++++ +T +Y G+V +++ GAFV ++G++H Sbjct: 601 DDGTVTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIH 660 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 ISQL+ RV K D V GD V VK+ + D +G+I L+ Sbjct: 661 ISQLAEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLT 698 >gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] Length = 732 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 297/700 (42%), Positives = 444/700 (63%), Gaps = 21/700 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G+T++LATVV ++ ++G DF PL+V+YQE+ A G+ Sbjct: 15 GRIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSVDYQEKYAASGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y ETQV+I+++ D P ++ + Sbjct: 75 IPGGFLRREARLSDYEVLISRLVDRALRPLFPEDYHAETQVMISLISSDENIMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+GQ V+NP R D ++ +L+ V+G++ + MVE E Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTDLERATLEFIVAGSEKDINMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +N++ E +++AI F H K + +L K + S LE +K+ Sbjct: 195 SNEIQEAELVEAIQFAHEAIKKQVAVQKELTVATGKTEKRTYCHENSDLE------LKDK 248 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV----SVFEDIQAKV 302 + + + I + + + D + S F + E +V F D+Q Sbjct: 249 VYAATYDKVYAIAKAQLPKHERSDAFATIYSEFEATLGENPEESVVFLAKQYFHDVQYDA 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L++ VR+DGR+S+ +R I ++V L HGSS+F RG+TQ++ VTLG+ +DEQ Sbjct: 309 VRNLLLNENVRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQM 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + N FM+HYNF +TGE RRE+GHG LA RAI VLP + PY Sbjct: 369 IDGAFISGYNRFMLHYNFPAFSTGEARPNRGVGRREVGHGNLAMRAIKKVLPPDNENPYV 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480 +R+VS+I ES+GSSSMATVC +LAL+DAG+ IS PV+GIAMGL+ D + ILSDI Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALLDAGIKISSPVSGIAMGLISDEKTGKYAILSDIL 488 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT +GITA QMD+K+ G+S +++ AL QAK GRLHIL EM+K +S Sbjct: 489 GDEDHLGDMDFKVTGTKNGITACQMDLKVNGLSYDVLTEALNQAKEGRLHILGEMAKTIS 548 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597 E R PR+ + I + I VIG GGK+I+ + +TGA ++I D+ G V++ + Sbjct: 549 EPREDYKPHAPRIVSLTIDKEFIGAVIGPGGKIIQEMQRETGATISIEEKDNKGLVQVFA 608 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++ +++A I++I PEV +IY+G+V +M FGAFV +DGL+HIS++ +R Sbjct: 609 NNKESVDSAVARIKAIAAKPEVGEIYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 + K GD V VKLLD D +GK+KLS K + KP Sbjct: 669 ESMDGLFKVGDEVRVKLLDVDKQGKLKLSRKALLPRPPKP 708 >gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] Length = 751 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 304/708 (42%), Positives = 452/708 (63%), Gaps = 38/708 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G T++LATVV ++ G DF PLTV+Y+E+ YA G+ Sbjct: 16 GREITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANPGVDFLPLTVDYREKFYAGGR 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE++P+++E+L R++DR +RPLF + + E QV+I+++ +D E P ++ + Sbjct: 76 IPGNFFRREAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMISLISYDKEVMPEALAGL 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ ++ +PF GP+ A+V I+G+ +NP + + +D+ V T+D+++MVE E Sbjct: 136 AASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYENLLKSDIDIMVGATKDSIVMVEGE 195 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQMI 248 ++SE +L+AI F H E + IEA +LA K F K E EE + I Sbjct: 196 MKEISEQEMLEAINFAHAEIRKQIEAQERLAAKVGKA--------FPKREYNHEEHDEEI 247 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLK-------KKMVSYFSSEHSSWNEGEIVSV------- 294 +E + C+ +K + K K ++ F ++++ NE E+ V Sbjct: 248 REKVWKECY--DKVYEVAKTPSNKEERGEKFKAVLEEFLAQYAD-NEEELARVTPFVKVY 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + D++ + +R ++L+ +R+DGRD +T+R I +++ L HGS++F RG+TQ++ VTL Sbjct: 305 YHDVEKEAMRQMILEDNIRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTL 364 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G+ +D +DS+ F +HYNF P +TGE + SRRE+GHG LA+RA+ V+P Sbjct: 365 GSVKDANMIDSVITQHDERFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALTAVIP 424 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDD 472 A+ PYT+RIVS+I ES+GSSSMATVC +LALMDAGV I+KPV+GIAMGL+ D Sbjct: 425 --AENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLITDTKSGK 482 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +LSDI GDEDHLG MDFKV GT GITA QMD+KI G+S +IM AL QAK GRLHIL Sbjct: 483 FTVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMEKALMQAKDGRLHIL 542 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 N++++ +S+ R + P++ +M IP D I VIG GGK+I+ + + T + I++ G Sbjct: 543 NKITETISQPRADVKPHAPKMVVMEIPKDFIGAVIGPGGKIIQQLQKDTDTVIAIEEIGE 602 Query: 593 ---VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 ++IA + +I AA I IT VP V ++YKG+VVKVMDFGAFV +GL+HI Sbjct: 603 IGRIEIAGTDREKINAAIAKINEITFVPVVGEVYKGKVVKVMDFGAFVAIAKGTEGLLHI 662 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 S++ R+ K EGD V VK + +DDR K+KLS KV+ KP Sbjct: 663 SEIEWARLDKVP--YAEGDEVEVKFMGYDDRKKMKLSRKVLLPRPPKP 708 >gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii L2-63] Length = 739 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 283/701 (40%), Positives = 435/701 (62%), Gaps = 18/701 (2%) Query: 2 FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 FD + V E E+AGRPLK+ETG++ + ++GA L YG+T V V ++G DFFPL+ Sbjct: 7 FDKYRVFETEFAGRPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLS 66 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ YAVGKIPG YL+RE RP+E IL SR+IDR IRPLF K +N+ ++ VM Sbjct: 67 VDYEEKMYAVGKIPGSYLKREGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSV 126 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + P +V+M+ AS A+ +S +P+ GP+ G V I+G+Y++NP ++ + S + V+ Sbjct: 127 DPDCQPEIVAMIGASIAISISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQMATTVA 186 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T + M+E AN +S+D + +AI+ GH + +I I ++ K +F+ Sbjct: 187 STSTRIAMIEAGANCVSDDDMYNAIMAGHEANQKIISFIEEIKAEIGKPKF-----EFAS 241 Query: 240 LE------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 LE E + +ED++V+ +K +R +++ + + + + F + +E I Sbjct: 242 LEPDHDMFEAIKAFAEEDVKVALDTDDKRIRDERLKPIYEAVHAKFDEIYPE-SEALIDE 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 Q +VR +LD++ R+DGR + +R ++++VG++ R HGS +F RG TQ + + T Sbjct: 301 CLYKTQKFIVRRWLLDEQKRVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIAT 360 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LG D+Q +D + G ++ HYNF + GE P RREIGHG LA RA+ PV+ Sbjct: 361 LGPVSDKQLLDGIDGETEKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVI 420 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPY LR+VSE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL+ +GD + Sbjct: 421 PSVEEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRW 480 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 + + DI G ED G MDFKVAGT GITA+QMD+KI G++ ++ AL + + R +IL+ Sbjct: 481 MTMVDIQGLEDFFGDMDFKVAGTHDGITAIQMDLKISGLTPEMVKEALAKTHKARNYILD 540 Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590 E M K ++E R +L ++ P++ IP D+I VIG GKVI+ I + KV+I++D Sbjct: 541 EVMLKAIAEPREELSKYAPKMFTTTIPADKISEVIGKSGKVIKEIQAECEVKVDIEEDGE 600 Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V ++ + + A E+I +I PE +Y G+V ++MDFGAFV ++GLVHI Sbjct: 601 LGQVFVSGIDSDKCKRAIEIINTIAVDPEPGAMYLGKVTRIMDFGAFVEIAPGKEGLVHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SQL +R +DVV GD + VK+++ DD+G++ LS + V Sbjct: 661 SQLDVKRTENVTDVVNVGDIIRVKVMEIDDKGRLNLSRRQV 701 >gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 722 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 294/688 (42%), Positives = 437/688 (63%), Gaps = 10/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AG LK+ G++A Q++G L YG+TVVL T + ++G DFFPL+V+Y+E+ Y Sbjct: 7 MELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E L +R+IDR +RPLF + Y+N+ Q++ V+ D + P + Sbjct: 67 AVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL LS +PF+GP QV ++G+YV+NP ++ ++ ++L +SGT A++M Sbjct: 127 PAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSSAIMM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE AN +SE+ +L+AI+ GH K + I + KE K ++E+ Sbjct: 187 VEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEK---SKYILFKPDQEIVDK 243 Query: 248 IKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 +K+ D+ V+ +K +R K D K ++ +F + N ++ + E+I+ V Sbjct: 244 VKDFGTDILVNAIRQKDKVLREKLTDQAKDEIRQHFE-DLMEENSKDVEAAIEEIEVTEV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++++ R DGR E +R +S++VGLL R HGS LF RG TQ + V LG +EQ + Sbjct: 303 RRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTI 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + ++ HYNF + G+ +P RREIGHG LA RA+ PV+P +FPYT+ Sbjct: 363 DGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYTI 422 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ S+GSSS A+VCGS+L+LMDAGVPI PVAGIAMGL+++ IL+DI G E Sbjct: 423 RVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGLE 482 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+K+ GI + I+ +AL++AK RL IL+ + + + R Sbjct: 483 DHFGDMDFKVAGTSEGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKPR 542 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L ++ P + I+ I P++I +VIG GGK I I+EQTG K++IDDDG V + S + Sbjct: 543 DHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEKA 602 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A +I SI EV Y G+V K+M FGAFV +GL+HIS+++ ER + DV Sbjct: 603 KEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGDV 662 Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 + GD V VK+++ +D GKI LS KV+ Sbjct: 663 LHVGDQVKVKVIEINDENGKISLSRKVL 690 >gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae TMO] gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae TMO] Length = 710 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 296/686 (43%), Positives = 439/686 (63%), Gaps = 17/686 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E GR +E G++A+Q++GAV+A G+T VLAT V S +G DF PLTV +QER YA Sbjct: 7 EILGREFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEFQERFYA 66 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE +P+E IL +R IDR IRPLF K +NE QV++ V+ D ++P +V Sbjct: 67 AGKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPDIV 126 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMV 188 + AAS AL +S +PF G V +V ++G+ VL P D+ Q SL D+ V+GT+D + MV Sbjct: 127 GVFAASLALNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTEDTITMV 186 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247 E EA ++SE +L A++ H+ K +I+ ++ E I K ++E+E SQ+ Sbjct: 187 EGEAKEVSESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIEKEFSQL 246 Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303 + +LR I K R + + KK+ + + + E+ + +D + + Sbjct: 247 LDGNELRERLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYEEALKYK 306 Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R +++++ R+D R + +R I+ + GLL R HGS+LF RG+TQ++ +VTLG DEQ Sbjct: 307 MRRIIVEEGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQI 366 Query: 363 VDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +DSL GT+R FM+HYNF P +TGEV + PSRREIGHG LA RA+ VLP +FP Sbjct: 367 IDSLLEEGTKR--FMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDEDRFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RIVSEI ES+GSSSMATVC SLALMDAGVPISK VAG+AMGL+ + D I+L+DI Sbjct: 425 YTIRIVSEILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVLTDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA QMD K+ G+S +++ AL QAK RL++L ++ + +S Sbjct: 485 GAEDHWGDMDFKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLYETIS 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASSS 599 + R L ++ P +++++I P ++ +IG GGK+I+ +++ K+++DD G V + + Sbjct: 545 KPRDTLSKYAPVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSVIGGN 604 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +++AA E I SI V ++ G+V ++ FG FV + GL+H S+L T+ K Sbjct: 605 EEKVDAAIEQINSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKLITD--LK 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKL 685 T VK G+T+ VK+ + D+ G+++L Sbjct: 663 T---VKIGETMRVKVSNIDNLGRLQL 685 >gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM 2366] gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM 2366] Length = 716 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 297/700 (42%), Positives = 447/700 (63%), Gaps = 21/700 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DGAV+ G+T++LATVV K G DF PL+V+YQE+ A G+ Sbjct: 13 GRTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLSVDYQEKYAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I+++ D P ++ + Sbjct: 73 IPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMISLISSDKNIMPDCLAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+G++V+NP + D ++ ++ V+GT+ ++MVE E Sbjct: 133 AASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERADIEFLVAGTEKDIVMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++SE +++AI F H ++A +LA++ K +++S E+ + +KE Sbjct: 193 CNEISETEMVEAIEFAHKAIVIQVQAQKELAELVGKTV----KREYS--HEDSNPELKEQ 246 Query: 252 L------RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS-VFEDIQAKV 302 + +V + ++ D + ++ + ++ ++ G + F D+Q Sbjct: 247 VYAATYDKVYAIAKSNTSKGERGDAFGQVLMDFIATLGEEIDDVTGFLAKKYFHDVQYDA 306 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R ++LD+ +R+DGRD TVR I ++VG L HGS++F RG+TQ++ VTLG+++DEQ Sbjct: 307 IRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGSKDDEQM 366 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D N F++HYNF +TGEV RREIGHG LA R++ VLP + PYT Sbjct: 367 IDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGLEENPYT 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480 +RIVS+I ES+GSSSMATVC +LALMDAGV I PV+GIAMGL+ D + ILSDI Sbjct: 427 IRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYAILSDIL 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT+ GI A QMD+KI G+ ++ AL QAK RLHILNEM K ++ Sbjct: 487 GDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKKTIA 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597 R PR+ ++I + I VIG GGK+I+ + +TGA ++I+ + G V+I + Sbjct: 547 APREDYKAHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVGNKGIVEIFA 606 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A I+AA I +I PE+ Y+G+V +M FGAFV +DGL+HIS++ R+ Sbjct: 607 DNKAAIDAAVGRINAIAAKPEIGATYQGKVKSIMPFGAFVEIMPGKDGLLHISEIDWTRL 666 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 V KEGD V VKLLD D +GK+KLS K + KP Sbjct: 667 ETMDGVFKEGDKVEVKLLDVDKQGKMKLSRKALLPRPPKP 706 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 44/226 (19%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY---------DRSLKDG 53 DV TV RP+ E G + + G+ + T GET L TV D + +G Sbjct: 322 DVRTV------RPIWSEVGYLP-AAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFING 374 Query: 54 QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKN 109 + F L N+ G+ E RP EI + RS++ + +N Sbjct: 375 YNKFLLHYNFP-----------GFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGLEEN 423 Query: 110 ETQVIINVMQHDLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVL 163 I ++ LES S + ++ A + ALM +G+ + PV G + I +G+Y + Sbjct: 424 --PYTIRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYAI 481 Query: 164 NPRL--DEDQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAI 204 + DED G +D V+GT+ ++ ++L+ N L +V+ +A+ Sbjct: 482 LSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNAL 527 >gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] Length = 722 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 294/688 (42%), Positives = 437/688 (63%), Gaps = 10/688 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AG LK+ G++A Q++G L YG+TVVL T + ++G DFFPL+V+Y+E+ Y Sbjct: 7 MELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+++RE RP+E L +R+IDR +RPLF + Y+N+ Q++ V+ D + P + Sbjct: 67 AVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +M+ +S AL LS +PF+GP QV ++G+YV+NP ++ ++ ++L +SGT A++M Sbjct: 127 PAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSSAIMM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 VE AN +SE+ +L+AI+ GH K + I + KE K ++E+ Sbjct: 187 VEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEK---SKYILFKPDQEIVDK 243 Query: 248 IKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 +K+ D+ V+ +K VR K D K ++ +F + N ++ + E+I+ V Sbjct: 244 VKDFGTDILVNAIRQKDKVVREKLTDQAKDEIRQHFE-DLMEENSKDVEAAIEEIEVTEV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++++ R DGR E +R +S++VGLL R HGS LF RG TQ + V LG +EQ + Sbjct: 303 RRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTI 362 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + ++ HYNF + G+ +P RREIGHG LA RA+ PV+P +FPYT+ Sbjct: 363 DGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYTI 422 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSE+ S+GSSS A+VCGS+L+LMDAGVPI PVAGIAMGL+++ IL+DI G E Sbjct: 423 RVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGLE 482 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DH G MDFKVAGT GITA+QMD+K+ GI + I+ +AL++AK RL IL+ + + + R Sbjct: 483 DHFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKPR 542 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 L ++ P + I+ I P++I +VIG GGK I I+EQTG K++IDDDG V + S + Sbjct: 543 DHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEKA 602 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A +I SI EV Y G+V K+M FGAFV +GL+HIS+++ ER + DV Sbjct: 603 KEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGDV 662 Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 + GD + VK+++ +D GKI LS KV+ Sbjct: 663 LHVGDQLKVKVIEINDENGKISLSRKVL 690 >gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] Length = 716 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 281/692 (40%), Positives = 427/692 (61%), Gaps = 7/692 (1%) Query: 2 FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F H + + E AGRP +E G+ A ++ A L YG+T V + +DG DFFPL+ Sbjct: 10 FPNHKIFKTEIAGRPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLS 69 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+++E+ YAVG+IPG ++RRE RP+ +L SR+IDR IRPLF ++N+ + VM Sbjct: 70 VDFEEKLYAVGRIPGSFMRREGRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSV 129 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP V +M+ SA L S +PF GP+ +V Y +G+ V NP ++ + S +D+ V+ Sbjct: 130 DYDCSPEVTAMIGVSACLSYSEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSRMDVTVA 189 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+ V+M+E A+Q+ +D++ + I+ H E K + I+ + K + D DF++ Sbjct: 190 ATEKKVVMIEAGADQIPDDIMYEGIVKAHEEIKKQVAFINGIVSQIGKPKMEYDHADFNQ 249 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L +++ ++ + + +K +R ++ + + K + E+ ++ + Sbjct: 250 ELFDKIVDKYMDEAKAAMDTDDKNIREQRWNAMIDKWHEDYLEEYPEMDK-YLEEFTYKF 308 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q K+V+ +L R+DGR +R +SA+VG+L + HGS LF RG TQ + V TL T Sbjct: 309 QKKIVKAWLLQGH-RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLA 367 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D++ + +M HYNF P + GE + +RRE GHG LA RA+ PVLP + Sbjct: 368 ASQKLDTIWEEEEKRYMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDE 427 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILS 477 FPY +R+VSE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL++D D F Sbjct: 428 FPYAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDDGSFQTFI 487 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT +GITA+QMD+K G++ I+ AL+ K R IL+E M Sbjct: 488 DIQGVEDFHGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKQALEITKDARYAILDEIML 547 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R ++ ++ P++ M I D+IR VIG GG VI+ I ++GA V+IDDDGT+ IA Sbjct: 548 PCIAEPRPEVSKYAPKMITMKIDVDKIREVIGKGGSVIQKICAESGATVDIDDDGTIHIA 607 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S + +AA++MI +I VPEV ++Y G+VV+++ FGAFV +DG+VHIS+L+ R Sbjct: 608 SPNAEACDAAKKMIDTIVFVPEVGQLYYGKVVRILTFGAFVELAPGKDGMVHISKLADRR 667 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K DVV GD +WVK+ D D++G++ LS K Sbjct: 668 VEKVEDVVNIGDMIWVKVTDIDEKGRVNLSYK 699 >gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] Length = 580 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 269/569 (47%), Positives = 388/569 (68%), Gaps = 7/569 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ YA Sbjct: 11 EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ +RE RP ++ L +R+IDR IRPLF K YK++ Q++ V+ D + SP + Sbjct: 70 AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 +M+ +S AL +S +PF+GP+ G V YI+G+Y++NP ++E + S LDL V+G +DAV MV Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK--MCAKEPIVIDSKDFSKLEEEMSQ 246 E A++++E +L+AI FGH E + +++ ++ K+ + +D + +E S Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEALVERVKSL 249 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303 ++ L+ + +K R + +D+LK+++V+ F E NE E+ ++ ++ + V Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ D+K+R DGR + +R + ++VG+L RTHGS LF RG TQA+ V+TLG D Q + Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L + FM HYNF + GE + AP RREIGHG L RA+ ++P TA FPYT+ Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSE+ ES+GSSS A++CGS+LALMDAGVPI PVAGIAMGLV D + IL+DI G E Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D LG MDFKVAGT GITA+QMD+KI G++ I+ AL+QA+RGRL I+N M + + + R Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 +L + P+V M I PD+IR+VIG GGK Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGK 578 >gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] Length = 719 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 293/693 (42%), Positives = 439/693 (63%), Gaps = 19/693 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + +ETG++A+Q+DG+V+ G TV+LATVV KDG DF PLTV+Y+E+ A G+ Sbjct: 13 GKEISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLTVDYREKYAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE+RP+E EIL+ R++DR++RPLF Y E Q++I ++ +D ++P + + Sbjct: 73 FPGGFFRREARPSETEILVMRLVDRALRPLFPDDYHAEVQLMIQLLSYDGVNNPDALCGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V ING++++NP ++E + + +D+ V+GT V M+E E Sbjct: 133 AASAAIAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADIDMMVAGTMKDVNMIEGE 192 Query: 192 ANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244 ++SE +++AI H +C+ ++ + + K ++ D +K+ E Sbjct: 193 FQEISELEMVEAIKIAHAAIKEQCQFQLDLAALIPTANPKRVYSHETHDENVKAKVYELA 252 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 KE R + K R + D +K ++ + FS E + G I + F +++ K VR Sbjct: 253 MDKCKEVARQG--LANKAKRTELFDAIKTEVKAAFSEEELATVSGFISTYFSEVKKKAVR 310 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 VML+++ R+DGR + +R I A+V L HGS++F RG+TQ++ +TLG + DEQ +D Sbjct: 311 WVMLNEQKRLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLID 370 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 ++ F++HYNF P +TGE + SRREIGHG LA RA+ PVLP A YT+R Sbjct: 371 GVTFHGTEKFLLHYNFPPFSTGEAKPLRGTSRREIGHGNLALRALKPVLP--ADNAYTIR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VS+I ES+GSSSMATVC +LALMD GV I PV+GIAMGLV D F +LSDI GDED Sbjct: 429 LVSDILESNGSSSMATVCAGTLALMDGGVQIKAPVSGIAMGLVADEGKFAVLSDILGDED 488 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+K+ G+ +++ AL QA+ GR+HILN++ + ++ Sbjct: 489 HLGDMDFKVTGTSKGITACQMDIKVDGLPYEVLIQALDQARAGRIHILNKIIETIAVPNP 548 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD----DGTVKIASSSL 600 TPR+E +P D I +IG GGK+I+GI + T + I++ +G V+I S++ Sbjct: 549 DFKPQTPRIEAFNVPNDMIGAIIGPGGKIIQGIQKDTKTTITIEELETGEGRVQIMSNNA 608 Query: 601 AEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +++AA IR I P V++ Y+G+V + DFG FV DGL+HIS+ S E+VA Sbjct: 609 EDMDAANSRIRMIAFPPVVDEGAEYEGKVKAIKDFGVFVEILPGTDGLIHISEFSWEKVA 668 Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 K DVVKEGD + K++ D + K KLS +V+ Sbjct: 669 KMEDVVKEGDVLKFKVVGKDPKTKKWKLSRRVL 701 >gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CB0101] Length = 715 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 297/704 (42%), Positives = 423/704 (60%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HT I + GR ++L TGR A Q+ G+V+ G+T VL T ++G DF PL +Y+ Sbjct: 4 HTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRESRP E LI+R+IDR +RPLF +++ Q++ M D Sbjct: 63 ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+++ AS A +L+ +PF GP+ +V + +VLNP E ++ LDL V+GT + Sbjct: 123 PPDVLAVTGASLATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFS 238 V+MVE ANQL E V++AI FG+ +I+A L K EP D Sbjct: 183 GVIMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQALLKELGIEQVIPEPQTTDDTLPK 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGE 290 LE+E ++ I + L+ F K R +Q+D +K ++ S N Sbjct: 243 FLEKECAKGIGDVLKQ--FKLTKAERDEQLDAIKGQVAEKIDGLKDDDAIKVAVSSNGKA 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + ++ + K++R ++ R+DGR+ + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LGNSYKSLTKKLMRDQIVKDGKRVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ + ++ HYNF P +TGE M +P RREIGHG LA RA+ Sbjct: 361 SCATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERAL 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY LR+VSE S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 IPVLPSKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G + IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ + A+ QA+ RL Sbjct: 481 GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLEVKTVAEAINQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIEKPREVLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+ +I +T +++ G V +V+ GAFV ++G++HI Sbjct: 601 GGIVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFSGAVTRVIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVV+ GD V V++ + D+RG+I L+++ V Q+ Sbjct: 661 SQLSEARVEKVEDVVRVGDQVTVRVREIDNRGRINLTLRGVPQS 704 >gi|281355549|ref|ZP_06242043.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis ATCC BAA-548] gi|281318429|gb|EFB02449.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis ATCC BAA-548] Length = 703 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 291/690 (42%), Positives = 428/690 (62%), Gaps = 23/690 (3%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R +++ TG++A+ ++G+ L G+T+VL T + ++G DFFPL V+Y+E+ A GK Sbjct: 14 RTMEISTGKVAKLANGSCLVRLGDTIVL-TAACSGAPREGTDFFPLQVDYREKYSAAGKF 72 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PGGY++RE RP+ EIL RMIDR IRPLF + +E Q+ ++ D + P V++MV Sbjct: 73 PGGYIKREGRPSTKEILTCRMIDRPIRPLFPDYFFDEVQISSVLLSADGVNEPDVLAMVG 132 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192 ASA+LMLS LPF+GP+ +V ++GQ+V+NP R +Q L+L +G D V+M+E EA Sbjct: 133 ASASLMLSDLPFQGPIGAVRVGLVDGQFVINPTRAQMEQSKLELIYAGRPDQVIMIEGEA 192 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KLEEEMSQ 246 + +SE + +A+ + K +A +LAK + K++ L + + Sbjct: 193 DFVSEAQMKEAMYLANEAVKKQCDAQIELAKKAGRA-----KKEYKLYPVPEALMKGIEA 247 Query: 247 MIKEDLRVSCFIPEKYVRCKQID----DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + C IP K R +D D +K + F+ + E F+D+ V Sbjct: 248 FCADRIEAVCTIPGKEDRMVAMDALRDDARKALREQFADMSDTQFGLETAKGFDDLVRTV 307 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R V+L K+ R DGR + +R +SA+VG+L HGS+LF RG+TQA+V+ TLG +D Q Sbjct: 308 TRNVILQKQFRPDGRSTTEIRPLSAEVGVLPVVHGSALFSRGETQALVLATLGNEKDAQE 367 Query: 363 VDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 D L+ G + F +HYNF + GEV R+ P RREIGHG LA R++ V+P+ F Sbjct: 368 ADDLTSETGITKKRFYLHYNFPNFSVGEVGRITGPGRREIGHGNLAERSVSKVVPK--DF 425 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILSD 478 PY +R VSEI S+GS+SMA+VCG++LALMDAGVPIS PVAGI+ GLV D + ++L+D Sbjct: 426 PYVVRCVSEIMSSNGSTSMASVCGATLALMDAGVPISAPVAGISCGLVTGDNGERLLLTD 485 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKV GT GIT Q+D+K+ GI +++ +++ + R+ IL+ M Sbjct: 486 IIGAEDHFGDMDFKVCGTRDGITGFQLDLKLPGIPIDLLCEGMERNRIARMKILDVMEAC 545 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 +++ R ++ PR+E++ I P++I +IG GGK IR I E+TG ++IDDDG VKI + Sbjct: 546 IAKPREEISSRAPRLEVIQINPEKIGALIGPGGKNIRAITEETGTSIDIDDDGNVKIMAP 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +EAA+E I T E+ KIY+G+VV V DFGAFV DGL+HIS+++ RV Sbjct: 606 DKEHLEAAKERILGSTAEAEIGKIYRGKVVTVRDFGAFVEILPGVDGLLHISEMADYRVN 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K +D+ +EG V VK++D D GKI+LS K Sbjct: 666 KVTDICEEGQFVTVKVIDIDPSGKIRLSRK 695 >gi|255505938|ref|ZP_05349011.3| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens DSM 14469] gi|255265001|gb|EET58206.1| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens DSM 14469] Length = 689 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 286/694 (41%), Positives = 433/694 (62%), Gaps = 15/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L+++ GR+A+Q++GAVL YG+T VL+T ++G DFFPL+V Y+E+ Y Sbjct: 1 MELAGRTLRVDVGRVAKQANGAVLMHYGDTTVLSTATASEKPREGIDFFPLSVEYEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D + SP + Sbjct: 61 AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNLVLSVDPDCSPEL 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A ++S +PF+GP QV +NG++V NP + S L L V+ T+D V+M Sbjct: 121 TAMLGSAIATVISDIPFDGPTSTTQVGLVNGEFVFNPNAAQKAVSDLQLTVASTRDKVIM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEE 242 +E AN++ ED +++AI H + VI+ I + C KE + + F+ + E Sbjct: 181 IEAGANEVPEDKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHTYTSCAVPEELFAAIRE 240 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 +S E++ V+ F EK R I ++K K+ F +++ W +V++ Q K Sbjct: 241 VIS---PEEMEVAVFTDEKQKREANIREIKDKLAEKF-ADNEEWLALIDEAVYQ-YQKKT 295 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ + TL + Q Sbjct: 296 VRKMILKDHKRPDGRAINEIRPLAAEVDLIPRVHGSAMFTRGQTQICTITTLAPLSEAQK 355 Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L ++ + +M HYNF + GE P RREIGHG LA RA+ PVLP +FPY Sbjct: 356 IDGLDASETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPY 415 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479 +R VSE ES+GS+S A++C S+++LM AGVPI VAGI+ GLV + DD+I+L+DI Sbjct: 416 AIRTVSETFESNGSTSQASICASTMSLMAAGVPIKTAVAGISCGLVTGETDDDYIVLTDI 475 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538 G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + + RL+IL+E M+K Sbjct: 476 QGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTREARLYILDEVMAKT 535 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E R++L E+ P++ + I P +I +V+G GK I I+E+TG K++I DDG V I + Sbjct: 536 IAEPRMELSEYAPKIIQINIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICGT 595 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++ A +M+R IT E +I G VV + +FGAF+ F ++G+VHIS++S R+ Sbjct: 596 DKEQMARAMDMVRIITTEFEAGQILTGTVVSIKEFGAFLEFAPGKEGMVHISKISKGRID 655 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 K DV+K GD V V L D G++ SMK V+Q Sbjct: 656 KVEDVLKLGDVVKVVCLGKDKMGRVSFSMKDVEQ 689 >gi|325681163|ref|ZP_08160693.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8] gi|324107085|gb|EGC01371.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8] Length = 704 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 279/699 (39%), Positives = 438/699 (62%), Gaps = 19/699 (2%) Query: 1 MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF + T E +AGRP+ +ETG+ ++G+ YGETVV+A V + ++G DFFPL Sbjct: 1 MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+++E+ YAVG+IPG + +RE + ++ IL SR +DR IRPLF K +N+ V++ V+ Sbjct: 61 SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 D ++SP + M+A + A+ +S +P+ GPV V Y++G+ VLNP L++ + L+L V Sbjct: 121 VDPDNSPEITGMIATAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNKLNLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 +G+ + ++M+E A ++ +D++L AI GH E K ++E I + K +S + Sbjct: 181 AGSAEKIVMIEAGAEEIPDDLMLKAIETGHAEIKKMVEFIKGIQAEIGKPKFEFESMEVD 240 Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEI 291 L +E+ M+ ED++ + +K VR +M + + H ++E + Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNVR-------DARMQPIYDAVHEKYDEQYPDQGAML 293 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 V +Q K+VR + + K R+DGR + +R ++A+VG+L R HGS +F RG TQ + V Sbjct: 294 EEVLYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTV 352 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG D Q +D L +M YNF + GE P RREIGHG LA RA+ P Sbjct: 353 CTLGPISDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVP 412 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDG 470 VLP +FPY +R VSE+ S+GS+S ++CGS+LALMDAGVPI +PVAGI+ GL+ K+ Sbjct: 413 VLPSVEEFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKED 472 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 ++ + DI G ED G MDFKV GT +GITA+Q+D+K+ G++ +I+ A ++ ++ R++ Sbjct: 473 GSWMTMVDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMY 532 Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL+E M K + E R ++ ++ P++ +P D+IR VIG GGKVI+ I + K++I++ Sbjct: 533 ILDEIMLKAIPEVRPEVSKWAPKMLTTKVPVDKIREVIGSGGKVIQKISAECEVKIDINE 592 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG+V ++ + + A +I +I + PE+ IYKG+VV++M+FGAFV +DGLVHI Sbjct: 593 DGSVFVSGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHI 652 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S+L +RV K DVV GD + VK+++ DD+G+I LS K Sbjct: 653 SKLDKQRVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRK 691 >gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110] gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110] Length = 715 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 299/695 (43%), Positives = 440/695 (63%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GAVL G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTSKG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF +++E Q+I + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++ + +PF GP+ +V I +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVESGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I A + +L K+ EP +D + + Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMKLVKAEPPGVDEALEKFISD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------HSSWNEGEIVS 293 + IK+ L + K R +D++K+ + +E ++ + + Sbjct: 247 RAADSIKKVL--VQYDLGKAERDTALDNIKETAIEEVIAELPEEDPIKVTTTEDPKAVGK 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352 V++ + K++R+ ++D+ +R+DGR + VR IS +VGLL R HGS+LF RG TQ + Sbjct: 305 VYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364 Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q + D L ++ HYNF P + GE + +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAITP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+++G Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIREGK 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ A++QA RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + + R +L F PR+ M I P+QI VIG GGK I+ I EQTG+K++I DDG Sbjct: 545 LEKMLGAIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ + E AR++I ++T ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K + V GD V VK+ + D++G++ L+ Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699 >gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 725 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 282/679 (41%), Positives = 426/679 (62%), Gaps = 14/679 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G ++LATVV ++ +G DF PLTV+Y+E+ A G+ Sbjct: 15 GRTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RESRP++ EIL R++DR +RPLF + Y E QV+I +M HD P ++ + Sbjct: 75 FPGGFFKRESRPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMIQLMSHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V INGQ+V+NP E Q +D+ V +++ V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKELTQSDMDIMVGASKEFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE + DAI F H K IEA +L K V+ + + + +E++Q I + Sbjct: 195 MDEVSEKDMADAIRFAHEAIKTQIEAQERLKAKVGK---VLRAYEVPQENKEVAQKIYDF 251 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 C+ K+ R + D +K++ + F+ E + F Q + VR + Sbjct: 252 CYDKCYAIAKENTTKHERNDKFDAVKEECKALFTEEELEEYSALVNKYFSKAQKEAVRNL 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L++ +R+DGR+++ +R I +VG L HGSS+F RG+TQA+ VTLGT + +D Sbjct: 312 ILNEDIRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATVTLGTSREANVIDIP 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 S F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ PYT+R+V Sbjct: 372 SEQSEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PYTVRVV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEI ES+GSSSMATVC +LALMDAG+ + KPV+GIAMGL+ DGD + +LSDI GDEDHL Sbjct: 430 SEILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSDILGDEDHL 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+KI G++ I+ AL+QA+ GR++IL +++ ++ + Sbjct: 490 GDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMYILGKITDTIAVPNPTV 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 P++ + +P + I IG GGK I+ + E+T + +++ G + I + E Sbjct: 550 KPHAPKIIRLEMPKEYIGAFIGTGGKNIQDLQERTKTTIVVEELGELGIVEILGTDTEGI 609 Query: 607 REMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +E + ++ V P +IYK +V +++DFGAFV F +D L+H+S+++ ERV K SDV Sbjct: 610 QEAVDAVYHVSFEPVEGEIYKVRVARLVDFGAFVEFVPGKDSLLHVSEIAWERVEKPSDV 669 Query: 664 VKEGDTVWVKLLDFDDRGK 682 +KEGD + VK L D + K Sbjct: 670 LKEGDIIEVKYLGIDPKTK 688 >gi|254425324|ref|ZP_05039042.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335] gi|196192813|gb|EDX87777.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335] Length = 716 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 295/693 (42%), Positives = 430/693 (62%), Gaps = 18/693 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I GR ++L+ G A Q+ G+VL + G+T VL T S ++G DF PL V+Y+ER Y Sbjct: 8 ISIDGRDIQLKAGLFAPQAGGSVLISSGDTAVLVTATRS-SGREGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E L SR+IDR +RPLF + +++ Q++ + D + P V Sbjct: 67 AAGRIPGGFLRREGRPPERATLTSRLIDRPMRPLFPQWIRDDIQIVATTLSMDEDVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 ++ AS A++L+ +PF GP+ +V + +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAATGASIAVLLAEIPFNGPMATVRVGLVGDDFIINPTYQEIENGELDLIVAGSPDGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPI-VIDSKDFSKLEE 242 VE ANQL E V++AI FG+ + +I+A + +L EP V D + L + Sbjct: 187 VEAGANQLPEQDVIEAIDFGYEVVRDLIQAQLDLVEELGLERPTEPAPVADPSLEAFLSD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSV 294 + IKE L+ F K R ++D +K + +++ N + Sbjct: 247 RATADIKEVLK--QFDQSKSERDSKLDAIKATIAEEIAAKDEDDAVRIAIDSNSKALGKS 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+ + K++R+ +L++ VR+DGR + +R I+ + G+L R HG+ LF RG TQ + V T Sbjct: 305 FKSLTKKLMRSQILEEGVRVDGRKLDEIRKITCRTGVLPTRVHGTGLFRRGLTQVLSVTT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D L + ++ HYNF P + GE M +P RRE+GHG LA RA+ PVL Sbjct: 365 LGTPGDAQMMDDLHPGEEKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALIPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPY +R+VSE S+GS+SM +VCGS+L+LMDAGVPI +PV+G AMGL+++GD+ Sbjct: 425 PSQEDFPYVIRVVSECLSSNGSTSMGSVCGSTLSLMDAGVPIMQPVSGAAMGLIREGDEV 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ILSDI G ED LG MDFKVAGT+SGITA+Q+DMKI G+ ++ A+ QA+ RLHIL Sbjct: 485 RILSDIQGIEDFLGDMDFKVAGTESGITALQLDMKITGLPMEVIGEAINQARPARLHILE 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M L + R ++ + PR+ M + PDQI VIG GGK I+ I E TGAKV+I+DDGTV Sbjct: 545 KMLGELDKPRTEVSPYAPRLLTMQVKPDQIGMVIGPGGKQIKAITEATGAKVDIEDDGTV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I++ + + A++MI IT VPE +Y G+V +V+ GAFV ++G++HISQL+ Sbjct: 605 TISAVDSDKAKQAQKMIEGITHVPEAGNVYMGKVTRVIPIGAFVEIMPGKEGMIHISQLA 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V D V VK+ + D+RG++ L+ Sbjct: 665 DYRVNKVEDEVDVDDEVLVKVREIDNRGRVNLT 697 >gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] Length = 719 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 294/694 (42%), Positives = 426/694 (61%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GAVL G+T VL T + G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP + L SR+IDR +RPL +++ Q++ + D + P V Sbjct: 67 AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++++ +PF GP+ +V + +++NP E G LDL V+G+ + V+M Sbjct: 127 LAVTGASVAVVMAQIPFYGPMAAVRVGLLGDDFIINPTYREVRNGDLDLVVAGSPEGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ +I+A ++AK + E D+ + E Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVCDLIKAQQEIAKELNIDITPGESPQEDTTLVEFIRE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVS 293 ++ IK+ L F K R +D++K V +E S + I Sbjct: 247 RTTEPIKQVLTQYHF--AKSERDAALDEIKHTQVEEPLAEKPEDDPLQVLISEDPKAISR 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 +F+D+ + +R ++ +R+DGR+ + VR +S +VG L +R HGS LF RG TQ + + Sbjct: 305 IFKDVTREFMRQQIVQDSIRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSIA 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L +M HYNF P + GE M +P RREIGHG LA RA+ PV Sbjct: 365 TLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETKPMRSPGRREIGHGALAERALLPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP QFPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVPI+KPV+G AMGL+K+G++ Sbjct: 425 LPVKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPITKPVSGAAMGLIKEGEE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++ A+ QAK RLHIL Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVIAKAIHQAKPARLHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M + + + R L F PR+ M I PD I VIG GGK I+GI E+TG K++IDDDGT Sbjct: 545 ESMLEAIQKPRSDLSPFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS+ + A ++I+ +T +Y G++ +++ GAFV ++G++HISQL Sbjct: 605 VTIASTDSDKAARACQIIQGMTRKLNEGDVYVGRITRIIPIGAFVEVLPGKEGMIHISQL 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV + D V GD V VK+ + D +G+I L+ Sbjct: 665 ADYRVPRVEDEVAIGDEVIVKVREIDSKGRINLT 698 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 24/203 (11%) Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSL 366 +D+ + DGRD I ++GLL G ++ I GDT +V T E +D L Sbjct: 4 MDRSISFDGRD------IRLKIGLLAPQAGGAVLIESGDTSVLVTATRA--EGRPGIDFL 55 Query: 367 SGTQRNDFMMHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++ Y A G + R G P R RL R + P++P + Sbjct: 56 P------LLVDYEERLYAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDI 109 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 + + + + V G+S+A++ A +P P+A + +GL+ GDDFII + + Sbjct: 110 QIVATTLSMDEQVPPDVLAVTGASVAVVMAQIPFYGPMAAVRVGLL--GDDFII--NPTY 165 Query: 482 DEDHLGHMDFKVAGTDSGITAMQ 504 E G +D VAG+ G+ ++ Sbjct: 166 REVRNGDLDLVVAGSPEGVVMVE 188 >gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri] Length = 702 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 294/693 (42%), Positives = 439/693 (63%), Gaps = 33/693 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L +E G++A+Q+ G+VL YG+TVVL T + L + DFFPLTV +QE+ Y+VGKIPG Sbjct: 15 LIVEHGQLAKQASGSVLVRYGDTVVLVTATVNNKLSE-VDFFPLTVVFQEKLYSVGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE +P+E L +R+IDR++RPLFS+ ++NE Q++INV+ D ++ +VS+ AAS Sbjct: 74 GFLKREGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFAAS 133 Query: 136 AALMLSGLPFEGPVVGA--QVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 AL +S +PF GPV GA VD N ++NP L++ + G ++L V+GT +A+ MVE A Sbjct: 134 LALSISKIPFAGPVAGALVTVDQKNN-IIINPTLEQINDGQMELIVAGTDEAINMVEAGA 192 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE-- 250 ++SE+++L AI+ GH+ VI+ ++ A + +I K+E E+ Q+ E Sbjct: 193 KEVSENLMLQAILAGHD----VIQ------QLIAFQHEIIAKVGVPKMEVELFQVRPEII 242 Query: 251 ---------DLRVSCFIPEKYVRCKQIDDLKKKMVSYF------SSEHSSWNEGEIVSVF 295 DL + I EK R + I+ L ++ + + S + E+ + Sbjct: 243 TYVNNNYAKDLITAARIKEKTKRYETIEHLIEQAIKNYPMPVSLSEKEQKQLTVELKTAL 302 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 +I + VR +L K R+DGR + +R +S+++ +L HGS+LF RG+TQ + VVTLG Sbjct: 303 HNIIRQEVRRQILIDKTRLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLG 362 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D ++ + FM HYNF + GE RMG PSRREIGHG L + + ++P Sbjct: 363 ALGENQIIDGITDEESKRFMHHYNFPAFSVGETGRMGPPSRREIGHGALGEKVLLQIIPS 422 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 FPYT+RIVSE+ ES+GS+S A++C ++LALM AGVPI+ PV GIAMGL+K+ +++ I Sbjct: 423 EKVFPYTIRIVSEVLESNGSTSQASICAATLALMAAGVPITAPVVGIAMGLIKEKNNYTI 482 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+ AL+ AK+ RL IL+ + Sbjct: 483 LTDIQGMEDHLGDMDFKVAGTATGICALQMDIKIVGINKAILQEALKAAKKARLTILDNV 542 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVK 594 +S R L P+++ IP D+IR VIG GGK+I I+E++ K++I+DDG V Sbjct: 543 LATISAPRTHLAPTAPKMKTFMIPVDKIREVIGPGGKMITAIIEKSDDVKIDIEDDGQVT 602 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I IE A ++I++I V + G VVK+ FG FVH DGL+HIS+L+ Sbjct: 603 IYHKETTAIEKAYQLIKAIAMPVVVGEKIIGPVVKIEKFGVFVHLKENLDGLIHISKLAK 662 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + V K D+V+ D V VK+++ D +GKIKL + Sbjct: 663 QHVEKAEDIVQLNDIVKVKVIEIDGKGKIKLQL 695 >gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 716 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 287/689 (41%), Positives = 427/689 (61%), Gaps = 18/689 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +KL GR A Q+ G VL GET VL T S ++G DF PL V+Y+ER YA G+ Sbjct: 12 GREIKLTIGRFAPQAGGCVLIESGETSVLVTATRS-SGREGIDFLPLLVDYEERLYAAGR 70 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PGG+LRRE RP E L R+IDR +RPLF +++ Q++ + D + P V+++ Sbjct: 71 VPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVT 130 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS A +L+ +PF+GP+ +V + +++NP +E +G LDL V+G+ D V+MVE Sbjct: 131 GASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDGVIMVEAG 190 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQ 246 AN+++E +++AI FG+ +I+A +L E + D + ++E ++ Sbjct: 191 ANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDPTLENFVQERVTD 250 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSVFEDI 298 +K+ L + F +K VR +D++K+ + + N I VF+ I Sbjct: 251 PVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVENPKAIGKVFKSI 308 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTR 357 ++R +++ KVR+DGR + VR IS VG+L QR HGS LF RG TQ + + TLGT Sbjct: 309 TKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTP 368 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + ++ HYNF P + GE M +P RRE+GHG LA RA+ P+LP Sbjct: 369 GDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALLPMLPSKE 428 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY LR+VSE+ S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+G++ +L+ Sbjct: 429 EFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLT 488 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED LG MDFKVAGT GITA+QMDMKI G+S ++ A+ QAK RLHIL++M Sbjct: 489 DIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKMLA 548 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R + + PR+ + I P+QI +IG GGK I+GI E+TGAK++I+DDG V I++ Sbjct: 549 TIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKIDIEDDGRVTISA 608 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 AR++I +T ++ G+V +++ GAFV +++G++HISQL+ RV Sbjct: 609 VDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRV 668 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 K D V GD V VK+ + D+RG+I L+ Sbjct: 669 GKVEDEVTVGDEVVVKIRELDNRGRINLT 697 >gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC 73102] gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102] Length = 718 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 292/692 (42%), Positives = 429/692 (61%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T ++ ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQA-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ Q+I + D P V Sbjct: 67 AAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ V+M Sbjct: 127 LAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A +++L + +E P +D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLVIVQEAPPEVDQTLENYIRD 246 Query: 243 EMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296 S IK+ L F PE+ + D + E ++ N + + F+ Sbjct: 247 RASGQIKKILSQFTFTKPERDAALDVVKDEIATTIKELPEEDPIRVAATANNKALGNTFK 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355 DI +R +++ VR+DGR + VR +S VG+L +R HGS LF R TQ + TLG Sbjct: 307 DITKYFMRRQIIEDNVRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLSTCTLG 366 Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 T D Q + D + Q ++ HYNF P + GE M +P RREIGHG LA R++ PVLP Sbjct: 367 TPGDAQNLNDDMQLDQHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERSLIPVLP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 QFPY +RIVSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+KDGD+ Sbjct: 427 SKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKDGDEVR 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ A+ QAK RLHIL + Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKIPGLSLDVISQAVHQAKAARLHILEK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + R++ + PR+ + I D I VIG GGK I+GI E+TGAK++I+DDGTV Sbjct: 547 MLACIDTPRIETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I++ + + AR +I+ +T +Y G++ +++ GAFV F ++G++HISQL+ Sbjct: 607 ISAVDENKAKRARNIIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIHISQLAD 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 RV K D V GD V +K+ + D++G+I L+ Sbjct: 667 YRVGKVEDEVAVGDEVIIKVREIDNKGRINLT 698 >gi|323692624|ref|ZP_08106856.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum WAL-14673] gi|323503321|gb|EGB19151.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum WAL-14673] Length = 707 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/697 (41%), Positives = 428/697 (61%), Gaps = 19/697 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E GR L ++ GR+A Q++GA YG+T VL+T +DG DFFPL+V ++E+ Y Sbjct: 7 MELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 67 AVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 +M+ A+ A +S +PF+GP Q+ I+G++++NP L + L L V+ T++ V+M Sbjct: 127 TAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED+VL AI H+ + +I+ I + C K +S + EE+ Sbjct: 187 IEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IKE ++ + F EK R + I + ++ F +++ W GE V + Q Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAF-ADNEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ +L R HGS +F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L +++ +M HYNF + GE P RREIGHG LA RA+ PVLP+ +F Sbjct: 360 QKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPREEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI PVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + R+HIL++ M Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V++E R +L ++ P++E + I P +I +V+G GKVI I+EQTG K++IDD GTV + Sbjct: 540 PVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVAVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+ A +I+SI E ++ G VV++M+FGAFV +DG+VHIS+LS +R Sbjct: 600 GTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V K DVV GD V VK+++ D G+I LSMK D N Sbjct: 660 VGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLN 696 >gi|187611320|sp|Q7UR95|PNP_RHOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 753 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG IA+Q+ G+VL YGETVVL + + G DFFPL +Y+ER A GK PG Sbjct: 17 LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 75 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE RP+ EIL SR++DR IRPL+ YK+E QV V+ DL++ V++M+ + Sbjct: 76 GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 135 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AL +S LPF+GP+ +V ++G+ V P D+ +Q LD+ VSG++D V M+E AN+ Sbjct: 136 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 195 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254 + ED +++AI F H+ + VI+ + K E S + L + ++ D + Sbjct: 196 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 255 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311 + K R + + ++ + ++ + ++ + SV+ D++ KVVR ++L Sbjct: 256 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 314 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 R DGRD ++R I + LL R HGS+LF RG+TQA++ + LGT DEQ VD L Sbjct: 315 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 374 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 FM+ YNF + GE + P RREIGHG LA R++ PVLP FPYT+R++S+ITE Sbjct: 375 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 434 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490 S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD Sbjct: 435 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 494 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FK+AGT +GIT +Q+D+K+ G++ +I+ L+Q++ R+ IL +M + R ++ Sbjct: 495 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 554 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ I PD+I +IG GGK IRGI E TGA + +DD+GTV +ASS+ + A + Sbjct: 555 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 614 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 + T ++ KIY G V + +FGAFV RDGLVHIS++S ++ V+ GD + Sbjct: 615 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 674 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696 V ++D D+ ++KLS + + G+ Sbjct: 675 KVLVIDVDEHDRVKLSRRKALEELGE 700 >gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica WH47] Length = 819 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG IA+Q+ G+VL YGETVVL + + G DFFPL +Y+ER A GK PG Sbjct: 82 LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 140 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE RP+ EIL SR++DR IRPL+ YK+E QV V+ DL++ V++M+ + Sbjct: 141 GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 200 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AL +S LPF+GP+ +V ++G+ V P D+ +Q LD+ VSG++D V M+E AN+ Sbjct: 201 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 260 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254 + ED +++AI F H+ + VI+ + K E S + L + ++ D + Sbjct: 261 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 320 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311 + K R + + ++ + ++ + ++ + SV+ D++ KVVR ++L Sbjct: 321 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 379 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 R DGRD ++R I + LL R HGS+LF RG+TQA++ + LGT DEQ VD L Sbjct: 380 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 439 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 FM+ YNF + GE + P RREIGHG LA R++ PVLP FPYT+R++S+ITE Sbjct: 440 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 499 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490 S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD Sbjct: 500 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 559 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FK+AGT +GIT +Q+D+K+ G++ +I+ L+Q++ R+ IL +M + R ++ Sbjct: 560 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 619 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ I PD+I +IG GGK IRGI E TGA + +DD+GTV +ASS+ + A + Sbjct: 620 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 679 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 + T ++ KIY G V + +FGAFV RDGLVHIS++S ++ V+ GD + Sbjct: 680 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 739 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696 V ++D D+ ++KLS + + G+ Sbjct: 740 KVLVIDVDEHDRVKLSRRKALEELGE 765 >gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica SH 1] gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica SH 1] Length = 818 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG IA+Q+ G+VL YGETVVL + + G DFFPL +Y+ER A GK PG Sbjct: 82 LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 140 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+L+RE RP+ EIL SR++DR IRPL+ YK+E QV V+ DL++ V++M+ + Sbjct: 141 GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 200 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AL +S LPF+GP+ +V ++G+ V P D+ +Q LD+ VSG++D V M+E AN+ Sbjct: 201 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 260 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254 + ED +++AI F H+ + VI+ + K E S + L + ++ D + Sbjct: 261 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 320 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311 + K R + + ++ + ++ + ++ + SV+ D++ KVVR ++L Sbjct: 321 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 379 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 R DGRD ++R I + LL R HGS+LF RG+TQA++ + LGT DEQ VD L Sbjct: 380 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 439 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 FM+ YNF + GE + P RREIGHG LA R++ PVLP FPYT+R++S+ITE Sbjct: 440 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 499 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490 S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD Sbjct: 500 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 559 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FK+AGT +GIT +Q+D+K+ G++ +I+ L+Q++ R+ IL +M + R ++ Sbjct: 560 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 619 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ I PD+I +IG GGK IRGI E TGA + +DD+GTV +ASS+ + A + Sbjct: 620 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 679 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 + T ++ KIY G V + +FGAFV RDGLVHIS++S ++ V+ GD + Sbjct: 680 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 739 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696 V ++D D+ ++KLS + + G+ Sbjct: 740 KVLVIDVDEHDRVKLSRRKALEELGE 765 >gi|323483661|ref|ZP_08089044.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum WAL-14163] gi|323402997|gb|EGA95312.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum WAL-14163] Length = 707 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/697 (41%), Positives = 427/697 (61%), Gaps = 19/697 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E GR L ++ GR+A Q++GA YG+T VL+T +DG DFFPL+V ++E+ Y Sbjct: 7 MELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 67 AVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 +M+ A+ A +S +PF+GP Q+ I+G++++NP L + L L V+ T++ V+M Sbjct: 127 TAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED+VL AI H+ + +I+ I + C K +S + EE+ Sbjct: 187 IEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IKE ++ + F EK R + I + ++ F +++ W GE V + Q Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAF-ADNEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ +L R HGS +F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L +++ +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI PVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + R+HIL++ M Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V++E R +L ++ P++E + I P +I +V+G GKVI I+EQTG K++IDD GTV + Sbjct: 540 PVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVAVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+ A +I+SI E ++ G VV++M+FGAFV +DG+VHIS+LS +R Sbjct: 600 GTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V K DVV GD V VK+++ D G+I LSMK D N Sbjct: 660 VGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLN 696 >gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale ART12/1] Length = 574 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 275/577 (47%), Positives = 383/577 (66%), Gaps = 9/577 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 ++T E GR +ETG++A+Q++GAVL YGETVVL T ++G DFFPLTV+Y Sbjct: 1 MYTFETTLGGRSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDY 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ YAVGKIPGG+++RE RP E+ IL SR+IDR IRPLF + Y+N+ Q++ V+ + + Sbjct: 61 EEKMYAVGKIPGGFIKREGRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQD 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 ++P + M+ AS AL +S +PF GP+ G +V I+G++V+NP +++ + S L+L V+G+ Sbjct: 121 NAPEIAGMIGASCALSISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKSDLNLTVAGSY 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 DAV+MVE AN+LSE+VVLDAI+FGH E K +++ ++ + C KE + E Sbjct: 181 DAVMMVEAGANELSEEVVLDAILFGHEEIKRLVKFQQEMMEKCGKEK---HQPKLFTVPE 237 Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E+ I E + +K R + + ++K + +F + + EI V Sbjct: 238 ELVNAIHEYTYDKFDAAVRDADKLRRDEHVAEVKAQAKEHFLELYPEMDM-EIDYVLYKT 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +VR ++ +K+R DGR E VR IS +VG+L RTHGS+LF RG TQ + V TLG Sbjct: 297 LKGIVRHMITHEKIRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALG 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D + ++ HYNF + GE M +P RREIGHG LA RA+ PV+P + Sbjct: 357 DEQVIDGIGDDTSKRYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYTLR+VSE+ ES+GSSSM +VCGS+L+LM AGVPI KPV+G AMGLVKDGD + IL+D Sbjct: 417 FPYTLRLVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAYTILTD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAGT GITA+QMD+K+ G+S I+ AL QAKRGR IL++M + Sbjct: 477 IQGMEDALGDMDFKVAGTPDGITAIQMDIKVDGLSREILAAALAQAKRGREFILSKMLEC 536 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 +SE +L + PRV M IP D+IR+VIG GGK I+ Sbjct: 537 ISEPNKELSPYAPRVNSMKIPTDKIRDVIGPGGKTIK 573 >gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] Length = 751 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 296/711 (41%), Positives = 437/711 (61%), Gaps = 31/711 (4%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 + E + + KLE+G +A+Q+ G L + G++ V TVV + K+ DFFPLTV++ E Sbjct: 5 SYEFDLFNKHYKLESGELAKQATGQCLVSCGDSTVNLTVVVSKERKN-YDFFPLTVDFIE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RE+RPTE L +RMIDR IRP F ++NE Q++ + D Sbjct: 64 KMYAVGRIPGGYLKREARPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQIHP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + ++ ASAA+ G+PFEGP+ ++ D G+Y++NP +E + S LDL ++G++ Sbjct: 124 VDTICVMGASAAMYTGGVPFEGPLACVRIGRDKTTGEYLVNPTYEERKNSDLDLELAGSE 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN-------ECKPVIEAISKLAKMCAK------EP 229 + M+E A ++SED +LDA+ FG E K + +C K EP Sbjct: 184 TFISMLEAGAEEISEDDMLDAMAFGQKAIAAFCAEQKNFFAKYEAVNGVCEKKSYELDEP 243 Query: 230 IV-IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 I + ++ F+ +E MS +K+ +K R +++ LK +V F+ + + E Sbjct: 244 IEEVHNRVFAHFDE-MSAALKD--------ADKLSRMDKVEALKAAIVEEFTEDEQAEWE 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + + ++ +R ++++ R+DGR + VR + + L HGS LF RG TQ Sbjct: 295 LAIPAELKSLEKHAMRKMVVETGERVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQV 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + + TLG + Q +D++ T+ ++ HYNF P TGE R+G+P RREIGHG LA RA Sbjct: 355 LSIATLGMLSEWQRLDTIEPTEGKRYIHHYNFPPYCTGETGRLGSPKRREIGHGNLAERA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PV+P +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL++ Sbjct: 415 LLPVIPSEEEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIKRPVSGVAMGLIQ 474 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + ++L+DI G ED LG MDFKV GT GITAMQMD K G++ I+ AL+QA GR Sbjct: 475 EEGKTVVLTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALKQAHEGR 534 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 +HIL+ M + ++R E P++ M IP D IR+VIG GGKVIR I ++TGA V I Sbjct: 535 MHILDAMLAAVPQTRTATKETAPQIISMKIPVDNIRDVIGSGGKVIRAIQDETGATVEIQ 594 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 +DG+V I+ A + A++ I +I VPEV + Y G+VV + FGAFV +DGL+H Sbjct: 595 EDGSVFISGVGDAG-KLAQDRILAIIKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLH 653 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI---KLSMKVVDQNTGK 696 IS+++ RV K DV+ GD V V++LD DD+GKI +L V QN G+ Sbjct: 654 ISRVAQGRVNKIEDVLSVGDEVRVRVLDVDDKGKISLDRLDKPEVAQNDGQ 704 >gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 780 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 298/695 (42%), Positives = 450/695 (64%), Gaps = 28/695 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q++G+V+ G T++LATVV ++ G DF PLTV+Y+E+ Y+ GK Sbjct: 16 GREITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFYSGGK 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE+RP++ EIL R++DR +RPLF + E QV+I+++ +D E P ++ + Sbjct: 76 IPGNFFRREARPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMISLISYDKECMPEALAGL 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ ++ +PF GP+ V I+GQ V+NP R + D+ L++ V T+D+++MVE Sbjct: 136 AASAAIAITDIPFNGPMSEVTVARIDGQLVVNPSRENLDKADLNILVGATKDSIVMVEGV 195 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIK 249 ++++E+ +++AI F H E K +EA +LA+ K + ++++ +EE+ + + Sbjct: 196 MDEITEEEMIEAIKFAHEEIKVQVEAQERLAERVGKS---LPKREYTHENHDEEIREKVW 252 Query: 250 EDLRVSCFIPEKYVRCKQ--IDDLKKKMVSYFSSEHSSWNEGEIVSV-------FEDIQA 300 +D + K K+ D+ K + + + ++E E+ +V F D++ Sbjct: 253 KDTFDKVYEVAKTPSAKEERHDNFKAVLEEFL----AQYSEEELETVKPFAKIYFHDVEK 308 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + +R ++L++K+R+DGR ET+R I ++V L HGS++F RG+TQ++ VTLG+ +D Sbjct: 309 EAMRQMILNEKIRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDA 368 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 VDS++ F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A+ P Sbjct: 369 NMVDSVAINYDEKFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALSRIIP--AENP 426 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSD 478 YT+RIVS+I ES+GSSSMATVC +LALMDAGV I+KPV+GIAMGLV D + F +LSD Sbjct: 427 YTIRIVSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESGKFTVLSD 486 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKV GT GITA QMD+KI G+S +IM AL+QA+ GRLHIL EM K Sbjct: 487 ILGDEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMETALKQAREGRLHILGEMLKT 546 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKI 595 L R+ + P++E++ IP + I VIG GGK+I+ + + + I++ G ++I Sbjct: 547 LDAPRVDVKPHAPKMEVLEIPKEFIGGVIGPGGKIIQQMQKDFQTVIAIEEIGEIGRIEI 606 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + S I A I IT VP V ++Y G+VVKVMDFGAFV +GL+HIS++ Sbjct: 607 SGVSRENINATIAAINEITFVPTVGEVYNGRVVKVMDFGAFVAIAKGTEGLLHISEIEWA 666 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R+ K EGD V VK + +DDR K+KLS KV+ Sbjct: 667 RLDKVP--YNEGDMVEVKFMGYDDRKKMKLSRKVL 699 >gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM 20469] gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM 20469] Length = 732 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 291/698 (41%), Positives = 431/698 (61%), Gaps = 30/698 (4%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E + G+ LE G +A+Q+ GA + G++ VL T V + KD DFFPLTV++ E Sbjct: 5 THEFDLYGKHYTLEAGELAKQATGACIVKCGDSTVLLTAVVSKERKD-YDFFPLTVDFIE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG++PGGYL+RE+RP+E L +RMIDR +RP F + ++NE Q++ + D ++ Sbjct: 64 KMYAVGRVPGGYLKREARPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQVNA 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPV----VGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 +S++ ASAAL + G+PFEGP+ +G D G++++NP +E D LDL + G Sbjct: 124 VDTISVMGASAALAVGGVPFEGPLACVRIGRNAD--TGEFLVNPTYEERDHSDLDLELGG 181 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAK--------- 227 + + M+E A+++SE+ +L A+ FG C+ + I+K ++ Sbjct: 182 SSTFISMLEAGADEISEEDMLSAMAFGQEAIAAFCEEQKKFIAKWEEVNGPIVKREYILD 241 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 EPI ++MS +K+ +K R +++ DL ++ + F+ E Sbjct: 242 EPIAEVHDRIFAYYDQMSAALKD--------ADKQSRMQKVADLMDEIKAQFTEEEQELW 293 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 I + ++ +R ++++ R+DGR + +R I + L HGS LF RG TQ Sbjct: 294 SRAIAVELKALEKHAMRVMVVETGERVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQ 353 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + + TLG + Q +D++ ++ HYNF P TGE RMG+P RREIGHG LA R Sbjct: 354 VLSICTLGMLNEWQRLDTIEPMDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAER 413 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PV+P +FPYT+R+VSE+ ES+GSSSMA+ CGS+L+LMDAGVP+ +PV+G+AMGL+ Sbjct: 414 ALLPVIPSEEEFPYTIRVVSEVMESNGSSSMASTCGSTLSLMDAGVPLKRPVSGVAMGLI 473 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 ++ ++L+DI G ED LG MDFKV GT GITAMQMD K G++ I+ AL QA G Sbjct: 474 QENGKTVVLTDIQGLEDFLGDMDFKVCGTTKGITAMQMDNKATGLTPEILRNALMQAHEG 533 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R+ ILN+M + + R + E P++ ++IP D+IR+VIG GGKVIRGI E TGA V+I Sbjct: 534 RMFILNKMLEQIPAPRTETKETAPQIISLSIPIDKIRDVIGSGGKVIRGIQEDTGATVDI 593 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DGTV IA ++ A EAA E I++I VPEV + Y G+VV + FGAFV +DGL+ Sbjct: 594 QEDGTVFIAGTNGA-AEAAAERIKAIVKVPEVGEEYTGRVVGLQPFGAFVELLPGKDGLL 652 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 HIS+++ RV K DV+ GD V VK+L+ D++GKI L Sbjct: 653 HISRVAQGRVEKIEDVLAIGDEVKVKVLEVDEKGKISL 690 >gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 773 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 289/694 (41%), Positives = 436/694 (62%), Gaps = 20/694 (2%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +E GR A+Q+DGAV+ G T VL T V DF PLTV+Y+ER A G+IP Sbjct: 13 PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+++RE +P+E E+L SR+IDR +RPLF + + ++ V + D P V+++ A Sbjct: 73 GGFVKREGKPSEREVLASRVIDRPLRPLFPEGFFHDVVVTALTLSADDNYDPDVLAITGA 132 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEAN 193 SAAL +S +PFEGP+ G +V + G++V NP +E + L++ ++GT+DA++MVE A Sbjct: 133 SAALHISRIPFEGPIAGVRVCKVGGEFVANPTYEERKDADLEIVMAGTKDAIVMVEGGAK 192 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFSKLEEEMSQMI 248 ++ E+V+ +A+ FGH + I KL + E I +D + LEEE S+ I Sbjct: 193 EVPEEVITEALFFGHEAIQEAIALQEKLRESIGVQKVEFEGINLDEELVRALEEECSERI 252 Query: 249 KEDLRVSCF-IPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 VS F I +K R K + + ++ + + E +N + F+ +++K++R Sbjct: 253 -----VSAFAIQDKKERNKTLSHILEEFIEKHGVPEELHFN---VKYFFKKLESKLMREK 304 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L + VR+DGR E +R IS ++ +R HG ++F RG TQA V VTLG ++ Q ++++ Sbjct: 305 ILAEGVRIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETI 364 Query: 367 S-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G FM+HYNF P + GE G P RREIGHG LA RA+ PV+P+ FPY +R+ Sbjct: 365 AEGEVFKRFMLHYNFPPFSGGEARSWGPPRRREIGHGALAERALEPVIPEEDDFPYIIRV 424 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPIS--KPVAGIAMGLVKDGDDFIILSDISGDE 483 VS+I ES+GS+SMATVCG SLAL DAGVPI K V+GIAMGL+K+GD ++ILSDI GDE Sbjct: 425 VSDILESNGSTSMATVCGGSLALFDAGVPIKGGKHVSGIAMGLIKEGDRYVILSDILGDE 484 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT G+T++QMD+KI GI++ IM AL+QAK GRL+IL +M + + E + Sbjct: 485 DHLGDMDFKVAGTREGVTSIQMDIKIKGITKEIMTEALKQAKEGRLYILEKMYEAIPEPK 544 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L + PR+ I +P ++ VIG GG ++ I E+T K+ + ++G V + S I Sbjct: 545 KELSPYAPRIVIYKVPEEKAALVIGPGGSNVKKIYEETEVKIWVGEEGKVFLTGYSDEAI 604 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A EMI ++ EV ++Y+G+V +V +G FV + GL+H+S+++ + + D Sbjct: 605 QKAIEMIENLVKDVEVGQVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMA-QPIKHAGDK 663 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 GDTV VK+L+ DD G+ K + +D ++ P Sbjct: 664 YSVGDTVKVKVLEVDDMGRPKFTTMGLDGSSSPP 697 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++Y+G+V +V +G FV + GL+H+ + ER +V + GD V VK+ + Sbjct: 702 EVGEVYEGKVTRVEPYGVFVEILPGKVGLLHVDNMK-ERTRDAREVFEVGDKVKVKVFEL 760 Query: 678 DDRGKIKLSMKV 689 D+RG+ KL+ K+ Sbjct: 761 DERGRPKLTDKI 772 >gi|331084721|ref|ZP_08333809.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410815|gb|EGG90237.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 721 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 292/693 (42%), Positives = 425/693 (61%), Gaps = 19/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A Q++GA L YGETVVL+T ++G DFFPL+V Y+E+ Sbjct: 32 EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 91 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 92 YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ++ A +S +PF+GP QV I+G++V NP + S L L V+ T+D V+ Sbjct: 152 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 211 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +++AI H + VI+ I + C KE S + EE+ + Sbjct: 212 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFE 268 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 IK E++ + F EK VR + I +++K+ F +E+ W E GE + + Q Sbjct: 269 AIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLELLGEALYQY---Q 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+ L+ R HGS++F RG TQ + TL + Sbjct: 325 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPLSE 384 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 385 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAE 444 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV + DD+I+L Sbjct: 445 FPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYIVL 504 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +IL+E M Sbjct: 505 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVM 564 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK ++E R +G + P++ M I P +I +V+G GK I I+EQTG K++I DDG V + Sbjct: 565 SKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 624 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +E A +MI I E ++ +G+VV + +FGAFV F ++G+VHIS++S E Sbjct: 625 CGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKISKE 684 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ DV+ GD V V L D G++ S+K Sbjct: 685 RIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIK 717 >gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756] gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756] gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 695 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 291/695 (41%), Positives = 425/695 (61%), Gaps = 19/695 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T +DG DFFPL+V Y ER Sbjct: 6 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 66 YAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ AS A +S +PF+GP+ QV I+G++V NP + + S L L V+ T++ V+ Sbjct: 126 LTAMLGASLATSISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSDLALTVASTKEKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ ED +++AI H + VI + C K +S + EE+ Sbjct: 186 MIEAGANEVPEDRMIEAIFAAHELNQKVIAFFDTIVAECGKPKHEYES---CAIPEELFD 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 IKE ++ + F EK +R I + +K+ F ++ W GE + + Q Sbjct: 243 AIKEIVPPAEMEQAVFTDEKQIREDNIRQITEKLEEAF-IDNEEWLSLLGEAIYQY---Q 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+V LL R HGS++F RG TQ V TL + Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQICTVTTLAPLSE 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L ++ +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 359 AQRLDGLDESETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV DD+++L Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGDTDDDYLVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +I++E M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAISATKKARTYIIDEIM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K +SE R ++GEF P++ M I P +I +V+G GK I I+EQTG K++IDD+G+V I Sbjct: 539 NKAISEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDIDDEGSVSI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + +E A ++I +I E ++++G+V+ + +FGAF+ F ++GLVHIS+++ E Sbjct: 599 CGTEKTAMEKAAKIIHTIVTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGLVHISKIAKE 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV K DV+ GD V L D G+ S++ V Sbjct: 659 RVNKVEDVLSLGDVVKAVCLGKDKMGRFSFSIRDV 693 >gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1] gi|257096699|sp|B1ZS98|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1] Length = 730 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 291/700 (41%), Positives = 426/700 (60%), Gaps = 29/700 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + TG IA+ ++GAV GET V T ++ K GQD+FPLTV+Y+E+ A G+ PG Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 GY +RE RP+E EIL SR+ DR RPLF + + NE Q+I + DL + + + AS Sbjct: 74 GYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVNGAS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AAL +S +P+ GP+ +V I G++V NP +D+ SLDL G + +LM+E A+Q Sbjct: 134 AALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEKDMLMIEGSADQ 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKE 250 + E+ ++A+ FGH +P+++AI +L C K P+V + + + E + + E Sbjct: 194 IPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEARTIIERV--VPTE 251 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVML 308 L + F EK VR + LK++ + ++E + + ++ VFED+Q K R +L Sbjct: 252 RLIEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQYKAYRKTVL 311 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367 ++ VR DGR + +R + AQVG+L R HGS++F RGDTQ I + TLG +D Q +D+L+ Sbjct: 312 ERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTG 371 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G + F++HYNF P + GE R P RREIGHG LA R++ PVLP FPY++R+VS Sbjct: 372 GVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYSIRVVS 431 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----KDG--DDFIILSDISG 481 EI S+GS+SMA++CG L+LMDAGVPI PVAGI+ GL+ DG + ++ ++DI G Sbjct: 432 EIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASDGSIEKWVTITDILG 491 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 +EDH G MDFK+AGT GIT Q+D+KI G+ I A+ QA+ R+ IL M L Sbjct: 492 EEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVMLGSLPA 551 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--DDDGTVKIASSS 599 R L ++ PR++ + I P++I +IG GGK IR I E TGA+++I DD G V + S++ Sbjct: 552 PRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDSGKVFVYSNN 611 Query: 600 LAEIEAAREMIRSITDVP----------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 + A + I S+ EV KIY G+V V +FG FV +GL H+ Sbjct: 612 AEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECTPGNEGLCHV 671 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688 S+L+ RV +T DVVK GD++ VK + D+R GK++LS K Sbjct: 672 SELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRK 711 >gi|325661686|ref|ZP_08150309.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471939|gb|EGC75154.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 4_1_37FAA] Length = 721 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 292/693 (42%), Positives = 425/693 (61%), Gaps = 19/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A Q++GA L YGETVVL+T ++G DFFPL+V Y+E+ Sbjct: 32 EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 91 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 92 YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ++ A +S +PF+GP QV I+G++V NP + S L L V+ T+D V+ Sbjct: 152 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 211 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +++AI H + VI+ I + C KE S + EE+ + Sbjct: 212 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFE 268 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 IK E++ + F EK VR + I +++K+ F +E+ W E GE + + Q Sbjct: 269 AIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLELLGEALYQY---Q 324 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+ L+ R HGS++F RG TQ + TL + Sbjct: 325 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPLSE 384 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 385 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAE 444 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV + DD+I+L Sbjct: 445 FPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYIVL 504 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +IL+E M Sbjct: 505 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVM 564 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK ++E R +G + P++ M I P +I +V+G GK I I+EQTG K++I DDG V + Sbjct: 565 SKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 624 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +E A +MI I E ++ +G+VV + +FGAFV F ++G+VHIS++S E Sbjct: 625 CGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKISKE 684 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ DV+ GD V V L D G++ S+K Sbjct: 685 RIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIK 717 >gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM 13280] gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM 13280] Length = 714 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 287/683 (42%), Positives = 426/683 (62%), Gaps = 14/683 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ E G +A+Q+ GA L G++ VL TVV + K+ DFFPLTV++ E+ YA G+ Sbjct: 12 GKTYVFEVGELAKQATGAALVKQGDSTVLTTVVVSKERKN-YDFFPLTVDFNEKMYAAGR 70 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGGYL+RE RP+E L +RMIDR IRP F ++NE QV+ + D ++ V+ ++ Sbjct: 71 IPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130 Query: 133 AASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189 AS A+ + G+PFEGP+ ++ D G++++NP +E + S LDL ++GT+D + MVE Sbjct: 131 GASLAMTIGGVPFEGPLACVRIGRDKETGEFIVNPTYEERENSDLDLELAGTRDFISMVE 190 Query: 190 LEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 A ++SE+ +L A+ FG C +E + + ++ PIV + EE+ Sbjct: 191 AGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVEEWERVNG--PIVKREYPLDQPVEEVH 248 Query: 246 QMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 I +++ + +K R ++ +LK+ + + F+ E E EI + ++ Sbjct: 249 DRIFAHYDEMAAALRDADKLSRQDKVAELKEAIKAEFTEEEQLVWEREIPVNLKKLEKTA 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R ++++ R+DGR + +R I + L HGS LF RG TQ + V++LG + Q Sbjct: 309 MRRMVVETGERVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQR 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D++ +M HYNF P TGE RMG P RREIGHG LA RA+ PVLP +FPY Sbjct: 369 LDTIEPVDGKRYMHHYNFPPYCTGETGRMGTPKRREIGHGNLAERALIPVLPDENEFPYA 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++ ++LSDI G Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSDIQGL 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKV GT+ GITA+QMD K G++ +I+ AL+QAK GR +IL++M +V+ Sbjct: 489 EDFLGDMDFKVTGTEKGITALQMDNKATGLTFDILRTALEQAKEGRAYILDKMLEVVPGP 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV + + Sbjct: 549 REETRTTAPKIQCITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGGVGES- 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + AA E I I VPEV + Y G+VV + FGAFV+ +DGL+HIS+++ RV K D Sbjct: 608 VAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRVEKVED 667 Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685 V+ GD V VK+++ DDRGKI L Sbjct: 668 VLNVGDEVKVKVIEIDDRGKISL 690 >gi|317057303|ref|YP_004105770.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7] gi|315449572|gb|ADU23136.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7] Length = 705 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 281/699 (40%), Positives = 440/699 (62%), Gaps = 19/699 (2%) Query: 1 MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF + T E +AGRP+ +ETG+ ++G+ YGETVV+A V + ++G DFFPL Sbjct: 1 MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+++E+ YAVG+IPG + +RE + ++ IL SR +DR IRPLF K +N+ V++ V+ Sbjct: 61 SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLA 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178 D ++SP + M+AA+ A+ +S +P+ GPV V Y++G+ VLNP L++ + L+L V Sbjct: 121 VDPDNSPEITGMIAAAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNELNLTV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 +G+ D ++M+E AN++ +D++L AI GH E K ++E I + K K +S + Sbjct: 181 AGSADKIVMIEAGANEIPDDLMLKAIETGHTEIKKMVEFIKGIQKEIGKPKFEFESMEVD 240 Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEI 291 L +E+ M+ ED++ + +K +R +M + + H ++E + Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNIR-------DARMQPIYDAVHEKYDEQYPDQGAML 293 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 V +Q K+VR + + K R+DGR + +R ++A+VG+L R HGS +F RG TQ + + Sbjct: 294 EEVLYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTI 352 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG D Q +D L +M YNF + GE P RREIGHG LA RA+ P Sbjct: 353 CTLGPVSDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVP 412 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDG 470 VLP +FPY +R VSE+ S+GS+S ++CGS+LALMDAGVPI +PVAGI+ GL+ K+ Sbjct: 413 VLPSVDEFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKED 472 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 ++ + DI G ED G MDFKV GT +GITA+Q+D+K+ G++ +I+ A ++ ++ R++ Sbjct: 473 GSWMTMVDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMY 532 Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL+E M K + E R ++ ++ P++ +P D+IR VIG GGKVI+ I + K++I + Sbjct: 533 ILDEIMLKAIPEVRPEVSKWAPKMLSTKVPVDKIREVIGSGGKVIQKISAECDVKIDISE 592 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG+V ++ + + A +I +I + PE+ IYKG+VV++M+FGAFV +DGLVHI Sbjct: 593 DGSVFVSGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHI 652 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S+L +RV K DVV GD + VK+++ DD+G+I LS K Sbjct: 653 SKLDNQRVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRK 691 >gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 745 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 271/685 (39%), Positives = 431/685 (62%), Gaps = 7/685 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGR L +ETG++A+ ++G+ L YG TVVL+T + + G DFFPL+V+Y+E+ YA Sbjct: 8 ELAGRDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYA 67 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 +GKIP G+++RE RP+E IL SR+IDR +RPLF K +N+ V V+ D +SP + Sbjct: 68 IGKIPRGFIKREGRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNASPEIA 127 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S A+ +S +P+ GP+ G Q+ I+GQ ++NP ++ Q + + ++GT++ + M+ Sbjct: 128 AMIGSSIAVAISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQMAVTLAGTEEKICMI 187 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247 E A+++ EDV+++A++ GH E + I + K +S ++ E+ Q Sbjct: 188 EAGADEVPEDVMMNALLAGHQEIQKTCRFIKSIVAEIGKPKFTYESAAVPEEIMTEVKQF 247 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 E ++ + +K R + ID L ++ + ++ + W +V++ ++ K VR + Sbjct: 248 AAEKMKQAVLAVDKNERDQNIDALTAEINEHLTAINEEWAAWTNDAVYQ-LEKKTVRNYL 306 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + R+DGR + +R +S G+L HGS LF RG TQ + + TLG Q +D L Sbjct: 307 FHEHRRVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLD 366 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + +M HYN +TGE +P RREIGHG LA R++ PVLP +FPY +R VS Sbjct: 367 NEKEKRYMHHYNMPGYSTGEAKPNRSPGRREIGHGALAERSLVPVLPSEEEFPYAIRTVS 426 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---KDGDDFIILSDISGDED 484 EI S+GS+S +VC S+LALMDAGVPI +PVAGI+ GL+ ++ +DF++ DI G ED Sbjct: 427 EIMMSNGSTSQGSVCASTLALMDAGVPIKRPVAGISCGLLVNEENDEDFLVFMDIQGIED 486 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESR 543 G MDFKVAGT GIT++Q+D+K+ G+S +++ AL ++GRL I+N+ + L R Sbjct: 487 FFGDMDFKVAGTTEGITSIQVDIKVDGLSYDVIRQALAITRKGRLQIINDIILPRLPGPR 546 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 +L ++ P++ ++IP D+IR VIG GGKVI I+ TG ++I++DG V I++ L + Sbjct: 547 AELSQYAPKILQLSIPVDKIREVIGQGGKVINKIIADTGVAIDIEEDGRVFISAVDLEQG 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A ++I I + PE +++ G+V ++M+FGAFV F ++GLVHIS+++ + V K D Sbjct: 607 NKALKIINGIVNDPEPGQVFTGKVTRLMNFGAFVEFLPGKEGLVHISKMAWQHVEKVEDC 666 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 VKEGD V VK+++ D +G+I LSM+ Sbjct: 667 VKEGDIVTVKVIEIDAQGRINLSMR 691 >gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer RA-YM] gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Riemerella anatipestifer RA-GD] Length = 711 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 298/699 (42%), Positives = 445/699 (63%), Gaps = 35/699 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G T++LATVV + G DF PLTV+Y+E+ A G+ Sbjct: 16 GREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGAAGR 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE++P+++E+L R++DR IRPLF + E QV+I+++ +D + P ++ + Sbjct: 76 IPGNFFRREAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISLISYDEKVMPDSLAGL 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFVSGTQDAVLMVEL 190 AASAA+ ++ +PF GP +V +G +NP + Q LD+ V T+D+++MVE Sbjct: 136 AASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETLQSGVELDIMVGATKDSIVMVEG 195 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQM 247 E ++++E +L+AI F H E K +EA +LA+ K F K E E + Sbjct: 196 EMDEITEQEMLEAITFAHQEIKTQVEAQERLAQKVGKA--------FPKREYCHETHDEE 247 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----------SEHSSWNEGEIVSV-FE 296 +K+ + + +KY + K++ FS +E + ++ V F Sbjct: 248 LKKQIWDYAY--QKYYDIAKNPSAKEERGEKFSAVVEEFLAQYTEEELEEKADLAKVYFH 305 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D+Q + VR ++L++ +R+DGR+++ +R I ++V L HGSS+F RG+TQ++ VTLG+ Sbjct: 306 DVQKEAVRQLILNENIRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGS 365 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D +DS+ F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P+ Sbjct: 366 LMDANRIDSVITQHDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKVMIPE- 424 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FI 474 + PYT+RIVS+I ES+GSSSMATVC +LALMDAG+P+ KPV+GIAMGL+ D + + Sbjct: 425 -ETPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESGKWT 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKV GT++GITA QMD+KI G++ +IM AL QAK GRLHIL E Sbjct: 484 VLSDILGDEDHLGDMDFKVTGTENGITACQMDIKIQGLTMDIMEQALMQAKNGRLHILGE 543 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592 M K +SE R + P++ +M IP D I VIG GGKVI+ + ++TG + I++ G Sbjct: 544 MLKTISEPRADVKPHAPKMVMMEIPKDFIGAVIGPGGKVIQQMQKETGTVITIEEKGEIG 603 Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++I+ + +I AA I IT +P V ++Y+G+VVKVMDFGAFV +GL+HIS+ Sbjct: 604 YIEISGTDREKINAAIAQINEITFIPIVGEVYQGKVVKVMDFGAFVQLAKGTEGLLHISE 663 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + +R K KEGD V VK + +DDR K+KLS KV+ Sbjct: 664 IDWKRTDKVP--YKEGDIVEVKFMGYDDRKKMKLSRKVL 700 >gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans PW2] gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans PW2] Length = 761 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/689 (41%), Positives = 430/689 (62%), Gaps = 12/689 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E G+ LE+G +A+Q+ GA L G+T L TVV + K+ DFFPLTV++ E Sbjct: 5 TRTFELYGKTYTLESGELAKQATGAALVKQGDTTALTTVVVSKERKN-YDFFPLTVDFNE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGG+L+RE R ++ L +RMIDR IRP F ++NE Q+++ + D + Sbjct: 64 KLYAVGRIPGGFLKREGRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQGS-LDLFVSGTQ 182 V+S + AS +L L G+PFEGP+ ++ +G++++NP +E + S LDL ++GT+ Sbjct: 124 IDVISTMGASLSLTLGGVPFEGPLACVRIGRSGDSGEFIVNPTYEEIEASDLDLVLAGTR 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 D + MVE A+++SE +L A+ FG + +E I +++ L+E Sbjct: 184 DFISMVEAGADEISEQDMLAAMEFGQRAIGAFCDEQLAFVDQWERENGPIQRREYP-LDE 242 Query: 243 EMSQMIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + ++ +++ + +K R +++ DLK ++ + F+ E E EI + Sbjct: 243 PVPEVHDRIFTHYDEMAAALADADKLSRVEKVADLKARITAEFTEEERIAWEREIPVNLK 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ + +RT++++ R+DGR ++ +R I + L HGS LF RG TQ + V+ LG Sbjct: 303 KLEKQAMRTMVVETGERVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGM 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D++ + +M YNF P +TGE RMGAP RREIGHG LA RA+ PVLP Sbjct: 363 LNESQRLDTIEPVEGKRYMHQYNFPPFSTGETGRMGAPKRREIGHGHLAERALLPVLPDE 422 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 ++FPY +R+VSE+ ES+GSSSMA+ C S LALMD GVPI +PV+GIAMGL+++ ++L Sbjct: 423 SEFPYAIRVVSEVLESNGSSSMASTCASCLALMDGGVPIKRPVSGIAMGLIQENGKTVVL 482 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI G ED LG MDFKV GT+ GITA+QMD K G++ +I+ AL+QA+ GR I +M Sbjct: 483 SDIQGIEDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRQALEQARAGRAFIRGKMV 542 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 VL E R Q PR+ +++P D+IR VIG GGKVIRGI ++TGA ++I +DGTV + Sbjct: 543 DVLPEPRSQTRSTAPRIVSVSVPVDKIREVIGSGGKVIRGIQDETGASIDIQEDGTVYVG 602 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + + +E A E I+ I VPE + + G+VV V FGAFV +DGL+HIS+++ R Sbjct: 603 GTGTS-VEDAVERIKLIVHVPEPGEEFTGRVVSVQPFGAFVSLLPGKDGLLHISRVAQGR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V K DV+ GD V V++L+ DDRGKI L Sbjct: 662 VDKVEDVLNIGDEVRVRVLEVDDRGKISL 690 >gi|283798318|ref|ZP_06347471.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1] gi|291073901|gb|EFE11265.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1] Length = 703 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/695 (41%), Positives = 432/695 (62%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GA YG+T VL+T ++G DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 67 AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP Q+ I+G++++NP + + S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 +E AN++ EDV++ AI H + +I+ I + C K E + + F+ + E Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 + Q E++ + F EK R + I + +++ F +E+ W GE + +E Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-AENEEWLSVLGEAIYQYE---K 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ LL R HGS +F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI PVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GIT++QMD+KI G++ I+ A+ + + RL+IL+E M Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V++E R ++G++ P++E + I P +I +V+G GKVI I+EQTG K++I+DDG V + Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + A I+ A +IRSI E ++ G VV++M+FGAFV +DG++HIS+LS +R Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 VAK DVV GD V VK+++ D G+I LSMK D Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694 >gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 721 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 293/709 (41%), Positives = 435/709 (61%), Gaps = 32/709 (4%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q+ GAV+ G+T +L T + K DF PL +Y+E+ Y Sbjct: 8 ITFDGREIRLTTGLYAPQAGGAVMIECGDTSLLVTAT-KTTKKQAADFLPLICDYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LI+R+IDR +RPLF ++E Q++ + + D V Sbjct: 67 AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 + + AS A +L+ +PF GP+ +V I ++LNP E ++G LD+ V+G+ + ++M Sbjct: 127 LGVTGASIATLLAEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPEGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245 +E ANQLSE ++AI FG+ EA+S+L K A+E ++ D K LE E Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVSELIK--AQENLLKDLGIKQVKPLEPEED 237 Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLK--------KKMVSYFSSEH-----SSWN 287 + + L +C P +K+ + K+ DL+ + + ++ +S N Sbjct: 238 KALATYLEKNCTKPIDLILKKFDQSKEERDLELDKIELEVQTKIDSLKDDNQLKVLTSEN 297 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346 E I S F+ + K++R+ ++++ R+DGRD + VR ISA G+L +R HGS+LF RG T Sbjct: 298 EKLIHSDFKKLTKKLMRSQIINEGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + TLGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RAI PVLP FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV+G AMGL Sbjct: 418 RAITPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G + IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ +++ A+++A+ Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSVISDAIKKARP 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RLHIL +M + + + + L PR+ I P+ I VIG GG+ I+GI E+T K++ Sbjct: 538 ARLHILEKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+D G V IAS A E A+++I +T +I+ G V +++ GAFV ++G+ Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGM 657 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VHISQLS RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706 >gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9215] gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 721 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 292/702 (41%), Positives = 428/702 (60%), Gaps = 18/702 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q+ G+V+ G+T +L T + K+ DF PL +Y+E+ Y Sbjct: 8 ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT-KTTKKEASDFLPLICDYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LISR+IDR +RPLF ++E Q++ + + D V Sbjct: 67 AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVPADV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +L +PF GP+ +V I ++LNP E ++G LD+ V+G+ D ++M Sbjct: 127 LAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-----LEE 242 +E ANQLSE ++AI FG+ +I++ L K + I + K LE+ Sbjct: 187 IEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQIKPSDPEEDKTLPSYLEK 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVSV 294 S+ I DL + F K R +++ +K + S S +S NE I S Sbjct: 247 NCSKAI--DLVLKKFDQSKEERDLELEKIKTETQSKIDSLKDDNEVRVLTSENEKLIHSD 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+ + K++R+ +++ R+DGR+ + VR I+A G+L +R HGS+LF RG TQ + T Sbjct: 305 FKKLTKKLMRSQIINDGKRVDGRELDEVRKITASAGILPKRVHGSALFQRGLTQVLSTTT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA RAI PVL Sbjct: 365 LGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV G AMGL+K+G D Sbjct: 425 PGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVGGTAMGLIKEGKDV 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ +I+ A+++A+ RLHIL Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTNKGITALQMDMKITGLPVSIISDAIKKARPARLHILE 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + + + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+D G V Sbjct: 545 KMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS A E A+++I +T +I+ G V +++ GAFV ++G+VHISQLS Sbjct: 605 TIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLS 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 665 EARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706 >gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] Length = 758 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 292/695 (42%), Positives = 438/695 (63%), Gaps = 26/695 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + LETG++A+Q+DGAV+ G T++LATVV + DF PL+V+Y+E+ +VG+ Sbjct: 13 GRVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLSVDYKEKFASVGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE + ++ EIL+SR++DR++RPLF Y ET V + + D ES P ++ + Sbjct: 73 FPGGFTRREGKSSDYEILVSRLVDRALRPLFPDDYHAETFVQVTLYSADEESMPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I G++V+NP + LD+ V T + ++MVE E Sbjct: 133 AASAALAVSDIPFHGPISEVRVARIQGEFVINPTASALKEADLDIMVGATYENIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++SE +LDAI F H K A +LA KE + E + +++D Sbjct: 193 MNEVSEKEMLDAIKFAHAAIKEQCVAQQELAAAVGKE-------KRTYCHEVNDEELRKD 245 Query: 252 LRVSCFI----------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + C+ K++R + +D+++ + ++ E + + D++ + Sbjct: 246 IWDKCYQKAYDVARQCNANKHLRGELLDNVRAEYLASLPEEEQIEKAMLVGRYYHDVEKE 305 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R ++LD+ VR+DGR +E +R I +VG L HGSS+F RG+TQ++ VTLGT+ DE+ Sbjct: 306 AMRRMILDEGVRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEK 365 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + F++HYNF P +TGE RREIGHG LA RA+ ++P+ FPY Sbjct: 366 IIDEATIQGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLALRALKRMIPE--DFPY 423 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479 T+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV GIAMGL+ D + +LSDI Sbjct: 424 TVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCAKYAVLSDI 483 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S IM AL+QAKRGR+HI++ +++ + Sbjct: 484 LGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEIMEQALEQAKRGRMHIMDIITETM 543 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIA 596 R L PR+ + I DQI +IG GGK+I+ I E++GA +NI+ + G V ++ Sbjct: 544 PAPREDLKPHAPRIVTVTIDKDQIGALIGPGGKIIQDIQEKSGATINIEEVGNKGIVDVS 603 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +++ I+ A IR+I PEV ++Y G V +M FGAF+ +DGL+H+S++ +R Sbjct: 604 ATNKESIDKALARIRAIVAKPEVGEVYDGIVKSIMPFGAFIEILPGKDGLLHVSEIDYKR 663 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + K DV+KEGD + VKLL+ D + GK++LS K + Sbjct: 664 IEKVEDVLKEGDHIQVKLLEVDPKTGKLRLSHKAL 698 >gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5] Length = 697 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 433/693 (62%), Gaps = 13/693 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VLAT + ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ ++ VM D E +P + Sbjct: 67 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDPECNPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S A +S +PF+GP QV I+G++++NP L + S L L V+ T++ V+M Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSDLQLTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 +E AN++ ED +++AI H + +I+ I ++ C KE +S + L +E+ + Sbjct: 187 IEAGANEIPEDKMIEAIYKAHEVNQEIIKFIDQIVAECGKEKHSYESCAVPQELFDEIKK 246 Query: 247 MI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVV 303 ++ E++ V+ F +K R I ++ K+ F +++ W GE V + Q K V Sbjct: 247 IVPPEEMEVAVFSDDKQTRENNISEITDKLKEAF-ADNEEWLAVLGEAVYQY---QKKTV 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L R DGR+ +R ++A+ ++ R HGS++F RG TQ V TL + Q + Sbjct: 303 RKMILKDHKRPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQICTVTTLAPLTEAQRL 362 Query: 364 DSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +FPY Sbjct: 363 DGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYA 422 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDIS 480 +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV + DD+I+L+DI Sbjct: 423 IRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGETDDDYIVLTDIQ 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539 G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +IL E M K + Sbjct: 483 GLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEKCI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 + R +GEF P++ + I P +I +V+G GK I I+E+TG K++I DDG V I + Sbjct: 543 DKPRTTVGEFAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICGTD 602 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ A+ MI IT E +I+ G+VV + +FGAF+ F ++G+VHIS++S +R+ + Sbjct: 603 QKGMDEAKRMIEIITTEFEAGQIFTGRVVSIKEFGAFLEFAPGKEGMVHISKISKQRINR 662 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 DV+ GD V V L D G+I SMK V + Sbjct: 663 VEDVLTLGDKVKVICLGKDKMGRISFSMKDVPE 695 >gi|295092781|emb|CBK78888.1| polyribonucleotide nucleotidyltransferase [Clostridium cf. saccharolyticum K10] Length = 703 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 285/695 (41%), Positives = 432/695 (62%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GA YG+T VL+T ++G DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 67 AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP Q+ I+G++++NP + + S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 +E AN++ EDV++ AI H + +I+ I + C K E + + F+ + E Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 + Q E++ + F EK R + I + +++ F +E+ W GE + +E Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-AENEEWLSVLGEAIYQYE---K 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ LL R HGS +F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI PVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GIT++QMD+KI G++ I+ A+ + + RL+IL+E M Sbjct: 480 DIQGLEDFFGDMDFKVGGTYKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V++E R ++G++ P++E + I P +I +V+G GKVI I+EQTG K++I+DDG V + Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + A I+ A +IRSI E ++ G VV++M+FGAFV +DG++HIS+LS +R Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 VAK DVV GD V VK+++ D G+I LSMK D Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694 >gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae LPCoLN] Length = 694 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 312/688 (45%), Positives = 437/688 (63%), Gaps = 22/688 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ L ETG+IARQ++GAVL GET V A+ L D DF PL V+YQE+ + GK Sbjct: 13 GKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLRVDYQEKFSSTGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++RE RP+E EIL+SR+IDRS+RP F + QV+ V +D + P +++ Sbjct: 72 TLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLAIC 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASAAL +S +P V G ++ I+ Q+V+NP E S LDL ++GT++A+LM+E Sbjct: 132 AASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGTENAILMIEGH 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEEMSQMI 248 + +E+ VLDAI FGH I I K ++ +E + SK+ S L E+ + Sbjct: 192 CDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--IGKSKNLSAVYPLPTEVLTAV 245 Query: 249 KE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQA 300 KE D F I +K V ++++ ++ E SS+N I + + +++ Sbjct: 246 KECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN---IKAACKTLKS 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++ D+++R DGR TVR I+ + L RTHGS LF RG+TQ + V TLG+ Sbjct: 303 DTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q + L+G + F + Y F P + GEV R+G+P RREIGHG+LA +A+ LP +A FP Sbjct: 363 QRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RI S ITES+GSSSMA+VCG LALMDAGVPIS P+AGIAMGL+ D IILSDIS Sbjct: 423 YTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILSDIS 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFK+AG+ GITA QMD+K+ GI+ IM AL QAK+G ILN M++ LS Sbjct: 483 GLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALS 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++I+D G V I++SS Sbjct: 543 APKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDINDLGVVSISASSA 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + I A+E+I + EV K Y+G+V V+ FGAFV ++GL HIS+ S +R+ Sbjct: 603 SAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISEFSRQRIENI 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDVVKEGD + VKLL +++G++KLS K Sbjct: 663 SDVVKEGDIIDVKLLSINEKGQLKLSHK 690 >gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] Length = 716 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 275/684 (40%), Positives = 425/684 (62%), Gaps = 6/684 (0%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ GRPL +E G++A + + + YGET VL V +DG DFFPL+V ++E+ Y Sbjct: 18 MDLCGRPLTIEVGKVAELASASAMVKYGETTVLVAVTVSPRPRDGIDFFPLSVEFEEKLY 77 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVG+IPG ++RRE RP+ +L SR+IDR +RPLF ++N+ + VM D + SP V Sbjct: 78 AVGRIPGSFMRREGRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDYDCSPEV 137 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ASA + S +PF GP+ +V Y +GQ VLNP ++ + S +D+ V+ T + V+M Sbjct: 138 AAMIGASACVSYSEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSRMDVTVAATAEKVVM 197 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 +E A+++ ++++ I+ H E K I+ I+++ K + + F++ L +++ Sbjct: 198 IEAGADEIPDEIMYAGIVKAHEEIKKQIDFINQIVAEIGKPKMEYEHAQFNQELFDKIVD 257 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 ++ + + +K VR + + + K + E+ ++ + Q K+V+ Sbjct: 258 EFMDEAKAAMDTDDKNVRETRWNAMIDKWHEKYLEEYPDMDQ-YLEEFTYKFQKKIVKAW 316 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L+ R+DGR +R ++A+VG+L R HGS LF RG TQ + V TL T Q +D++ Sbjct: 317 LLEGH-RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTI 375 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +M HYNF P + GE + +RRE GHG LA RA+ PVLP +FPY +R+V Sbjct: 376 WEEDEKRYMHHYNFPPYSVGEARAPRSTNRREYGHGALAERALVPVLPSVEEFPYAIRVV 435 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDH 485 SE+ S+GS+S ++CGS+LALMDAGVPI PVAGI+ GL++D + F DI G ED Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDNGGFTTFIDIQGVEDF 495 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESRL 544 G MDFKVAGT +GITA+QMD+K G++ I+ AL+ + R IL+E M +S R Sbjct: 496 HGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKEALEITRDARYAILDEIMLPCISAPRA 555 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ ++ P++ M I PD+IR VIG GG VI+ I ++GA V+I+DDGT+ IAS + + Sbjct: 556 EVSKYAPKMITMKIDPDKIREVIGKGGSVIQKITAESGATVDIEDDGTIHIASPNAEACD 615 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AA++MI +I VP+V ++Y G+VV+++ FGAFV +DG+VHIS+L+ RV K DVV Sbjct: 616 AAKKMIETIVFVPQVGELYYGKVVRILQFGAFVELAPGKDGMVHISKLADRRVEKVEDVV 675 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688 GD +WVK+ D DD+G++ LS + Sbjct: 676 NIGDMIWVKVTDIDDKGRVNLSYR 699 >gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] Length = 743 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 287/683 (42%), Positives = 426/683 (62%), Gaps = 14/683 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ LE G +A+Q+ GA L G++ VL TVV + K+ DFFPLTV++ E+ YA G+ Sbjct: 12 GKTYVLEAGELAKQATGAALVKQGDSTVLTTVVVSKERKN-YDFFPLTVDFNEKMYAAGR 70 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGGYL+RE RP+E L +RMIDR IRP F ++NE QV+ + D ++ V+ ++ Sbjct: 71 IPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130 Query: 133 AASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189 AS A+ L G+PFEGP+ ++ D G++++NP +E D LDL ++GT+D + MVE Sbjct: 131 GASLAMTLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELAGTRDFISMVE 190 Query: 190 LEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 A ++SE+ +L A+ FG C +E +++ ++ IV + EE+ Sbjct: 191 AGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVAEWEQVNGA--IVKREYPLDEPNEEVH 248 Query: 246 QMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 I +++ + +K R ++ +LK+ + + F+ E + E EI + ++ Sbjct: 249 DRIFAHYDEMAAALRDADKLARQDKVAELKEAIKAEFTEEEQAAWEREIPVNLKKLEKTA 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R ++++ R+DGR + +R I + L HGS LF RG TQ + V++LG + Q Sbjct: 309 MRRMVVETGERVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQR 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D++ + +M HYNF P TGE RMG+P RREIGHG LA RA+ PVLP +FPY Sbjct: 369 LDTIEPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHGNLAERALIPVLPDENEFPYA 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++ ++LSDI G Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSDIQGL 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED LG MDFKV GT+ GITA+QMD K G++ +I+ AL+QAK GR IL++M +V+ Sbjct: 489 EDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRTALEQAKEGRAFILDKMLEVVPGP 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV + + Sbjct: 549 REDTRATAPKIQSITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGGVGDS- 607 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + AA E I I VPEV + Y G+VV + FGAFV+ +DGL+HIS+++ RV K D Sbjct: 608 VAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRVEKVED 667 Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685 V+ GD V V +++ DDRGKI L Sbjct: 668 VLNVGDEVKVTVIEIDDRGKISL 690 >gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila ATCC BAA-835] gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila ATCC BAA-835] Length = 714 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/695 (39%), Positives = 429/695 (61%), Gaps = 11/695 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +H+VE P+ +ETG++AR +DGAV+ G+TVVL TVV +K+GQ FFPL+V Y Sbjct: 3 IHSVECNVGTNPITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G PGGY +RE RPTE EIL RM DR +RP+F K Y +TQVI ++ D E Sbjct: 63 KEKAAAAGMFPGGYFKREGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSADGE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + P ++S+ ASAA ++S LPF PV +V I+GQ+V+NP + + S LDL +GT+ Sbjct: 123 NEPDILSINGASAACVVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQLDLVFAGTK 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241 D V+M+E AN+L E+ + A+ K + E +L +C KE + +L Sbjct: 183 DQVIMIEGSANELPEEDFIAALRVAQENVKVICEKQEELRAVCGKEKRAYELCLAKPELL 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E ++ + + + + P K R K++ L+ ++ + H + ++ VFE IQ K Sbjct: 243 EIGYEIAGDRIEEAIYAPSKVERQKKVGALRDEVEAAIKERHPEATDFDVEQVFEYIQKK 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDE 360 R +++K R DGR + +R ++A+V +L HGS++F RG+T ++ + TL E+ Sbjct: 303 AFRISIMEKDKRADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEER 362 Query: 361 QYVDSLSGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 QY+D+ +G+ F++HYNF P + G+ R G +RREIGHG LA R+I PV+P +F Sbjct: 363 QYMDNYTGSVNEKRFILHYNFPPFSVGDTGRFGGQNRREIGHGALAERSIAPVVPGEQEF 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------F 473 PY +R+ SEI ES+GS+SMA+VC +++L+ AGVP+ +PVAGI++GLV + +D + Sbjct: 423 PYAIRVSSEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQNDQHEITSY 482 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 L DI G ED G MDFK+ GT G+T Q+D+K+ GI +I+ A+ AK GR +L Sbjct: 483 KTLLDIIGSEDFYGDMDFKLCGTSEGVTGYQLDLKLPGIPLSILEEAIHVAKAGRTDVLK 542 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M++ ++ + Q+ PR+E IP D+I +IG GGK I+ I ++GA +NI++DGTV Sbjct: 543 VMNEAIA-APAQMSPNAPRIETTKIPADRIGELIGPGGKNIKAIQAESGADINIEEDGTV 601 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I ++ ++ A E++ + E+ ++Y G++V FGAF+ +DGL+HIS+L+ Sbjct: 602 HIYAAKQEGLDRALELVTRMFKTIEIGELYTGKIVSTTTFGAFMEVLPGKDGLIHISELA 661 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R AKT DVV GD V K + DD+G++K+S++ Sbjct: 662 EGRTAKTEDVVSVGDVVTAKCIGIDDKGRVKMSIR 696 >gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC 27755] gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC 27755] Length = 707 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/693 (41%), Positives = 429/693 (61%), Gaps = 15/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T ++G DFFPL+V Y ER Sbjct: 18 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERM 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 78 YAVGKIPGGFNKREGKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++G++V+NP ++ S L L V+ T++ V+ Sbjct: 138 LTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSDLALTVASTREKVI 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 M+E AN++ E ++DAI H + VI+ I + C K E + + F+ ++ Sbjct: 198 MIEAGANEVPEQQMIDAIFKAHEVNQEVIKFIDTIVAECGKPKHSYESFAVPEELFAAMK 257 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E ++ E++ + F +K R + I + +K+ F +++ W +V++ Q K Sbjct: 258 EVVT---PEEMEEAVFTDDKQTREENIRVVTEKLEEAF-ADNEEWLAILPDAVYQ-YQKK 312 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L R DGR + +R ++A+V L+ R HGS++F RG TQ + TL + Q Sbjct: 313 TVRKMILKDHKRPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTLAPLSEAQ 372 Query: 362 YVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D L + +M HYNF + GE P RREIGHG LA RA+ PVLP A FP Sbjct: 373 RLDGLDEAETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEADFP 432 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSD 478 Y +R VSE ES+GS+S A+VC SS+ALM AGVPI VAGI+ GLV DD+++L+D Sbjct: 433 YAIRTVSETFESNGSTSQASVCASSMALMAAGVPIKSAVAGISCGLVTGDTDDDYLVLTD 492 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537 I G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + ++ RL+I++E MSK Sbjct: 493 IQGLEDFFGDMDFKVAGTHEGITAIQMDIKIHGLTRAIIEEAIAKTRKARLYIMDEVMSK 552 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R ++GE+ P++ M I P +I +V+G GK I I+EQTG K++I DDG V I Sbjct: 553 AINEPRAEVGEYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 612 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + +E AR++I +I E ++ +G+V+ + +FGAFV F ++G+VHIS++S ERV Sbjct: 613 TDATGMEQARKLIYTIVTDFEAGQVLEGKVISIKEFGAFVEFAPGKEGMVHISKISKERV 672 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GDTV V L D G+ SMK V Sbjct: 673 NHVEDVLTLGDTVKVVCLGKDKMGRFSFSMKDV 705 >gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis DSM 18603] gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis DSM 18603] Length = 715 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 18/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G+T++LATVV K+G DF PL+V+YQE+ A G+ Sbjct: 15 GRTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLSVDYQEKYAATGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RPLF Y + QV+I+++ D P ++ + Sbjct: 75 IPGGFLRREARLSDYEVLISRLVDRALRPLFPDDYHADVQVMISLISADKNIMPDCLAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+G+ V+NP + D ++ SL+ V+G+ + MVE E Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSDLERASLEFIVAGSASDINMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEEEMSQMIKE 250 +++ E +++AI F H+ K ++A +LA AK + + S + S E++ + + Sbjct: 195 CSEIQEAELVEAIKFAHDAIKIQVQAQVELAAEVAKAKVKRVYSHEHSN--EDLKKQVFA 252 Query: 251 D-----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 D ++ K R + +L+K++V+ + ++ F D+Q VR Sbjct: 253 DTYDKVYAIAASASSKDERSEAFKNLQKEVVASLGEDADDVSKFLAKKYFHDVQYDAVRN 312 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD+ R+DGR + +R I ++VG L HGS++F RG+TQA+ VTLG ++DEQ +D Sbjct: 313 LVLDEGKRLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLGAKDDEQMIDG 372 Query: 366 --LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 ++G Q+ F++HYNF +TGEV RREIGHG LA R++ VLP + PYT+ Sbjct: 373 AFINGYQK--FLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKQVLPDENENPYTI 430 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISG 481 RIVS+I ES+GSSSMATVC +LALMDAG+ I PV+GIAMGL+ + G + ILSDI G Sbjct: 431 RIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITNPEGTKYAILSDILG 490 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT+ GI A QMD+KI G+S ++ AL QAK GRLHILNEM K + Sbjct: 491 DEDHLGDMDFKVTGTEKGIVACQMDLKINGLSYEVLSKALDQAKEGRLHILNEMKKTIDI 550 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASS 598 R PR+ M I + I VIG GGK+I+ + ++GA ++I D+ G ++I Sbjct: 551 PRDDYKAHAPRIVSMRIDKEFIGAVIGPGGKIIQEMQRESGATISIEEKDNQGIIQIFGD 610 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + I+ A IR I PEV +IY+G+V +M FGAFV +DGL+HIS++ +R+ Sbjct: 611 NKESIDKAVTRIRQIVAKPEVGEIYEGKVRSIMPFGAFVEIMPGKDGLLHISEIDHKRIE 670 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + + GD V VKLLD D +GK+KLS K + Sbjct: 671 TMDGIFEIGDEVRVKLLDVDKQGKLKLSRKAL 702 >gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae CWL029] gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae J138] gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae AR39] gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae CWL029] gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae AR39] gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae J138] Length = 694 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 312/688 (45%), Positives = 437/688 (63%), Gaps = 22/688 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ L ETG+IARQ++GAVL GET V A+ L D DF PL V+YQE+ + GK Sbjct: 13 GKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLRVDYQEKFSSTGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++RE RP+E EIL+SR+IDRS+RP F + QV+ V +D + P +++ Sbjct: 72 TLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLAIC 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASAAL +S +P V G ++ I+ Q+V+NP E S LDL ++GT++A+LM+E Sbjct: 132 AASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGTENAILMIEGH 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEEMSQMI 248 + +E+ VLDAI FGH I I K ++ +E V SK+ S L E+ + Sbjct: 192 CDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--VGKSKNLSAVYPLPAEVLTAV 245 Query: 249 KE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQA 300 KE D F I +K V ++++ ++ E SS+N I + + +++ Sbjct: 246 KECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN---IKAACKTLKS 302 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R ++ D+++R DGR TVR I+ + L RTHGS LF RG+TQ + V TLG+ Sbjct: 303 DTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMA 362 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q + L+G + F + Y F P + GEV R+G+P RREIGHG+LA +A+ LP +A FP Sbjct: 363 QRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFP 422 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RI S ITES+GSSSMA+VCG LALMDAGVPIS P+AGIAMGL+ D IILSDIS Sbjct: 423 YTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILSDIS 482 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFK+AG+ GITA QMD+K+ GI+ IM AL QAK+G ILN M++ LS Sbjct: 483 GLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALS 542 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 + L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++D G V I++SS Sbjct: 543 APKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVNDLGVVSISASSA 602 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 + I A+E+I + EV K Y+G+V V+ FGAFV ++GL HIS+ S +R+ Sbjct: 603 SAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISECSRQRIENI 662 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 SDVVKEGD + VKLL +++G++KLS K Sbjct: 663 SDVVKEGDIIDVKLLSINEKGQLKLSHK 690 >gi|295116235|emb|CBL37082.1| polyribonucleotide nucleotidyltransferase [butyrate-producing bacterium SM4/1] Length = 703 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 284/695 (40%), Positives = 432/695 (62%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GA YG+T VL+T ++G DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 67 AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP Q+ I+G++++NP + + S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 +E AN++ EDV++ AI H + +I+ I + C K E + + F+ + E Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 + Q E++ + F EK R + I + +++ F +++ W GE + +E Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-ADNEEWLSVLGEAIYQYE---K 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A++ LL R HGS +F RG TQ + + TL + Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI PVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GIT++QMD+KI G++ I+ A+ + + RL+IL+E M Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V++E R ++G++ P++E + I P +I +V+G GKVI I+EQTG K++I+DDG V + Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + A I+ A +IRSI E ++ G VV++M+FGAFV +DG++HIS+LS +R Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 VAK DVV GD V VK+++ D G+I LSMK D Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694 >gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae TW-183] gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae TW-183] Length = 694 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 313/700 (44%), Positives = 441/700 (63%), Gaps = 23/700 (3%) Query: 2 FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 + T+ I G+ L ETG+IARQ++GAVL GET V A+ L D DF PL Sbjct: 1 MNFQTISINLTEGKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLR 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ + GK GG+++RE RP+E EIL+SR+IDRS+RP F + QV+ V + Sbjct: 60 VDYQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + P +++ AASAAL +S +P V G ++ I+ Q+V+NP E S LDL ++ Sbjct: 120 DGQVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT++A+LM+E + +E+ VLDAI FGH I I K ++ +E + SK+ S Sbjct: 180 GTENAILMIEGHCDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--IGKSKNLSA 233 Query: 240 ---LEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNE 288 L E+ +KE D F I +K V ++++ ++ E SS+N Sbjct: 234 VYPLPAEVLTAVKECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN- 292 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + + +++ +R ++ D+++R DGR TVR I+ + L RTHGS LF RG+TQ Sbjct: 293 --IKAACKTLKSDTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQT 350 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TLG+ Q + L+G + F + Y F P + GEV R+G+P RREIGHG+LA +A Sbjct: 351 LAVCTLGSEAMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKA 410 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + LP +A FPYT+RI S ITES+GSSSMA+VCG LALMDAGVPIS P+AGIAMGL+ Sbjct: 411 LSHALPDSATFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLIL 470 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D IILSDISG EDHLG MDFK+AG+ GITA QMD+K+ GI+ IM AL QAK+G Sbjct: 471 DDQGAIILSDISGLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGC 530 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 ILN M++ LS + L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++ Sbjct: 531 NDILNIMNEALSAPKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVN 590 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D G V I++SS + I A+E+I + EV K Y+G+V V+ FGAFV ++GL H Sbjct: 591 DLGVVSISASSASAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCH 650 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 IS+ S +R+ SDVVKEGD + VKLL +++G++KLS K Sbjct: 651 ISECSRQRIENISDVVKEGDIIDVKLLSINEKGQLKLSHK 690 >gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 712 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 295/696 (42%), Positives = 431/696 (61%), Gaps = 18/696 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +T I + GR + + G +A Q+ V T GET +L T + G DF PL V+Y+ Sbjct: 4 YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSILVTATRQPG-RPGVDFMPLLVDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPGGYLRRE RP E LISR+IDR IRPLF + +++ QV+ + D Sbjct: 63 ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+ ++ AS A+ + +PF GPV +V + +++LNP E + G LDL V+G D Sbjct: 123 PPDVLCILGASLAIHGARIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDLDLVVAGCAD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238 V+MVE ANQL E V++AI FG + +++A ++ P+ + + + + Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAIQELLKAQQQVLADLNITPVELPPPPKNEELIA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290 +EE+ + I+ LR F+ +K R +Q+++LK K+ + N E Sbjct: 243 FVEEQAQEGIRSILR--QFL-DKTSREQQLEELKAKLEAQIQERPEGDPLRLYLLENPKE 299 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + + F+ + K++R +L + VR+DGR + VR +S +VGL+ R HGS+LF RG TQ + Sbjct: 300 LDNQFKALLKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLS 359 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 + TLGT D Q +D L +M HYNF + GE +P RREIGHG LA RA+ Sbjct: 360 ITTLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGETRPSRSPGRREIGHGALAERALV 419 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP+ +FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVPI PV+G+AMGL+K+G Sbjct: 420 PVLPKEEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLIKEG 479 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D+ IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++ A++QAK GR Sbjct: 480 DEVRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEQAIRQAKAGREF 539 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL++M + ++ R QL + PR+ + P+ I +IG GGK +RGI E TGAKV+I DD Sbjct: 540 ILDKMLETIAAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKTVRGITEATGAKVDISDD 599 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 GT+ ++SS + EAAR MI ++ E ++Y G+V +++ GAFV F ++G++HIS Sbjct: 600 GTITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHIS 659 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 QL+ RV + D V D V VK+ D +G+I L+ Sbjct: 660 QLAEYRVGRVEDEVAVEDEVVVKVRSIDHKGRINLT 695 >gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC 29176] gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC 29176] Length = 695 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 291/695 (41%), Positives = 426/695 (61%), Gaps = 19/695 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T +DG DFFPL+V Y ER Sbjct: 6 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLSVEYNERM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 66 YSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++G++V NP + S L L V+ T++ V+ Sbjct: 126 LTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSDLALTVASTKEKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E A ++ ED +++AI H + VI + C K+ + + F+ + +E+ Sbjct: 186 MIEAGAKEVPEDKMIEAIFAAHELNQKVITFFDTIVAECGKKK--HEYQSFA-VPQELFD 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQ 299 I+E ++ + F +K R + I + +K+ F +++ W GE V + Q Sbjct: 243 AIQEIVTPAEMEEAVFTDDKQTREENIRVITEKLEEAF-ADNEEWLAKLGEAVYQY---Q 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+V L+ R HGS++F RG TQ V TL + Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQICTVTTLAPLSE 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L T+ +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 359 AQRLDGLDETETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEAE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV + DD+++L Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKSAVAGISAGLVTGETDDDYLVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +I++E M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK ++E R ++GEF P++ M I P +I +V+G GK I I+E+TG K++IDDDG V I Sbjct: 539 SKAIAEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEETGVKIDIDDDGNVSI 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + +E A + I +I E ++++G+VV + +FGAFV F ++G+VHIS+LS Sbjct: 599 CGTEKENMEKAAKYIHTIVTDYEAGQLFEGKVVSIKEFGAFVEFAPGKEGMVHISKLSKN 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 RV K DVV GD V V L D G+ SMK V Sbjct: 659 RVEKVEDVVSLGDVVKVVCLGKDKMGRFSFSMKDV 693 >gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9515] gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 721 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 292/703 (41%), Positives = 433/703 (61%), Gaps = 20/703 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q++GAV+ G+T +L T K+ DF PL +Y+E+ Y Sbjct: 8 ITFDGREIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNK-KEAADFLPLICDYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LI+R+IDR +RPLF ++E Q++ + + D V Sbjct: 67 AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPADV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +L +PF GP+ +V + ++LNP E ++G LD+ V+G+ + ++M Sbjct: 127 LAVTGASLATLLGEIPFYGPMAAVRVGLLGDDFILNPSYREIEKGDLDIIVAGSPEGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------MCAKEPIVIDSKDFSKLE 241 +E ANQLSE ++AI FG+ +I+A L K + EP V D+ + LE Sbjct: 187 IEAGANQLSEQDTIEAIDFGYEAVTELIKAQENLLKDLGIKQVKPSEPEV-DNTLAAYLE 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293 + ++ I DL + F K R +++ +K ++ S S +S NE I S Sbjct: 246 KNCTKPI--DLVLKKFDQSKEERDLELEKIKLEVHSKIDSLKDDNQLKVLTSENEKLIHS 303 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 F+ + K++R+ +++ R+DGRD + VR ISA+ G+L +R HGS++F RG TQ + Sbjct: 304 DFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTT 363 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA RAI PV Sbjct: 364 TLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPV 423 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV+G AMGL+K+G + Sbjct: 424 LPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKE 483 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ +I+ A+++A+ RLHIL Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSIISDAIKKARPARLHIL 543 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M + + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+D G Sbjct: 544 EKMQDAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGI 603 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS A E A+++I +T +I+ G V +++ GAFV ++G+VHISQL Sbjct: 604 VTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQL 663 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 S RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 664 SEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706 >gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149] gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149] Length = 718 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 289/698 (41%), Positives = 426/698 (61%), Gaps = 19/698 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T +DG DFFPL+V Y ER Sbjct: 28 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERL 87 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 88 YAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 147 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++G++V NP + + S L L V+ T++ V+ Sbjct: 148 LTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKEKVI 207 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +++AI H + VI I + C K S + EE+ + Sbjct: 208 MIEAGANEVPEAQMIEAIFAAHELNQKVIAFIETIVAECGKAKHEYTS---CAVPEELFE 264 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 IKE ++ + F +K R + I + +K+ F +E+ W GE V + Q Sbjct: 265 AIKEIVPPAEMEEAVFTDDKQTREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---Q 320 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+ L+ R HGS++F RG TQ V TL + Sbjct: 321 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSE 380 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP A+ Sbjct: 381 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 440 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV + DD+++L Sbjct: 441 FPYAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGETDDDYLVL 500 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +IL+E M Sbjct: 501 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVM 560 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K ++E R ++G + P++ M I P +I +V+G GK I I+EQTG K++I DDG V I Sbjct: 561 NKAIAEPRKEVGTYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSI 620 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + +E A ++I +I E ++++G+V+ + +FGAF+ F ++G+VHIS++S E Sbjct: 621 CGTEKEAMEKAAKLIATIVTDFEAGQLFEGKVISIKEFGAFLEFAPGKEGMVHISKISKE 680 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RV K DV+ GD V V L D G+ SMK V ++ Sbjct: 681 RVNKVEDVLNIGDVVKVVCLGKDKMGRFSFSMKDVAED 718 >gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 710 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/680 (42%), Positives = 429/680 (63%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ ++ G+ A Q++G G+T +L T V ++G DFFPL ++QE+ YAVGK Sbjct: 12 GKDFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE + ++ LISR +DR +RPLF + Y N+ Q+I V+ D ++ P ++ + Sbjct: 72 IPGGFLRREGKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF+GPV V + + ++NP +E ++ +L+L V+G + A+ MVE Sbjct: 132 GASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTLELTVAGKKGAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN+LSE +L+A++ E + + I + KE + + + L+ ++S+ ++D Sbjct: 192 ANELSESDMLEAMLLALEEIGHISDFIQSIIDDIGKEKAEVSEIEETDLDRKISEDFEQD 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I ++++ + + E+ +E EI ++I K VR ++ K Sbjct: 252 IKDSIRTTDKTEREDNIFRIEEEAKAKYLEEYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGRD +R +SA+ GLL R HGS LF RG TQ + VVTLG+ D Q +D L+ + Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPADVQIIDGLNREEI 370 Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 MH YNF P G+V + P RREIGHGRLA RA+ PVLP ++FPYT+R+VSE+ Sbjct: 371 TKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALVPVLPDESEFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI+ ++ +L A R+ IL+ + + R + ++ Sbjct: 491 FKVAGTRDGITALQMDMKISGITREVLEKSLADAHDARMRILDVIETAIKSPRADISDYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + I P+++R+VIG GGK I I++ TG K+ +DDG + +AS + + A EMI Sbjct: 551 PRLYTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASDNGESGKKAIEMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 ++I P+ IY G+VV++M+FGAFV ++GL+HISQ+ RV K DV+ GD V Sbjct: 611 KAIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDVLSVGDEV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690 >gi|227872010|ref|ZP_03990395.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus F0268] gi|227842153|gb|EEJ52398.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus F0268] Length = 695 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 287/694 (41%), Positives = 438/694 (63%), Gaps = 17/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ R+ QS+GA L YG+T VL+T +DG DFFPL+V Y+E+ Y Sbjct: 1 MELAGRTLTVDVDRVCAQSNGAALMHYGDTTVLSTCTASAKPRDGIDFFPLSVEYEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGK PGG+ +RE R ++N IL +R+IDR +RPLF K Y+N+ + V+ D ++SP + Sbjct: 61 SVGKFPGGFKKREGRASDNAILTARVIDRPMRPLFPKDYRNDVLLNNLVLSVDQDASPEL 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 ++M+ +S + LS +PF+GP Q+ + G++V+NP E S L L V+ T++ V+M Sbjct: 121 LAMLGSSLSTCLSDVPFDGPCATTQIGMVGGEFVVNPGNGEKAVSDLLLTVASTKEKVIM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQ 246 +E AN+L E +++AI H+ + +I + + C KE + S +L +M + Sbjct: 181 IEAGANELPEAKMIEAIYLAHDVNQQIIGFFESIIEECGKEKHSYVSSAIPEELFAKMKE 240 Query: 247 MIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED----IQAK 301 ++K E++ + F +K R + L +++V F + E +++ D + K Sbjct: 241 VVKPEEMEKAVFTDDKAERDANVSLLSERLVEAFQDDE------EALAILPDAIYQYEKK 294 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L R DGR + +R + A+V LL R HGS++F RG TQ + + TL + Q Sbjct: 295 TVRKMILKDHKRPDGRAIDEIRKLEAEVDLLPRVHGSAMFKRGQTQIMNITTLAPLSEVQ 354 Query: 362 YVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 V+ L+ + +H YNF + GE P RREIGHG LA +A+ PVLP +FP Sbjct: 355 KVEGLNEFETEKRYLHQYNFPGYSVGEAKASRGPGRREIGHGALAEKALIPVLPSVEEFP 414 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDD-FIILSD 478 Y +R VSE ES+GS+SMA+ C S ++LM AGVPI KPVAGI+ GLV D DD +++L+D Sbjct: 415 YAIRSVSETMESNGSTSMASTCASCMSLMAAGVPIKKPVAGISCGLVTGDSDDEYLVLTD 474 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537 I G ED G MDFKV GT+ GITA+QMD+KI G++ I+ A+++A+ RL I+N M + Sbjct: 475 IQGLEDFFGDMDFKVTGTEDGITAIQMDIKIHGLTRPIVEEAIRRAREARLFIMNGVMKE 534 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R +L + P++ M+I P++I +VIG GK I GI+E+TG K++IDD+GTV I+ Sbjct: 535 AIAEPRAELSPYAPKILTMSINPEKIGDVIGKQGKTINGIIEETGVKIDIDDNGTVSISG 594 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 ++L ++E A+++I SI + E +I++G VV++MDFGAFV +DG++HIS+LS +RV Sbjct: 595 TNLPDLERAKKIIESIVNDIEPGQIFEGTVVRMMDFGAFVQLSPNKDGMIHISKLSDQRV 654 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 K DVV GD V VK+L+ D G+I LSM+ D Sbjct: 655 NKVEDVVHIGDKVRVKVLEVDKMGRINLSMRPQD 688 >gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans DSM 12260] gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans DSM 12260] Length = 756 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 290/699 (41%), Positives = 433/699 (61%), Gaps = 27/699 (3%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T ++ AGR L ETG++A+Q++ +V A YGETV+L T V ++G DFFPL V+Y+ Sbjct: 3 QTFTLDLAGRTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y+ GKIPGG+++RE RP+E IL RM+DRSIR LF +N+ V+ V+ D ++ Sbjct: 63 ERFYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQN 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 +P+V+++ AASAAL LS +P+EGP+ ++ ++G V+NP E +LDL V+G + Sbjct: 123 APNVLAINAASAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLSTLDLLVAGHEG 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKD- 236 + MVE A ++SE +++DA+ H E + ++ I ++ K P I D Sbjct: 183 GITMVEAGAQEVSEALLVDALELAHREIRRIVAFILEMRAAAGKPKRDFPAPARIPEIDQ 242 Query: 237 --FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 S+L+ E+ Q ++ + +K R + + +K V F+ + + +G + V Sbjct: 243 WVLSELDGEIYQAVQ--------VHDKMERAAALSKVSQKAVEQFAEAYPN-AKGYVAGV 293 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E+ +R ++L++ R DGR + +R I + GLL + HGS+LF RG+TQ++ V TL Sbjct: 294 VEERVKDGLRRLLLEEGRRADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTL 353 Query: 355 G-TREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 G ED+Q +D L + + F++HYNF P + GEV M P RREIGHG LA RA+ P+ Sbjct: 354 GMVGEDDQILDGLKHDEPSKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPM 413 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 P A FPY +R+VS+I ES+GSSSMA+VCG SL++MDAGVP+ K VAG+AMGLV DG Sbjct: 414 FPDEAAFPYVVRVVSDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSR 473 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G EDH G MDFKV GT G+TA+QMD K GGI+ I+ AL QA+ GR+ IL Sbjct: 474 VRILTDIQGLEDHYGDMDFKVTGTRDGVTALQMDNKAGGITRAILEQALSQAREGRMKIL 533 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + M L R ++ PR+ + I P++IR VIG GGK IR IV QTGAKV+++DDG Sbjct: 534 DIMDGALQTPREEISPNAPRILTLTIDPEKIREVIGPGGKTIRSIVAQTGAKVDVEDDGR 593 Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 + +A+ + EAA ++ ITD+ + + + G V +++ FG FV ++GL+H+ Sbjct: 594 IYVAALTY---EAANHAVKIITDLTREVQAGETFLGTVTRMLSFGVFVEVLPGKEGLLHV 650 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 S++ST + + D GD V V + + DD ++ LS + Sbjct: 651 SEVSTYHIPRLEDAFSIGDQVLVVVKEIDDMKRVNLSRR 689 >gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 729 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 296/693 (42%), Positives = 436/693 (62%), Gaps = 21/693 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G ++L TG++A+Q+DG+V+ G+T++LATVV R K G DF PL+V+YQE+ A G+ Sbjct: 15 GTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y +TQV+I+++ D + P ++ + Sbjct: 75 IPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+GQ V+NP+L D ++ +L+ V+G+ + MVE E Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFVVAGSAQDIGMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN++SE +++AI F H K I A +LA + ++++ E + ++E Sbjct: 195 ANEISEAEMVEAIAFAHEAIKKQIAAQVELANLVG----ATTKREYN--HEPSNPELREA 248 Query: 252 LRVSCFI---------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + + K+ R ++ ++ ++ E + F D+Q Sbjct: 249 IFAATYDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDA 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++LD+ +R+DGRD TVR I ++V L HGS++F RG+TQ++ VTLG ++DEQ Sbjct: 309 VRNLVLDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQM 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D N F++HYNF +TGEV P RRE+GHG LA R++ VLP A+ PYT Sbjct: 369 IDGAFINGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYT 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480 +R+VS+I ES+GSSSMATVC +LALMDAGV + PV+GIAMGL+ D + ILSDI Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDIL 488 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT GI A QMD+KI G+ ++ AL QAK RLHIL EM+K +S Sbjct: 489 GDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTIS 548 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597 R PR+ + I + I VIG GGK+I+ + +TGA ++I D+ G V+I + Sbjct: 549 APREDYKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFA 608 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A I+ A IR+I PE+ Y+G+V +M FGAFV +DGL+HIS++ +R Sbjct: 609 DNKAAIDEASARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + KEGD V VKLLD D +GK+KLS K + Sbjct: 669 ETMDGIFKEGDKVTVKLLDIDKQGKMKLSRKAL 701 >gi|227486455|ref|ZP_03916771.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus lactolyticus ATCC 51172] gi|227235636|gb|EEI85651.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus lactolyticus ATCC 51172] Length = 718 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 289/680 (42%), Positives = 425/680 (62%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G ++ G+ A Q++GA L G+T +L T V ++G DFFPL ++QE+ YAVGK Sbjct: 12 GYDFEVTIGKYAEQANGACLIQSGDTTLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE + ++ LI+R +DR +RPLF + Y N+ Q+I V+ D + P ++ + Sbjct: 72 IPGGFLRREGKASDEATLIARQMDRPLRPLFPEDYYNDVQIIATVLSMDHDHLPDPLTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF GPV V ++G+ V+NP D + L+L V+G + A+ MVE Sbjct: 132 GASIALGISDIPFNGPVGACMVGKVDGKLVVNPNEEDRKKSQLELTVAGRKGAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN+L E +L+A++ +E + + I + ++ + ++L+ +S+ +ED Sbjct: 192 ANELDESEMLEAMLLALDEIGDISDFIQTIIDDIGLPKKEVEVHEETELDRLISEAFEED 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I ++++ F + +E EI ++I K VR ++ K Sbjct: 252 IKSSIRTTDKTEREDNIFRIEEEAKEKFLEAYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR+ +R +SA+ G+L R HGS LF RG TQ + +VTLG+ D Q +D L+ Sbjct: 311 IRPDGRELTEIRPLSAEAGVLPRVHGSGLFQRGQTQVLSIVTLGSPADSQLIDGLNIEDV 370 Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 MH YNF P G+V + P RREIGHG LA RA+ PVLP FPYT+R+VSE+ Sbjct: 371 EKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGHLAERALVPVLPDEKDFPYTMRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI+E ++ +L AK R IL+ + + R +L E+ Sbjct: 491 FKVAGTRDGITALQMDMKISGITEEVLRQSLADAKDARFRILDVIEAAIDAPRAELSEYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + I P+++R+VIG GGK I I++ TG K+ +DDG + +AS+ A + A EMI Sbjct: 551 PRLYTIDIDPEKVRDVIGSGGKNINKIIDATGVKIETEDDGHITVASNDGASGKKAIEMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 ++I P+ IY+G VV++M+FGAFV ++GL+HISQ++ RVAK D +K GD V Sbjct: 611 KAIVTDPKPGDIYEGTVVRLMNFGAFVEIAIGKEGLLHISQIANHRVAKVEDELKVGDKV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 TVKVTEIDRQGRINLSRKAL 690 >gi|325265390|ref|ZP_08132114.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5] gi|324029391|gb|EGB90682.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5] Length = 695 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/695 (41%), Positives = 423/695 (60%), Gaps = 19/695 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A+Q++GA L YG+T VL T ++G DFFPL+V Y ER Sbjct: 6 EMELAGRTLRVDVGRVAKQANGAALMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 66 YSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++G++V NP +D + L V+ T++ V+ Sbjct: 126 LTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKDISDMALTVASTKEKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E ++DAI H + VI I + C K S + + EE+ + Sbjct: 186 MIEAGANEVPEAQMIDAIFAAHELNQKVIAFIETIVAECGKPK---HSYESCAVPEELFE 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 IKE ++ + F +K R + I + K+ F +E W GE V + Q Sbjct: 243 AIKEIVTPAEMEEAVFTDDKQTREENIRLITAKLEEAF-AEKEEWLAVLGEAVYQY---Q 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L + R DGR + +R +SA+ L+ R HGS++F RG TQ V TL D Sbjct: 299 KKTVRKMILKDQKRPDGRAIDQIRALSAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSD 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP ++ Sbjct: 359 AQRIDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSESE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+++L Sbjct: 419 FPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYLVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R IL+E M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K ++E R ++G + P++ M I P +I +V+G GK I I+EQTG K++I DDG V + Sbjct: 539 NKTIAEPRPEVGPYAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + A ++ A +MI IT E ++++G+V+ + +FGAF+ F ++G+VHIS++S E Sbjct: 599 CGTEQAGMDEAMKMIAVITTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISKE 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R+ K DV+K GD V V L D G+ SM+ V Sbjct: 659 RINKVEDVLKLGDIVKVVCLGKDKMGRFSFSMRDV 693 >gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] Length = 705 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/685 (41%), Positives = 441/685 (64%), Gaps = 26/685 (3%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLAT-VVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 P+ +ETG A+ SDGAV+ G+T VL T VV + L+D DF PL+V+Y+E++ A GKI Sbjct: 14 PIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQD-IDFMPLSVDYREQSSAWGKI 72 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PGG+++RE +PT+ E+L+SR+IDR IRPLF + + ++ + + D + P V+++ Sbjct: 73 PGGFVKREGKPTDREVLVSRVIDRPIRPLFPEGFFHDVVITALTLSADDKYDPDVLAITG 132 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192 ASAAL +S +PFEGP+ G +V I G++V NP +E Q + L++ ++ ++D+++MVE A Sbjct: 133 ASAALHISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKADLEIILAVSKDSIIMVEGGA 192 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKE 250 ++ E+V +A+ FG K +I A +L +E + + F L +E+ +++E Sbjct: 193 KEVDEEVFANALYFGLEAGKELISAQEEL-----REKVGVPKMSFEGIHLPQEIKDLMEE 247 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKK------MVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 F E+ ++ +I D +++ ++ F H E ++ ++ + +K+ Sbjct: 248 ------FCTERILKTFEIQDKRERKENTSAILREFIERHQIPEELHFKVGYHYKKLISKL 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R +L++ VR+DGR E +R IS ++ +R HGS++F RG TQA VTLG+ + Q Sbjct: 302 MRQKVLNEGVRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEAQL 361 Query: 363 VDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 V+S+ G FM+HYNF P +TGE G P RREIGHG LA RAI P++P +FPY Sbjct: 362 VESIYEGEVFKRFMLHYNFPPFSTGEAKPWGPPRRREIGHGALAERAIEPLIPPEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 +RIVS I ES+GS+SMATVC SLAL DAGVPI K VAGIAMGL+ +G+ ++ILSDI G Sbjct: 422 IIRIVSNILESNGSTSMATVCAGSLALFDAGVPIKKHVAGIAMGLIMEGERYVILSDILG 481 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DED LG MDFKVAGT GIT++QMD+KI G+ + IM+ +L QAKRGRL+IL +M + + E Sbjct: 482 DEDQLGDMDFKVAGTKDGITSVQMDIKIKGLKKEIMIESLMQAKRGRLYILEKMYEAIPE 541 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + PR+EI+ +P ++ +IG GGK ++ I E+TG V + + G V + + S + Sbjct: 542 PRKELSPYAPRIEIITVPEEKAMLIIGPGGKTVKDIKEKTGTTVWVLEGGKVSLTAPSKS 601 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I+AA+E+I ++ EV K+Y+G+V +V +G FV + GL+H+S++ V Sbjct: 602 AIDAAKEIIENLIRDVEVGKVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMEG-YVKDVR 660 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLS 686 V GDT+ VK+L+ D++G+ KL+ Sbjct: 661 AVFSVGDTLKVKVLEVDEQGRAKLT 685 >gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium spinosum DSM 4136] Length = 707 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 428/699 (61%), Gaps = 16/699 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +HT+ + ETG++A+ +DGAV G+T+V+ T V +K+GQDFFPL+V Y Sbjct: 3 IHTITAALPNGDITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEY 62 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A GK PGGY +RE RPTE EIL RM DR +RPLF K Y +TQ++ ++ D E Sbjct: 63 KEKAAAAGKFPGGYFKREGRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVALLLSADGE 122 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + ++S+ ASAAL +S +PF GPV +V +NGQ+VLNP + S LDL G + Sbjct: 123 NDADIISINGASAALCVSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLVYVGNK 182 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238 V+M+E AN+L E + A+ F + ++ E +K K+ + P+++ + Sbjct: 183 SEVIMIEGAANELPEAEFIKALAFAQEHVQVLVAVQEELRAKAGKVKREVPLMLVKDELL 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++ E++ + + + P K R K + L+ ++ + + + EI F+ + Sbjct: 243 EIAYEVA---GSRIEGAIYRPSKVERSKAVGALRDEVEAAIKARYPESGNFEISQAFDYL 299 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q K R +LDK+ R DGR + +R +S + GL+ R+HGS+LF RG+TQA+ + TL + Sbjct: 300 QKKAFRVAILDKQTRADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLD 359 Query: 359 DEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + Q +D+ +G + F++HYNF P + GE R G +RREIGHG LA R++ PV+P + Sbjct: 360 EAQEMDNYAGGETTKRFILHYNFPPFSVGETGRFGGQNRREIGHGALAERSVEPVVPSSE 419 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD----- 472 FPY +R+ SE+ ES+GS+SMA+VC +AL+DAGVP+ +PVAGI++GLV + D Sbjct: 420 DFPYAMRVSSEVMESNGSTSMASVCSGVMALLDAGVPLKRPVAGISVGLVSEYDANNQMS 479 Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 ++ + DI G EDH G MDFK+ GT+ G+T Q+D+K+ GI +I+ A+ +A GR +I Sbjct: 480 RYLTMLDIIGSEDHFGDMDFKLCGTELGVTGFQLDLKLPGIPLSILNEAIAKAVTGRTNI 539 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L M ++ + L EF PR+E I PD+I +IG GGK I+ I ++GA ++I+DDG Sbjct: 540 LEVMKSAIAAPK-SLSEFAPRIEKTKINPDKIGELIGPGGKNIKAIQAESGADISINDDG 598 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV I +SS +E A E++ + EV K Y G+VV +FGAF+ G +DGL+HIS+ Sbjct: 599 TVLIYASSKEALERALELVNNTVGEVEVGKNYTGRVVSTTNFGAFMSLGGKKDGLIHISE 658 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 L+ RV DVVK GD V K + DD+G++KLS K V Sbjct: 659 LADFRVNVVEDVVKVGDVVTAKCIGVDDKGRVKLSRKAV 697 >gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium TAV2] gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium TAV2] Length = 747 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 297/709 (41%), Positives = 431/709 (60%), Gaps = 37/709 (5%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E G +K TG +A+ ++GAV + GET V ++K GQDFFPLTV+Y+E+ Sbjct: 7 VEVPGTNIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLTVDYREKYS 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+ PGGY +RE +P+E EIL SR+ DR RPLF + + NE QV+ ++ D + Sbjct: 67 AAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVVGLLLSADQLHEADI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 + ASAAL +S +P+ GP+ +V I+GQ+V NP +++ SLDL GT+ +LM Sbjct: 127 AMVNGASAALAISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSSSLDLIYVGTEKDMLM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA----KMCAKEPIVIDSKDFSKLEEE 243 +E A+Q+ ED ++A+ F H +P+I AI +LA K A+ +V + + E Sbjct: 187 IEGSADQIPEDRFVEALEFAHQAIQPIIAAIKELAAKVGKPKAQFALVTAKPEARAIIER 246 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAK 301 + + + + F EK VR ++ LK + + +E N +I VFED+Q K Sbjct: 247 VVPIARVSEAIFGF--EKQVRGANVNALKVEAEAALKAELGEGNYAPHDISIVFEDLQYK 304 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 R +L++ +R D RD++T+R ++++VG L R HGS+LF RGDTQ +V TLG ++ Q Sbjct: 305 AYRATVLERGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQ 364 Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D L+ G F++HYNF P + GE R G P RREIGHG LA R++ PVLP FP Sbjct: 365 DMDGLTGGATSKSFILHYNFPPYSVGETGRFGNPGRREIGHGALAERSLVPVLPPEDVFP 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----DG--DDFI 474 YT+R+VS+I S+GS+SMA++CG LALMDAGVPI PVAGI+ GL+ DG D ++ Sbjct: 425 YTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKDDGSIDKWV 484 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ++DI G+EDH G MDFK+AGT SGIT Q+D+KI G+ I A+ QA+ R+ IL Sbjct: 485 TITDILGEEDHFGDMDFKLAGTTSGITGFQLDLKIKGLPIEIARTAIFQARDARVEILKA 544 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--DDDGT 592 M + R L + PR++ + I P++I +IG GGK IR IVE TGA+++I DD G Sbjct: 545 MLGAIPAPRKALSTYAPRIQTIQIDPEKIGLLIGPGGKTIRRIVETTGAQIDIADDDSGK 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVP------------EVNKIYKGQVVKVMDFGAFVHFC 640 V I S++ A M R+I+++ EV KIY G+V V +FGAFV Sbjct: 605 VFIYSNN------ADAMNRAISEIDGLCGGSGGGAQIEVGKIYTGRVSGVKEFGAFVECL 658 Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688 ++GL HIS+L+ RV +T DVVK GD++ VK + D+R K++LS + Sbjct: 659 PGKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERSNKVRLSRR 707 >gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] Length = 721 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 296/704 (42%), Positives = 424/704 (60%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T S ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ Q++ M D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +++G+PF+GP+ +V + +VLNP E ++G LDL V+GT + Sbjct: 123 PADVLAVTGASLATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFS 238 V+MVE ANQL E V++AI FG+ +I+A + K E ++ +D+ + Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQAILKEAGIEQVIPTTPEVDATLPT 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGE 290 LE+ ++ I E L+ F K R ++D ++ S N Sbjct: 243 YLEKNCTKAIGEVLK--QFDQTKGERDDKLDAIRTSTAETIQGLKDDDPVRVAVSTNGKA 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R ++ R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LPNSFKALTKKLMRQQIVKDGKRVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ + ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ N + A+ QA+ RL Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVNTVADAVNQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMMEAIDTPRQGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+ +I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 SGIVTIASHDGAAAEEAQRIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704 >gi|331091291|ref|ZP_08340132.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 2_1_46FAA] gi|330404738|gb|EGG84277.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 2_1_46FAA] Length = 696 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 287/692 (41%), Positives = 427/692 (61%), Gaps = 13/692 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A Q++GA L YGETVVL+T ++G DFFPL+V Y+E+ Sbjct: 6 EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 66 YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ++ A +S +PF+GP QV I+G++V NP + S L L V+ T+D V+ Sbjct: 126 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 M+E AN++ ED +++AI H + VI+ I + C K S +L E M Sbjct: 186 MIEAGANEVPEDKMIEAIFAAHEVNQQVIQFIDTIVAECGKPKHEYTSCAVPEELFEAMK 245 Query: 246 QMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 +++ E++ V+ F EK VR + + +++K+ F +++ W E GE + + Q K Sbjct: 246 EIVTPEEMEVAVFTDEKQVREENLRVIREKLEEAF-ADNEEWLEILGEALYQY---QKKT 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L R DGR + +R ++A++ L+ R HGS++F RG TQ V TL + Q Sbjct: 302 VRKMILKDHKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPLSEAQR 361 Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +FPY Sbjct: 362 IDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479 +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+++L+DI Sbjct: 422 AIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDDDYLVLTDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538 G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + K+ R +IL+E M Sbjct: 482 QGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVMHNA 541 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E R ++G + P++ M I P +I +V+G GK I I+EQTG K++I D+G+V + Sbjct: 542 IAEPREEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDEGSVSVCGV 601 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 +E A +MI I E ++ +G+V+ + +FGAF+ F ++G+VHIS++S ER+ Sbjct: 602 DAKAMEEAMKMIAIIVTDFEAGQVLEGKVISIKEFGAFLEFAPGKEGMVHISKISKERIN 661 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD V V L D G+I SMK V Sbjct: 662 HVEDVLTLGDKVKVVCLGKDKMGRISFSMKDV 693 >gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 712 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 446/700 (63%), Gaps = 17/700 (2%) Query: 3 DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + H +IE+ R L LETGRIA+Q+DG+V+A G+T+VL+T S+ + +FFPLTV Sbjct: 4 EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 62 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+E+ A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF + ++ V+ V+ Sbjct: 63 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + V++ V +SAALMLSG PF GP +V ++G Y++NP + + ++ +DL V+G Sbjct: 123 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 182 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 +DA++MVE EA ++SE+ +++A+ H + + E +L + A EP + + ++ Sbjct: 183 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEWE-ADRV 240 Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 E++ Q ++E+ +V+ I Y + I DLK + V + S EG S Sbjct: 241 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 300 Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 D +V +R +++++ R+DGRD VRD+ +VG L R HGS++F RG+TQ + Sbjct: 301 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +TLGT +D Q VD + F +HY F P + GE S + P RREIGH LA RA+ P Sbjct: 361 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ +FPYT+RI +++ ES+GSSSMA+VC SLALMDAGVPI KPVAGIAMGLV++ D Sbjct: 421 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G EDHLG MDFK+ GT GITA QMDMKI G+S ++M+ AL+Q++ R HI Sbjct: 481 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590 L+ M + ++E R +L PR+ + I PD+I VIG GGKV++ + E+T ++ ++++ Sbjct: 541 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 600 Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 G V IA+++ + EAA E I+ I VPE + Y G V + DFGAFV + GL+H Sbjct: 601 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 660 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +S++ + V D ++ GD V V LL+ D GK++L+ K Sbjct: 661 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 700 >gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM 10507] gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM 10507] Length = 745 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 432/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VL+T ++G DFFPL+V Y+E+ Y Sbjct: 54 MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 113 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+ + VM D E +P + Sbjct: 114 AVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPECNPEI 173 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ + +S +PF+GP QV ++G++++NP L + + S L L V+ T++ V+M Sbjct: 174 PAMLGSAISTCISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISDLQLTVASTREKVIM 233 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN+L ED +++AI H+ + +I+ I K+ + C KE S + + EE+ Q Sbjct: 234 IEAGANELPEDKMIEAIYLAHDVNQEIIKFIDKIVEECGKEK---HSYESCAVPEELFQA 290 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ V+ F EK +R + I + K+ F +++ W E GE + + Q Sbjct: 291 IKEIVPPEEMEVAVFADEKQIRDENIRQITDKLEEKF-ADNEEWLEVLGEAIYQY---QK 346 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V ++ R HGS++F RG TQ V TL + Sbjct: 347 KTVRKMILKDHKRPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQICTVTTLAPLSEA 406 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 407 QRLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEF 466 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV + DD+++L+ Sbjct: 467 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISAGLVTGETDDDYLVLT 526 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +IL E M Sbjct: 527 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVME 586 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + E R +G + P++ + I P +I +V+G GK I I+++TG K++I DDG V + Sbjct: 587 KCIHEPRTSVGPYAPKIVQIQIDPQKIGDVVGQRGKTINTIIDETGVKIDITDDGAVSVC 646 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + +++ A +I+ IT E +++ G+VV + +FGAFV F ++G+VHIS++ ER Sbjct: 647 GLNQKDMDEAVRLIKVITTDFEAGQVFTGKVVSIKEFGAFVEFAPGKEGMVHISKICKER 706 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + + DV+ GD V V L D G+ SMK V Sbjct: 707 INRVEDVLTLGDKVKVVCLGKDKMGRFSFSMKDV 740 >gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella chromatophora] gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella chromatophora] Length = 724 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 299/714 (41%), Positives = 433/714 (60%), Gaps = 22/714 (3%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+VL G+T VL T+ S ++G DF PLT +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQASGSVLVECGDTAVLVTITRSNS-REGVDFLPLTCDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE+RP E ILI+R+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRRENRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V++ AS A +++ +PF GP+ +V + ++LNP E ++ LDL V+GT D Sbjct: 123 PPDVLAATGASIATLIAKIPFHGPMATVRVGLLGDDFILNPSYREIERSDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE ANQL+E V++AI FG+ +I+A +K+ + E V DS F+ Sbjct: 183 GVVMVEAGANQLAEQDVIEAIDFGYEAVVELIKAQNKILQDMGIEYVKPEERVEDSTVFN 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGE 290 LE E S+ I + L + K R Q+D +K ++ +S ++ N Sbjct: 243 YLERECSKAIIDVL--GQYGKTKKERDSQLDTVKLQIGEKINSLKEDDTVRVAANTNAKL 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 S ++++ K++R +++D R+DGR +R I + VG+L +R HGSSLF RG TQ + Sbjct: 301 FNSSYKNLTKKIMRGLIVDTGKRIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPATEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGVLAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY LR+VSE+ S+GS+SM VC +LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 APVLPDKENFPYVLRVVSEVLSSNGSTSMGAVCSGTLALMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 G++ IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+ + A+ QA+ RL Sbjct: 481 GEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLEMETIAEAINQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + + R L PR+ I + I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIDKPREVLSPHAPRLLSFRIDSELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+ +I +T + ++G V +++ GAFV ++G++HI Sbjct: 601 GGVVTIASHDGAAAEEAQRIIEGLTRRVSEGETFQGAVTRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN----TGKPIV 699 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q+ T +PIV Sbjct: 661 SQLSESRVEKVDDVVKVGDKVTVRVREIDNRGRINLTLRGVPQDNSHSTQEPIV 714 >gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM 13855] gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM 13855] Length = 722 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 446/700 (63%), Gaps = 17/700 (2%) Query: 3 DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + H +IE+ R L LETGRIA+Q+DG+V+A G+T+VL+T S+ + +FFPLTV Sbjct: 14 EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 72 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+E+ A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF + ++ V+ V+ Sbjct: 73 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 132 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + V++ V +SAALMLSG PF GP +V ++G Y++NP + + ++ +DL V+G Sbjct: 133 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 192 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 +DA++MVE EA ++SE+ +++A+ H + + E +L + A EP + + ++ Sbjct: 193 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEW-EADRV 250 Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 E++ Q ++E+ +V+ I Y + I DLK + V + S EG S Sbjct: 251 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 310 Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 D +V +R +++++ R+DGRD VRD+ +VG L R HGS++F RG+TQ + Sbjct: 311 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 370 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +TLGT +D Q VD + F +HY F P + GE S + P RREIGH LA RA+ P Sbjct: 371 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 430 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ +FPYT+RI +++ ES+GSSSMA+VC SLALMDAGVPI KPVAGIAMGLV++ D Sbjct: 431 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 490 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G EDHLG MDFK+ GT GITA QMDMKI G+S ++M+ AL+Q++ R HI Sbjct: 491 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 550 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590 L+ M + ++E R +L PR+ + I PD+I VIG GGKV++ + E+T ++ ++++ Sbjct: 551 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 610 Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 G V IA+++ + EAA E I+ I VPE + Y G V + DFGAFV + GL+H Sbjct: 611 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 670 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +S++ + V D ++ GD V V LL+ D GK++L+ K Sbjct: 671 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 710 >gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] Length = 708 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 290/701 (41%), Positives = 426/701 (60%), Gaps = 16/701 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRESRP E LI+R+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+++ AS A +L+ +PF GP+ +V + +VLNP E ++ LDL V+GT Sbjct: 123 PPDVLAVTGASMATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPQ 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FS 238 V+MVE ANQL E V++ I FG+ +I+A L K E + +++ + Sbjct: 183 GVIMVEAGANQLPEQDVIEGIDFGYEAVSELIKAQQALLKDLGIEQVFPEARSDDPTLPA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSE---HSSWNEGEIV 292 LE+E S I E L+ F K R ++D +K ++ ++ + + ++ + Sbjct: 243 FLEKECSDAIGEVLKQ--FSLTKAERDAKLDAIKAEVGEKIAALAEDDPIRTAASGKAFG 300 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVV 351 + ++ + K++R ++ + R+DGR+ + VR I A G+L +R HGS+LF RG TQ + Sbjct: 301 NSYKGLTKKLMRAQIVGEGKRVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSC 360 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q +D L+ + ++ HYNF P +TGE M +P RREIGHG LA RA+ P Sbjct: 361 ATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERALVP 420 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP FPY LR+VSE S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+G+ Sbjct: 421 VLPAKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGE 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++ + A+ QA+ RLHI Sbjct: 481 EVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAVGTVAEAVNQARPARLHI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D G Sbjct: 541 LEKMLEAIDKPRDTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V IAS A E A+ +I +T +++ G V +V+ GAFV ++G++HISQ Sbjct: 601 IVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFTGGVTRVIPIGAFVEILPGKEGMIHISQ 660 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 LS RV K DVV GD V V++ + D+RG+I L+++ V Q Sbjct: 661 LSEARVEKVEDVVNVGDQVTVRVREIDNRGRINLTLRGVPQ 701 >gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787] gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787] Length = 696 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 283/693 (40%), Positives = 428/693 (61%), Gaps = 19/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A Q++GA L YGETVVL+T ++G DFFPL+V Y+E+ Sbjct: 6 EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 66 YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ++ A +S +PF+GP QV I+G++V NP + S + L V+ T+D V+ Sbjct: 126 LTAMLGSAIATAISDIPFDGPTSTTQVGMIDGEFVFNPNAAQRAVSDMQLTVASTRDKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +++AI H + VI+ I + C KE S + EE+ Sbjct: 186 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFV 242 Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299 I+ E++ V+ F EK VR + + +++K+ F +E+ W E GE + + Q Sbjct: 243 AIREIVTPEEMEVAVFTDEKQVREENLRVIREKLEEAF-AENEEWLEILGEALYQY---Q 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR + +R ++A+ ++ R HGS++F RG TQ + TL + Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSE 358 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP + Sbjct: 359 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEE 418 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+++L Sbjct: 419 FPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDDDYLVL 478 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + K+ R +IL+E M Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVM 538 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 +K + + R ++G + P++ M I P +I +V+G GK I I+EQTG K++I D+G+V + Sbjct: 539 AKTIEQPRPEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDEGSVSV 598 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 +++ A +MI +I E ++++G+VV + +FGAF+ F ++G+VHIS++S E Sbjct: 599 CGVDAQKMDEAMKMIATIVTDFEAGQVFEGKVVSIKEFGAFIEFAPGKEGMVHISKISKE 658 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ DV+ GD V V L D G+I SMK Sbjct: 659 RIKHVEDVLTLGDKVKVVCLGKDKMGRISFSMK 691 >gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium DG1235] gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium DG1235] Length = 745 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 280/690 (40%), Positives = 422/690 (61%), Gaps = 18/690 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + TG +A + GAV + GET + + +++++GQD+FPLTV+Y+E+ A G+IPG Sbjct: 14 ITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDYREKYTAAGRIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 GY +RE RP+E EIL SR+ DR RPLF K + NE Q+I V+ D + ++ + AS Sbjct: 74 GYFKREGRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFVLSADQVNDADILMVNGAS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL +S +P+ GP+ +V I+G +V NP ++E S LDL GT+D +LM+E A+Q Sbjct: 134 AALAISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYASDLDLIYVGTEDEMLMIEGSADQ 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKE 250 +SE+ L+A+ + H +P+I I +L + KE P+ + D ++ ++ ++ + Sbjct: 194 ISEERFLEALEYAHKAIQPIIAGIKQLREEAGKEKKTFPLCVLEDDVRQI---VNSLVGD 250 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVRTVMLD 309 + +C +K R +ID+LK ++ +N ++ E++ R +LD Sbjct: 251 RIGEACAAGDKQERNAKIDELKVLAEGALQEKYGDDYNPAQLNMAMEELLEHTYRKSILD 310 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-G 368 VR GR +R++ +QVG++ R HGS+LF RG+TQ +V+ TLG Q +D+++ G Sbjct: 311 NGVRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSLDAITGG 370 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 FM+HYNF P + GE R G P RREIGHG LA R++ PV+P FPY++RI SE Sbjct: 371 PTTKSFMLHYNFPPFSVGETGRFGTPGRREIGHGALAERSLLPVVPSEDVFPYSIRISSE 430 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSDISGD 482 I S+GS+SMA++CG L+LMDAGVPI+ PVAGI++GLV + D+ IL+DI G+ Sbjct: 431 IMASNGSTSMASICGGCLSLMDAGVPITDPVAGISVGLVSEFDENGKPAKHHILTDILGE 490 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDH G MDFK+AGT +GIT Q+D+KI G+ +I+ ++ Q++ RL IL M+ L Sbjct: 491 EDHFGDMDFKIAGTKNGITGFQLDLKINGLPFDIVKASVAQSREARLEILANMATALEAP 550 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--GTVKIASSSL 600 R ++ PR+ + I P++I +IG GGK IR IVE TGA+V+I+DD G V + ++S Sbjct: 551 REEVAATAPRITTVQINPEKIGALIGPGGKNIRRIVEITGAQVDINDDNSGRVNVYATSE 610 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ A I + E KIY+G V +FG FV ++GLVHIS+L+ RV T Sbjct: 611 EAMKRALHEIDLVCGEIEEGKIYRGIVKATKEFGCFVEVLPGQEGLVHISELADFRVRNT 670 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV K GD + VK L D+RG+++LS K Sbjct: 671 EDVCKAGDEMVVKCLGVDERGRVRLSRKAA 700 >gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] Length = 752 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/691 (41%), Positives = 426/691 (61%), Gaps = 16/691 (2%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ GR L +E G IA+Q+ G+V+ Y +T VL+T + KD DFFPLTV YQE+ YA Sbjct: 21 EFHGRTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKD-TDFFPLTVLYQEKMYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+ RRE RPTE+ L +R+IDR IRPLF++ ++NE Q++ V+ D ++S + Sbjct: 80 AGKIPGGFTRREGRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCDPDASSEMA 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 S+ +S AL +S +PF GPV G V ++G+Y++NP +++++ S L++ V+GT++A+ MV Sbjct: 140 SLFGSSLALCISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDLNVTVAGTKNAINMV 199 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E A ++SE+ +L A++ GH+ K + ++ CAKE + + + + + + Q++ Sbjct: 200 EAGAKEVSEEDMLKALMIGHDAIKELCAIQEEVIAACAKEKMEVSLYEINPI---VKQLV 256 Query: 249 KED----LRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHSSWNEGEIVSVFE---DI 298 E +R + I K R +ID+L +M V+ E E + E ++ Sbjct: 257 DEKGAQRIREAVSIKGKLERYGKIDELIAEMEEEVAKLEWEDDKAREKAVKQAHEYGVEV 316 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +A VR ++ ++K+R DGR + +R + +QV LL R HGS++F RG+TQ + V TLG Sbjct: 317 EAGEVRRLISEEKIRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGPLS 376 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L+ FM YNF P + GEV RM +P RREIGHG L RA+ VLP + Sbjct: 377 DAQLIDDLTTETEKRFMHQYNFPPFSVGEVGRMSSPGRREIGHGALGERALLQVLPTAEE 436 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R +E+ ES+GSSS A++C +++LM AGVPI VAG+AMGL+ GD + IL+D Sbjct: 437 FPYAIRTCAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSILTD 496 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G EDH G MDFKVAGT +GITA+QMD+K+ GISE I+ AL QA +GR+ IL+ M Sbjct: 497 IQGMEDHYGDMDFKVAGTRNGITALQMDIKVTGISEEILREALAQAHKGRMEILDNMETA 556 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIAS 597 +S R + E+ P++ M IP ++IR VIG GG+ I I+ G K++I DDG Sbjct: 557 ISTPRDHVSEWAPKMAQMMIPVEKIRVVIGKGGEQIDKIIAACDGIKIDITDDGKCVFYH 616 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+ A +++ + +V IY V++V + AFV D L+H+S+L+ RV Sbjct: 617 TKQDMIDKAMQIVGDLIREAKVGDIYDATVLEVRESFAFVMLFPGTDALLHVSELAWNRV 676 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 K D + GD + VK+ D GK+K+S K Sbjct: 677 EKIQDALHVGDVIKVKVTGVDATGKVKVSAK 707 >gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 729 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/693 (42%), Positives = 435/693 (62%), Gaps = 21/693 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G ++L TG++A+Q+DG+V+ G+T++LATVV R K G DF PL+V+YQE+ A G+ Sbjct: 15 GTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y +TQV+I+++ D + P ++ + Sbjct: 75 IPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PF GP+ +V I+GQ V+NP+L D ++ +L+ V+G+ + MVE E Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFIVAGSAQDIGMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 AN++SE +++AI F H K I A +LA + ++++ E + ++E Sbjct: 195 ANEISETEMVEAIAFAHEAIKKQIAAQVELANLVG----ATTKREYN--HEPSNPELREA 248 Query: 252 LRVSCFI---------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + + K+ R ++ ++ ++ E + F D+Q Sbjct: 249 IFAATYDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDA 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++LD+ +R+DGRD TVR I ++V L HGS++F RG+TQ++ VTLG ++DEQ Sbjct: 309 VRNLVLDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQM 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D N F++HYNF +TGEV P RRE+GHG LA R++ VLP A+ PYT Sbjct: 369 IDGAFINGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYT 428 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480 +R+VS+I ES+GSSSMATVC +LALMDAGV + PV+GIAMGL+ D + ILSDI Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDIL 488 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT GI A QMD+KI G+ ++ AL QAK RLHIL EM+K +S Sbjct: 489 GDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTIS 548 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597 R PR+ + I + I VIG GGK+I+ + +TGA ++I D+ G V+I + Sbjct: 549 APREDYKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFA 608 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+ A IR+I PE+ Y+G+V +M FGAFV +DGL+HIS++ +R Sbjct: 609 DNKTAIDEATARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + KEGD V VKLLD D +GK+KLS K + Sbjct: 669 ETMDGIFKEGDKVTVKLLDVDKQGKMKLSRKAL 701 >gi|225388763|ref|ZP_03758487.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme DSM 15981] gi|225045170|gb|EEG55416.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme DSM 15981] Length = 702 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 290/701 (41%), Positives = 429/701 (61%), Gaps = 17/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +++++ AGR L +E GR+A Q++GAV YG+TVVL+T ++G DFFPL+ Sbjct: 1 MFKSYSMDL--AGRKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLS 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V ++E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + VM Sbjct: 59 VEFEEKLYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D SP + +M+ ++ A +S +PF GP QV I+G++++NP D+ S L L V+ Sbjct: 119 DPNCSPELTAMLGSAIATSISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSDLALTVA 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T++ V+M+E AN++ ED +++AI K +I I + C KE +S Sbjct: 179 STREKVIMIEAGANEVPEDKMIEAIFKADQVNKEIIAFIDTIVAECGKEKHTYES---CA 235 Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 + EE+ IKE ++ + F +K R I + +++ F +E+ W G I Sbjct: 236 IPEELFAAIKELVPPAEMEEAVFTDDKQTREGNIRAISERLEEAF-AENEEW-LGLIDEA 293 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 Q K VR ++L R DGR +R ++A+V LL R HGS +F RG TQ + TL Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTL 353 Query: 355 GTREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 + Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVL Sbjct: 354 APLSEAQRLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVL 413 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471 P +FPY +R VSE ES+GS+S A++C S+L+LM AGVPI VAGI+ GLV + D Sbjct: 414 PSEEEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKDMVAGISCGLVTGETDD 473 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D+++L+DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + + R+HI Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVAGTKKGITAIQMDIKIHGLTRPIIEEAISRTREARIHI 533 Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 L++ M V+SE R L + P++ + I P +I +V+G GKVI I+E+TG K++I+DD Sbjct: 534 LDDVMRPVISEPRKHLSPYAPKIIQINIDPQKIGDVVGKQGKVINKIIEETGVKIDINDD 593 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G+V + + A I A ++I+SI E I+ G+VV++M+FGAFV +DG++HIS Sbjct: 594 GSVNVCGTDEAMINRAVQIIKSIVTEIEPGMIFTGKVVRLMNFGAFVELAPGKDGMIHIS 653 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +LS +RV DVV GD V VK+++ D G+I LSMK D Sbjct: 654 KLSEKRVNTVEDVVNIGDEVTVKVIEVDKMGRINLSMKPSD 694 >gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 730 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/701 (40%), Positives = 440/701 (62%), Gaps = 23/701 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E+ G+ L +E G++A+Q+DGAV+ Y ++V+L TV + G DF PLTV YQE+ Sbjct: 7 EREFFGQKLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVPGTDFLPLTVEYQEKF 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+L+RESRP++N +L +R+IDR IRPLF +NE QVI+ V+ D ++ P Sbjct: 67 YAAGKIPGGFLKRESRPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDNPPD 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 + ++A+S L +S +PFEG V G QV Y++G+YV+ P DE ++ LD+ V+GT+DAV Sbjct: 127 IWGIMASSLVLNISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSELDIVVAGTEDAVA 186 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEE 242 MVE EA ++SE+V++ A+ H K ++ E IS+ K + I + LE Sbjct: 187 MVEGEAKEVSEEVMVGALEAAHEAIKSLVAFQKEIISEF--QTEKWELEIPAAPEGFLES 244 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEI-------VSV 294 + + + L P K + K + + +++ F +W+E EI Sbjct: 245 FDTLVDRNKLAEIMLTPGKKNKDKALKTYRDELIEQFIGKAKETWSEEEIEDNIGFVKDF 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + DI+ KV+R ++++ VRMDGR +R I+ ++ LL R HGS+LF RG+TQ++ +VTL Sbjct: 305 YHDIEKKVMRRRVIEEDVRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTL 364 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G DEQ VD++ FM+HYNF P +TGEV R+ P RREIGHG LA R++ ++P Sbjct: 365 GATMDEQIVDTMFEEGSKSFMLHYNFPPFSTGEVKRLRGPGRREIGHGHLAERSLKNIVP 424 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPYT+R+VSE+ ES+GSSSMATVC SL+LM AGVP+ K VAG+AMG++++ + + Sbjct: 425 NGESFPYTIRVVSEVLESNGSSSMATVCSGSLSLMAAGVPMEKHVAGVAMGMIQEPEKTV 484 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G+EDH+G MDFKV GT GITA QMD+K+ G+S IM AL+QA+ RL IL+ Sbjct: 485 VLTDILGNEDHMGDMDFKVTGTRDGITAFQMDVKVSGVSSEIMTKALEQARLARLKILDL 544 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-V 593 M + + E R + ++ P + + +P ++I +IG GGKVI+ + + + + IDD+ + Sbjct: 545 MYEAIPEPRKFVSDYAPIIRTINLPYEKIGEIIGPGGKVIKKLSSEYDSTIFIDDERSQA 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 KI S+ +++ ++I +I + ++++G++ + +G FV + GL+HIS++ Sbjct: 605 KIVGSNREKLDQLEKVIDAIISEVKPGQLFEGKISRAEAYGFFVEIAPGKTGLLHISKMG 664 Query: 654 TERVAKTSDVVKE---GDTVWVKLLDFDDRGKIKLSMKVVD 691 A D ++E GDT+ V++ D GKI L ++ V+ Sbjct: 665 ----ASGKDFLREHKVGDTIAVEVAGTDQMGKISLKLEGVE 701 >gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon 274 str. F0058] Length = 741 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 297/699 (42%), Positives = 451/699 (64%), Gaps = 28/699 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ T G+T++LATV + G DF PL+V+Y+E+ A G+ Sbjct: 13 GREIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLSVDYKEKFSACGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+LRRE RP++ EILISR++DR++RPLF Y ET V + + D +P ++ + Sbjct: 73 FPGGFLRREGRPSDYEILISRLVDRALRPLFPDDYHAETFVNVTLYSADGVDAPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+G++V+NP +++ Q + L+L V+ T D ++MVE E Sbjct: 133 AASAALAVSDIPFGGPISEVRVARIDGEFVINPTMEQLQNADLELIVAATLDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKP-------VIEAISKLAK--MCAKEPIVIDSKDFSKLEE 242 ++SEDV+L+AI H KP ++EA K K C ++ + +D + Sbjct: 193 MKEVSEDVLLNAIKAAHEAIKPQCQVQLDMMEAAGKTEKRLYCHED----NDEDLRRDVR 248 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301 E + D+ VS +K+ R + + ++ ++ E ++ ++ + D++ Sbjct: 249 EKTYQKAYDIAVSGNA-DKHCRTAAFEAIVEEYIATIPEEEATDERKALIKRYYHDVEKD 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I ++V L THGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 308 AMRRAILDEGKRLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTVTLGTKLDEK 367 Query: 362 YVDS--LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +D ++GT R F++HYNF P +TGE RRE+GHG LA RA+ PV+P+ + Sbjct: 368 IIDEALITGTDR--FLLHYNFPPFSTGEARPSRGVGRREVGHGNLALRALKPVIPE--NY 423 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILS 477 Y +R+VS+I ES+GSSSMATVC +LALMDAGVPISKPV+GIAMGL+ + G ++ +LS Sbjct: 424 KYCIRVVSDILESNGSSSMATVCAGTLALMDAGVPISKPVSGIAMGLISENKGKNYAVLS 483 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL+QA GR+HIL ++++ Sbjct: 484 DILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILENALRQAHEGRMHILGKITE 543 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVK 594 ++E R L PR+E++ IP + I VIG GK+I+GI +TGA ++ + G V+ Sbjct: 544 TIAEPRADLKPHVPRIEVITIPKEFIGAVIGPQGKIIQGIQAETGATISIEEEGEVGIVE 603 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IA+++ IEAA E +R IT +PE K+Y V VM +G FV F ++GL+HIS++ Sbjct: 604 IAAANRDSIEAALEKVRRITAMPEAGKVYSSTVKSVMPYGVFVEFMPGKEGLLHISEIDY 663 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + A + +KEGDT VKL++ D GK +LS +V+ + Sbjct: 664 NKYATIEETGLKEGDTFDVKLIEIDKSGKYRLSSRVLKE 702 >gi|160880894|ref|YP_001559862.1| polynucleotide phosphorylase/polyadenylase [Clostridium phytofermentans ISDg] gi|187610260|sp|A9KNK6|PNP_CLOPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160429560|gb|ABX43123.1| Polyribonucleotide nucleotidyltransferase [Clostridium phytofermentans ISDg] Length = 698 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/690 (41%), Positives = 426/690 (61%), Gaps = 14/690 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GA YG+TVVL+T ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGK+PGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D + SP + Sbjct: 67 AVGKVPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ ++ +S +PF+GP QV ++G+ V NP + S L L V+ T+D V+M Sbjct: 127 TAMLGSAISVAISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSDLALTVASTRDKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +L+AI H + VI+ I K+ KE S ++ EEM Sbjct: 187 IEAGANEVPEDKMLEAIFAAHEVNQEVIQFIDKIVAEFGKEKHGYIS---CEIPEEMFAA 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 IK E + + F K VR + I ++K K+ F + W +V++ Q K Sbjct: 244 IKEVVTPEQMEEAVFTDVKQVREENIREIKNKLAEVFEESNPEWLHLIDEAVYK-YQKKT 302 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L R DGR+ +R ++A+V +L R HGS +F RG TQ + V TL + Q Sbjct: 303 VRKMILKDHKRPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLSEAQK 362 Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L +++ +M HYNF + GE P RREIGHG LA RA+ PVLP A+FPY Sbjct: 363 LDGLDEAEKSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEAEFPY 422 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479 +R VSE ES+GS+S A+VC S+L+LM AGVPI K VAGI+ GLV DD+++L+DI Sbjct: 423 AIRTVSETMESNGSTSQASVCASTLSLMAAGVPIKKQVAGISCGLVTGDTDDDYLVLTDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538 G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +I+NE M+ Sbjct: 483 QGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINEVMTPA 542 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E R ++G++ P++ + I P +I +V+G GK I I+EQTG K++I+D+G V + + Sbjct: 543 IAEPRTEVGKYAPKIIQIQIDPQKIGDVVGQRGKTINAIIEQTGVKIDINDEGAVSVCGT 602 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 ++ A MIR+I E ++++G+V+ + +FGAF+ F ++G+VHIS++S ER+ Sbjct: 603 DKDMMDKAINMIRTIVTEFEEGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISKERIN 662 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV+ GD V V L D G+I S+K Sbjct: 663 HVEDVLTLGDVVKVVCLGKDKMGRISFSIK 692 >gi|172035539|ref|YP_001802040.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. ATCC 51142] gi|254782715|sp|B1WQ52|PNP_CYAA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171696993|gb|ACB49974.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. ATCC 51142] Length = 715 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 300/695 (43%), Positives = 442/695 (63%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GAVL G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTTKG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF ++N+ Q+I + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRNDIQIIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S A++ + +PF GP+ +V I +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGSSIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I E + +L AK EP +D + + Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYEIMEELGMEIAKAEPPSVDEALEKFISD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------HSSWNEGEIVS 293 + IK+ L + K R +D++K+ + +E +S + + + Sbjct: 247 RAADSIKKVL--VQYDLGKAERDSALDNIKETAIEEAIAELPEDDPIKVTTSEDPKAVGN 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352 +++ + K++R+ ++D+ +R+DGR + VR IS +VGLL R HGS+LF RG TQ + Sbjct: 305 LYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364 Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q + D L ++ HYNF P + GE + +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAILP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++G Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGK 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ A++QA RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M V+ + R +L F PR+ M I P+QI VIG GGK I+ I EQTG+K++I DDG Sbjct: 545 LDKMLAVIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ + E AR++I ++T ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K + V GD V VK+ + D++G++ L+ Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699 >gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] Length = 721 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 296/704 (42%), Positives = 422/704 (59%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T S ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ Q++ M D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+S+ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT + Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239 ++MVE ANQL E V++AI FG+ +I+A + K E + ++ D Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEAPDADTTLPL 242 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290 LE+ S+ I E L F K R ++D ++ + S N Sbjct: 243 YLEKACSKSIGEVL--GQFAQSKADRDSKLDAIRSNTAEAIEGLKDTDPVRQLVSSNSKA 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R ++ R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPNTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++ N + A+ +A+ RL Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMNTIAEAINKARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A + A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704 >gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] Length = 745 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/700 (42%), Positives = 445/700 (63%), Gaps = 17/700 (2%) Query: 3 DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + H +IE+ R L LETGRIA+Q+DG+V+A G+T+VL+T S+ + +FFPLTV Sbjct: 37 EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 95 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+E+ A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF + ++ V+ V+ Sbjct: 96 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 155 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + V++ V +SAALMLSG PF GP +V ++G Y++NP + + ++ +DL V+G Sbjct: 156 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 215 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 +DA++MVE EA ++SE+ +++A+ H + + E +L + A EP + + ++ Sbjct: 216 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEW-EADRV 273 Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 E++ Q ++E+ +V+ I Y + I DLK + V + S EG S Sbjct: 274 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 333 Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 D +V +R +++++ R+DGRD VRD+ +VG L R HGS++F RG+TQ + Sbjct: 334 RDAIGEVEKDEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 393 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +TLGT +D Q VD + F +HY F P + GE S + P RREIGH LA RA+ P Sbjct: 394 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 453 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ FPYT+RI +++ ES+GSSSMA+VC SLALMDAGVPI KPVAGIAMGLV++ D Sbjct: 454 VIPEQDAFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 513 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G EDHLG MDFK+ GT GITA QMDMKI G+S ++M+ AL+Q++ R HI Sbjct: 514 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 573 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590 L+ M + ++E R +L PR+ + I PD+I VIG GGKV++ + E+T ++ ++++ Sbjct: 574 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 633 Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 G V IA+++ + EAA E I+ I VPE + Y G V + DFGAFV + GL+H Sbjct: 634 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 693 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +S++ + V D ++ GD V V LL+ D GK++L+ K Sbjct: 694 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 733 >gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis YCH46] gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis NCTC 9343] gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16] gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis YCH46] gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides fragilis NCTC 9343] gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16] gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 638R] Length = 708 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 440/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+G++V+NP D+ +Q +D+ V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQADMDIMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++MVE E +++SE +L+A+ H K +A +L +M K + E Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 238 Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 E + +++ + +C+ K+ R D ++ + + FS E I Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ + Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRM 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P+ +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++ + +SE R +L + PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILGKIEETISEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ G ++I+ ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F +DGL+ Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|257066122|ref|YP_003152378.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii DSM 20548] gi|256798002|gb|ACV28657.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii DSM 20548] Length = 711 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/680 (41%), Positives = 428/680 (62%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ ++ G+ A Q++G G+T +L T V ++G DFFPL ++QE+ YAVGK Sbjct: 12 GKDFEITIGKFAEQANGECYIKSGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+L+RE + ++ LISR +DR +RPLF + Y N+ Q+I V+ D ++ P ++ + Sbjct: 72 IPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF+GPV V + + ++NP +E ++ SL+L V+G + A+ MVE Sbjct: 132 GASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSSLELTVAGKKGAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 A ++SE +L+A++ E + + I + KE I + + ++L+ ++S +E+ Sbjct: 192 AKEISEGEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQVEETELDRKISADFEEE 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I ++++ + E+ +E EI ++I K VR ++ K Sbjct: 252 IKNSIRTTDKTEREDNIFNIEEAAKEKYLEEYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370 +R DGRD +R +SA+ GLL R HGS LF RG TQ + VVTLG+ D Q +D L+ + Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 + ++ YNF P G+V + P RREIGHGRLA RA+ PVLP FPYT+R+VSE+ Sbjct: 371 QKRYIHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALLPVLPDEKDFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI+KPVAGIAMGL+K+ D IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPITKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI+ ++ +L A R+ IL+ + + + R + ++ Sbjct: 491 FKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIESAIEKPRSDISDYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + I P+++R+VIG GGK I I++ TG K+ +DDG + +AS + A EMI Sbjct: 551 PRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASEDGESGKKAIEMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +SI P+ IY G+VV++M+FGAFV ++GL+HISQ+ RV K DV+ GD V Sbjct: 611 KSIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDVLSVGDEV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690 >gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides thetaiotaomicron VPI-5482] gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6] gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6] Length = 708 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 292/705 (41%), Positives = 443/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP D+ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 DNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +EE+ + ++E + K+ R D ++++ + FS E I Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAPLID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D++ + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VSEI ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+++++ ++E R L + PR+E M IP + I VIG GGK+I+G+ E+TGA + I++ Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596 Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] Length = 712 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 299/696 (42%), Positives = 431/696 (61%), Gaps = 12/696 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG +A+Q+DG+V+ G+ ++LATVV + +G DF P++V+YQE+ + GK Sbjct: 15 GREIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSVDYQEKFASTGK 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+L+RE R ++ EILISR++DR+IRP+F Y +TQ+ I ++ D E P ++ + Sbjct: 75 IPGGFLKREGRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITLVSGDDEVLPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+G+ +NP E ++ SL+ V+G+ D +LMVE E Sbjct: 135 AASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELEKASLEFIVAGSLDFILMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 A+++ E+ +L+A+ F H E K +A +L K+ KE K L ++M + Sbjct: 195 ADEIQEEEMLEAMQFAHEEIKRHCQAQIELTKLVGKEVKREYTHEKSDPALFDKMKAEVY 254 Query: 250 EDL--RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 + L VS I K R I ++K + V EH + I F I + R + Sbjct: 255 DKLYASVSKQIANKSERSALIKEIKDEFVESLGEEHE-YEASLIGPYFSKIHKEAARNLT 313 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 LD+K R+DGR VR I + V L HGS++F RG+TQ++ TLGT+ DE VD + Sbjct: 314 LDEKKRLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGAT 373 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + N F +HYNF +TGEV P RRE+GHG LA RA+ VLP + PYT+RIVS Sbjct: 374 ISGYNKFYLHYNFPGFSTGEVKPNRGPGRREVGHGNLAMRALKKVLPPAEENPYTIRIVS 433 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDEDH 485 +I ES+GSSSMATVC SLA+MDAG+ I V GIAMG++ D + + ILSDI GDEDH Sbjct: 434 DILESNGSSSMATVCAGSLAMMDAGIQIKSAVTGIAMGMISDANTGKYSILSDILGDEDH 493 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKV GT GITA QMD+K+ G+ +++ AL QAK GRLHIL+E++K L+ + + Sbjct: 494 LGDMDFKVTGTSQGITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDEITKTLAAPKTE 553 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLAE 602 L TPR +M IP + I VIG GGKVI+ I + T + +D+ G + + S++ Sbjct: 554 LKPHTPRSFMMMIPKELIGAVIGPGGKVIQEIQKDTSTTIVIEEVDNQGKISVFSANQDN 613 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 ++AA I++I PE+ + Y G+V + FGAFV F +DGL+HIS++ ERV Sbjct: 614 MDAAISRIKAIVAQPEIGETYTGKVKNIQPFGAFVEFMPGKDGLLHISEIKWERVESMDG 673 Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697 V++ G+ + VKL+D D + GK KLS K + KP Sbjct: 674 VLEPGEEIMVKLIDIDKKTGKFKLSRKALLPKPEKP 709 >gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9303] gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 721 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 294/704 (41%), Positives = 422/704 (59%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LI+R+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+G+PF+GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASMATLLAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE ANQL E V++AI FG+ +I+A + K EP D+K + Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVCELIKAQQSILKDAGIKQVQPEPPTQDTKLST 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290 LE+ S+ I E L+ F K R ++D +K K S + + N Sbjct: 243 YLEKNCSKSIGEVLK--QFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANSKV 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R ++ + R+DGR + VR I++ G+L +R HGS LF RG TQ + Sbjct: 301 LSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ ++ HYNF P + GE M +P RRE+GHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY LR+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 IPVLPPKDTFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 + IL+DI G ED LG MDFKVAGT GITA+QMDMKI G+ + A+ QA+ R+ Sbjct: 481 DAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPARI 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIDAPRTSLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A EAA+ +I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 GGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFSGTITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 661 SQLSEARVEKVDDVVKVGDEVTVRIREIDNRGRINLTLRGVPQN 704 >gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9301] gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 721 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 433/709 (61%), Gaps = 32/709 (4%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q++G+V+ G+T +L T + K+ DF PL +Y+E+ Y Sbjct: 8 ITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVSDFLPLICDYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LISR+IDR +RPLF ++E Q++ + + D + Sbjct: 67 AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +L +PF GP+ +V I ++LNP E ++G LD+ V+G+++ ++M Sbjct: 127 LAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSKEGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245 +E ANQLSE ++AI FG+ EA+S+L K ++E ++ D K E E Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVSELIK--SQEDLLKDLGIKQVKPSEPEED 237 Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEH-------------SSWN 287 + + L +C P +K+ K+ DL+ + + + S N Sbjct: 238 KTLPSFLEKNCTKPIELVLKKFDLSKEERDLELEKIKVETQGKIESLKDDNQLKVLLSEN 297 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346 + + S F+ + K++R+ +++ R+DGRD + VR ISA G+L +R HGS+LF RG T Sbjct: 298 DKLLSSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + TLGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RAI PVLP FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV+G AMGL Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G + IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ +I+ A+++A+ Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RLHIL +M + + + + L PR+ I P+ I VIG GG+ I+GI E+T K++ Sbjct: 538 ARLHILEKMQEAIEKPQETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+D G V IAS A E A+++I +T +I+ G V +++ GAFV ++G+ Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGM 657 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VHISQLS RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNGG 706 >gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14] gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14] Length = 708 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 292/705 (41%), Positives = 443/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP D+ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 DNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +EE+ + ++E + K+ R D ++++ + FS E I Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D++ + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VSEI ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+++++ ++E R L + PR+E M IP + I VIG GGK+I+G+ E+TGA + I++ Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596 Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21] gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21] Length = 732 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 293/695 (42%), Positives = 441/695 (63%), Gaps = 25/695 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G T++LATVV + K G DF PL+V+YQE+ A G+ Sbjct: 30 GRQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLSVDYQEKYAATGR 89 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+LRRE+R ++ EILISR++DR++RPLF Y +TQV+I ++ D + P ++ + Sbjct: 90 IPGGFLRREARLSDYEILISRLVDRALRPLFPDDYHADTQVMITLISADKDIMPDALAGL 149 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+G++V+NP L D ++ +L+ V+G+ + ++MVE E Sbjct: 150 AASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLERATLEFIVAGSANDIVMVEGE 209 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 A ++SE+ +++AI F H K ++A +LA+M K ++ + ++ E + +KE Sbjct: 210 AKEISEEEMVEAIAFAHEAIKVQVQAQLELAEMVGK----LEKRVYN--HEPSNPELKER 263 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIV---------SVFEDIQA 300 + + + V + KK+ + F+ +E + GE V F D+Q Sbjct: 264 VYAATYDSVYAVAKSGLS--KKERSAKFADIAEAFALTLGEDVDEETVFLAKKYFHDVQY 321 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++L++ +R+DGRD TVR I ++V L HGS++F RG+TQ++ VTLG +EDE Sbjct: 322 DAVRNLILNEGIRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGAKEDE 381 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D + F++HYNF +TGEV P RRE+GHG LA R++ VLP + P Sbjct: 382 QMIDGAFINGYSRFILHYNFPGFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPSQEENP 441 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSD 478 YT+R+VS+I ES+GSSSMATVC +LALMDAGV I+ PV+GIAMGL+ D + +LSD Sbjct: 442 YTIRVVSDILESNGSSSMATVCAGTLALMDAGVKITAPVSGIAMGLITDEKTGKYAVLSD 501 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDEDHLG MDFKV GT GI A QMD+KI G+ ++ AL QAK RLHILNEM K Sbjct: 502 ILGDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLKEALYQAKESRLHILNEMLKT 561 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKI 595 + R PR+ + I + I +IG GGK+I+ + +TG ++I++ G V++ Sbjct: 562 IEAPREDFKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGTTISIEEIEGKGIVQV 621 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + I+ A I++I PEV +Y+G+V +M FGAFV +DGL+HIS++ + Sbjct: 622 FADNKTSIDDAVRRIKAIAAKPEVGDVYEGKVKSIMPFGAFVEILPGKDGLLHISEIDWK 681 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 R + + G+ V VKLLD D +GK+KLS K + Sbjct: 682 RYETMEGIFQVGEIVKVKLLDIDKQGKLKLSRKAL 716 >gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] Length = 733 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/689 (41%), Positives = 433/689 (62%), Gaps = 12/689 (1%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E + G+ LE G +A+Q+ GA + G++ VL T V + KD DFFPLTV++ E Sbjct: 5 THEFDLYGKHYVLEAGELAKQATGACVVKCGDSTVLLTAVVSKERKD-YDFFPLTVDFIE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RE+RP+E LI+RMIDR +RP F + ++NE Q++ + D ++ Sbjct: 64 KMYAVGRIPGGYLKREARPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINA 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 +S++ ASAAL + G+P+EGP+ ++ + G++++NP +E D LDL ++G+ Sbjct: 124 VDTISVMGASAALHIGGVPYEGPLACVRIGRNSETGEFLVNPTYEERDHSDLDLELAGSA 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + M+E A+++SE+ +L A+ FG E K + I+ +++ L+E Sbjct: 184 TFISMLEAGAHEISEEDMLSAMAFGQEAIAAFCEEQKKFFEKWEAVNGPIEKREYI-LDE 242 Query: 243 EMSQMIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 + ++ + +++ + +K R ++ DL + + + F+ E I + Sbjct: 243 PIPEVHERIFAHYDEMSAALKDADKQSRMAKVADLMETIKAEFNEEEQEEWSRAIAVELK 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ +R ++++ R+DGR ++ +R I + L HGS LF RG TQ + + TLG Sbjct: 303 SLEKHAMRVMVVETGERVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGM 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D++ ++ HYNF P TGE RMG+P RREIGHG LA RA+ PV+P Sbjct: 363 LNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAERALLPVIPSE 422 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+ +PV+G+AMGL+++ ++L Sbjct: 423 DEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLVRPVSGVAMGLIQENGKTVVL 482 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED LG MDFKV GT GITAMQMD K G++ I+ AL QA GR+ ILN+M Sbjct: 483 TDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALMQAHEGRMFILNKML 542 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + R + E P++ ++IP D+IR+VIG GGKVIRGI E TGA V+I +DG+V IA Sbjct: 543 EAIPAPREETKETAPQILSLSIPTDKIRDVIGSGGKVIRGIQEDTGATVDIQEDGSVFIA 602 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A EAA E I++I VPEV + Y G+VV + FGAFV +DGL+HIS+++ R Sbjct: 603 GTNGA-AEAAAERIKAIVKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVAQGR 661 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V K DV+ GD V V++L+ D++GKI L Sbjct: 662 VEKIEDVLSIGDEVKVRVLEVDEKGKISL 690 >gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group] gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group] gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group] Length = 902 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 297/745 (39%), Positives = 449/745 (60%), Gaps = 61/745 (8%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 + +I R + +ETG I RQ+ +V+ T GET+V ++V + D DFFP++V+YQE Sbjct: 91 STKIPVGDRHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHYQE 150 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+L+ R+IDR +RP K + ETQ++ V +D S Sbjct: 151 RLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHS 210 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P +++ AA A+ LS +P + + G +V IN Q+V+NP ++ D LDL ++GT A Sbjct: 211 PDSLAITAAGVAMALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSA 270 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242 +LM+E + L+E+ +L A+ G + + +AI L + C K+ + D+ D +L Sbjct: 271 ILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYR 329 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW---------- 286 + + ++L + I EK +R K + L++K+++ Y + + SS Sbjct: 330 HVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIE 389 Query: 287 -------------NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRM 314 +EGE+ VS VF+++ +K +R +++ R Sbjct: 390 EEDEDEVIVDGEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRS 449 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-D 373 DGR +R I++Q GLL R HGS+LF RG+TQA+ VVTLG + Q +D+L T+ + Sbjct: 450 DGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKS 509 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F + Y F P + GEV R+GAP+RREIGHG LA RA+ P+LP FPYT+R+ S ITES+ Sbjct: 510 FYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESN 569 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487 GSSSMA+VCG LAL DAGVPI PVAGIAMGLV D +F +ILSDI+G ED G Sbjct: 570 GSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASG 629 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAG ++GI+A QMD+K+ GI+ IM AL QA+ GR HILNEMSK L Sbjct: 630 DMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLS 689 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAA 606 + P + +M + P+++ +IG GGK I+ I+E+TG ++ DDGTVKI + L+ +E + Sbjct: 690 PYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKS 749 Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 + +I ++T VP+V +IY+ +K + +GAFV R+GL HIS+LS+ +AK D K Sbjct: 750 KAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFK 809 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VKL++ +D+G+++LS + + Sbjct: 810 VGDRIDVKLIEINDKGQLRLSSRAL 834 >gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing bacterium SS3/4] Length = 739 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 286/695 (41%), Positives = 428/695 (61%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L +E GR+A+Q++GA YG+TVVL+T +DG DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVEVGRVAKQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN L SR+IDR +RPLF K Y+N+ + VM D E SP + Sbjct: 67 SVGKIPGGFTKREGKASENATLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPECSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP QV I+G++++NP + + S L L V+ T++ V+M Sbjct: 127 TAMLGSAIATCISDIPFDGPCAMTQVGLIDGEFIINPTSTQKKVSDLALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E A ++ E +++AI H + +I+ I ++ C KE +S + +E+ Sbjct: 187 IEAGAKEVPEQTMINAIFKAHEVNQEIIKFIDRIVAECGKEKHTYES---CAIPDELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IKE ++ + F EK R + I + +++ F +E+ W G+ V + Q Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIRQITERLEEAF-AENEEWLPLIGQAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR + +R ++A++ +L R HGS +F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNACTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QRLDGLDENETTKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI VAGI+ GLV + DD+I+L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKTMVAGISCGLVTGETDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536 DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+++ + RL+I+ N M+ Sbjct: 480 DIQGLEDFFGDMDFKVGGTHEGITAIQMDIKIHGLTRPIIEEAIRRCREARLYIMDNIMA 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+SE R L ++ P++ + I P +I +V+G GKVI I+E+TG K++I DDG V + Sbjct: 540 PVISEPRKTLSKYAPKITQITIDPAKIGDVVGKQGKVINKIIEETGVKIDITDDGAVNVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + I+ A IR+I E IY G+VV++M+FGAFV +DG+VHIS+LS +R Sbjct: 600 GTDQEMIDKAIATIRNIVTDVEPGMIYTGKVVRIMEFGAFVELAPNKDGMVHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 VAK DVV GD V V++++ D G+I L+M+ D Sbjct: 660 VAKVEDVVNIGDEVTVRVVEVDRMGRINLTMRPED 694 >gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 727 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 272/679 (40%), Positives = 426/679 (62%), Gaps = 14/679 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G ++LATVV ++ +G DF PLTV+Y+E+ A G+ Sbjct: 15 GRTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ EIL R++DR +RPLF K Y E QV+I +M HD P ++ + Sbjct: 75 FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMIQLMSHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V ING++++NP + + +D+ V +++ V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQQLAESDMDIMVGASKEFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE + DAI F H K IEA +L + K I + + + EE+++ I + Sbjct: 195 MDEVSEKDMADAIHFAHEAIKVQIEAQERLREKVGK---TIRTYEVPQENEEVAKKIYDF 251 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 C+ K+ R + D +K+ + F+ E + + F Q + VR + Sbjct: 252 CYDKCYAIAKENTTKHERSDKFDAVKEACKALFTEEELEEYDKLVSKYFSKAQKEAVRNL 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L++ +R+DGR+++ +R I +VG L HGS++F RG+TQ++ VTLGT + +D Sbjct: 312 ILNEDLRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIP 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P+ PYT+R+V Sbjct: 372 SEQGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKRMIPEDC--PYTVRVV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEI ES+GSSSMATVC +LALMDAG+ + KPV+GIAMGL+ DGD + +LSDI GDEDHL Sbjct: 430 SEILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSDILGDEDHL 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+KI G++ I+ AL+QA+ GR+HIL +++ ++ + Sbjct: 490 GDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMHILGKITDTIAVPNPTV 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEI 603 P++ + +P + I IG GGK I+ + +T + +++ G V+I + I Sbjct: 550 KPHAPKIVRLEMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELGVVEILGTDADGI 609 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 + A + + ++ P ++YK +V ++++FGAFV F +D L+H+S+++ ERV K SDV Sbjct: 610 QEAVDAVYHVSFEPVEGEVYKVRVARLVEFGAFVEFVPGKDSLLHVSEIAWERVEKPSDV 669 Query: 664 VKEGDTVWVKLLDFDDRGK 682 +KEGD + VK L D + K Sbjct: 670 LKEGDIIEVKYLGIDPKTK 688 >gi|239626266|ref|ZP_04669297.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520496|gb|EEQ60362.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 706 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/695 (40%), Positives = 425/695 (61%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGR L +E GR+A Q++GA YG+TVVLAT ++G DFFPL+V Y+E+ Y Sbjct: 7 MDLAGRKLTVEIGRVAAQANGAAFMHYGDTVVLATATASSKPREGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + VM D + SP + Sbjct: 67 SVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPDCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF GP QV ++G++V+NP + Q S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATSISDIPFAGPCATTQVGLVDGEFVINPTAAQKQVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E ++DAI H + +I I + C KE S + + EE+ Sbjct: 187 IEAGANEVPEQKMIDAIFKAHEVNQEIIRFIDTIVAECGKEK---HSYESCAVPEELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 I+E ++ + F +K R K I ++ ++ F+ + W GE V + Q Sbjct: 244 IREIVPPVEMETAVFTDDKQTREKNIAEITARLEEAFAG-NEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR + +R ++A++ LL R HGS +F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAIDEIRHLAAEIDLLPRVHGSGMFTRGQTQILNACTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QRIDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSAEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVPI + VAGI+ GLV DD+++L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKEMVAGISCGLVTGDTDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT +GITA+QMD+KI G++ I+ A+ + + R+HIL++ M Sbjct: 480 DIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAITRTREARMHILDDVMK 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+SE R L + P+++ + I P +I +V+G GKVI I+E+TG K++I DDG+V + Sbjct: 540 PVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDDGSVNVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + A I+ A +I I E +++G+VV++M+FGAFV +DG+VHIS+LS +R Sbjct: 600 GTDEAMIDRAITIITGIVTDIEAGMVFEGKVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 V K DVV GD V VK+ + D G+I L+M+ D Sbjct: 660 VGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694 >gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured Prochlorococcus marinus clone ASNC1363] Length = 721 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 291/703 (41%), Positives = 431/703 (61%), Gaps = 20/703 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERT 67 I + GR ++L TG A Q+ G+V+ G+T +L T ++LK + DF PL +Y+E+ Sbjct: 8 ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT--KTLKKETSDFLPLICDYEEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGG++RRE RP E LI+R+IDR +RPLF ++E Q++ + + D Sbjct: 66 YAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVPAD 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V+++ AS A +L +PF GP+ +V I ++LNP E ++G LD+ V+G+ D ++ Sbjct: 126 VLAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIV 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKD----FSKLE 241 M+E ANQLSE ++AI FG+ +I++ L K + K+ D ++ S LE Sbjct: 186 MIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQNKPTDPEEDKTLPSYLE 245 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293 + + I DL + F K R +++ +K + S +S NE I S Sbjct: 246 KNCGKAI--DLVLKKFDQSKEERDLELEKIKTEAQGKIDSLKDDNQVKVLTSENEKLIHS 303 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 F+ + K++R+ +++ R+DGRD + VR I+A +L +R HGS+LF RG TQ + Sbjct: 304 DFKKLTKKLMRSQIINDGKRVDGRDLDEVRKITASASILPKRVHGSALFQRGLTQVLSTT 363 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA RAI PV Sbjct: 364 TLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPV 423 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV+G AMGL+K+G + Sbjct: 424 LPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKE 483 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ +I+ A+++A+ RLHIL Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARPARLHIL 543 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 +M + + + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+D G Sbjct: 544 EKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGI 603 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IAS A E A+++I +T +I+ G V +++ GAFV ++G+VHISQL Sbjct: 604 VTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQL 663 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 S RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 664 SEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706 >gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 7803] gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7803] Length = 721 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 297/704 (42%), Positives = 423/704 (60%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T S ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ Q++ M D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+S+ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT + Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238 ++MVE ANQL E V++AI FG+ +I+A + K E + DS Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEQPEEDSTLPV 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290 LE+ ++ I E L S F K R ++D ++ + + S N Sbjct: 243 YLEKACTKAIGEVL--SQFDQSKADRDSKLDAIRSSTAETIEALKDSDPVRKLVSANSKA 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R ++ R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ + ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++ + A+ QA+ RL Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMGTIAEAINQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A + A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704 >gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] Length = 714 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/689 (41%), Positives = 436/689 (63%), Gaps = 19/689 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERT 67 ++ GR L +ETG+ A+ G+V TYGETVV+AT D ++ DF PLTV ++ER Sbjct: 15 VDVGGRTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDAPIQ--ADFLPLTVEFEERH 72 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVG+IPG ++RRE RP E IL +R+ DR IRPLF K +++E QV++ V+ D E++P Sbjct: 73 YAVGRIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLTVLSADQENTPD 132 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLM 187 ++ +AASAALMLS +P+EGP+ +V NG+ VLNP ED LDL V+G+++A++M Sbjct: 133 ILGPIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNPVAQEDS-QLDLVVAGSKEAIIM 191 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLE 241 VE A ++SED +++A+ F H +P++E ++ K + P +D+ + L Sbjct: 192 VEAGAQEVSEDRLVEALEFAHRAMQPILELQEQMRAELGKPKFAYEPPAKLDADTQATL- 250 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGE---IVSVFE 296 + +++ L K R ++ ++ ++ +E S ++ + F+ Sbjct: 251 --YQRAVEKGLSSVLQTASKGERSAALEAFRQTLLEELVPPAEDGSVDQERRKLVAEGFD 308 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ + +R ++L + R DGR VR I + +L +THGS++F RG+TQ + VVTLGT Sbjct: 309 EVVKQELRRLILQENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGT 368 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q VD L + F++HYNF P +TGEV R+ SRRE+GHG LA+R + VLP Sbjct: 369 GRDAQLVDDLGIETEDPFLVHYNFPPYSTGEVRRLRGVSRREVGHGNLAKRGLRAVLPSR 428 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 +FPYT+R+V ++ ES+GSSSMATVC LAL+DAGVP+ K VAG+AMGLVK+G+ ++L Sbjct: 429 EEFPYTIRVVGDVLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMGLVKEGEQAVVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G ED LG MDFKV GT G+TA+QMD+KI G++ IM AL QA+ RLHIL+ M Sbjct: 489 TDILGLEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRAALYQAREARLHILSLME 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + + R ++ PR+ + + PD+I +IG GGK IR + E+ G +++I+ DGT+++ Sbjct: 549 RAVPTHRAEMKPHVPRILTLKVNPDKIGGIIGPGGKNIRQL-EELGVEIDIEQDGTIRLY 607 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+S A E A+ I T +V +IY+G V ++ +FGAF+ +DGL+HISQL+ R Sbjct: 608 SASAAAAEEAKARILGQTAEAKVGEIYEGTVTRITNFGAFIEILPGKDGLLHISQLAQGR 667 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V K DV+ G + VK+ D++G++ L Sbjct: 668 VQKVEDVLSLGQKIKVKVNSIDEQGRVDL 696 >gi|160940474|ref|ZP_02087819.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC BAA-613] gi|158437054|gb|EDP14821.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC BAA-613] Length = 707 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/695 (40%), Positives = 423/695 (60%), Gaps = 19/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ AGR L +E GR+A Q+ GA YG+TVVL+T ++G DFFPL+V Y+E+ Y Sbjct: 7 MDLAGRKLTVEVGRVAAQASGAAFMHYGDTVVLSTATASSKPREGIDFFPLSVEYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + VM D SP + Sbjct: 67 SVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMCVDPNCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF GP QV I+G++++NP D+ Q S + L V+ T++ V+M Sbjct: 127 TAMLGSAIATSISDIPFAGPCATTQVGLIDGEFIINPTADQKQVSDMALTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E +++DAI H + +I+ I + C KE +S + EE+ Sbjct: 187 IEAGANEVPEQIMIDAIFRAHEVNQEIIKFIDTIVAECGKEKHTYES---CAVPEELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 I+E ++ + F +K R K I ++ K+ F+ + W GE V + Q Sbjct: 244 IREIVTPQEMEEAVFTDDKQTREKNIAEITAKLEEAFAG-NEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V LL R HGS +F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAITEIRHLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSAEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+L+LM AGVP+ + VAGI+ GLV DD+++L+ Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPLKEMVAGISCGLVTGDTDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536 DI G ED G MDFKV GT +GITA+QMD+KI G++ I+ A+ + + R++IL N M Sbjct: 480 DIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAIARTREARMYILDNVMR 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 V+SE R L + P+++ + I P +I +V+G GKVI I+E+TG K++I DDG V + Sbjct: 540 PVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDDGAVNVC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + A I+ A ++I I E I+ G+VV++M+FGAFV +DG++HIS+LS +R Sbjct: 600 GTDEAMIDKAIQIITGIVTDIEAGMIFNGKVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 V K DVV GD V VK+ + D G+I L+M+ D Sbjct: 660 VGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694 >gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea DSM 7271] gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea DSM 7271] Length = 735 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/684 (40%), Positives = 429/684 (62%), Gaps = 23/684 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G ++LATVV + + DF PLTV+Y+E+ A G+ Sbjct: 15 GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ EIL R++DR +RPLF K Y ETQV+I ++ HD P ++ + Sbjct: 75 FPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V +NGQ+++NP ++ + S +D+ V ++D V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241 +++SE + +AI F H KP IEA +LA+ K EP V + +K + Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E+ + KE+ K R ++ + +K++ ++ F+ E I F++ + + Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPIITRYFDEAEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L++ +R+DGR++ +R I +VG L HGSS+F RG+TQ++ VTLGT + Sbjct: 308 AVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D S F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ PY Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI G Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDILG 485 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT GITA QMD+KI G+S I+ AL QA+ GR+HIL +++ +++ Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAK 545 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598 + P++ M +P + I IG GGK I+ + +T + +++ G ++I + Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIIEILGT 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A I+ A E + ++ P + Y +VV++++FGAFV F +D L+HIS++S +RV Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682 K D +KEGD + VK L D + K Sbjct: 666 KIEDALKEGDIIEVKYLGIDPKTK 689 >gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda SM-A87] gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda SM-A87] Length = 731 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 294/699 (42%), Positives = 441/699 (63%), Gaps = 19/699 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + DFFPLT++Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYT-PTTMDFFPLTLDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGGY +RE+RP+ EIL+ R++DR +RPLF K YK ETQV+I +M HD E P ++ + Sbjct: 74 FPGGYFKREARPSSEEILVMRLVDRVLRPLFPKDYKFETQVMIQLMSHDPEVMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ +S +PFE P+ +V I+G+ V+NP ++ ++ LD+ V + D+V+MVE E Sbjct: 134 AASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQLEKADLDMMVGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE+ + +AI F H K EA ++L K K I + ++ +E++ Q I + Sbjct: 194 MDEISEEEMAEAIKFAHEAIKVQCEAQTRLRKAAGK--TEIREYEVTEEDEDLKQKIYDA 251 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + K+ R + I +LK+++++ FS E + I S F D K VR V Sbjct: 252 VYQKAYDVAKQGSTKHERSEAISNLKEEVLAMFSEEELEEKQKLISSYFSDAHKKAVRDV 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L + +R+DGR + +R I +V L HGSS+F RG+TQA+ VTLGT + VD Sbjct: 312 VLKEGIRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREANQVDLP 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + +F +HYNF P +TGE + SRREIGHG LA+RA+ ++P + PYT+R+V Sbjct: 372 TQQGEENFYLHYNFPPFSTGEAYPIRGTSRREIGHGNLAQRALKGMIP--SDCPYTVRVV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GSSSMATVC ++ALMDAG+ + KPV+GIAMGL+ DG+DF +LSDI GDEDHL Sbjct: 430 SEVLESNGSSSMATVCAGTMALMDAGIQLKKPVSGIAMGLISDGEDFAVLSDILGDEDHL 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+KI G+S I+V AL+QA+ GRLHIL +++ ++E + Sbjct: 490 GDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLTDTIAEPNANV 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601 +P++ IP D I +IG GGKVI+ + ++T ++ I++D G V+I +S Sbjct: 550 KAHSPKIITRRIPGDYIGALIGPGGKVIQELQKETKTEIVINEDPVTEEGIVEILGTSQE 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659 I+ I SIT PE +Y+ +V+K++DFGA V + A + L+HIS+L+ ER Sbjct: 610 GIDKVLAKIDSITFKPEKGSVYEVKVIKLLDFGAVVEYIEAPGNEVLLHISELAWERTNN 669 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKP 697 +DVV GD + VK D + K K+S K + +P Sbjct: 670 VTDVVNLGDVIDVKYFGVDPKTRKEKVSRKALLPRPERP 708 >gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax marinus SJ] Length = 709 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 286/702 (40%), Positives = 426/702 (60%), Gaps = 19/702 (2%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 D + + G+ + +ETGR+A+Q+DG+VL + T VL TV +KDGQDFFPL V Sbjct: 4 DKKVYSLNYGGKEVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPLLVE 63 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y E+ Y+ GK GG+L+RE RP+ +E L +R+IDR +RPLF + Y +T V NV+ + Sbjct: 64 YTEKFYSAGKFVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSD 123 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 E V++ + ASAAL +S +PF GP+ +V ++G+ VLNP + + L++ V+ + Sbjct: 124 EGDAEVLAGLGASAALTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAVAAS 183 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SK 239 DA+LMVE EA + E VL+AI FGH+ K ++ + ++ + I ++F + Sbjct: 184 ADAILMVEGEAKVVPEKEVLEAIYFGHDNIKEYVKLMEQM-----RSEIGRPKREFVSAA 238 Query: 240 LEEEMSQMIKEDL----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-------E 288 E M ++ D R I +K R + + L+K++ + S ++ Sbjct: 239 ANETMMSKMRSDFASGARNCISIDDKMDRQRAVKALEKEVKNAMSEAPEAFGLTADDSFG 298 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E +++ +++R +L+++ R+ GR VR+I + LL+ HGSSLF RG+TQ Sbjct: 299 KEAYKGVDELLYEMMRGDILNEEKRIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQV 358 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VT+G + E+ DS+ GT+ F +HYNF P + GE + RRE+GHG LA RA Sbjct: 359 MAAVTIGGKHGEKMEDSIRGTEFQKFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERA 418 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + V+P +F YT R+V E+ ES+GSSSM +VC +S+ALMDAGVPIS PVAGIAMGL+ Sbjct: 419 VKAVMPSEEEFAYTTRVVCEVMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLIT 478 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 DG+ F +L+DI GDEDHLG MDFKVAGT GITA+QMD+KI G++ I+ +++QA+ GR Sbjct: 479 DGERFKVLTDILGDEDHLGDMDFKVAGTVDGITAIQMDIKITGLTREIVEKSIEQAREGR 538 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 LHIL EM+K +S R + + PR+ + IP D+I +IG GGK I+ + E V I Sbjct: 539 LHILGEMAKTISTKRAEFKDGVPRIVTVQIPVDKIGALIGPGGKNIKKLQEDFDVTVEIT 598 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++G VK+ + + I + PEV IY+ VV + ++GAFV GLVH Sbjct: 599 EEGLVKVLGTDTDILNNCVASIDLQINGPEVGSIYEAVVVTIKEYGAFVDIIPGVSGLVH 658 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +S+LS ERV S+ + EGD V VK+++ D G++KLS K V Sbjct: 659 VSELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAV 700 >gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185] gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185] Length = 708 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E D Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YDHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + + ++ + FS E I Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAICEEFKAQFSEEELEEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D++ + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VSEI ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I++ Sbjct: 537 ILDKIAETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596 Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 EGVGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVL 701 >gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] Length = 712 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 282/680 (41%), Positives = 429/680 (63%), Gaps = 3/680 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ ++ G+ A Q++G G+T +L T V ++G DFFPL ++QE+ YAVGK Sbjct: 12 GKDFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+L+RE + ++ LISR +DR +RPLF + Y N+ Q+I V+ D ++ P ++ + Sbjct: 72 IPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS AL +S +PF GPV V ++G+ ++NP +E ++ +L+L V+G + A+ MVE Sbjct: 132 GASIALGISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTLELTVAGKKGAINMVEAG 191 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 A +LSE+ +L+A++ E + + I + KE I + + ++L+ ++S+ +ED Sbjct: 192 ACELSEEEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQIEETELDRKISEDFEED 251 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311 ++ S +K R I ++++ + + +E EI ++I K VR ++ K Sbjct: 252 IKNSIRTTDKTEREANIFRIEEEAKEKYLEAYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370 +R DGRD +R +SA+ GLL R HGS LF RG TQ + VVTLG+ D Q +D L+ + Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 + ++ YNF P G++ + P RREIGHGRLA RA+ PVLP FPYT+R+VSE+ Sbjct: 371 QKRYIHQYNFPPFCVGDIRPLRGPGRREIGHGRLAERALIPVLPDEKDFPYTIRVVSEVL 430 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ IL+DI G EDHLG MD Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIRKPVAGIAMGLIKEDSSISILTDIQGLEDHLGDMD 490 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+QMDMKI GI+ ++ +L A R+ IL+ + + + R + E+ Sbjct: 491 FKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIEAAIDKPRDDISEYA 550 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + I P+++R+VIG GGK I I++ TG K+ +DDG + +AS+ + A EMI Sbjct: 551 PRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASNDGESGKKAIEMI 610 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 ++I P+ +Y G+VV++M+FGAFV ++GL+HISQ+ RV K D +K GD V Sbjct: 611 KAIVTDPKAGDVYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDELKVGDEV 670 Query: 671 WVKLLDFDDRGKIKLSMKVV 690 VK+ + D +G+I LS K + Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690 >gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium erythraeum IMS101] gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum IMS101] Length = 717 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 289/694 (41%), Positives = 433/694 (62%), Gaps = 19/694 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G A Q+ GAV+ G+T VL T + ++G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAKG-REGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP E L SR+IDR +RPLF +++ Q++ + D E P V Sbjct: 67 AGGKIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S A++L+ LPF GP+ +V + +++NP E G LDL V+G+ V+M Sbjct: 127 LAVTGSSVAVLLAKLPFYGPMAAVRVGLVGDDFIINPTYREVKNGDLDLVVAGSPQGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ +I+A I+++ ++ EP +D + ++E Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVCDLIQAQREIIAEMGIELVELEPPEVDPTLENYIKE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS--SWNEGE---IVSV 294 + ++ IKE L S + +K R +++D++K + ++ E + + E E + + Sbjct: 247 KATEQIKEIL--SQYDLDKNQRDEKLDEIKDSLAESITELPEEEAVRAMVESESMLLGNA 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+ + K++R ++ + +R+DGR + VR +S +VG+L R HGSSLF RG TQ + VT Sbjct: 305 FKSVTKKLMRQQIVAEGIRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLTQVMSAVT 364 Query: 354 LGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 LGT D Q D L ++ HYNF P + GE + P RREIGHG LA RA+ PV Sbjct: 365 LGTPGDAQELADDLHPQDEKRYLHHYNFPPFSVGETKPLRQPGRREIGHGALAERALIPV 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P++ FPY +R+VSE+ S+GS+SM +VC S+L LMDAGVPI KPV+G AMGL+K+ ++ Sbjct: 425 IPKSDIFPYVIRVVSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMGLIKEDEE 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+ ++ A+ QAK R+HIL Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPIEVIADAIHQAKPARIHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 ++M VL R + + PR+ I P+ I VIG GGK I+GI E+TG K++IDDDGT Sbjct: 545 DKMLSVLDLPRPDMSPYAPRLLSFKIDPEMIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V IA++ + + A +I+ +T +Y G+V +++ GAFV ++G+VHISQ+ Sbjct: 605 VTIAAADGEKAKQACNIIQGMTKKLNPGDVYVGRVTRIIPIGAFVEVFAGKEGMVHISQI 664 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 + RV K D + GD V VK+ + D +G++ L+ Sbjct: 665 ADYRVGKVEDELAIGDEVIVKVREIDSKGRVNLT 698 >gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus TCF52B] gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus TCF52B] Length = 697 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/697 (40%), Positives = 444/697 (63%), Gaps = 29/697 (4%) Query: 10 EWA----GRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQ 64 EW GR + ++ G++A+QS G+V +G++VVLAT + DR++ +G DF PLTV YQ Sbjct: 5 EWTKELFGRKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTI-EGVDFVPLTVEYQ 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K +N+ Q+I+ V+ D + Sbjct: 64 EKFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNT 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V ++AAS AL +S +PFEG V G ++ Y++G++V+ P ++ ++ LD+ V+G++D Sbjct: 124 PPDVTGIIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDF 237 A+ MVE EA +++E+ +++A++ H+ K +IE ++ KM +EP ++ Sbjct: 184 AITMVEGEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETL-I 242 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY------FSSEHSSWNEGEI 291 K EE +S+ E+LR I EK R ++ + + +++ + E + Sbjct: 243 GKFEEMISE---EELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLL 299 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 F++ K++R +++++ +R DGR + +R I+ +VG+L RTHGS+LF RG+TQ++ + Sbjct: 300 KEYFDERTKKLMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGI 359 Query: 352 VTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 VTLG +EQ VD++ GT+R F++HYNF P + GEV + P RREIGHG LA RA+ Sbjct: 360 VTLGAPMEEQIVDTIMEEGTKR--FILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERAL 417 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 V+P +FPY +R+VSEI ES+GSSSMATVC SLALMDAGVPI VAG+AMGL+ + Sbjct: 418 KAVVPSEEEFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIE 477 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 ++L+DI G EDH G MDFKVAGT +GITA QMD K+ G+ E ++ ALQQAK R+ Sbjct: 478 DGQEVVLTDIQGLEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARM 537 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL+ M + + R L + P + + I P ++ +IG GGKVI+ I+++ +++IDD Sbjct: 538 KILDIMFNTIEKPRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDD 597 Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 G V I ++ A E I++IT EV +++G++ ++ +G FV + GL H Sbjct: 598 TTGKVSIYGKDQKKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAH 657 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 S+L E + K GDT+ V +++ D+ G+I+L Sbjct: 658 SSKLG-EDSKNFKEKYKIGDTIKVIVVNIDENGRIQL 693 >gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu str. Miyayama] gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu str. Miyayama] Length = 757 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 304/715 (42%), Positives = 438/715 (61%), Gaps = 40/715 (5%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDF- 56 MF++ +EW G+ L ++TG +ARQ+ GA +YG TVVLA V + + K D Sbjct: 1 MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60 Query: 57 -FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 L N+ ++YA+G+IP G+ +RE + +E E+L SR++DR++RPL + NE ++ Sbjct: 61 GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120 Query: 116 NVMQH-DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174 ++ H + + P + +++AASAAL LSG+PF GPV+G VD + G V + E +G L Sbjct: 121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVD-MRGSEVTCNEIRETEGGL 179 Query: 175 DLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPI--V 231 +LFV+ T+++V+MVE EA++ SE+ V++A+ KPV I++ K + +PI + Sbjct: 180 ELFVACTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPIGVL 239 Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSS 281 D+K+ E +R +C I K R ++ + + S Sbjct: 240 YDNKELC-----------EKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSD 288 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 + + E E++ + ++ ++VR +L++ +R DGR +R IS + L THGS+LF Sbjct: 289 D--GYAESEVLFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALF 346 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG TQ++VV TLG+ +DEQ +D + G +R ++HYNFLP A GEV + AP RREIGH Sbjct: 347 TRGGTQSLVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGH 406 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 GRLA +A+ VLP FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAG Sbjct: 407 GRLALKAVKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAG 466 Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 IAMGL+ DG +LSDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS + AL Sbjct: 467 IAMGLITDGVRSAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDAL 526 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 QA GRLHIL +M V+++ R L + P++ I D + VIG GGK IRGI T Sbjct: 527 NQALAGRLHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDT 586 Query: 582 GAKVNIDDDGTVKIAS---SSLAEIEAAREMIRSITD--VPE--VNKIYKGQVVKVMDFG 634 AK++ID + V I + +L E + +M +D VP+ + ++Y G++V V+DFG Sbjct: 587 SAKIDIDQNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFG 646 Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 FV ++GLVHIS++S RV EG V V++ D GKIKL+M++ Sbjct: 647 LFVVLPNKQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMRI 701 >gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. AS9601] gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. AS9601] Length = 721 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/709 (40%), Positives = 430/709 (60%), Gaps = 32/709 (4%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q+ G+V+ G+T +L T + K+ DF PL +Y+E+ + Sbjct: 8 ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT-KTAKKEPSDFLPLICDYEEKLF 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LI+R+IDR +RPLF +E Q++ + + D V Sbjct: 67 AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVPADV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A ++ +PF GP+ +V I ++LNP E ++G LD+ V+G+ D ++M Sbjct: 127 LAVTGASIATLVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245 +E ANQLSE ++AI FG+ EA+++L K ++E ++ D K E E Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVTELIK--SQEDLLQDLGIKQIKPSEPEED 237 Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEH-------------SSWN 287 + + L +C P +K+ K+ DL+ + + + +S N Sbjct: 238 KTLPSYLEKNCTKPIELVLKKFDLSKEERDLELEKIKTETQSKIDSLKDDNQVKVLTSEN 297 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346 E + S F+ + K++R+ +++ R+DGRD + VR ISA G+L +R HGS+LF RG T Sbjct: 298 EKLLHSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + TLGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RAI PVLP FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ PV+G AMGL Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G + IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+ +I+ A+++A+ Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R+HIL +M + + + L PR+ I P+ I VIG GG+ I+GI E+T K++ Sbjct: 538 ARIHILEKMQGAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+D G V IAS A E A+++I +T +I+ G V +++ GAFV ++G+ Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGM 657 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VHISQLS RV + DVV++GD V V++ + D RG+I L+++ V QN G Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706 >gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4] Length = 708 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 239 VNDEDLRKAVREVCYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S +I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 ILN++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1] gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22] gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC 2a] gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1] gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22] gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC 2a] gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens SD CC 1b] Length = 708 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEVIREEFKAQFSEEELDEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S +I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 ILN++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CMC 3f] gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22] gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CMC 3f] gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens XB1A] gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22] Length = 708 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S +I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 ILN++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701 >gi|331082947|ref|ZP_08332067.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 6_1_63FAA] gi|330399942|gb|EGG79600.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 6_1_63FAA] Length = 697 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/696 (40%), Positives = 427/696 (61%), Gaps = 19/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VL+T ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ + VM D E +P V Sbjct: 67 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPEV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V+M+ +S A +S +PF+GP Q+ +NG+ V+NP L + + S L L V+ T++ V+M Sbjct: 127 VAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E +++AI H + +I I K+ C KE S + + EE+ Sbjct: 187 IEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEK---HSYESCAVPEELFAA 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ + F EK VR + I + +K+ F +E+ W GE V + Q Sbjct: 244 IKEIVTPEEMEEAVFTDEKQVREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+ ++ R HGS++F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEA 359 Query: 361 QYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA RA+ PV+P +F Sbjct: 360 QRLDGLDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV + DD+++L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + K R +IL E M Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVME 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R + ++ P++ + I P++I +V+G GK I I+++TG K++IDD+G V I Sbjct: 540 KCIPAPRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + ++ A E I++IT + +I+ G+V+ + +FGAF+ F ++G+VHIS++S ER Sbjct: 600 GTDQHMMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + K DV+ GD V V L D G+I SMK V + Sbjct: 660 IEKVEDVLSIGDVVKVVCLGKDKMGRISFSMKDVPE 695 >gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii DSM 17565] gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii DSM 17565] Length = 708 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 292/709 (41%), Positives = 440/709 (62%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELA-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E ++SE +L+A+ H CK +E + K +E Sbjct: 185 ENIMMVEGEMQEVSEAELLEAMKVAHEAIKIHCKAQMELTEAVGKTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ +R +C+ K+ R + ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFEAIREEFKAQFSEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LTSVTLGTKMDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NPGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR+HILN++++ ++E R +L E PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GRMHILNKITETIAEPRAELKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVIT 592 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEIDGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVL 701 >gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea F0287] gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea F0287] Length = 735 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 279/684 (40%), Positives = 429/684 (62%), Gaps = 23/684 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G ++LATVV + + DF PLTV+Y+E+ A G+ Sbjct: 15 GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ EIL R++DR +RPLF K Y ETQV+I ++ HD P ++ + Sbjct: 75 FPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V +NG++++NP ++ + S +D+ V ++D V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241 +++SE + +AI F H KP IEA +LA+ K EP V + +K + Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E+ + KE+ K R ++ + +K++ ++ F+ E I F++ + + Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPIITRYFDEAEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L++ +R+DGR++ +R I +VG L HGSS+F RG+TQ++ VTLGT + Sbjct: 308 AVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D S F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ PY Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI G Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDILG 485 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT GITA QMD+KI G+S I+ AL QA+ GR+HIL +++ +++ Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAK 545 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598 + P++ M +P + I IG GGK I+ + +T + +++ G ++I + Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIIEILGT 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A I+ A E + ++ P + Y +VV++++FGAFV F +D L+HIS++S +RV Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682 K D +KEGD + VK L D + K Sbjct: 666 KIEDSLKEGDIIEVKYLGIDPKTK 689 >gi|226323220|ref|ZP_03798738.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758] gi|225208410|gb|EEG90764.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758] Length = 695 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 282/692 (40%), Positives = 427/692 (61%), Gaps = 17/692 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+A+Q++GAVL YG+TVVL+T ++G DFFPL+V Y E+ Sbjct: 6 EMELAGRTLRVDVGRVAKQANGAVLMHYGDTVVLSTATASDKPREGIDFFPLSVEYNEKL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + V+ + + SP Sbjct: 66 YAVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVLSVEQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ ++ A +S +PF+GP QV ++G+ V NP ++ + S L L V+ T++ V+ Sbjct: 126 LTAMLGSAIATAISDIPFDGPTASTQVGLVDGELVFNPTAEQKEKSDLALTVASTREKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E +L+AI H + VI I ++ C K D F+ EE Sbjct: 186 MIEAGANEVPEAKMLEAIFAAHEVNQKVIAFIDQIVAECGKPK--HDYVSFAVPEELFEA 243 Query: 247 MIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQA 300 + K E++ V+ F +K R + I + +K+ F +++ W GE V + Q Sbjct: 244 IQKIVTPEEMEVAVFTDDKQTREENIRKITEKLEEAF-ADNEEWLAKLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVR ++L R DGR E +R ++A++ L+ R HGS++F RG TQ + TL + Sbjct: 300 KVVRKMILKDHKRPDGRAIEEIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q VD L ++ + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKVDGLDESETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV DD+++L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISCGLVTGATDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + ++ R++IL+E M+ Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTRKARVYILDEVMA 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++E R Q+G++ P++ M I P +I V+G GK I I+E+TG K++I D+G+V I Sbjct: 540 KTIAEPRAQVGKYAPKIIQMNIDPAKIGEVVGQRGKTINAIIEKTGVKIDITDEGSVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +E AR+MI +I E + +G VV + +FGAF+ F ++G+VHIS+++ +R Sbjct: 600 GVDADSMEQARKMIATIVTDFEAGMVLEGDVVSIKEFGAFIEFAPGKEGMVHISKIAKQR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + DV+ GD V V L D G++ S+K Sbjct: 660 IDHVEDVLSIGDHVKVVCLGKDKMGRLSFSIK 691 >gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 747 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/684 (41%), Positives = 428/684 (62%), Gaps = 23/684 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G ++LATVV R + DF PLTV+Y+E+ A G+ Sbjct: 15 GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ EIL R++DR +RPLF K Y ETQV+I ++ HD P ++ + Sbjct: 75 FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V +NG++++NP ++ + S +D+ V ++D V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241 +++SE + +AI F H KP IEA +LA+ K EP V + +K + Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E+ + KE+ K R ++ + +K++ ++ F+ E I F D + + Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPLITRYFGDAEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L++ +R+DGR++ +R I +VG L HGSS+F RG+TQ++ VTLGT + Sbjct: 308 AVRNLILEENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D S F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ PY Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ DGD + +LSDI G Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYAVLSDILG 485 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT GITA QMD+KI G+S I+ AL QA+ GR+HIL +++ +++ Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAQ 545 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598 + P++ M +P + I IG GGK I+ + +T + +++ G V+I + Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELGIVEILGT 605 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A I+ A E + ++ P + Y +VV++++FGAFV F +D L+HIS++S +RV Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682 K D +KEGD + VK L D + K Sbjct: 666 KIEDALKEGDIIEVKYLGIDPKTK 689 >gi|253580814|ref|ZP_04858077.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847884|gb|EES75851.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 697 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 282/696 (40%), Positives = 424/696 (60%), Gaps = 19/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ R+A+Q++GA L YG+T VL+T + ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDINRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ ++ VM D E +P + Sbjct: 67 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLM 187 +M+ +S A +S +PF+GP QV ING+Y++NP + +D L L V+ T++ V+M Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGLINGEYIINPTMAQKDVSDLQLTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E A ++ ED +++AI H + +I+ I K+ + C K S + + EE+ Sbjct: 187 IEAGAKEVPEDKMIEAIYKAHEVNQEIIKFIDKIVEECGKPK---HSYESCAVPEELFAA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IKE ++ V+ F +K R + I + +K+ F ++ W GE V + Q Sbjct: 244 IKEVVPPAEMEVAVFSDDKQTREENIRQVTEKLKEAF-ADKEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+ ++ R HGS++F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAITQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLAEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QKLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +IL E M Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVME 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++ R +GE+ P++ + I P +I +V+G GK I I+E+TG K++I D+G V I Sbjct: 540 KCIAAPRTTVGEYAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDEGAVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A M++ I E +I+ G+VV + +FGAFV F ++G+VHIS++ ER Sbjct: 600 GVDQKSMDEAANMVKIIATDFEAGQIFTGKVVSIKEFGAFVEFAPGKEGMVHISKICKER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + + DV+ GD V V L D G+I SMK V + Sbjct: 660 INRVEDVLTLGDKVKVICLGKDKMGRISFSMKDVPE 695 >gi|260589519|ref|ZP_05855432.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM 20583] gi|260540087|gb|EEX20656.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM 20583] Length = 691 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/696 (40%), Positives = 427/696 (61%), Gaps = 19/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VL+T ++G DFFPL+V Y+E+ Y Sbjct: 1 MELAGRILTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ + VM D E +P V Sbjct: 61 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPEV 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 V+M+ +S A +S +PF+GP Q+ +NG+ V+NP L + + S L L V+ T++ V+M Sbjct: 121 VAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTREKVIM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E +++AI H + +I I K+ C KE S + + EE+ Sbjct: 181 IEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEK---HSYESCAVPEELFAA 237 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ + F EK VR + I + +K+ F +E+ W GE V + Q Sbjct: 238 IKEIVTPEEMEEAVFTDEKQVREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---QK 293 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+ ++ R HGS++F RG TQ + TL + Sbjct: 294 KTVRKMILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEA 353 Query: 361 QYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA RA+ PV+P +F Sbjct: 354 QRLDGLDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEF 413 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV + DD+++L+ Sbjct: 414 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLT 473 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + K R +IL E M Sbjct: 474 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVME 533 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K + R + ++ P++ + I P++I +V+G GK I I+++TG K++IDD+G V I Sbjct: 534 KCIPAPRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSIC 593 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + ++ A E I++IT + +I+ G+V+ + +FGAF+ F ++G+VHIS++S ER Sbjct: 594 GTDQHMMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKER 653 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + K DV+ GD V V L D G+I SMK V + Sbjct: 654 IEKVEDVLSIGDVVKVVCLGKDKMGRISFSMKDVPE 689 >gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174] gi|149830933|gb|EDM86023.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174] Length = 691 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/696 (40%), Positives = 431/696 (61%), Gaps = 19/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VL+T + ++G DFFPL+V Y+E+ Y Sbjct: 1 MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ ++ VM D E +P + Sbjct: 61 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S A +S +PF+GP QV I+G++V+NP L + + S L L V+ T++ V+M Sbjct: 121 PAMLGSSIATCISDIPFDGPCATTQVGLIDGEFVINPSLAQKELSDLQLTVASTREKVIM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H+ + +I I K+ C KE + S + EE+ + Sbjct: 181 IEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYAS---CAVPEELFEA 237 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ + F +K R + I ++ ++ F +++ W GE V + Q Sbjct: 238 IKKIVPPEEMEEAVFTDDKQTREENIREITARLQDAF-ADNEEWLAVLGEAVYQY---QK 293 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V ++ R HGS++F RG TQ + TL + Sbjct: 294 KTVRKMILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEA 353 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 354 QRIDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEF 413 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV DD+I+L+ Sbjct: 414 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLT 473 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +IL E M Sbjct: 474 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 533 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++ R + ++ P++ + I P +I +V+G GK I I+E+TG +++I D+G V I Sbjct: 534 KCIAAPRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSIC 593 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A++MI++I E +I++G VV + +FGAFV F ++G+VHIS++S R Sbjct: 594 GVDQHGMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHR 653 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + + DV+ GD V V + D G++ S+K V + Sbjct: 654 INRVEDVLTLGDKVKVICMGKDKMGRMSFSIKDVPE 689 >gi|300868336|ref|ZP_07112962.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC 6506] gi|300333629|emb|CBN58148.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC 6506] Length = 714 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 292/695 (42%), Positives = 422/695 (60%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GAVL G+T VL T + ++G DF PL V+Y+ER Y Sbjct: 8 ISFDGRDIRLKIGLLAPQAGGAVLIQSGDTSVLVTATRAQG-REGIDFLPLLVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGG+LRRE RP E L R+IDR +RPLF +++ QV+ + D E P V Sbjct: 67 AGGKIPGGFLRREGRPPEKVTLTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A++L+ +PF GP+ +V + +++NP E G LDL V+G+ D V+M Sbjct: 127 LAVTGASVAVLLAKMPFYGPMAAVRVGLVGDDFIINPTYKEIKTGELDLVVAGSPDGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ +I+A ++ ++ +E D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAASDLIQAQREIMAELGIELIREERPETDPTLENFIRD 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEGEIVS 293 IK+ L S F +K R +D++K V +E + + I + Sbjct: 247 RAEAPIKQIL--SQFELDKKARDTALDEVKAAAVVAAIAELAEDDPVRVAAGVDSKAIAN 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352 VF+D+ K++R +++ VR+DGR + VR +S +V +L R HGSSLF RG TQ + V Sbjct: 305 VFKDVTKKLMRRQIVEDGVRVDGRKLDEVRPVSCRVSVLPSRVHGSSLFNRGLTQVMSAV 364 Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q + D L ++ HYNF P + GE M +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQDLGDDLHPQDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAILP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP A FPY +R+VSE+ S+GS+SM +VC S+LALMDAGVP+ +PV+G AMGL+K+GD Sbjct: 425 VLPPQADFPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPLIQPVSGAAMGLIKEGD 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+ ++ A+ +AK RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLPLQVIAEAIHKAKPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + + R + F PR+ + I P+ I VIG GGK I+ I E+TG K++IDDDG Sbjct: 545 LEKMLSTIDKPRTTMSPFAPRLLTLKIEPEFIGLVIGPGGKTIKAITEETGVKIDIDDDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA + A +I+ +T +Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIAGNDSERAARAYNIIQGMTRKLNAGDVYVGRVTRIIPIGAFVEILPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K D + D V VK+ + D++G+I L+ Sbjct: 665 LADYRVGKVEDELAVADEVIVKVREIDNKGRINLT 699 >gi|291519474|emb|CBK74695.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 693 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 285/699 (40%), Positives = 430/699 (61%), Gaps = 19/699 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T ++ AGR L+++ GR+A Q++GA YG+T VL+T +DG DFFPL+V + Sbjct: 1 MKTFTMDLAGRTLRVDIGRVAAQANGAAFIQYGDTTVLSTATASDKPRDGIDFFPLSVEF 60 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+TYAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+ + VM D + Sbjct: 61 EEKTYAVGKIPGGFNKREGKASENSVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDPQ 120 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P +V+M+ A+ A +S +PF+GP Q+ I+G++++NP ++ D+G L L V+ T+ Sbjct: 121 CRPELVAMLGAAIATCISDIPFDGPCAMTQMGMIDGEFIVNPSQEQWDKGDLKLTVASTR 180 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237 + V+M+E AN + ED +++AI H+ + VI I ++ K C K I + F Sbjct: 181 EKVIMIEAGANIIPEDKMIEAIYKCHDVNQTVIAFIDEMVKECGKPKHEYTSCAIPEELF 240 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295 +K++E + E+ + F EK VR + I + +++ F +E+ W GE + + Sbjct: 241 AKMKEIVPPAEMEE---AVFTDEKQVREENIRQITERLEEAF-AENEEWLAVLGEAIYQY 296 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E K VR ++L R DGR+ +R ++A+V ++ R HGSS+F RG TQ VVTL Sbjct: 297 E---KKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSSMFTRGQTQICDVVTLA 353 Query: 356 TREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L +M HYNF + GE P RREIGHG LA RA+ PVLP Sbjct: 354 PLSEAQKIDGLDAFVTEKRYMHHYNFPAYSVGETKPSRGPGRREIGHGALAERALLPVLP 413 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDD 472 +FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV DD Sbjct: 414 TPEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDD 473 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F++L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + R I+ Sbjct: 474 FVLLTDIQGLEDFFGDMDFKVTGTKEGITAIQMDIKIHGLTRPIVEGAIARCREARFFIM 533 Query: 533 -NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 N MSK ++E R Q+GE+ P++ ++I P++I +V+G GK I I+ + K++I DDG Sbjct: 534 DNCMSKAIAEPRPQVGEYAPKIIQLSIDPEKIGDVVGQRGKTINEIIARCDVKIDITDDG 593 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I + A+++ A+ MI IT E ++I G+VV + +FGAF+ F ++G+VHIS+ Sbjct: 594 NVSICGTDAAKMDEAKRMIEIITTDFEKDQILTGKVVSIKEFGAFIEFAPGKEGMVHISK 653 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 ++ ER+ + DV+ GDTV V L D G+I S+K V Sbjct: 654 IAKERIDRVEDVLTLGDTVKVVCLGKDKMGRISFSIKDV 692 >gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium nodosum Rt17-B1] gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum Rt17-B1] Length = 693 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/692 (40%), Positives = 440/692 (63%), Gaps = 22/692 (3%) Query: 10 EWA----GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 EW GR + G++A+QS G++ A +G++VVLATV ++ +G DF PLTV + E Sbjct: 3 EWRKNLFGREWLFQHGKVAKQSAGSIWARFGDSVVLATVNVSDNVVEGIDFVPLTVEFME 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+++RE +P+E+ IL SR+IDR IRPLF K +NE QVI+ V+ D Sbjct: 63 KFYAAGKIPGGFVKREGKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCP 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 V+ + AAS AL +S +PF+G V G Q+ Y++GQ+++ P ++ ++ +D+ V+GT+DA Sbjct: 123 TDVLGITAASLALNISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGTKDA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243 + MVE EA +++E+ +L A++ H K ++ ++ K E + + ++ +L E+ Sbjct: 183 ITMVEGEAKEVTEEEMLQALMTAHEAIKQIVAFQEEVIKEFNVEKMPLPEPKYNVELVEK 242 Query: 244 MSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSV-----FE 296 + I +L F K R + D+ + +V +F + E E ++ ++ Sbjct: 243 FVEYIDMTELEKRIFARGKQERAEMADEYYESIVQKFFEDNNIPEEEQEEYAIPLKEKYD 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I K++R +++++ +R DGR + +R I+ +VGLL RTHGSSLF RG+TQ++ +VTLG+ Sbjct: 303 EISKKLMRKIIIERGLRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGS 362 Query: 357 REDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 +EQ +D+L GT+R F++HYNF P +TGEV + PSRREIGHG LA RA+ ++P Sbjct: 363 PAEEQIIDTLIEEGTKR--FILHYNFPPFSTGEVKPLRGPSRREIGHGHLAERAVKAIIP 420 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPY +R+VSEI ES+GSSSMATVC +SLALMDAGVP K VAG+AMGL+ + + Sbjct: 421 PEDEFPYVIRVVSEILESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILEEGKGV 480 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDH G MDFKVAGT GITA QMD K+ G+SE ++ AL QAK R+ IL++ Sbjct: 481 ILTDIIGLEDHWGDMDFKVAGTKDGITAFQMDCKVSGVSEELLRQALYQAKEARMFILDK 540 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTV 593 + + +SE R +L + PR+ I P + +IG GGK I+ I++ ++++DD G V Sbjct: 541 LYETISEPRKELSPYAPRISWFFIDPTRSGELIGPGGKTIKSIIKMFDVEISLDDSTGKV 600 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++ +++ A E I+++ + +Y G+V +V ++G FV + GLVH S+L Sbjct: 601 TVSGVDAEKVQEAVEYIQNMFRDISIGDLYTGKVTRVENYGIFVEIMPGKIGLVHSSKLG 660 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V TS K GD + V++++ DD G+++ Sbjct: 661 N--VKPTS--FKVGDKIKVEVINIDDAGRLQF 688 >gi|291523665|emb|CBK81958.1| polyribonucleotide nucleotidyltransferase [Coprococcus catus GD/7] Length = 697 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/695 (40%), Positives = 425/695 (61%), Gaps = 19/695 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 + +E AGR L++E G +A Q++GA L YG+T VL+T +DG DFFPL+V ++E Sbjct: 7 SFSMELAGRTLRVEVGHVAAQANGAALMYYGDTCVLSTATASEKPRDGIDFFPLSVEFEE 66 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + Y+VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D S Sbjct: 67 KMYSVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLCVDQTCS 126 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +M+ ++ A +S +PF+GP QV ING++++NP ++ S L L V+ T++ Sbjct: 127 PELTAMLGSAIATCISDIPFDGPCAMTQVGMINGEFIINPSNEQKSVSDLALTVASTREK 186 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEE 242 V+M+E AN++ ED +++AI H+ + +I+ I ++ C KE KD+ + E Sbjct: 187 VIMIEAGANEVPEDKMIEAIYAAHDVNQEIIKFIDQIVAECGKE-----KKDYEHYAIPE 241 Query: 243 EMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 E++ +K E + + F EK R I +K K+ F ++ W +V++ Sbjct: 242 ELNAAMKELFPPEAMEEAVFADEKQTRDANIRVIKDKLAEAF-ADKEEWLPLIDDAVYQ- 299 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 Q K VR ++L R DGR + +R ++A++ L RTHGS++F RG TQ + TL Sbjct: 300 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDLFARTHGSAMFTRGQTQICTITTLAPL 359 Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q VD L+ +M HYNF + GE P RREIGHG LA RA+ PVLP Sbjct: 360 SDAQKVDGLNEFVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474 +FPY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV DD++ Sbjct: 420 EEFPYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYL 479 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K+ R +IL E Sbjct: 480 VLTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKQAREYILTE 539 Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 + +SE R ++GEF P+++ + I P +I +V+G GKVI I+++TG K++I DDG V Sbjct: 540 IIEPCISEPRKEVGEFAPKIQQIKIDPSKIGDVVGQKGKVINQIIDETGVKIDITDDGAV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I I+ A +MI I E +IY G+VV + +FGAF+ F ++G+VHIS+L Sbjct: 600 SICGVDKVGIQKAIDMITMIVSDFEEGRIYTGKVVSIKEFGAFLEFAPGKEGMVHISKLD 659 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +R+ DV+ GD + VK + D G+I S K Sbjct: 660 KKRINHVEDVLTLGDVIKVKCMGKDKMGRISFSKK 694 >gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC 43644] gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC 43644] Length = 766 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 293/701 (41%), Positives = 427/701 (60%), Gaps = 13/701 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE + L LETG++A+Q+ G+V+ G T+ L VV ++G DFFPL V Y+E+ Sbjct: 18 VEATIGDKLLILETGKLAKQATGSVVVQVGGTMSLVAVVTAPG-REGLDFFPLQVEYREK 76 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GK PGG+++RE RPT +IL SR+IDR IRPLF + Y++E Q+ + + D + P Sbjct: 77 VYAAGKFPGGFIKREGRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQASPISADRINDP 136 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V+SM+ ASAAL L+ PF GPV +V I+G+ V P +E +Q LDL V+ T + Sbjct: 137 DVLSMIGASAALCLTPAPFLGPVGSIRVGRIDGRLVPLPTAEEMEQSDLDLVVASTTSKI 196 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 +M+E +L E + DAI+ H + VI +L P+ L + + Sbjct: 197 VMIEGFGQELPESEMFDAIMKAHEYNQAVIALQHELRAAVGLPPMEPPPPRHDPLVDYLY 256 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSVFED 297 Q +++R + I K R +D L+ ++V+ ++ + E + + F++ Sbjct: 257 QRYGDEIRQAKRIVAKLERYAVMDQLRARVVAETTAAPVPGVGDPETPPTELAVKAAFKE 316 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + +VVR ++LD +R DGR + +R IS +VGLL + HGS+LF RG+TQA+V LGT Sbjct: 317 AETRVVRAMILDG-LRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTA 375 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 DEQ +D + FM+ YN A GEV + P RREIGHG LA R++ PVLP A Sbjct: 376 ADEQRIDGIMDEYTKKFMLDYNMPSFAVGEVRPIRGPGRREIGHGALAERSVAPVLPDPA 435 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475 +FPYT+R+VS+I ES+GSSSMA+VCG++L+LMDAGVPIS PV GI++GLV D D F++ Sbjct: 436 RFPYTIRVVSDILESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVWDEPTDRFVL 495 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI GDEDH G MDFKVAGT G+T +Q+D+K GIS I+ L QA R+ IL M Sbjct: 496 LTDIIGDEDHYGDMDFKVAGTQRGVTGIQLDLKNLGISPRIVRETLDQALEARMEILRTM 555 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + + R + E PR+ + + P++I +IG GGK IR + E+TGAK+ ID+ G + I Sbjct: 556 LRSIKRPRDHISENAPRLIQIQVNPEKIGLIIGPGGKTIRRLEEETGAKIEIDNSGVITI 615 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + AR+ I+ +T+ +V KIY G+V + DFGAFV +DGLVHIS+L+ Sbjct: 616 SCVRAEGAQDARDRIQGMTEGVQVGKIYDGRVSSIKDFGAFVEILPGKDGLVHISELTEG 675 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V+ +DV K GD + VK++ D++ ++KLS K G+ Sbjct: 676 YVSSVADVCKVGDVMPVKVILVDEQDRVKLSRKAALAELGQ 716 >gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM 17393] gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM 17393] Length = 714 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 291/701 (41%), Positives = 438/701 (62%), Gaps = 19/701 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V ING++V+NP D+ ++ +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++MVE E +++SE +L+A+ H K +A +LA+ V +E Sbjct: 185 ENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCQAQKELAEAVGS--TVKREYCHEVNDE 242 Query: 243 EMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E+ + + + + K+ R D ++++ + FS E S I + Sbjct: 243 ELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELSEKAALIDRYYH 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + +R +LD+ R+DGR ++ +R I +++ L HGS++F RG+TQ++ VTLGT Sbjct: 303 DVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATVTLGT 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ +P Sbjct: 363 KLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQIP-- 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474 A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I +PV+GIAMGL+K+ D + Sbjct: 421 ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIAMGLIKNPGEDKYA 480 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S +I+ AL QAK GR+HIL + Sbjct: 481 VLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFDILERALNQAKEGRMHILGK 540 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDG 591 + + + E R +L PR+E M IP + I +IG GGK+I+G+ E+TGA + I D+ G Sbjct: 541 ILETIQEPREELKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEVDNIG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++I+ ++ I+ A +I+ I VPEV ++YKG+V VM +GAFV F +DGL+HIS+ Sbjct: 601 RIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEFLPGKDGLLHISE 660 Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 661 IDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVL 701 >gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM 22836] Length = 723 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 291/696 (41%), Positives = 435/696 (62%), Gaps = 26/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G T++LATV + G DF PL V Y+E+ A G+ Sbjct: 14 GRTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPLQVEYKEKFAAYGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE R ++ EIL+ R++DR++RPLF Y E V + + D E P ++ + Sbjct: 74 FPGGFQRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDGEDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++GQ++LNP + + +D+ V T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQLAKADMDIMVGATIDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +L+AI F H K +A +L ++ +++S E + +++D Sbjct: 194 MKEVSEVEMLEAIKFAHEAIKVQCQAQIELMELVG----TTKKREYS--HETNDEDLRKD 247 Query: 252 LRVSCFIPEKYV-------RCKQIDDLKKKMVSYFS--SEHSSWNEGEIVS-VFEDIQAK 301 + C+ V + +++D+ K Y + +E +G ++S + D++ + Sbjct: 248 VWEKCYDKAYAVAASGNTNKHERVDNFKAIEEEYKANLTEEELAEKGALISRYYHDVEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I ++V L HGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 308 AMRRSILDEGKRLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEK 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + + F++HYNF P +TG+ RREIGHG LA RA+ P++P + +PY Sbjct: 368 IIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMIP--SDYPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479 +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV GIAMGL+ K G +F +LSDI Sbjct: 426 VIRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVTGIAMGLISEKKGTNFAVLSDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QA+ GRLHI+ ++ + L Sbjct: 486 LGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHIMGKILETL 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVKIA 596 E R E PR+E++ I + I VIG GGK+I+GI E+TGA V ID G V+++ Sbjct: 546 PEPRADFKENAPRIEVLIISKEFIGAVIGPGGKIIQGIQEETGATVTIEEIDGYGRVEVS 605 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +++ I+AA IR I VPEV ++Y +V VM +GAF F +DGL+HIS++S +R Sbjct: 606 ATNKTAIDAAMAKIRGIVTVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLHISEISWDR 665 Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 V V +KEGD + VKL+D D + GK KLS KV+ Sbjct: 666 VEDMEKVGLKEGDKIEVKLIDIDPKTGKFKLSRKVL 701 >gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 897 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 294/747 (39%), Positives = 444/747 (59%), Gaps = 65/747 (8%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I R + +ETG I RQ+ G+V+ T GET+V +V + D DFFP++V+YQE Sbjct: 90 SVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHYQE 149 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+L+ R+IDR +RP K + ETQ++ V +D S Sbjct: 150 RLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGLHS 209 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P V++ AA A+ LS +P + + G ++ IN Q+V+NP ++ + S LDL ++GT A Sbjct: 210 PDCVAVTAAGIAMALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMEDSELDLMMAGTDSA 269 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK----EPIVIDSKDFSKL 240 +LM+E N L+E+ +L A+ G + + +AI L + C K E I + + + Sbjct: 270 ILMIEGFCNFLTEEKLLQAVETGQAAIREICKAIDVLVQTCGKKKMVEAINLPPTELYRH 329 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV------SYFSSEHSS--------- 285 E++S E+L + I EK +R K + L++K++ Y S + S Sbjct: 330 VEDLS---GEELVKALQIKEKILRRKALSALEEKVIMILSEQGYVSKDELSGTIENLADI 386 Query: 286 ---------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKV 312 ++E ++ VF+++ +K +R +++ + Sbjct: 387 VEEEDEDEVIEDGEVDEGDVHIKPVSRKPRRQLFSEVDVKLVFKEVSSKYLRRRIVEGEK 446 Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + +R I++Q G+L R HGS+LF RG+TQA+ VVTLG + Q +D+L T+ + Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506 Query: 373 -DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 F + Y F P + GEV R GAP+RREIGHG LA RA+ P+LP FPYT+R+ S ITE Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDFPYTIRVESTITE 566 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485 S+GSSSMA+VCG LAL DAGVPI PVAGIAMGLV D +F +ILSDI+G ED Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTHEFGGDGTPLILSDITGSEDA 626 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 G MDFKVAG + GI+A QMD+K+ GI+ +M AL QA+ GR HILNEM K Sbjct: 627 SGDMDFKVAGNEHGISAFQMDIKVVGITLPVMEQALLQARDGRNHILNEMLKCSPPPSKA 686 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIE 604 L P + +M + P+++ +IG GG+ I+ I+E+TG ++ DDGTVKI + + +E Sbjct: 687 LSPHAPVIHVMKVKPNKVNLIIGSGGRTIKSILEETGVYAIDARDDGTVKITARDMKSLE 746 Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 ++ +I ++T VP+V +I++ +K V +GAFV R+GL HIS+LS+ +AK D Sbjct: 747 KSKNIITNLTMVPKVGEIFRNCEIKTVAPYGAFVEIAPGREGLCHISELSSSWLAKAEDA 806 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD + VKL++ +D+G+++LS K + Sbjct: 807 YKVGDRIDVKLIEINDKGQLRLSCKAL 833 >gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena Capno] gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena Capno] Length = 744 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 281/685 (41%), Positives = 424/685 (61%), Gaps = 25/685 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ G ++LATVV + + DF PLTV+Y+E+ A G+ Sbjct: 15 GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ EIL R++DR +RPLF K Y ETQV+I ++ HD P ++ + Sbjct: 75 FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AASA L +S +PF+GP+ +V +NGQ+++NP ++ + S +D+ V ++D V MVE E Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEEEMS 245 +++SE + +AI F H KP IEA +LA+ K EP V + EE+ Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRSYEPEVEN--------EEVK 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + + C+ K KQ +K++ ++ F+ E I F D + Sbjct: 247 VKVYDFAYNKCYAIAKENTTKQERGEKFAAVKEECLALFTEEELEELTPIITRYFGDAEK 306 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 + VR ++L++ +R+DGR++ +R I +VG L HGSS+F RG+TQ++ VTLGT + Sbjct: 307 EAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREA 366 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D S F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ P Sbjct: 367 NVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--P 424 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+R+VSEI ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI Sbjct: 425 YTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDIL 484 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKV GT GITA QMD+KI G+S I+ AL QA+ GR+HIL +++ ++ Sbjct: 485 GDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIA 544 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIAS 597 + + P++ M +P + I IG GGK I+ + +T + +++ G V+I Sbjct: 545 QPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIVEILG 604 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A I+ A E + ++ P + Y +VV++++FGAFV F +D L+HIS++S +R+ Sbjct: 605 TDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRI 664 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK 682 K D +KEGD + VK L D + K Sbjct: 665 EKIEDALKEGDIIEVKYLGIDPKTK 689 >gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483] gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483] Length = 752 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 50 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 108 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 109 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 168 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 169 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 228 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 229 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 282 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 283 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 342 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 745 >gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum A2-162] Length = 697 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/696 (40%), Positives = 430/696 (61%), Gaps = 19/696 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA L YG+T VL+T + ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+ ++ VM D E +P + Sbjct: 67 AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ +S A +S +PF+GP QV I+G++++NP L + + S L L V+ T++ V+M Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGLIDGEFIINPSLAQKELSDLQLTVASTREKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H+ + +I I K+ C KE + S + EE+ + Sbjct: 187 IEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYAS---CAVPEELFEA 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E++ + F +K R + I ++ ++ F ++ W GE V + Q Sbjct: 244 IKKIVPSEEMEEAVFTDDKQTREENIREITARLQDAF-VDNEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V ++ R HGS++F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +F Sbjct: 360 QRIDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PY +R VSE ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV DD+I+L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+++ K R +IL E M Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++ R + ++ P++ + I P +I +V+G GK I I+E+TG +++I D+G V I Sbjct: 540 KCIAAPRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A++MI++I E +I++G VV + +FGAFV F ++G+VHIS++S R Sbjct: 600 GVDQHGMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 + + DV+ GD V V L D G++ S+K V + Sbjct: 660 INRVEDVLTLGDKVKVICLGKDKMGRMSFSIKDVPE 695 >gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23] gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23] Length = 752 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 50 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 108 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 109 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 168 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 169 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 228 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 229 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 282 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 283 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 342 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 745 >gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC BAA-286] Length = 720 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 294/708 (41%), Positives = 432/708 (61%), Gaps = 36/708 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + LETG++A+Q+DG+V+ G T++LATV + K DF PL V Y+E+ A G+ Sbjct: 13 GRTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQVEYKEKFAAFGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+LRRE R ++ EIL+ R++DR++RPLF Y E V + + D P ++ + Sbjct: 73 FPGGFLRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDGIDMPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++GQ++LNP + +Q +D+ V T D ++MVE E Sbjct: 133 AASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQADMDIMVGATIDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 ++SE +L+AI H +C+ IE + + K +E E + Sbjct: 193 FKEVSEAEMLEAIKVAHEAIKIQCQAQIELMEAVGKTVKRE----------YCHEVNDEE 242 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----------SEHSSWNEGEIVS-VFE 296 +++D+ C+ + Y + K + F+ +E +G ++S + Sbjct: 243 LRKDVWAKCY-DKAYAVAASANTNKHERGDNFAAIVDEYKAGLTEEELAEKGSLISRYYH 301 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + +R +LD+ R+DGR + +R I ++V L HGS++F RG+TQ++ VTLGT Sbjct: 302 DVEKEAMRRSILDEGKRLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGT 361 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ +D + + F++HYNF P +TG+ RREIGHG LA RA+ P++P Sbjct: 362 KLDEKIIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMIP-- 419 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFI 474 A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV GIAMGL+ K G +F Sbjct: 420 ANYPYVIRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVTGIAMGLISEKKGTNFA 479 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QA+ GRLHI+ + Sbjct: 480 VLSDILGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHIMGK 539 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDG 591 + + L E R E PR+E++ I + I VIG GGK+I+GI E+TGA V ID G Sbjct: 540 ILETLPEPRADFKENAPRIEVIIINKEFIGAVIGPGGKIIQGIQEETGATVTIEEIDGYG 599 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V+I+++S IEAA I+ I VPEV ++Y +V VM +GAF F +DGL+HIS+ Sbjct: 600 RVEISATSRTSIEAAVAKIKGIVAVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLHISE 659 Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697 +S +R+ +KEGD + VKL+D D + GK KLS KV+ +P Sbjct: 660 ISWDRIEDMEKAGLKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPPRP 707 >gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2] gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2] gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2] Length = 708 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E ++ K +E + Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +E++ + ++E + K+ R + ++++ + FS E I Sbjct: 239 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++++ ++E R L E PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++++ ++ I+ A MI++I VPEV ++YKG+V +M +GAF+ F +DGL+ Sbjct: 597 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 701 >gi|87303144|ref|ZP_01085942.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 5701] gi|87282311|gb|EAQ74271.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 5701] Length = 678 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/677 (42%), Positives = 409/677 (60%), Gaps = 16/677 (2%) Query: 31 VLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEIL 90 +L G+T VL T + ++G DF PLT +Y+ER YA G+IPG + RRE RP E IL Sbjct: 1 MLVECGDTAVLVTATRSKG-REGIDFLPLTCDYEERLYAAGRIPGSFFRREGRPPERAIL 59 Query: 91 ISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVV 150 +R+IDR +RPLF +++ QV+ + D P V+++ AS A +L+ +PF GP+ Sbjct: 60 TTRLIDRPLRPLFPSWLRDDLQVVATCLSLDERVPPDVLAVTGASIATLLAKIPFSGPMA 119 Query: 151 GAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209 +V + +VLNP E ++ LDL V+GT V+MVE ANQL E V++AI FG+ Sbjct: 120 AVRVGLLGDDFVLNPSYREIERSELDLVVAGTPTGVVMVEAGANQLPEQDVIEAIDFGYE 179 Query: 210 ECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVR 264 +I+A KL + EP V D + LE+E I E L+ F K R Sbjct: 180 AVGELIKAQQKLLADLGIEQVFPEPQVQDPALPAFLEQECGAGIGEVLK--QFSLTKAER 237 Query: 265 CKQID----DLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318 Q+D D+ +K+ + + + + ++ I K++R +L + R+DGR+ Sbjct: 238 DAQLDVIKADVAQKIAGLSDDDPIRVAAAGKALGNTYKGITKKLMRAQILSEGKRVDGRN 297 Query: 319 SETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377 + VR ISA VG+L +R HGS LF RG TQ + TLGT D Q +D L+ ++ H Sbjct: 298 LDEVRPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGEKTYLHH 357 Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437 YNF P + GE M +P RRE+GHG LA RAI PVLP FPY LR+VSE S+GS+S Sbjct: 358 YNFPPYSVGETRPMRSPGRREVGHGALAERAIVPVLPPKESFPYVLRVVSECLSSNGSTS 417 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 M +VCGS+LALMDAGVP+ PV+G AMGL+K+GD+ IL+DI G ED LG MDFKVAGT+ Sbjct: 418 MGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTE 477 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 GITA+QMDMKI G++ + + A+ QA+ RLHIL +M + + + R L PR+ Sbjct: 478 KGITALQMDMKISGLAVSTIAEAVNQARPARLHILEKMLEAIGKPRNVLSPHAPRLLSFR 537 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617 I P+ I VIG GG+ I+GI E+T K++I+D G V IAS A E A+ +I +T Sbjct: 538 IDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRRV 597 Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +++ G V +++ GAFV ++G++HISQLS RV K DV+K GD V V++ + Sbjct: 598 SEGEMFNGSVTRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVIKVGDAVTVRVREI 657 Query: 678 DDRGKIKLSMKVVDQNT 694 D+RG+I L+++ V Q T Sbjct: 658 DNRGRINLTLRGVAQET 674 >gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] Length = 669 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 277/660 (41%), Positives = 412/660 (62%), Gaps = 11/660 (1%) Query: 41 LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100 + T V LK+ QDF PL V Y+E+ A G+ PGGY R+E RPT+ EIL SRMIDR +R Sbjct: 1 MVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLR 60 Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160 PLF K Y ETQ++ ++ D ++ P V+++ ASAALM+S +PF GPV ++ I+G+ Sbjct: 61 PLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGR 120 Query: 161 YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219 +++NP E + S +DL G++ LM+E A + E+ + A+ F H + VI A Sbjct: 121 WIINPTHREREISDIDLVYVGSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQK 180 Query: 220 KLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277 +LA+ K V+ ++ + + ++++ L+ + + K R K++ LK+++ + Sbjct: 181 ELAEKVGKPKRSCVLFEENLA-ITNRLAELYSSQLQDALYTSSKTERQKKLAKLKEELTA 239 Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337 E + EI S ++ +Q + RT +L+ K R DGR E +R I+ + ++ R+HG Sbjct: 240 KILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHG 299 Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSR 396 SSLF RG+TQA+ + TL + + Q +D+ G Q F++HY F P + GEV R+ SR Sbjct: 300 SSLFCRGETQALCMATLASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSR 359 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA R++ PV+P FPY +R+ SEI ES+GS+SMATVCG SLALMDAGVP+ Sbjct: 360 REIGHGALAERSLLPVIPSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLK 419 Query: 457 KPVAGIAMGLVK------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 VAGI++GLVK D + +L+DI G EDH G MDFK+AGT GIT Q+D+K+ Sbjct: 420 TSVAGISVGLVKGKEEDFDWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKLR 479 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++M A+ Q+++ R+ IL+ M KV++ R ++ + PR+E + I PD+I +IG G Sbjct: 480 GIPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPG 539 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 GK I+ I ++GA++ I+DDGTV I SSS +EAAREMI + V IY+ +VV V Sbjct: 540 GKTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAREMIEDMVGEVTVGGIYRSKVVSV 599 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DFG F+ G +GLVHIS+LS V + VV+ G+ +WVK + D++G+ K S K Sbjct: 600 KDFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAA 659 >gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9902] gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902] Length = 721 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 296/703 (42%), Positives = 422/703 (60%), Gaps = 18/703 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T I + GR ++L TGR A Q+ G+VL G+T VL T + +DG DF PL +Y+E Sbjct: 5 TQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSKG-RDGIDFLPLICDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA G+IPG Y+RRE+RP E L R+IDR +RPLF +++ QV+ + D Sbjct: 64 RLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 V+++ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 124 SDVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTADG 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSK 239 V+MVE ANQL E V++AI FG+ + +I+A L K E D+ + Sbjct: 184 VVMVEAGANQLPEGDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPAY 243 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEI 291 LE++ ++ I L S F K R ++ +K ++ + S + + Sbjct: 244 LEKQCTKAISAVL--SKFEQSKEDRDNGLEAVKADAAEAIAALKEDDAVRQAVSSSSKLL 301 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIV 350 + F+ + K++R +L R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 302 GNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLS 361 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 TLGT D Q +D L ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 362 TATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAIL 421 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP+ FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+G Sbjct: 422 PVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEG 481 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+ +M A+ QA+ RLH Sbjct: 482 KDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVMAEAVNQARPARLH 541 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL +M + + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 542 ILEKMLEAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDS 601 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V IAS A E A+++I +T +++ G + +++ GAFV ++G++HIS Sbjct: 602 GIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEILPGKEGMIHIS 661 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 QLS RV K DVVK GD V V++ + D+RG+I L+++ V Q+ Sbjct: 662 QLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704 >gi|197294708|ref|YP_001799249.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma australiense] gi|226702674|sp|B1VAN5|PNP_PHYAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171854035|emb|CAM12008.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma australiense] Length = 710 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 287/697 (41%), Positives = 424/697 (60%), Gaps = 38/697 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 ++E G AR D +VL + +TVVL T V+ K+ DF PLTV YQE+ YA GKIPG Sbjct: 15 FQVEIGTYARNVDPSVLIRFQDTVVLTTTVFSNK-KNNFDFLPLTVIYQEKFYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 +LRRE R T++EIL SR+IDRS+RPLF K ++ E QVI V+ + + + S++ +S Sbjct: 74 SFLRREGRSTDHEILSSRLIDRSLRPLFPKEFRQEIQVINTVLSSNPDFKSEIASILGSS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 +L++S +PF PV G V YI Q+V+NP + S L L V+GT+ V+M+E A++ Sbjct: 134 LSLLISEIPFFEPVAGVYVAYIQNQFVINPNAQQLTNSPLHLLVAGTKKNVVMIEAHASE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDLR 253 +SE++ L+AI+F H K + + K + +ID + LE+E ++ E R Sbjct: 194 VSEEMFLEAIVFAHEYIKKLCLFQEDVQKKVGQTKKLIDLDAELQSLEKEFNEQYHEQTR 253 Query: 254 VSCFIPEKYVRCKQIDDL---KKKM---------------VSYFSSEHSSWNEGEIVSVF 295 + Q +DL KKK+ +++F E I ++F Sbjct: 254 T---LVANVFEQDQKNDLQVFKKKILAKAQQKAFVKTIDQITFFDVEEQKNYLLLIENLF 310 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + + +R ++ K R D R E VR++ +Q+ LL R HGS+LF RG TQ++ VVTLG Sbjct: 311 QKLFNQEMRNYIIKNKKRPDKRTLEEVRNLDSQIDLLPRPHGSALFTRGQTQSLAVVTLG 370 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T + + +D LSG FM+HYNF P A G + R APSRREIGHG LA +AI P+LP+ Sbjct: 371 TLSESKIIDDLSGESNKRFMLHYNFPPFAVGSIGRYAAPSRREIGHGNLAEKAILPLLPE 430 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDF 473 FPY +R+VSEI ES+GSSS ATVC +S++LM AGVP+ + V+GIAMGL D +++ Sbjct: 431 ENDFPYAIRVVSEILESNGSSSQATVCATSMSLMAAGVPLKRAVSGIAMGLFMDSKTNEY 490 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +ILSDI G EDH+G MD K+AG+D GITA+QMD+KI GIS+ I+ A QAK+GRLHIL Sbjct: 491 VILSDIQGLEDHIGDMDLKIAGSDKGITALQMDLKIEGISQAILKQAFFQAKKGRLHILE 550 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGT 592 M+K ++ R ++ ++ P+V++ I P++IR+VIG GK+I I+E G K++I+ DG Sbjct: 551 HMNKTIASPRKEMSQYAPKVQMFQIKPEKIRDVIGSAGKIINQIIENHDGVKIDIEQDGR 610 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGL 646 + + S+L ++ A I+++ EVN IY + + ++ GAF + +GL Sbjct: 611 IFVMHSNLETVKQAILFIKNLIQDAEVNSIYHAHISRFLNDKAGNILGAFAQVSPSIEGL 670 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 + S + K +DVVK GD V VK + ++RG+I Sbjct: 671 IRFS-----KAKKENDVVKIGDKVLVKCVKINERGRI 702 >gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] Length = 737 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/701 (40%), Positives = 439/701 (62%), Gaps = 21/701 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M D E E+ GR + +E G++A+QS GA + ++ +LATV F PLT Sbjct: 1 MNDYRVWEREFFGRKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V +QE+ YA GKIPGG+++RE +P+EN IL +R+IDR IRPLF K NE QVI+ V+ Sbjct: 61 VEFQEKFYAAGKIPGGFVKREGKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSA 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D ++ P + + A+S AL +S +PF+G V G +V Y++G+Y+ P +E ++ LD+ V+ Sbjct: 121 DPDNPPDTIGIFASSLALNISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSELDIVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA--------KMCAKEPIV 231 GT++AV MVE EA ++SE+V+L A++ H K ++E ++ ++ EP Sbjct: 181 GTKEAVTMVEGEAKEVSEEVMLKALMKAHEAIKQLVEFQEEIVSEFEVQKWELEVPEPPE 240 Query: 232 IDSKDFSKL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 + F L +E + +M+ + ++Y R I+++K+K +S + NE Sbjct: 241 GFIEAFESLLDDQEIIERMLTPGKKNKGRALKEY-RNAIIEEMKEKFTDKWSEDEFVENE 299 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 + +E+ ++R ++++ +RMDGR + +R I+ ++ +L RTHGS+LF RG+TQ+ Sbjct: 300 HFLKEHYEEKVKHLMRRSIVERNLRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQS 359 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLG DEQ +D+L FM+HYNF P +TGEV RM P RREIGHG LA RA Sbjct: 360 LATVTLGAPIDEQIIDTLLEEGSKTFMLHYNFPPFSTGEVKRMRGPGRREIGHGHLAERA 419 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + ++P +FPYT+R+VSEI ES+GSSSMATVC SLALM AGVPI + VAG+AMGL++ Sbjct: 420 LKNMIPPEEEFPYTIRVVSEILESNGSSSMATVCSGSLALMAAGVPIKRHVAGVAMGLIQ 479 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + D+ +IL+DI G+EDH G MDFKVAGT GITA QMD+K+ G+SE IM+ AL QAK R Sbjct: 480 EPDETVILTDILGNEDHYGDMDFKVAGTRDGITAFQMDVKVAGVSEEIMLKALYQAKEAR 539 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 + IL+ M + +SE R ++ + P +++MA+P ++I +IG GGKV++ + A++ ID Sbjct: 540 MKILDLMYETISEPRKEISPYAPVIKVMAVPYEKIGEIIGPGGKVVKKLSTDYDARIFID 599 Query: 589 D-DGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 D VKI + ++E +I + I+DV E +++ G + ++ +G FV + GL Sbjct: 600 DVKCQVKIIGNDPEKVEKLMGVINAVISDVKE-GQVFDGVISRIEPYGIFVEIAPGKTGL 658 Query: 647 VHISQLS--TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +H S+ + KT++V G + V++ D+ G+I+L Sbjct: 659 LHSSKFGGDMKEFIKTNNV---GAHLKVEVTAIDNLGRIQL 696 >gi|167758075|ref|ZP_02430202.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704] gi|167663972|gb|EDS08102.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704] Length = 695 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 280/694 (40%), Positives = 421/694 (60%), Gaps = 17/694 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T ++G DFFPL+V Y ER Sbjct: 6 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 66 YSVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++ ++V NP + + S L L V+ T++ V+ Sbjct: 126 LTAMLGAAIATTISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASDLALTVASTKEKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ E ++DAI H + VI I + C K +S + EE+ Sbjct: 186 MIEAGANEVPEQKMIDAIFAAHELNQKVIAFIETIVAECGKPKHAYES---CAVPEELFA 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300 I E ++ + F +K R + I + K+ F+ + N GE V + Q Sbjct: 243 AITEIVPPSEMEEAVFTDDKQTREENIRVITAKLEEAFADKEEWLNVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L + R DGR + +R ++A++ L+ R HGS++F RG TQ + TL + Sbjct: 300 KTVRKMILKDQKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLAEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP A+F Sbjct: 360 QRLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEAEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477 PY +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+++L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDSDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +IL+E MS Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMS 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++E R ++G++ P++ M I P +I +V+G GK I I++QTG K++I DDG V I Sbjct: 540 KTIAEPRPEVGQYAPKIIQMQIDPQKIGDVVGQRGKTINAIIDQTGVKIDITDDGAVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + +E A+ +++ I E ++ +G+VV + +FGAF+ F ++G+VHIS++S ER Sbjct: 600 GTDANSMEEAKRLVQIIVTDFEAGQVLEGKVVSIKEFGAFLEFAPGKEGMVHISKISKER 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + DV+ GD V V L D G++ SMK V Sbjct: 660 INHVEDVLTLGDVVKVVCLGKDKMGRLSFSMKDV 693 >gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9312] gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312] Length = 721 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 286/702 (40%), Positives = 430/702 (61%), Gaps = 18/702 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L TG A Q++G+V+ G+T +L T + K+ DF PL +Y+E+ Y Sbjct: 8 ITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVADFLPLICDYEEKLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG++RRE RP E LISR+IDR +RPLF ++E Q++ + + D V Sbjct: 67 AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +L +PF GP+ +V I ++LNP E ++G LD+ V+G+ D ++M Sbjct: 127 LAVTGASIATLLGEIPFHGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEE 242 +E ANQLSE ++AI FG+ +I++ L K + + D+ S LE+ Sbjct: 187 IEAGANQLSEQDTIEAIDFGYESVTELIKSQVDLLKDLGIKQVKSSAPEEDNTLPSYLEK 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGEIVSV 294 ++ I +L + F K R +++ +K + S S N+ + S Sbjct: 247 NCTKGI--ELVLKKFDQSKDERDLELEKIKVDTQAKIESLKDDNELKVLLSENDKLLSSD 304 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353 F+ + K++R+ +++ R+DGR+ + VR ISA G+L +R HGS+LF RG TQ + T Sbjct: 305 FKKLTKKLMRSQIINDGKRVDGRELDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTT 364 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 LGT D Q +D L+ + ++ HYNF P + GE M P RREIGHG LA RAI PVL Sbjct: 365 LGTPSDAQEMDDLNPSTEKTYLHHYNFPPFSVGETRPMRTPGRREIGHGALAERAIIPVL 424 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P FPY LR+VSE+ S+GS+SM +VCGS+L+L+DAGVP+ V+G AMGL+K+G + Sbjct: 425 PGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKALVSGTAMGLIKEGKEI 484 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+S +++ A+++A+ RLHIL Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLSVSVISDAIKKARPARLHILE 544 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 +M + + + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+D G V Sbjct: 545 KMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIV 604 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 IAS A E A+++I +T +I+ G V +++ GAFV ++G+VHISQLS Sbjct: 605 TIASHDGAAAEEAQKIIEGLTRKVHEGEIFTGVVTRIIPIGAFVEILPGKEGMVHISQLS 664 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 RV + DVV++GD V V++ + D RG+I L+++ V QN+G Sbjct: 665 EARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVSQNSG 706 >gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] Length = 721 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 297/703 (42%), Positives = 425/703 (60%), Gaps = 18/703 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+VL G+T VL T +DG DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-RDGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG Y+RRESRP E L +R+IDR +RPLF +++ QV+ + D Sbjct: 63 ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE ANQL E V++AI FG+ +I+A +L K E DS + Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEQPDEDSTVPA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290 LE++ ++ I L S F K R ++ +K ++ ++ +H+ + + Sbjct: 243 YLEKQCTKAISAVL--SKFDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R +L R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP+ FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVP+ PV+G AMGL+K+ Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S + A+ QA+ RL Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703 >gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 722 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/711 (40%), Positives = 430/711 (60%), Gaps = 32/711 (4%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T + + GR ++L TGR A Q+ G+VL G+T VL T + ++G DF PL+ +Y+ Sbjct: 4 QTTSVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQG-REGADFLPLSCDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ QV+ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 ++++ +S A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADILAVTGSSMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLE 241 V+MVE +NQL+E V++AI FG+ EA+++L K A+E I+ DS + Sbjct: 183 GVVMVEAGSNQLTEQDVIEAIDFGY-------EAVNELIK--AQESILKDSGLTQIKPEK 233 Query: 242 EEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSS-------EHS 284 ++ + + L +C P K R ++D++K S + S Sbjct: 234 PDLDETVPSYLEKNCTKPISALLKEFDLSKEDRDLKLDEIKTNCAEKIDSLKDDNAVKKS 293 Query: 285 SWNEGEIVSV-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFI 342 +++ + F+ + K++R ++ R+DGR + VR+ISA+ G+L +R HGS LF Sbjct: 294 ITTNTKLLGISFKALTKKLMREQIIKDGKRVDGRALDEVREISAEAGILPKRVHGSGLFQ 353 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG TQ + TLGT D Q +D L+ + ++ HYNF P + GE M P RRE+GHG Sbjct: 354 RGLTQVLSTATLGTPSDAQEMDDLNPSPDKTYIHHYNFPPYSVGETRPMRTPGRREVGHG 413 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RAI PVLP FPY LR+VSE+ S+GS+SM +VCGS++AL+DAGVP+ PV+G Sbjct: 414 ALAERAIIPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGA 473 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGL+K+G++ IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+ I+ A+ Sbjct: 474 AMGLIKEGEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLPIKIIGEAIN 533 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QAK R HIL +M + + + R L PR+ I P+ I VIG GG+ I+GI E+T Sbjct: 534 QAKPARTHILEKMVQAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTN 593 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 K++I+D G V IAS E A+++I +T +++ G + +++ GAFV Sbjct: 594 TKIDIEDGGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEVFTGSITRIIPIGAFVEILPG 653 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ++G++HISQLS RV K DVVK GD V V++ + D+RG+I L+++ + QN Sbjct: 654 KEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGIPQN 704 >gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM 4252] gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM 4252] Length = 772 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 293/708 (41%), Positives = 437/708 (61%), Gaps = 33/708 (4%) Query: 8 EIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 EIE+A G+ L+LETGR+A+Q++GAV+ G+T+VL T V ++GQ FFPLTV Y+E+ Sbjct: 9 EIEFAPGKSLRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREK 68 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IPGG+++RE RPT+ EIL SR+IDR+IRPLF + +E Q+I V+ D Sbjct: 69 FAAGGRIPGGFIKREGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVISADDRYDA 128 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V++ ASAAL+L+G PF+GP+ +V ++GQ+V+NP L E +Q ++L V+G +DA+ Sbjct: 129 DVLAGTGASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDINLVVAGKEDAI 188 Query: 186 LMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 +MVE E ++SE+ +L+A+ H C+ +E ++ + EP + + L Sbjct: 189 VMVEGEMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAHGR---PEPFPYQT---TTLP 242 Query: 242 EEMSQMIKE----DLRVSCFIP-EKYVRCKQIDDLKKKMVSYF-------------SSEH 283 EE+ ++E L P +K + ++ + ++ V+ + Sbjct: 243 EELVARVRELAVPKLEAHLRAPYDKQTFYEGLEQIGEETVAALLGTTDAEGNQVLAEATP 302 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 W +I + +V+R ++L + R+DGR + +R I +VG L R HGS++F R Sbjct: 303 EGWTADQIRKAVSQVTREVMRQMILREGRRIDGRSLDEIRPIWMEVGYLPRVHGSAIFTR 362 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + VTLGT +D Q +D + F +HY F P TGE+ + P RREIGHG Sbjct: 363 GETQVLASVTLGTSKDVQMIDQIFVQGDKRFFLHYEFPPFCTGEIRFLRGPGRREIGHGY 422 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ +LP + FPYT+R+ +++ ES+GSSSMA+VC SLALMDAGVP+ K VAG+A Sbjct: 423 LAERALAAMLPDESSFPYTIRVNADVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVA 482 Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 MGL+K+GD IL+DI G EDHLG MDFKVAGT GITA QMD+KIGG++ IM AL+Q Sbjct: 483 MGLIKEGDQVAILTDILGTEDHLGDMDFKVAGTRDGITACQMDIKIGGLTREIMQRALEQ 542 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+R R++IL+ M + + R +L + PR+ + I P+ I VIG GG+V++GI +T Sbjct: 543 ARRARMYILDLMEQTIEAPRPELSPYAPRLTQITIDPEFIGAVIGPGGRVVQGIQRETNT 602 Query: 584 KVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640 + I++ G V +A+++ + A EMI+ I VPEV Y+G V + FGA V Sbjct: 603 TIEIEERDGVGVVTVAATNQENAQRAIEMIKQIVAVPEVGAEYEGIVRSIQSFGAIVEIM 662 Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++GL+HIS+L V D +K GD V VKL++ + GK++LS K Sbjct: 663 PGKEGLLHISELDHGYVRDIHDYLKVGDKVRVKLIEIREDGKLRLSRK 710 >gi|158313041|ref|YP_001505549.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. EAN1pec] gi|226702654|sp|A8L6G1|PNP_FRASN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158108446|gb|ABW10643.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia sp. EAN1pec] Length = 729 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 287/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+ARQ+ GAV+A G+T+VL+ RS K+ DFFPLTV+ +ER YA G+I Sbjct: 19 RTVRFETGRLARQAAGAVVAHLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ V+ D ++ VV++ A Sbjct: 79 PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ ML+GLPF GP+ +V Y++G ++ P E ++ + D+ V+G + A++ Sbjct: 139 ASASTMLAGLPFSGPIGATRVGYVDGDWIAFPTHSELERATFDMVVAGRVLEDGSDVAIM 198 Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE----PI 230 MVE EA + +V + + G KP I A S+LA AK P+ Sbjct: 199 MVEAEATPGTVALVAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAAKPQREFPL 258 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 ID D + E ++ + E+L + I K R +++ ++ V S + ++ E Sbjct: 259 FIDYHD--DVLETLTAAVGEELAAALRIAGKAERETELERVRALAVEKVSGQFEGRDK-E 315 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I + + K+VR+ ++ VR+DGR + +R++SA+V + R HGS+LF RG+TQ + Sbjct: 316 ISPAYRALTKKLVRSRIVTDGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILG 375 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 376 VTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+++G Sbjct: 436 PVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIREG 495 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA+ RL Sbjct: 496 DAFVTLTDILGAEDAYGDMDFKVAGTQEFVTALQLDTKLDGIPASVLAGALQQARAARLT 555 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M++ + ++ PRV + IP D+I VIG GK+I I +GA++ ++DD Sbjct: 556 ILEVMAEAIGGPD-EMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614 Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 GT+ I ++ E AR I +I + +PEV + Y G +VK+ +FGAFV +DGL+H Sbjct: 615 GTIYIGAADGPAAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674 Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +S+L +RV K DV+ G + V++ + D RGKI L+ Sbjct: 675 VSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISLA 716 >gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9605] gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605] Length = 721 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 297/703 (42%), Positives = 425/703 (60%), Gaps = 18/703 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+VL G+T VL T ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG Y+RRESRP E L +R+IDR +RPLF +++ QV+ + D Sbjct: 63 ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE ANQL E V++AI FG+ +I+A +L K E DS + Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEKPDEDSTVPA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290 LE++ S+ I L S F K R ++ +K ++ ++ +H+ + + Sbjct: 243 YLEKQCSKAISAVL--SKFDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + K++R +L R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP+ FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVP+ PV+G AMGL+K+ Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S + A+ QA+ RL Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703 >gi|291550238|emb|CBL26500.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques L2-14] Length = 695 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 427/694 (61%), Gaps = 17/694 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T ++G DFFPL+V Y ER Sbjct: 6 EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVEYNERM 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YAVGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + V+ D + SP Sbjct: 66 YAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++G++V NP + + S L L V+ T++ V+ Sbjct: 126 LTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKEKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E A ++ E +++AI H+ + VI + C K + + F+ + +E+ Sbjct: 186 MIEAGAKEVPEAKMIEAIFAAHDLNQKVIAFFDTIVAECGKPK--HEYQSFA-VPQELFD 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQA 300 I+E ++ + F +K R + I + +++ F+ +E GE V + Q Sbjct: 243 AIQEIVPAAEMEEAVFTDDKQTREENIRVITERLEEAFADNEEYLAKLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR + +R ++A+V L+ R HGS++F RG TQ + TL + Sbjct: 300 KTVRKMILKDHKRPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICTMTTLAPLSEA 359 Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L ++ +M HYNF + GE P RREIGHG LA RA+ PVLP ++F Sbjct: 360 QKLDGLDEAEKTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+S A+VC SS++LM AGVPI VAGI+ GLV + DD+++L+ Sbjct: 420 PYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYLVLT 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R +I++E MS Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMS 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K ++E R ++GEF P++ M I P +I +V+G GK I I+++TG K++IDD+G V I Sbjct: 540 KAIAEPRKEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIDETGVKIDIDDEGNVSIC 599 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 + +E A + I++I E ++++G+V+ + +FGAFV F ++G+VHIS+LS +R Sbjct: 600 GTEKENMEKAAKYIQTIVTDYEAGQLFEGKVISIKEFGAFVEFAPGKEGMVHISKLSKQR 659 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V K DVV GD V V L D G+ SMK V Sbjct: 660 VDKVEDVVSIGDVVKVVCLGKDKMGRFSFSMKDV 693 >gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 710 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 284/699 (40%), Positives = 431/699 (61%), Gaps = 33/699 (4%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +ETG+IARQ+DGA + T++LATVV + +K+ +F PLTV+Y+E+ A GKIP Sbjct: 16 PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+++RE RP++ EIL R++DR +RP FS+ ++NE Q++I+++ +D P ++ +AA Sbjct: 76 GGFIKREGRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMISLLSYDKTVLPDELAGLAA 135 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193 S AL ++G+PF GP+ ++ +NG++++NP LD+ ++ +DL V ++ +++M+E E Sbjct: 136 STALSVAGIPFNGPISEIRIIRVNGKFIINPSLDQLEKADIDLIVGASEHSIIMIEGEMK 195 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253 +++E L AI HN KP IEA KL K K DF + E + KE L Sbjct: 196 EITEKEFLKAINIAHNAIKPQIEAQKKLVKKIQKNRFF----DFKENNRENPSLEKEFLE 251 Query: 254 VSCF-------------IPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 F + +K R Q +++ KKK+ S E NE I +E Sbjct: 252 KELFSFSYEKIYGMYKDLLDKKTRSIQEKTILNNFKKKL----SIEEREKNEIFIDQYYE 307 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+ +VVR ++L++ +R+DGR S+ +R I + V L HGS+LF RG+TQ++ VTLG+ Sbjct: 308 EIKKRVVRHMILEEGIRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGS 367 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D +D++ + F +HYNF P +TGE+ + SRREIGHG LA+RA+ V+P Sbjct: 368 SLDANKIDNVIMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNVIPDN 427 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 PYT+R+VS+I ES+GSSSMATVC +SLALMDAG+ I PV+GI+MGL D + +IL Sbjct: 428 N--PYTIRVVSDILESNGSSSMATVCAASLALMDAGIAIENPVSGISMGLFTDKEKKVIL 485 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRGRLHILNEM 535 SDI G+ED G +DFK+ GT +GITA QMD+ KI G++ +++ L QA GRL IL +M Sbjct: 486 SDIMGEEDGFGELDFKITGTKNGITACQMDVKKIQGLTNDLLSQILMQALEGRLFILKKM 545 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGT 592 + L + R + P++ IP D I VIG GGKVI+ I T + I+ D G Sbjct: 546 LETLPKYRNKQKPNAPKIYTFNIPKDFIGAVIGPGGKVIQEIQSCTDTSILIEEKGDMGA 605 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 ++I +++ A I+ IT VPE+ KIYK +V + DFGAFV +GL+HIS++ Sbjct: 606 IEIIGKDYQKMKQAINRIKEITFVPEIGKIYKAKVKSIKDFGAFVEISKGVEGLLHISEI 665 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +R+ + + GD + VK + D++ K+KLS KV+ Sbjct: 666 GWKRLNNIEEELNIGDIIEVKFMGIDEKNKKMKLSRKVL 704 >gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9313] gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 723 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 293/706 (41%), Positives = 421/706 (59%), Gaps = 20/706 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LI+R+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+ +PF+GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVID--SKD 236 V+MVE ANQL + V++AI FG+ +I+A + K EP D +K Sbjct: 183 GVVMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQVQPEPPTQDQDTKL 242 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNE 288 + LE+ S+ I E L+ F K R ++D +K K S + + N Sbjct: 243 STYLEKNCSKSIGEVLK--QFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANS 300 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQ 347 + + F+ + K++R ++ + R+DGR + VR IS+ G+L +R HGS LF RG TQ Sbjct: 301 KVLSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQ 360 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + TLGT D Q +D L+ ++ HYNF P + GE M +P RRE+GHG LA R Sbjct: 361 VLSTATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAER 420 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP FPY LR+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+ Sbjct: 421 AIIPVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLI 480 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K+ + IL+DI G ED LG MDFKVAGT GITA+QMDMKI G+ + A+ QA+ Sbjct: 481 KEDAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPA 540 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R+HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I Sbjct: 541 RIHILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDI 600 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +D G V IAS A EAA+ +I +T +++ G + +++ GAFV ++G++ Sbjct: 601 EDGGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGMI 660 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 HISQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 661 HISQLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQN 706 >gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 946 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 300/759 (39%), Positives = 445/759 (58%), Gaps = 72/759 (9%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I R + +ETG I RQ+ G+V T GET+V +V + DFFPL+VNYQE Sbjct: 79 SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+LI R+IDR +RP K + +ETQ++ V+ +D S Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++ AA A+ LS LP V G +V + ++++NP E + S LDL V+GT A Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS------KDFS 238 +LM+E N L E+ +L A+ G + + + + LAK K P ++D+ + + Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGK-PKMLDAIKLPPPELYR 317 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------------- 282 +EE Q + + L++ IP R K + L++++++ + E Sbjct: 318 HVEEIAGQQLGKVLQIRNKIP----RRKALISLEEEVLTILTEEGYVSKDETLGTAETIQ 373 Query: 283 ------------------------------HSS---WNEGEIVSVFEDIQAKVVRTVMLD 309 SS ++E ++ VF+++ +K +R +++ Sbjct: 374 DLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVE 433 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 R DGR + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+ Q +D+L Sbjct: 434 GGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDV 493 Query: 370 -QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + F + Y+F P GEV RMGAPSRREIGHG LA RA+ P+LP FPYT+R+ S Sbjct: 494 DELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVEST 553 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGD 482 ITES+GSSSMA+VCG LAL DAGVP+ +AGIAMG+V + ++F +ILSDI+G Sbjct: 554 ITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGS 613 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED G MDFKVAGT+ GITA QMD+K+GGI+ IM AL QAK GR IL EMSK Sbjct: 614 EDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLP 673 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLA 601 +L ++ P + IM + P++I +IG GGK ++ I+E+TG + ++ DDG VKI + L Sbjct: 674 AKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLT 733 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E ++ +I S+T VP V IY+ +K + +G FV R+GL HIS+LS +AKT Sbjct: 734 SLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKT 793 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 D K GD + VKL++ +D+G+++LS K + + N KP Sbjct: 794 EDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832 >gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135] gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135] Length = 727 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/709 (41%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DGAV+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELN-DGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 REKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP + ++ +D+ V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E ++SE +L+A+ F H CK +E + ++ K +E Sbjct: 185 ENIMMVEGEMKEVSEQDLLEAMKFAHEAIKVHCKAQMELMEEVGKTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ + +C+ K+ R D + ++ + FS E Sbjct: 235 YCHEENDEDLRKAVHDACYEKAYAVAKSGNKNKHERGDAFDAICEEFKAQFSEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I + L HGSS+F RG+TQ+ Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKMDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGVPI KPV+GIAMGL+K Sbjct: 415 LKGQIP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT GITA QMD+K G++ +I+ AL QAK+ Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALMQAKQ 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R +L PR+E + IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILGKLTECIAEPRAELKPHAPRIETLTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I D G ++IA ++ I+ A MI++I VPEV ++Y G+V +M +GAFV F + Sbjct: 593 IEEVDGAGRIEIAGTNKKCIDDAMRMIKAIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRFETIEETGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701 >gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp. Y04AAS1] gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp. Y04AAS1] Length = 703 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 280/678 (41%), Positives = 433/678 (63%), Gaps = 20/678 (2%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +E + A Q+D ++L + G T VL TV G DF PL+V+Y+ER++A GKIP Sbjct: 12 PIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEPLCGIDFAPLSVDYRERSFAWGKIP 71 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+++RE +PT+ E+LISR+IDR +RPL K + NE V + D + P V+++ A Sbjct: 72 GGFIKREGKPTDREVLISRVIDRPLRPLMPKGFLNEVVVTCLTLSADDKYDPDVLAITGA 131 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN 193 SAAL+ S +PFEGP+ G +V +NG++++NP ++ + S +D+ ++ ++DA++MVE A Sbjct: 132 SAALVSSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNSDMDIVMALSKDAIVMVEGGAK 191 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPI--VIDSKDFS-KLEEEMSQMI 248 ++ E V+LDA+ FG + + +I+A +L K+PI + S D + KL+E S I Sbjct: 192 EVEESVLLDALFFGLEKGQTLIKAQEELVDSLKPEKKPIGHIGLSDDMANKLKEIASSKI 251 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 E + +K R K + D+ + + S E + + F+D++++++R +L Sbjct: 252 LEAFSIE----DKKERSKALKDVYAQAMQKLGI--SKEQEFDFLVSFKDLESQLMREQIL 305 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-S 367 K R+DGR +R I+ ++ L+R HGS++F RG TQA+ VTL +++ Q V+++ Sbjct: 306 KYKKRIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFE 365 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 G FM+HYNF P +TGE G P RREIGHG LA RA+ P+L + FPY +R+VS Sbjct: 366 GETFKRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLAKEEDFPYIIRVVS 425 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 +I ES+GSSSMATVC SLAL DAGVP+ K VAGIAMGL+KDGD+F+IL+DI GDEDHLG Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPMKKHVAGIAMGLIKDGDNFVILTDILGDEDHLG 485 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAGT G+T++QMD+KI G+S++IM+ AL QAK R+ IL+++ + + E ++ Sbjct: 486 DMDFKVAGTRDGVTSVQMDIKIKGLSKDIMIKALNQAKEARMFILDKLYEAIPEPNKEVS 545 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 ++ P+ ++M IP D++ VIG GK I+ I EQ GA V I D I + ++ + A Sbjct: 546 KYAPKAQVMKIPEDKVGLVIGPAGKNIKYIKEQFGASVWI-DGANAYINAPTIEAVNKAA 604 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + I S+ EV +Y+G+V++V ++G FV + GL+H S + TE+ + G Sbjct: 605 DFINSLIQEVEVGGVYEGKVIRVENYGLFVEVLPGKVGLLHASAM-TEK-----PTINVG 658 Query: 668 DTVWVKLLDFDDRGKIKL 685 DT+ VK++ D++ ++ L Sbjct: 659 DTIKVKVMAIDEQNRLNL 676 >gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita akajimensis DSM 45221] gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita akajimensis DSM 45221] Length = 724 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 288/701 (41%), Positives = 428/701 (61%), Gaps = 20/701 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V ++ G +++ TG +A + GAV GET + + +L+ GQDFFPLTV+Y+ Sbjct: 5 HNVTVDGLG--IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYR 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ A GK PGGY +RE +P+E EIL SR+ DR +RPLF K + NE QVI ++ D Sbjct: 63 EKFSAGGKFPGGYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTH 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P V+ + AASAA ++S +P+ GPV +V I+G++V NP DE S LDL G++ Sbjct: 123 EPDVLMVNAASAATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYVGSET 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSK 239 ++M+E A +S++ +A+ +G +P+I A +LAK+ KE P+V+ D ++ Sbjct: 183 EMMMIEGSAEFISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVLTPADVTE 242 Query: 240 L-EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E ++ +KE L + K D + +++ N ++ F++I Sbjct: 243 FCEAHAAEKVKEALGHDSYTERKLAIEAIAKDTTAALEEKLGADNVDGN--DVARAFDEI 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q K+ R +L+ R+DGR ++ +R IS G+L R HGS++F RG+TQA+V+ TLGT Sbjct: 301 QEKLYRQNILETGRRVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSR 360 Query: 359 DEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L+ G F++HYNF P +TGE R G RREIGHG LA R++ P+LP Sbjct: 361 DVQDIDGLTGGATSKSFILHYNFPPFSTGEAGRFGFTGRREIGHGALAERSLLPILPPED 420 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD---- 471 +FPY +R+VSE+ S+GS+SMA++CG L+LMDAGVPI+ P AGI+ GLV KD D Sbjct: 421 EFPYAIRVVSEVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKDADGKIT 480 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 +IL+DI G EDH G MDFK+AGT GIT Q+D+KI G+ +I + A++Q + R+ I Sbjct: 481 KHVILTDILGAEDHFGDMDFKIAGTPEGITGFQLDLKIQGLPFDITLEAIKQNRDARMKI 540 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590 + M++ L ESR L E PR+ + I P++I +IG GGK IR I E +GA+++ID+D Sbjct: 541 IAIMAEHLPESRQDLREHAPRIHTIKIDPEKIGALIGPGGKNIRRITEVSGAQIDIDEDN 600 Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V + ++ ++ A + + T EV K Y+G V + DFGAFV ++GLVHI Sbjct: 601 SGRVLVFATDKESMDRAIQEVELCTAEIEVGKTYRGIVRGIKDFGAFVECLPGKEGLVHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+L+ RV KT D+ K GD + VK + ++GK++LS K Sbjct: 661 SELADFRVNKTEDICKLGDEMVVKCIGM-EKGKVRLSRKAA 700 >gi|67921975|ref|ZP_00515491.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH 8501] gi|67856191|gb|EAM51434.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH 8501] Length = 715 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 296/695 (42%), Positives = 439/695 (63%), Gaps = 20/695 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ GAVL +T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKLGLLAPQAGGAVLIQSQDTAVLVTATTTKG-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG+LRRE RP E ILISR+IDR +RPLF ++ + Q+I + D E P V Sbjct: 67 AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRKDIQIIATTLSMDEEVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ +S A++ +G+PF GP+ +V I +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGSSIAVIQAGIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGVVM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAK-EPIVIDSKDFSKLEE 242 VE AN L E +++AI FG+ + +I A + +L K EP + +E+ Sbjct: 187 VEAGANTLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMEIGKAEPPSTNEVLEKFIEK 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS--------- 293 + + IK+ L + K R +D++K+ + SE S + ++ + Sbjct: 247 QAADSIKKVL--VQYDLSKADRDTALDNIKETAIEEAISELSEEDPIKVATTEDPKAVGN 304 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352 +++ + K++R+ ++ + +R+DGR + VR I+ +VGL+ R HGS+LF RG TQ + Sbjct: 305 LYKGLTKKLMRSQIISEGIRVDGRKLDEVRPIACRVGLMPPRVHGSALFTRGLTQVFSLA 364 Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q + D L ++ HYNF P + GE + +P RREIGHG LA RAI P Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSMGETKPLRSPGRREIGHGALAERAILP 424 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++G Sbjct: 425 VLPPQEEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGK 484 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++ +I+ A+QQA RLHI Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLTMDIVAKAIQQALPARLHI 544 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M +++ R L F PR+ M I P+QI VIG GGK I+ I EQTG+K++I DDG Sbjct: 545 LDKMLATIAQPRRDLSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ + E AR++I ++T + ++Y G+V +++ GAFV ++G++HISQ Sbjct: 605 TVTIAAIQARKAEKARDLIFNMTRKLKEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 L+ RV K + V GD V VK+ + D++G++ L+ Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699 >gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107] gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107] Length = 721 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 302/714 (42%), Positives = 423/714 (59%), Gaps = 40/714 (5%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T I + GR ++L TGR A Q+ G+VL G+T VL T S +DG DF PL +Y+E Sbjct: 5 TQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-SGRDGIDFLPLICDYEE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R YA G+IPG Y+RRE+RP E L R+IDR +RPLF +++ QV+ + D Sbjct: 64 RLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 V+++ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 124 ADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTADG 183 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEA------------------------ISK 220 V+MVE ANQL E V++AI FG+ + +I+A + Sbjct: 184 VVMVEAGANQLPEQDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPAY 243 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 L K C K + SK F + +EE + E ++VS E K+ DD ++ VS S Sbjct: 244 LEKQCTKAISAVLSK-FEQSKEERDNGL-EAVKVSAA--EAIAALKE-DDAVRQAVS--S 296 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSS 339 S N F+ + K++R +L R+DGR + VR ISA G+L +R HGS Sbjct: 297 SSKLLGNS------FKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSG 350 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG TQ + TLGT D Q +D L ++ HYNF P + GE M +P RREI Sbjct: 351 LFQRGLTQVLSTATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREI 410 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RAI PVLP+ FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVP+ PV Sbjct: 411 GHGALAERAILPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPV 470 Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 +G AMGL+K+G D IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+ ++ Sbjct: 471 SGAAMGLIKEGKDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVVAD 530 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 A+ QA+ RLHIL +M + + R L PR+ I P+ I VIG GG+ I+GI E Sbjct: 531 AVNQARPARLHILEKMLEAIDTPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITE 590 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 +T K++I+D G V IAS A E A+++I +T +++ G + +++ GAFV Sbjct: 591 RTNTKIDIEDSGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEI 650 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ++G++HISQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q+ Sbjct: 651 LPGKEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704 >gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC 700122] gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC 700122] Length = 769 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 297/695 (42%), Positives = 424/695 (61%), Gaps = 26/695 (3%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 ++E E G+ ETG +A+Q+ GAVL GET VL T V + KD DFFPLTV++ E Sbjct: 35 SLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEKD-YDFFPLTVDFME 93 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RE R ++ L +RM+DR IRP F++ +K E V+ D E++ Sbjct: 94 KMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDGENA 153 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 P + + ASAAL+++ PF+GPV ++ + ++++NP E + S L+L ++GT+ Sbjct: 154 PDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIAGTK 213 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE- 241 D + MVE A+Q+ E+ +L A+ FG EAI A C K+ + D K E Sbjct: 214 DYISMVEAGADQVGEEDMLAAMNFGQ-------EAI---AAFCEKQAEFLSMVDIQKREW 263 Query: 242 ---------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEI 291 E + + + +K R ++++LK + FS E + +I Sbjct: 264 PIHVPDASIAERVNAHYDAMSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDI 323 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + + ++ +R ++++ R DGR E +R + + G L R HGS LF RG TQ + V Sbjct: 324 AAACKALEKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSV 383 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG + Q +D++ +M YNF P TGEV RMGAP RRE+GHG LA RAI P Sbjct: 384 ATLGLLNEAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILP 443 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP +FPY++R+VSE+ ES+GSSSMA+ CGS LALMDAGVPI PV+G+AMGL+K+ D Sbjct: 444 VLPNEDEFPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDD 503 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 +ILSDI G ED LG MDFKV GT GITA+QMD K G+S I+ AL QAK GR HI Sbjct: 504 GVVILSDIQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHI 563 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L+ M ++ R +L + PR+E + IP ++IR VIG GG+ IRGI + TGA + I +DG Sbjct: 564 LSAMLDEIAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDG 623 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 TV IA+ A AA + ++ I PEV ++Y+G VV + FGAFV +DGL+HIS+ Sbjct: 624 TVHIAAVDQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISR 683 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685 ++ RV + DV+ GDTV V++++ D + GK+ L Sbjct: 684 MANGRVGQVEDVLNLGDTVKVEVIEIDSKTGKVSL 718 >gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 948 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 287/746 (38%), Positives = 443/746 (59%), Gaps = 62/746 (8%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I + R + +ETG RQ+ G+V+ T GET+V TV D + DFFPL+VNYQE Sbjct: 92 SVKIPFGDRHILVETGHTGRQASGSVMVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQE 151 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+LI R+IDR +RP K + +ETQ++ V+ +D S Sbjct: 152 RFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 211 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 +++ AA A+ LS +P + G +V + ++++NP E ++ LDL ++GT A Sbjct: 212 SDALAVTAAGIAVALSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESKLDLVMAGTDSA 271 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242 +LM+E N L E+ +L+A+ G + + + + L K C K P + D+ +L + Sbjct: 272 ILMIEGYCNFLPEEKLLEAVQVGQDAVRAICNEVDALVKKCGK-PKMHDAIKLPPPELYK 330 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-----FSSEHSSWNEGEIVS---- 293 + ++ ++L I K R K + L++K++S F S+ +S+ E V+ Sbjct: 331 HVKEIAGDELVNVLQIRNKIPRRKALSSLEEKVISILTEEGFVSKDTSFGTTETVADLLE 390 Query: 294 ----------------------------------------VFEDIQAKVVRTVMLDKKVR 313 VF+++ ++ +R +++ R Sbjct: 391 EEEEDEEFVVDGEVDEGDIHIKPVSRKSSPLLYSEVDVKLVFKEVTSQFLRRRIVEGGKR 450 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372 DGR+++ +R I+++ GLL R HGS+LF RG+TQ++ V TLG ++ Q VD+L + Sbjct: 451 SDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEFK 510 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 F + Y+F P + GEV RMGAPSRREIGHG LA RA+ P+LP A FPYT+R+ S ITES Sbjct: 511 RFYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADFPYTIRVESTITES 570 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486 +GSSSMA+VCG LAL DAGVP+ +AGIAMG+V D ++F +ILSDI+G ED Sbjct: 571 NGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDAS 630 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAG + G+TA QMD+K+GGI+ +M AL QA+ GR HIL EM K +L Sbjct: 631 GDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRRALLQARDGRKHILAEMLKCSPSPSKRL 690 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605 + P + +M + P ++ +IG GGK +R I+E+TG + ++ DDDGT+KI + L+ +E Sbjct: 691 SKHAPLIHMMKVDPQKVNMIIGSGGKKVRSIIEETGVEAIDTDDDGTIKITAKDLSSLEK 750 Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 ++ +I ++T VP V IY+ +K + +G FV R+GL HIS+L++ +AK D Sbjct: 751 SKSIISNLTMVPTVGDIYRNCEIKTIAPYGVFVEIAPGREGLCHISELTSSWLAKAEDAF 810 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VKL++ +++G++KLS K + Sbjct: 811 KVGDRVDVKLIEVNEKGQLKLSRKAL 836 >gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] Length = 922 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/751 (38%), Positives = 450/751 (59%), Gaps = 63/751 (8%) Query: 2 FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F H +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL Sbjct: 84 FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER AVG+ GG+ +RE R ++E+LI R+IDR +RP K + NETQ++ V+ + Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +P +++ +A A+ LS +P + G +V I G++++NP + E ++ LDLF++ Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT A+L +E +N L E+++L+A+ G + + AI LAK K P ++D+ Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLEAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322 Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284 +L + + ++ E+L + I K R K I L++K+ V++ + E Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 382 Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308 ++E ++ VF+++ +K++R ++ Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R DGR + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502 Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + + F + Y F P + GEV R+GAPSRREIGHG LA RA+ +LP FPYT+R+ S Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481 + ES+GSSSMA+VCG LAL DAGVP+ VAGIAMG+V D ++F +ILSDI+G Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED G MDFKVAG + G+TA QMD+K+GGI+ IM AL QAK GR HIL EM+K Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600 L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI + + Sbjct: 683 PTLSLSKYAPLIHIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659 A +E A+ +I +T VP V IY+ +K M +GAFV R+GL HIS+LS E +AK Sbjct: 743 ASLERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D K GD + VKL++ +++G+++LS++ + Sbjct: 803 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 833 >gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium MS024-2A] gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium MS024-2A] Length = 709 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/699 (41%), Positives = 431/699 (61%), Gaps = 18/699 (2%) Query: 6 TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T EI + GR + +ETG++A+Q+DG+V+ G+ ++LAT V R DF PLTV+Y+ Sbjct: 7 TQEIRFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASP-VDFLPLTVDYR 65 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ A G+ PGG+ +RE+RP++NE+L R++DR +RPLF K Y ETQV+I +M HD Sbjct: 66 EKFAAAGRFPGGFFKREARPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENV 125 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P ++ +AAS A+ LS +PFE P+ +V ++G +++NP ++ D +D+ + + D Sbjct: 126 MPDALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQLDASDIDIMIGASAD 185 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI---DSKDFSKL 240 +V MVE E +++SE+ +LDAI FGH K I+A LA+ K+ + + KD S Sbjct: 186 SVAMVEGEFDEISEEEMLDAISFGHEAIKDQIKAQIALAEAVGKKQVRTYEEEDKDDSLE 245 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED-IQ 299 +E ++ ++ K R +Q ++K+ + FS E +GE++S + + Q Sbjct: 246 KEIHDATYQKYYDIAKKGLSKAERSEQFSEVKEASKTSFSEEDLE-EKGELISRYNNSAQ 304 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L++ +R+DGR + +R I +V L THGS+LF RG+TQA+ TLGT + Sbjct: 305 KKAVRDLVLEEGIRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTSRE 364 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +DS S F +HYNF P TGE + SRRE+GHG LA+RA+ V+P Sbjct: 365 ANMIDSPSHQGEETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKKVMPDDC-- 422 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 PYT+RIVSE+ ES+GSSSMATVC ++ALMDAGV I KPV+GIAMGL+ DGD F +LSDI Sbjct: 423 PYTVRIVSEVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAVLSDI 482 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+KI G+ +IM AL QA+ GRLHIL+ + + + Sbjct: 483 LGDEDHLGDMDFKVTGTADGITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIETI 542 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVK 594 + + P++ +P + I +IG GGKVI+ + + +G + I++D G ++ Sbjct: 543 ATPNEDVKAHAPKMITRRVPNEFIGAMIGPGGKVIQELQKVSGCTIVINEDPVTEEGIIE 602 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQL 652 I +S I I S+T P V Y+ +V+K++DFGA V + A + L+H+S+L Sbjct: 603 ILGTSPEGIAMVEAKIDSVTFKPIVGNTYQVKVIKMLDFGAVVEYIDAPGNEVLLHVSEL 662 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 + ER DVV GDT+ VK D R K K+S K + Sbjct: 663 AWERTENVGDVVSMGDTLEVKYFGIDSRTRKEKVSRKAL 701 >gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9311] gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. CC9311] Length = 721 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 293/704 (41%), Positives = 420/704 (59%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+V+ G+T VL T + +DG DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSKG-RDGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRESRP E LI R+IDR +RPLF +++ Q++ M D Sbjct: 63 ERLYAAGRIPGSFMRRESRPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+ +PF GP+ +V + +VLNP E ++G LDL V+GT Sbjct: 123 PADVLAVTGASMATLLAKIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPQ 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239 V+MVE ANQL E V++AI FG+ +I+A + K E ++ ++ + K Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVSELIKAQQSILKEAGIEQVIPEAPEQDKTLPV 242 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290 LE+ S+ I E L F K R +++D ++ S N Sbjct: 243 YLEKACSKSIGEVL--GQFEQTKAERDEKLDAIRSTTAETIQGLKDSDPVRVAVSANGKA 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + ++R +L R+DGR+ + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LPNSFKALTKTLMRQQILKDGKRVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L+ + ++ HYNF + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPAYSVGETRPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVP+ PV+G AMGL+K+ Sbjct: 421 VPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GD+ IL+DI G ED L MDFKVAGTD GITA+QMDMKI G+ +I+ A+ QA+ RL Sbjct: 481 GDEVKILTDIQGIEDFLVDMDFKVAGTDKGITALQMDMKITGLPVSIVADAVNQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+ I E+T K++I+D Sbjct: 541 HILEKMMEAIESPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKNITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A E A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 SGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q+ Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704 >gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera] Length = 942 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 300/759 (39%), Positives = 445/759 (58%), Gaps = 72/759 (9%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I R + +ETG I RQ+ G+V T GET+V +V + DFFPL+VNYQE Sbjct: 79 SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+LI R+IDR +RP K + +ETQ++ V+ +D S Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++ AA A+ LS LP V G +V + ++++NP E + S LDL V+GT A Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS------KDFS 238 +LM+E N L E+ +L A+ G + + + + LAK K P ++D+ + + Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGK-PKMLDAIKLPPPELYR 317 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------------- 282 +EE Q + + L++ IP R K + L++++++ + E Sbjct: 318 HVEEIAGQQLGKVLQIRNKIP----RRKALISLEEEVLTILTEEGYVSKDETLGTAETIQ 373 Query: 283 ------------------------------HSS---WNEGEIVSVFEDIQAKVVRTVMLD 309 SS ++E ++ VF+++ +K +R +++ Sbjct: 374 DLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVE 433 Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 R DGR + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+ Q +D+L Sbjct: 434 GGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDV 493 Query: 370 -QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + F + Y+F P GEV RMGAPSRREIGHG LA RA+ P+LP FPYT+R+ S Sbjct: 494 DELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVEST 553 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGD 482 ITES+GSSSMA+VCG LAL DAGVP+ +AGIAMG+V + ++F +ILSDI+G Sbjct: 554 ITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGS 613 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED G MDFKVAGT+ GITA QMD+K+GGI+ IM AL QAK GR IL EMSK Sbjct: 614 EDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLP 673 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLA 601 +L ++ P + IM + P++I +IG GGK ++ I+E+TG + ++ DDG VKI + L Sbjct: 674 AKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLT 733 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E ++ +I S+T VP V IY+ +K + +G FV R+GL HIS+LS +AKT Sbjct: 734 SLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKT 793 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697 D K GD + VKL++ +D+G+++LS K + + N KP Sbjct: 794 EDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832 >gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] Length = 743 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 288/701 (41%), Positives = 439/701 (62%), Gaps = 27/701 (3%) Query: 9 IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 IE A GR + +ETG++A+Q+DGAV G TV+LATV + G DF PL V Y+E+ Sbjct: 9 IELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKF 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 A G+ PGG+ +RE + ++ EIL SR++DR++RPLF Y E V + + D E P Sbjct: 69 SAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFSADGEDMPD 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 ++ +AASAAL +S +PF GP+ +V I+G+YV+NP E ++ +D+ V T D ++ Sbjct: 129 ALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMVGATLDNIM 188 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 MVE E +++ E +L+AI H K +A +L++ C K + +++ E Sbjct: 189 MVEGEMDEVQESEMLEAIKVAHEAIKVQCQAQLELSEACGK----LVKREYC--HEVNDD 242 Query: 247 MIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFE 296 +++D+ C+ +K+ R + + + ++ + FS E + + E++ + Sbjct: 243 ELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIGRYYH 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT Sbjct: 303 DVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGT 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ ++P Sbjct: 363 KADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRMIP-- 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474 +PY +R++S+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL+ + G ++ Sbjct: 421 TDYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGQNYA 480 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL + Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGK 540 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---G 591 + + E R L PR+E M I + I VIG GGK+I+GI E+TGA + I+++ G Sbjct: 541 IMEAQPEVRPDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAVITIEEEDGVG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++I+ ++ A I+AA I++I VPE+ +IY+G++ +M +GAFV F +DGL+HIS+ Sbjct: 601 KIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLLHISE 660 Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +R+ +KEGDT+ VKL+D D + GK KLS KV+ Sbjct: 661 IDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVL 701 >gi|225570607|ref|ZP_03779632.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM 15053] gi|225160620|gb|EEG73239.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM 15053] Length = 695 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 281/693 (40%), Positives = 416/693 (60%), Gaps = 15/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ R+A+Q++GAVL YG+T VL T ++G DFFPL+V Y ER Sbjct: 6 EMELAGRKLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 Y+VGKIPGG+ +RE + +EN +L R+IDR +RPLF K Y+N+ + VM D + SP Sbjct: 66 YSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 + +M+ A+ A +S +PF+GP+ QV ++ V NP + + S + L V+ T+D V+ Sbjct: 126 LTAMLGAAIATTISDIPFDGPISATQVGLVDNTLVFNPTAAQKEASDMALTVASTRDKVI 185 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M+E AN++ ED +++AI H + VI I + C K+ +S + EE+ Sbjct: 186 MIEAGANEVPEDKMIEAIFAAHELNQKVIAFIDTIVAECGKQKHTYES---CAVPEELFA 242 Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I+E ++ + F +K R + I + ++ F +E W E +V++ Q K Sbjct: 243 AIRELVPPQEMEEAVFTDDKQTREENIRVITARLEEAF-AEKEEWLEVLSEAVYQ-YQKK 300 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VR ++L R DGR + +R ++A++ L+ R HGS++F RG TQ V TL + Q Sbjct: 301 TVRKMILKDHKRPDGRAVDQIRALAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPLAEAQ 360 Query: 362 YVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +D L + + +M HYNF + GE P RREIGHG LA RA+ PVLP +FP Sbjct: 361 RLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSETEFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSD 478 Y +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV DD+++L+D Sbjct: 421 YAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYLVLTD 480 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537 I G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ K+ R IL+E M+K Sbjct: 481 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVMNK 540 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R ++G + P++ M I P +I +V+G GK I I+EQTG K++I DDG V I Sbjct: 541 TIAEPRPEVGAYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 600 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + A+ +I I E +I +G+VV + +FGAF+ F ++G+VHIS++S ER+ Sbjct: 601 VEADSMAEAKRLIEIIVADFEAGQILEGKVVSIKEFGAFLEFAPGKEGMVHISKISKERI 660 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD V V L D G+I SMK V Sbjct: 661 NHVEDVLTLGDVVTVVCLGKDKMGRISFSMKDV 693 >gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] Length = 743 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 288/701 (41%), Positives = 439/701 (62%), Gaps = 27/701 (3%) Query: 9 IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 IE A GR + +ETG++A+Q+DGAV G TV+LATV + G DF PL V Y+E+ Sbjct: 9 IELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKF 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 A G+ PGG+ +RE + ++ EIL SR++DR++RPLF Y E V + + D E P Sbjct: 69 SAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFSADGEDMPD 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 ++ +AASAAL +S +PF GP+ +V I+G+YV+NP E ++ +D+ V T D ++ Sbjct: 129 ALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMVGATLDNIM 188 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 MVE E +++ E +L+AI H K +A +L++ C K + +++ E Sbjct: 189 MVEGEMDEVQESEMLEAIKVAHEAIKIQCQAQLELSEACGK----LVKREYC--HEVNDD 242 Query: 247 MIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFE 296 +++D+ C+ +K+ R + + + ++ + FS E + + E++ + Sbjct: 243 ELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIGRYYH 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT Sbjct: 303 DVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGT 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ ++P Sbjct: 363 KADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRMIP-- 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474 +PY +R++S+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL+ + G ++ Sbjct: 421 TDYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGQNYA 480 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL + Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGK 540 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---G 591 + + E R L PR+E M I + I VIG GGK+I+GI E+TGA + I+++ G Sbjct: 541 IMEAQPEVRSDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAIITIEEEDGVG 600 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++I+ ++ A I+AA I++I VPE+ +IY+G++ +M +GAFV F +DGL+HIS+ Sbjct: 601 KIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLLHISE 660 Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +R+ +KEGDT+ VKL+D D + GK KLS KV+ Sbjct: 661 IDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVL 701 >gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] Length = 727 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 289/709 (40%), Positives = 439/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DGAV+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILYSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E N++SE +L+A+ H CK +E + ++ +E Sbjct: 185 ENIMMVEGEMNEVSEQDLLEALKAAHEAIKIHCKAQMELMEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ + +C+ K+ R D + ++ + F+ E Sbjct: 235 YCHEENDEDLRKAVHDACYEKAYAIAASGNRNKHERQDAFDAICEEFKAQFTEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 G I + D++ + +R +LD+ R+DGR + +R I +VG L HGSS+F RG+TQ+ Sbjct: 295 GMIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGVPI PV+GIAMGL+K Sbjct: 415 LKGQIP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT +GITA QMD+K G++ +I+ AL QAK Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +ILN++++ + + R L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILNKLTECIGKPRQDLKPNAPRIETMIIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPE+ ++Y+G+V +M +GAFV F + Sbjct: 593 IEEINGVGRIEIAGNNKKMIDDAMRLIKGIVAVPEIGEVYQGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDDIEVKLLDIDSKTGKFKLSHKVL 701 >gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5] Length = 744 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 288/692 (41%), Positives = 434/692 (62%), Gaps = 16/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G+T++LATVV + K DF PL V Y+E+ + G+ Sbjct: 19 GRQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKEKYASCGR 78 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+++RE R ++EIL++R+IDR++RPLF Y E V +N++ D + P ++ + Sbjct: 79 YPGGFMKREGRANDSEILVARLIDRALRPLFPADYHAEVYVTVNLISADKDIQPDALAGL 138 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++G+YV+NP+ E D+ LD+ V GT D +LMVE E Sbjct: 139 AASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVDLDIMVGGTIDNILMVEGE 198 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE+V+L AI F H E K +L+K K+ V + + +EE+ Q+I ++ Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEENDEELRQLIVKE 256 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305 L + K+ R + L+ + + +S E + I F +D+Q K +R Sbjct: 257 LYDKAYAIATSGTMKHEREDMFNALEAEFAARYSEEELAEKAMLIHKYFHDDVQKKAMRN 316 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD+ +R+DGR ++ +R I +V L HGS++F RG+TQ++ VTLGT+ DE+ D Sbjct: 317 MILDEGLRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDE 376 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + F++HYNF P +TGE SRREIGHG LA RA+ P++P + PY +R+ Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMVPLGEENPYAVRV 436 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483 VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ D + +LSDI GDE Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSQSGKWAVLSDILGDE 496 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S ++ AL+QA++GRLHIL ++++ ++E R Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRLHILGKLTECIAEPR 556 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600 F PR+ + IP D I VIG GGKVI+ I + T +D+ G V I Sbjct: 557 ADYKPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITEVDNKGIVDIFGQDK 616 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A ++ A I++I +PEV + Y G++ ++ FGAFV +D L+HIS++ +R Sbjct: 617 AALDGALNRIKAIVAIPEVGETYHGKIRSIVTFGAFVEIMPGKDALLHISEIDYKRFETM 676 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGD + VKL+ D + K KLS KV+ Sbjct: 677 EETGLKEGDEIDVKLIGIDPKTNKFKLSRKVL 708 >gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9211] gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 722 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 287/708 (40%), Positives = 422/708 (59%), Gaps = 24/708 (3%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T + + GR ++L TGR A Q+ G+VL G+T VL T ++G DF PL +Y+ Sbjct: 4 QTTTVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSPG-REGADFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ QV+ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ A+S A +L+ +PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PSDVLAVTASSMATLLAEIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLE 241 V+M+E ANQLSE V++A+ FG+ +I+A + K ID K D +++ Sbjct: 183 GVVMIEAGANQLSEQDVIEAVDFGYEAVTELIKAQQSILKESG-----IDHKKPDEQEID 237 Query: 242 EEMSQMIKEDLR------VSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWN 287 E + + ++ R + F K R +++++K + S + S N Sbjct: 238 ETLPNYLDKNGRKPIGELLKKFELTKKERDLKLEEIKTNLGEKIDSLKEDNAVKKAISSN 297 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346 + + F+ + K++R ++ R+DGR + VR I A G+L +R HGS LF RG T Sbjct: 298 PKLLTTSFKSLTKKLMREQIIKDGKRVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLT 357 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + TLGT D Q +D L+ + ++ HYNF P + GE M P RRE+GHG LA Sbjct: 358 QVLSTATLGTPSDAQEMDDLNPSSDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAE 417 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP FPY LR+VSE+ S+GS+SM +VCGS++AL+DAGVP+ PV+G AMGL Sbjct: 418 RALIPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGL 477 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +K+G + IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+ + A+ QAK Sbjct: 478 IKEGKEIRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKVTGLEVKTIADAINQAKP 537 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R HIL +M++ + + R L PR+ I P+ I VIG GG+ I+GI E+T K++ Sbjct: 538 ARTHILEKMNETIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+D G V IAS E A+++I +T +I+ G + +++ GAFV ++G+ Sbjct: 598 IEDGGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEIFTGSITRIIPIGAFVEILPGKEGM 657 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +HISQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN Sbjct: 658 IHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVSQNN 705 >gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] Length = 877 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 290/736 (39%), Positives = 441/736 (59%), Gaps = 51/736 (6%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V I R + +ETG I RQ+ +V+ T GET++ +V + D DFFPL+V+YQE Sbjct: 75 SVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHYQE 134 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE + ++E+L+ R+IDR +RP K + ETQ++ V +D S Sbjct: 135 RLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHS 194 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P +++ AA A+ LS +P + + G ++ I+ Q+V+NP ++ + S LDL ++GT A Sbjct: 195 PDCLAITAAGIAVALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMENSELDLMMAGTDSA 254 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEEE 243 +LM+E + L+E+ +L+A+ G + + +AI L + C K+ +V S +L Sbjct: 255 ILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMVDAISLPPPELYRH 314 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSS------------ 285 + + ++L + I K R K + L+ K++S Y S + SS Sbjct: 315 VEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDASSGVTESLADIVED 374 Query: 286 ----------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVR 323 + E ++ VF+++ +K +R +++ R DGR +R Sbjct: 375 EDEDEIIVDGEVDEGDFPIKPLFAEVDVKLVFKEVSSKYLRRRIVEGGRRSDGRSPWELR 434 Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ-RNDFMMHYNFLP 382 I++Q GLL R HGS+LF RG+TQ++ VVTLG + Q +D+L T+ F + Y+F P Sbjct: 435 PINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDSKSFYLQYSFPP 494 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 GEV R+GAPSRREIGHG LA RA+ P+LP FPYT+R+ S ITES+GSSSMA+VC Sbjct: 495 SCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVC 554 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGT 496 G LAL DAGVPI PVAGIAMGLV D +F +ILSDI+G ED G MD K+AG Sbjct: 555 GGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGAEDASGDMDLKIAGN 614 Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556 +SGI+A QMD+K+ GI+ +M AL QA+ GR HILNEMSK L + P + +M Sbjct: 615 ESGISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSKSSPPPSKALSPYAPLIHVM 674 Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615 + P+++ +IG GGK I+ I+E+TG ++ DDGTVKI + L+ +E ++ +I ++T Sbjct: 675 KVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKTIIANLTM 734 Query: 616 VPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 VP+V +IY+ +K + +GAFV R+GL HIS+LS+ +AK D K GD + VKL Sbjct: 735 VPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKAEDAFKVGDRIDVKL 794 Query: 675 LDFDDRGKIKLSMKVV 690 ++ +D+G+++LS + + Sbjct: 795 IEINDKGQLRLSSRAL 810 >gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus ATCC 8482] gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus ATCC 8482] Length = 711 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E ++SE +L A+ H CK +E + ++ +E Sbjct: 185 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ +R +C+ K+ R D ++ + + ++ E Sbjct: 235 YCHEENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 295 ALIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + R F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PYT+R+VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+K Sbjct: 415 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR HILN++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + Sbjct: 533 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 592 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPEV ++Y G+V VM +G FV F + Sbjct: 593 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701 >gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho melanesiensis BI429] gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho melanesiensis BI429] Length = 699 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/692 (40%), Positives = 439/692 (63%), Gaps = 23/692 (3%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E+ GR L ++ G++A+QS GA +G++VVLAT + +G DF PLTV YQE+ YA Sbjct: 10 EFFGRKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRVIEGVDFVPLTVEYQEKFYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPGG+++RE +PTE+ IL +R+IDR IRPLF K +N+ Q+I+ V+ D ++ P V Sbjct: 70 AGKIPGGFIKREGKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGDTPPDVT 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 + AAS AL S +PF+G V G ++ Y++G++V+ P ++ + S LD+ V+G++DA+ MV Sbjct: 130 GIFAASLALNFSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSKLDIVVAGSKDAITMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLEE 242 E EA +++E+ ++ A++ H K +IE ++ KM +EP D + EE Sbjct: 190 EGEAKEVTEEEMVQALMVAHEAIKKLIEFEEEILREFNVEKMEIEEPKPKDEL-IGRFEE 248 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS------VFE 296 +++ +LR I EK R ++ + K++++S E +E ++ +F+ Sbjct: 249 ---LLVENELRKRLLIKEKLERSLKLKEYKEELISKIFEEFEIDDEEKLTQEMLLKELFD 305 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + K++R +++++ +R DGR E +R I+ +VG+L RTHGS+LF RG+TQ++ +VTLG Sbjct: 306 EKAKKLMRKIIINEGIRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGA 365 Query: 357 REDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 +EQ VD++ GT+R F++HYNF P + GEV + P RREIGHG LA RA+ V P Sbjct: 366 PMEEQIVDTIMEEGTKR--FILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVAP 423 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 FPY +R+VSEI ES+GSSSMATVC SLALMDAGVPI VAG+AMGL+ D ++ + Sbjct: 424 DEEDFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEV 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G EDH G MDFKVAGT +GITA QMD KI G+ E ++ AL+QA+ R+ IL+ Sbjct: 484 VLTDIQGLEDHWGDMDFKVAGTRNGITAFQMDCKIAGVGEELLKKALKQARVARMRILDI 543 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTV 593 M + + E R L + P + + I P ++ +IG GGKVI+ IV++ +++IDD G V Sbjct: 544 MFETIKEPRKSLSPYAPLIANIEIDPMKVGELIGPGGKVIKSIVKEFDVEISIDDVTGKV 603 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + ++ A E I+++T EV +++G++ ++ +G FV + GL H S+L Sbjct: 604 SVYGKDQNKVNQAIEYIKTLTREIEVGDMFEGKITRIEPYGLFVELMPGKIGLAHSSKLG 663 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + + K GD + V +++ DD G+I+L Sbjct: 664 NDS-KEFRKKYKVGDVIKVVVVNIDDSGRIQL 694 >gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_3_47FAA] gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus PC510] gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A] gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_3_47FAA] gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus PC510] gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A] Length = 728 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 23 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 82 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V+ T Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 201 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E ++SE +L A+ H CK +E + ++ +E Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ +R +C+ K+ R D ++ + + ++ E Sbjct: 252 YCHEENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 312 ALIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + R F++HYNF P +TGE RREIGHG LA RA Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PYT+R+VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+K Sbjct: 432 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR HILN++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPEV ++Y G+V VM +G FV F + Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718 >gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana] gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 922 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 292/751 (38%), Positives = 449/751 (59%), Gaps = 63/751 (8%) Query: 2 FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F H +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL Sbjct: 84 FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER AVG+ GG+ +RE R ++E+LI R+IDR +RP K + NETQ++ V+ + Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +P +++ +A A+ LS +P + G +V I G++++NP + E ++ LDLF++ Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT A+L +E +N L E+++L A+ G + + AI LAK K P ++D+ Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322 Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284 +L + + ++ E+L + I K R K I L++K+ V++ + E Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 382 Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308 ++E ++ VF+++ +K++R ++ Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R DGR + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502 Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + + F + Y F P + GEV R+GAPSRREIGHG LA RA+ +LP FPYT+R+ S Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481 + ES+GSSSMA+VCG LAL DAGVP+ VAGIAMG+V D ++F +ILSDI+G Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED G MDFKVAG + G+TA QMD+K+GGI+ IM AL QAK GR HIL EM+K Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600 L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI + + Sbjct: 683 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659 A +E A+ +I +T VP V IY+ +K M +GAFV R+GL HIS+LS E +AK Sbjct: 743 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D K GD + VKL++ +++G+++LS++ + Sbjct: 803 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 833 >gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana] gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 948 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 292/751 (38%), Positives = 449/751 (59%), Gaps = 63/751 (8%) Query: 2 FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F H +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL Sbjct: 110 FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 169 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER AVG+ GG+ +RE R ++E+LI R+IDR +RP K + NETQ++ V+ + Sbjct: 170 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 229 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +P +++ +A A+ LS +P + G +V I G++++NP + E ++ LDLF++ Sbjct: 230 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 289 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT A+L +E +N L E+++L A+ G + + AI LAK K P ++D+ Sbjct: 290 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 348 Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284 +L + + ++ E+L + I K R K I L++K+ V++ + E Sbjct: 349 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 408 Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308 ++E ++ VF+++ +K++R ++ Sbjct: 409 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 468 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R DGR + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G Sbjct: 469 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 528 Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + + F + Y F P + GEV R+GAPSRREIGHG LA RA+ +LP FPYT+R+ S Sbjct: 529 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 588 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481 + ES+GSSSMA+VCG LAL DAGVP+ VAGIAMG+V D ++F +ILSDI+G Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 648 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED G MDFKVAG + G+TA QMD+K+GGI+ IM AL QAK GR HIL EM+K Sbjct: 649 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 708 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600 L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI + + Sbjct: 709 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 768 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659 A +E A+ +I +T VP V IY+ +K M +GAFV R+GL HIS+LS E +AK Sbjct: 769 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 828 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D K GD + VKL++ +++G+++LS++ + Sbjct: 829 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 859 >gi|284992338|ref|YP_003410892.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus obscurus DSM 43160] gi|284065583|gb|ADB76521.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus obscurus DSM 43160] Length = 762 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 294/706 (41%), Positives = 425/706 (60%), Gaps = 37/706 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + ETGR+A+Q+ G+V+ T G+T++L+ R K+ DFFPLTV+ +ER YA Sbjct: 33 FGSRTITFETGRLAKQAAGSVVVTMGDTMLLSATTAGRQPKEHFDFFPLTVDVEERMYAA 92 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+I V+ D + V++ Sbjct: 93 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFAKGLRNEVQVVITVLSLDPDHLYDVLA 152 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184 + ASA+ LSGLPF GPV G +V +NGQ+V P E + D+ V+G A Sbjct: 153 INGASASTQLSGLPFSGPVGGTRVALVNGQWVGFPTHAELEDAVFDMVVAGRVLPDGDVA 212 Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKE 228 ++MVE EA + + ++V + + G KP I+A+ K AK A Sbjct: 213 IMMVEAEATEKTIELVAGGATAPTEEVVAQGLEAAKPFIKALCEAQSALAEKAAKPVADF 272 Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 P +D +D ++ +E + E ++ K R D+LK V+ + Sbjct: 273 PRFLDYQDDVYAAVESHAGARLAEVQAIAG----KQERNDATDELKDGTVAALAGRFEG- 327 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + F + KVVR +L KVR+DGR +R +SA+V +L R HGS+LF RG+T Sbjct: 328 REKEVSAAFRALTKKVVRQRILRDKVRIDGRGLTDIRPLSAEVEVLPRVHGSALFERGET 387 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 388 QILGVTTLNMLRMEQQLDTLSPVNRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 447 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 448 RALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGL 507 Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 V D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Sbjct: 508 VSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAQALT 567 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA+ RLHIL+ M++ + ++ ++ + PRV + IP D+I VIG G++I I ++TG Sbjct: 568 QARAARLHILDVMNEAI-DAPDEMSPYAPRVTTVRIPVDKIGAVIGPKGQMINAIQDETG 626 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640 A + I+DDGT+ + +S +AA + I +I + +P+V + + G VVK FGAFV Sbjct: 627 ADITIEDDGTIYVGASDGPSAQAAVDRINAIANPQMPKVGERFLGTVVKTTPFGAFVSLL 686 Query: 641 GARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGLVHIS+L +R+ K DVV GD + V++ D D RGKI L Sbjct: 687 PGKDGLVHISKLGGGKRIGKVEDVVNVGDKLQVEITDIDARGKISL 732 >gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. RCC307] gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. RCC307] Length = 719 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 287/706 (40%), Positives = 425/706 (60%), Gaps = 14/706 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L T R A Q+ G+VL G+T VL T ++G DF PLT +Y+ Sbjct: 4 ETRSISFDGREIRLTTRRYAPQAGGSVLIECGDTAVLVTATRANG-REGIDFLPLTCDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRESRP E L R+IDR IRPLF +++ Q++ VM D Sbjct: 63 ERLYAAGRIPGSFMRRESRPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P V+++ AS A +L+ +PF GP+ +V + ++LNP E ++ LDL V+GT + Sbjct: 123 PPDVLAVTGASLATLLAKIPFYGPMAAVRVGLLGDDFILNPSYREIERSELDLVVAGTAE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVIDSKDFSKLEE 242 V+MVE A QL E+ +++AI FG+ +I + +A++ ++ + + + + + Sbjct: 183 GVVMVEAGAQQLPEEDMIEAIDFGYEAVLELIRHQKETIAELGIEQVVPEKPAEDTTVPD 242 Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGEIV 292 +++ +D+ +S F K R Q+D +K K ++ S N + Sbjct: 243 YLAKQCTKDIGAVLSQFTLTKAERDSQLDSIKAKAAEAIAALKETDAVRAAVSSNGKLLG 302 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVV 351 + F+ + ++R ++ R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 303 NSFKALTKSMMRAQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLST 362 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLGT D Q +D L+ + ++ HYNF P + GE M +P RREIGHG LA RA+ P Sbjct: 363 ATLGTPSDAQEMDDLNPSNEKHYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERALLP 422 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP FPY LR+VSE+ S+GS+SM +VCGS+LALMDAGVPI+ PVAG AMGL+++G Sbjct: 423 VLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAAPVAGAAMGLIREGS 482 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +L+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++ + A+ QA+ RLHI Sbjct: 483 EVRVLTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAMKTIGEAVTQARPARLHI 542 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M + L + R + PR I P+ I VIG GG+ I+GI E+T K++I+D G Sbjct: 543 LEKMLEALDKPRDTMSPHAPRRLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDTG 602 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V +AS A E A+++I +T + + G+V +V+ GAFV ++G++HISQ Sbjct: 603 IVTVASHDGAAAEEAQKIIEGLTRRVSEGEYFDGKVTRVIPIGAFVEILPGKEGMIHISQ 662 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 LS +RV K DVV GD V V++ + D+RG+I L+++ V Q+ P Sbjct: 663 LSDQRVEKVEDVVNVGDEVRVRVREIDNRGRINLTLRGVPQDGSDP 708 >gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 613 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 266/611 (43%), Positives = 398/611 (65%), Gaps = 7/611 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE G P +ETG A+Q++GAV+ G+T VL V + DF PLTV Y+E+ Sbjct: 6 VETVVNGAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREK 65 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YA GKIPGG+++RE +P+E EIL++R IDR IRPLF K + N+ + + D + P Sbjct: 66 YYAYGKIPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDP 125 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 V+ +V ASAAL +S +PFEGP+ G +V ++GQ+++NP + S L++ V+G++DA+ Sbjct: 126 DVLGIVGASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAGSKDAI 185 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEE 243 +MVE A ++ E+V+L+A++FGH E K +IE +L K+ I ID ++ L+E+ Sbjct: 186 VMVEGGAKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKDKLEIPIDEEEIL-LKEK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 ++ E +R + I +K R KQI+ + +++ + + V ++D+ + V+ Sbjct: 245 FKELAYERIREAFNISDKKERNKQINAIFEEIKTTLEIPEEKVKKASFV--YKDVVSNVM 302 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L + R+DGR E +R I +VG+ R HGS++F RG TQA V VTLG+ + Q Sbjct: 303 RDLVLYENRRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIE 362 Query: 364 DSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +S+ +G FM+HYNF P +TGE SRREIGHG LA RA+ P++P +FPY Sbjct: 363 ESIEAGETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYV 422 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K D F++LSDI GD Sbjct: 423 IRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGD 482 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT G+T++QMD+K+ G+++ I+ AL+QA+ GR +IL+ M + + E Sbjct: 483 EDHLGDMDFKVAGTRDGVTSIQMDIKVRGLTKEILQKALEQARVGRYYILDLMYQAIPEP 542 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R +L + P V + + P++I +IG GK I+ I+E+TG K+++D G VKI ++S Sbjct: 543 RKELSPYAPTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYATSKVA 602 Query: 603 IEAAREMIRSI 613 E A +MI + Sbjct: 603 AEKAIDMINQL 613 >gi|171741337|ref|ZP_02917144.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC 27678] gi|171276951|gb|EDT44612.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC 27678] Length = 880 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGFEAAKPFIKVICEAQAELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 ++ E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ F PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+E+I SI + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|291458661|ref|ZP_06598051.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419194|gb|EFE92913.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral taxon 078 str. F0262] Length = 701 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 281/690 (40%), Positives = 426/690 (61%), Gaps = 9/690 (1%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+ Q++GA L YGET VL++ +DG DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDIGRVCAQANGAALMHYGETTVLSSCTASEKPRDGIDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGK PGG+ +RE+RP ++ IL R+IDR +RPLF K Y+N+ + V+ D + SP + Sbjct: 67 AVGKFPGGFKKREARPADSAILTDRVIDRPMRPLFPKDYRNDVLLDNLVLSVDQDCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 ++M+ +S A +S +PF+GP QV ING++++NP E S L L V+ T+D V+M Sbjct: 127 LAMLGSSLAACISDVPFDGPCASTQVGMINGEFIMNPGNAEKTASDLLLTVASTRDKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246 +E AN++S++ +++AI H + +I + C K+ S + L E + + Sbjct: 187 IEAGANEISDEKMIEAIYLAHGLNQQIIGFFDSIIAECGKKKHEYVSCSIPETLFERIRE 246 Query: 247 MIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 ++ E ++ + F +K R + + L +K+ FS + + + + + K VR Sbjct: 247 IVPEKEMEKAVFADDKKERDENLSVLSQKLEGAFSEDEEALS--LLPEAIYQYEKKTVRR 304 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L R DGR + +R + A+V L+ R HGS++F RG TQ + + TL + Q V+ Sbjct: 305 MILKDHKRPDGRRIDEIRPLEAEVDLIPRVHGSAMFKRGQTQILNITTLAPLSEVQKVEG 364 Query: 366 LSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L+ + +H YNF + GE P RREIGHG LA RA+ PVLP FPY +R Sbjct: 365 LNEYETEKRYLHQYNFPGYSVGEARASRGPGRREIGHGALAERALLPVLPSVEDFPYAIR 424 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGD 482 VSE ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV + +D+++L+DI G Sbjct: 425 SVSETMESNGSTSMASTCASCMSLMAAGVPIRKMVAGISCGLVTGESDEDYLVLTDIQGL 484 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541 ED G MDFKV GT GITA+QMD+KI G++ +I+ A+++A RL I++ M +SE Sbjct: 485 EDFFGDMDFKVTGTREGITAIQMDIKIHGLTRDIVEEAIRRAHEARLFIMDGVMKSAISE 544 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L + P++ + I P++I +VIG GKVI GI E+TGAK++IDD G + I+ LA Sbjct: 545 PRKELSPYAPKIITLQINPEKIGDVIGKQGKVINGISEETGAKIDIDDSGMISISGIDLA 604 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +E A+ +I SI + E +I G VV++M+FGAFV +DG+VHIS+L+ RV + Sbjct: 605 SLEKAKSIIESIVNDVEPGQIIDGTVVRIMNFGAFVQLSPNKDGMVHISKLADGRVNRVE 664 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 DVV+ GD V VK+L+ D G+I L+M+ +D Sbjct: 665 DVVQIGDKVRVKVLEIDKMGRINLTMRPMD 694 >gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5] gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5] Length = 775 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 274/683 (40%), Positives = 429/683 (62%), Gaps = 20/683 (2%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +ETG+ A+ +DG+V+ G T VL T V DF PL V+Y+ER A G+IP Sbjct: 15 PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+ +RE +PT+ EIL+SR+IDR IRPLF + + ++ + + D + P V+++ A Sbjct: 75 GGFTKREGKPTDREILVSRVIDRPIRPLFPEGFFHDVIITALTLSADDKYDPDVLAITGA 134 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193 SAAL +S +PFEGP+ G +V +NG++V NP ++ + LD+ ++GT+DA++MVE Sbjct: 135 SAALHISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEADLDIVMAGTKDAIVMVEGGGK 194 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMI 248 ++ E+V+ DA+ FG + K VIEA +L + K + + + LEEE + I Sbjct: 195 EIPEEVLADALFFGLDAIKEVIEAQERLREKVGKPKFEYQKVELPEDILKALEEECTPKI 254 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFEDIQAKVVRTV 306 E + +K R +D K+V F H E + ++ ++++++R Sbjct: 255 LEAFNIK----DKKERYSTLD----KIVEEFIEAHQIPEELHFAVKYFYKKLESRLMREK 306 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L + VR+DGR +R I +V +R HG+++F RG TQA V VTLGT ++ ++++ Sbjct: 307 VLKEGVRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETI 366 Query: 367 S-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + G FM+HY+ P + GE G P RREIGHG LA RAI P+LP ++P+ +R+ Sbjct: 367 AEGEVFKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEEYPFIIRV 426 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPI--SKPVAGIAMGLVKDGDDFIILSDISGDE 483 VS+I ES+GS+SMATVCG+SLAL DAGVP+ +K VAGIAMGL+ + D ++ILSDI GDE Sbjct: 427 VSDILESNGSTSMATVCGASLALFDAGVPMKDNKHVAGIAMGLILEKDRYVILSDILGDE 486 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GIT++QMD+K+ GI++ IM+ AL+QA+ GRL+IL +M + + E R Sbjct: 487 DHLGDMDFKVAGTKDGITSVQMDIKVKGITKEIMLDALKQAREGRLYILEKMYEAIPEPR 546 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 + +TP+VE++ +P ++ +IG GG ++ I ++TG KV + + G V + ++ Sbjct: 547 KEPHPYTPKVEVVDVPEEKAPLIIGPGGSTVKKIYDETGVKVWVGEQGKVYLFVFPGGDV 606 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A++MI+ I EV +YKG + +V +G FV + GL+H+S+++ E V ++ Sbjct: 607 EKAKQMIQDIVREVEVGAVYKGTITRVEPYGVFVELWPGKIGLLHVSKMA-EPVRSATEK 665 Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686 K G+ + VK+LD D+ G+ + + Sbjct: 666 YKVGEEIIVKVLDLDELGRPRFT 688 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 61/102 (59%), Gaps = 6/102 (5%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 +++D+ G + + + ++ ++ ++ P+V +Y+G+VV+V +GAF+ + + Sbjct: 677 LDLDELGRPRFTTIGIEDVGTEKKEVK-----PKVGDVYEGKVVRVEPYGAFIEYAPGKV 731 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 GL+H+S++ ERV K GD V VK+++ D++G+ K + Sbjct: 732 GLLHVSKMK-ERVKDARQKYKVGDVVKVKVVEIDEQGRPKFT 772 >gi|309802878|ref|ZP_07696979.1| guanosine pentaphosphate ligase I/polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308220345|gb|EFO76656.1| guanosine pentaphosphate ligase I/polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 763 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 ++ E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ F PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+E+I SI + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea] Length = 822 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 298/741 (40%), Positives = 435/741 (58%), Gaps = 60/741 (8%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 ++V+I + R + +ETG I RQ+ GAV T GET+V TV + DFFPL+VNYQ Sbjct: 78 YSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQ 137 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER A G+ GG+ +RE RP +NE+L+ R+IDR +R K + +ETQ++ V+ +D Sbjct: 138 ERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLH 197 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P +++ AA A+ LS LP PV G +V + G+Y++NP +E + S LDL V+GT Sbjct: 198 PPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTDS 257 Query: 184 AVLMVE-----------LEANQLSEDVV-------------------LDAIIFGHNECKP 213 A+LM+E LEA ++ +D V +DAI E Sbjct: 258 AILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELYK 317 Query: 214 VIEAIS--KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEK----YV 263 +E I+ +L + + K LEE++ ++ + V+ IPE YV Sbjct: 318 HVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLYV 377 Query: 264 RCKQIDDLKKKMVSYFSSEHSS----------WNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 ++ +++ H ++E ++ VF++ +K +R +++ R Sbjct: 378 DEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGRR 437 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372 DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G + Sbjct: 438 SDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDESK 497 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 F + Y+F P GE R+GAPSRREIGHG LA RA+ P+LP +FPYT+R+ S ITES Sbjct: 498 RFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITES 557 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486 +GSSSMA+VCG SLAL+DAGVP+ P+AGIAMG+V D +F +ILSDI+G ED Sbjct: 558 NGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDAS 617 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAG +TA QMD+K+GGI+ ++M AL QAK GR IL EMSK L L Sbjct: 618 GDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKTL 677 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605 + P + +M + P+++ +IG GGK +R I+E TG + ++ DDGTVKI + L +E Sbjct: 678 SIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLEK 737 Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 ++ MI ++T VP + IY+ +K + +GAFV R+GL HIS+LS +AK D Sbjct: 738 SKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSPSYLAKAEDAF 797 Query: 665 KEGDTVWVKLLDFDDRGKIKL 685 K GD V VKL++ +++G++ L Sbjct: 798 KVGDRVDVKLIEVNEKGQLAL 818 >gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium psychrophilum JIP02/86] gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 711 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/692 (42%), Positives = 429/692 (61%), Gaps = 20/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETGR+A+Q+DG+V+ G+TV+L TVV R G DF PLTV+Y+E+ A G+ Sbjct: 15 GRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP+++E+L R++DR +RPLF Y E QV+I +M HD E P ++ + Sbjct: 75 FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEEVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAAL LS +PFE + A+V I+G++++NP R + +D+ + + D++ MVE E Sbjct: 135 AASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSIAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD------FSKLEEEMS 245 ++SE +L+AI F H K I A +LA K+ + K+ ++K++E Sbjct: 195 MKEISEAEMLEAIKFAHEHIKVQIAAQERLAAAFGKKEVRTYEKEKSDDAIYAKVKEAAY 254 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304 I +V K R D +K+++ + F+ E + N G++VS F + VR Sbjct: 255 DKIYNIAKVGS---AKQERTAAFDAVKEEVKALFTEEELAEN-GDLVSKYFYKTNKEAVR 310 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V LD R+DGR + +R I +V L HGS+LF RG+TQA+ TLGT + +D Sbjct: 311 NVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQID 370 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A PYT+R Sbjct: 371 SPSQQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--ADCPYTIR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ ES+GSSSMATVC +L+LMDAG+ + +PV+GIAMGL+ DG+ F +LSDI GDED Sbjct: 429 VVSEVLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVLSDILGDED 488 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+KI G+ IM AL QA+ GRLHILN +++ L+ ++ Sbjct: 489 HLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTETLATPKV 548 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLA 601 + + P++ + IP + I +IG GGKVI+ + + TG + +D+ G V+I + A Sbjct: 549 DVKAYAPKIIMRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEMGVVEILGTDPA 608 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAK 659 IEA I SIT P++ + Y+ +V+K++DFGA V + + L+H+S+L+ ER Sbjct: 609 GIEAVLAKIESITFKPQIGEAYEVKVIKMLDFGAVVEYTAVPGNEVLLHVSELAWERTEN 668 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +DVV GD VK L D + K K+S K + Sbjct: 669 VTDVVNMGDVFMVKYLGLDPKTRKEKVSRKAL 700 >gi|238916832|ref|YP_002930349.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC 27750] gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC 27750] Length = 723 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 279/690 (40%), Positives = 423/690 (61%), Gaps = 13/690 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E AGR L+++ GR+ Q++GA L YG+TVVL+T + ++G DFFPL+V Y+E+ Sbjct: 35 EMELAGRTLRVDIGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKM 94 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D P Sbjct: 95 YAAGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDENCRPE 154 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186 +++M+ ++ A +S +PF+GP Q+ I+G++++NP + Q G L L V+ T+ V+ Sbjct: 155 LLAMIGSAIATSISDIPFDGPCATTQIGMIDGEFIVNPSQAQWQDGDLQLTVASTKQKVI 214 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMS 245 M+E AN++ ED +++AI H+ + +I I K+ KE + +++ E M Sbjct: 215 MIEAGANEIPEDKMIEAIYKAHDINQTIIAFIDKIVAEVGKEKHSYVSCAVPAEMFEAMK 274 Query: 246 QMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302 Q++ E++ V+ F +K R K ID + +KM F +++ W GE V + Q K Sbjct: 275 QVVSPEEMEVAVFTDDKQTREKNIDAVTEKMKEAF-ADNEEWLAVLGEAVYQY---QKKT 330 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L R DGR +R ++A+V ++ R HGS++F RG TQ VVTL + Q Sbjct: 331 VRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDVVTLAPLSEAQK 390 Query: 363 VDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VD L ++ HYNF + GE P RREIGHG LA +A+ PVLP +FPY Sbjct: 391 VDGLDENVTTKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALVPVLPSEEEFPY 450 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479 +R VSE ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV + DD+I+L+DI Sbjct: 451 AIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGETDDDYIVLTDI 510 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538 G ED G MDFKV GT GITA+QMD+KI G++ I+ A+++ + RL I++ M Sbjct: 511 QGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIRRTREARLFIMDTCMKPA 570 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E R +GE+ P++ +I P +I V+G GK I I+++ G K++I DDG V + Sbjct: 571 IAEPRKTVGEYAPKIIQTSIDPAKIGEVVGQRGKTINAIIDECGVKIDITDDGFVSVCGV 630 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A ++ A + I++I + E KIY+G+VV + +FGAFV F ++G+VHIS++S ER+ Sbjct: 631 EQAGMDKAMKYIKTIVEDFEEGKIYEGKVVSIKEFGAFVEFAPGKEGMVHISKISNERIN 690 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DV+ GD V K + D G+I S+K Sbjct: 691 HVEDVLTLGDHVKCKCMGKDKMGRISFSIK 720 >gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 922 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 292/751 (38%), Positives = 448/751 (59%), Gaps = 63/751 (8%) Query: 2 FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 F H +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL Sbjct: 84 FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQER AVG+ GG+ +RE R ++E+LI R+IDR +RP K + NETQ++ V+ + Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D +P +++ +A A+ LS +P + G +V I G++++NP + E ++ LDLF++ Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238 GT A+L +E +N L E+++L A+ G + + AI LAK K P ++D+ Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322 Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284 +L + + ++ E+L + I K R K I L++K+ V++ + E Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISPLEEKVLTILTEKGYVIDEVAFGTIEAQ 382 Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308 ++E ++ VF+++ +K++R ++ Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + R DGR + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502 Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + + F + Y F P + GEV R+GAPSRREIGHG LA RA+ +LP FPYT+R+ S Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481 + ES+GSSSMA+VCG LAL DAGVP+ VAGIAMG+V D ++F +ILSDI+G Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED G MDFKVAG + G+TA QMD+K+GGI+ IM AL QAK GR HIL EM+K Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600 L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI + + Sbjct: 683 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659 A +E A+ +I +T VP V IY+ +K M +GAFV R+GL HIS+LS E +AK Sbjct: 743 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 D K GD + VKL++ ++ G+++LS++ + Sbjct: 803 PEDAYKVGDRIDVKLIEVNEEGQLRLSVRAL 833 >gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] Length = 770 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 57 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 115 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 116 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 175 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V ING++V+NP D+ ++ +DL V T Sbjct: 176 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 235 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E N++SE +L+A+ H +CK +E ++ +E Sbjct: 236 ENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 285 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 286 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 345 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I ++G L HGS++F RG+TQ+ Sbjct: 346 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 405 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 406 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 465 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 466 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 523 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 524 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 583 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL+++++ ++E L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 584 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 643 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID+ G ++IA ++ IE A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 644 IEEIDNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 703 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 704 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 752 >gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus asiaticus 5a2] gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2] Length = 713 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/696 (41%), Positives = 437/696 (62%), Gaps = 20/696 (2%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R + +ETG++A+Q+DG+V+ G+T++LATVV+ + L DF PL V YQE+ A GKI Sbjct: 16 REITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAGKI 75 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PGG+LRRE + ++E+LISR++DR+IRPLF YK+ETQ+ I ++ D E P ++ +A Sbjct: 76 PGGFLRREGKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFLISADPEILPESLAGLA 135 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 ASAALM+S +PFEGP+ +V I+GQ+V+NP ++ +DL V G++ +LMVE E Sbjct: 136 ASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEKADIDLMVGGSEKNILMVEGEM 195 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247 +++ E ++ AI F H K + +LA A EP+ ++++F +L++ + Sbjct: 196 DEVQEADIIAAIQFAHEAIKLQCQVQKELADAVATLKFEAEPLQ-ETENF-ELKDRTFKA 253 Query: 248 IKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + + + + I K++R +KK+ + + + + +++ +VVR Sbjct: 254 LYDKVYATAKKGITNKHLRKSSFKQIKKEYLKELLQQDPETSTVHFDKYYYELEKQVVRD 313 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 + L++ +R+DGR + +R I +++ L HGSSLF RG+TQ++ VTLGT+ DEQ +D Sbjct: 314 LALNEGLRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDR 373 Query: 366 --LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 L+G R FM+HYNF +TGEV P RREIGHG LA RA+ VLP + PYT+ Sbjct: 374 ALLNGYSR--FMLHYNFPSFSTGEVKFNRGPGRREIGHGHLAMRALKKVLPLDTENPYTI 431 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481 RIVS+I ES+GSSSMATVC SLALMDAG+ I V+GIAMGL+ D ILSDI G Sbjct: 432 RIVSDILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTGKHAILSDILG 491 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DED LG MDFKVAGT GITA QMD+K+ G++ ++ AL+QAK GRLHIL EM+K ++E Sbjct: 492 DEDALGDMDFKVAGTAKGITACQMDIKVSGLTPQLLQKALEQAKAGRLHILGEMNKTITE 551 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASS 598 + + P M IP + I VIG GK+++ + +TG + I++ G +K Sbjct: 552 PKTTYKKHAPSFSTMTIPKNMIGAVIGPSGKIVQEMQRETGTTIIIEEVEGKGIIKFFGP 611 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + +++A + ++ I P V +Y+G V ++ FGAFV F ++GL+HIS++ ER+ Sbjct: 612 NQEAVQSAEKRVKDIVAEPVVGDVYQGTVKSIVPFGAFVEFMPGKEGLLHISEVKWERIE 671 Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693 V++ G+ + VKLL+ D + GK KLS KV+ N Sbjct: 672 NLDQVLELGEVIPVKLLEIDPKSGKYKLSRKVLLPN 707 >gi|306823630|ref|ZP_07457005.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] gi|304553337|gb|EFM41249.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] Length = 880 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 ++ E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ F PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+E+I SI + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|283455304|ref|YP_003359868.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium Bd1] gi|283101938|gb|ADB09044.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium Bd1] Length = 880 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 ++ E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ F PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+E+I SI + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] Length = 714 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V INGQ+V+NP ++ +Q +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ+ Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I D+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|310288093|ref|YP_003939352.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum S17] gi|309252030|gb|ADO53778.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum S17] Length = 887 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ D + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ KE ++ Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256 Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 KDF E + ++ EDL + I EK R +I ++K+ + ++E + + Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316 Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +AI PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGIA Sbjct: 437 LAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQA R IL+ +++ + + ++ E+ PR+ +P D+I +IG GK+I I E Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK FGAFV Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729 >gi|311064966|ref|YP_003971692.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum PRL2010] gi|310867286|gb|ADP36655.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum PRL2010] Length = 887 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ D + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ KE ++ Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256 Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 KDF E + ++ EDL + I EK R +I ++K+ + ++E + + Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316 Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +AI PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGIA Sbjct: 437 LAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQA R IL+ +++ + + ++ E+ PR+ +P D+I +IG GK+I I E Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK FGAFV Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729 >gi|87123698|ref|ZP_01079548.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9917] gi|86168267|gb|EAQ69524.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9917] Length = 691 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 286/673 (42%), Positives = 409/673 (60%), Gaps = 18/673 (2%) Query: 36 GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95 G+T VL T S ++G DF PL +Y+ER YA G+IPG ++RRE RP E LISR+I Sbjct: 5 GDTSVLVTATRS-SGREGIDFLPLICDYEERLYAAGRIPGSFMRREGRPPERATLISRLI 63 Query: 96 DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155 DR +RPLF +++ Q++ M D V+++ AS A +L+G+PF GP+ +V Sbjct: 64 DRPMRPLFPNWLRDDLQIVATCMSLDERVPADVLAVTGASMATLLAGIPFHGPMAAVRVG 123 Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214 + +VLNP E ++G LDL V+GT + V+MVE ANQL E V++AI FG+ + Sbjct: 124 LLGDDFVLNPSYREIERGDLDLVVAGTPEGVVMVEAGANQLPEQDVIEAIDFGYEAVCEL 183 Query: 215 IEAISKLAKMCAKEPIVI-----DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269 I+A ++ K E ++ D+ S LE++ S+ I E L+ F K R ++D Sbjct: 184 IKAQQEILKQAGIEQVIPPAPEPDATLPSYLEKQCSKSIGEVLK--HFEQSKAERDAKLD 241 Query: 270 DLKKKMVSYFSS--------EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321 ++ + S N + + F+ + K++R +L R+DGR + Sbjct: 242 AIRASTAETIQGLKEDDPVRQAVSANSKALPATFKALTKKLMRQQILKDGKRVDGRGLDE 301 Query: 322 VRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380 VR ISA G+L +R HGS LF RG TQ + TLGT D Q +D L+ + ++ HYNF Sbjct: 302 VRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTEKTYLHHYNF 361 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P + GE M +P RREIGHG LA RAI PVLP FPY +R+VSE+ S+GS+SM + Sbjct: 362 PPYSVGETKPMRSPGRREIGHGALAERAILPVLPAKDTFPYVVRVVSEVLSSNGSTSMGS 421 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 VCGS+LALMDAGVP+ PV+G AMGL+K+GD+ IL+DI G ED LG MDFKVAGTD GI Sbjct: 422 VCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTDKGI 481 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+QMDMKI G++ + + A+ QA+ RLHIL +M + + R L PR+ I P Sbjct: 482 TALQMDMKITGLAVSTVAEAVNQARPARLHILEKMMQAIDTPREGLSPHAPRLLSFRIDP 541 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 + I VIG GG+ I+GI E+T K++I+D G V IAS A + A+++I +T Sbjct: 542 ELIGTVIGPGGRTIKGITERTNTKIDIEDSGIVTIASHDGAAADEAQKIIEGLTRKVNEG 601 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 +++ G + +++ GAFV ++G++HISQLS RV K DVVK GD V V++ + D+R Sbjct: 602 EVFSGAITRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNR 661 Query: 681 GKIKLSMKVVDQN 693 G+I L+++ V QN Sbjct: 662 GRINLTLRGVPQN 674 >gi|224283646|ref|ZP_03646968.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium bifidum NCIMB 41171] gi|313140799|ref|ZP_07802992.1| PnpA [Bifidobacterium bifidum NCIMB 41171] gi|313133309|gb|EFR50926.1| PnpA [Bifidobacterium bifidum NCIMB 41171] Length = 887 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ D + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ KE ++ Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256 Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 KDF E + ++ EDL + I EK R +I ++K+ + ++E + + Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316 Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +AI PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGIA Sbjct: 437 LAEKAIVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQA R IL+ +++ + + ++ E+ PR+ +P D+I +IG GK+I I E Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK FGAFV Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729 >gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 9_1_42FAA] gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4] gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei 5_1_36/D4] gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 9_1_42FAA] Length = 711 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ + +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E ++SE +L A+ H CK +E + ++ +E Sbjct: 185 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ +R +C+ K+ R D ++ + + ++ E Sbjct: 235 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 295 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + R F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PYT+R+VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+K Sbjct: 415 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR HILN++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + Sbjct: 533 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 592 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPEV ++Y G+V VM +G FV F + Sbjct: 593 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701 >gi|288921719|ref|ZP_06415986.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia sp. EUN1f] gi|288346891|gb|EFC81201.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia sp. EUN1f] Length = 729 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 282/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+ARQ+ G+V+A G+T+VL+ RS K+ DFFPLTV+ +ER YA G+I Sbjct: 19 RTVRFETGRLARQAAGSVVAYLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ V+ D E+ VV++ A Sbjct: 79 PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPETLYDVVAINA 138 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ ML+GLPF GP+ +V +++G+++ P E ++ + D+ V+G + A++ Sbjct: 139 ASASTMLAGLPFSGPIGATRVGFVDGEWIAFPTHAELERATFDMVVAGRVLEDGSDVAIM 198 Query: 187 MVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PI 230 MVE EA +E+VV + + + A S+LA AK P+ Sbjct: 199 MVEAEATPGTVGLLAGGSPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAAKPQRDFPL 258 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 +D + + E ++ + E+L + I K R +++ ++ V S + ++ E Sbjct: 259 FVDYH--ADVLESLTAAVGEELAAALRIAGKAEREAELERVRVLAVEKVSGQFEGRDK-E 315 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I + + K+VR+ ++ VR+DGR + +R++SA+V + R HGS+LF RG+TQ + Sbjct: 316 IGPAYRALTKKLVRSRIVADGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILG 375 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 376 VTTLAMLRMEQTVDTLNPERTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+++G Sbjct: 436 PVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIQEG 495 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA+ RL Sbjct: 496 DAFVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAGALQQARAARLT 555 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M++ + ++ PRV + IP D+I VIG GK+I I +GA++ ++DD Sbjct: 556 ILEVMAEAIGAPD-EMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614 Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 GT+ I ++ E AR I +I + +PEV + Y G +VK+ +FGAFV +DGL+H Sbjct: 615 GTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674 Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +S+L +RV K DV+ G + V++ + D RGKI L+ Sbjct: 675 VSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISLA 716 >gi|86742236|ref|YP_482636.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. CcI3] gi|123764534|sp|Q2J735|PNP_FRASC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86569098|gb|ABD12907.1| Polyribonucleotide nucleotidyltransferase [Frankia sp. CcI3] Length = 729 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/702 (40%), Positives = 431/702 (61%), Gaps = 33/702 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+A+Q+ G+ +A G+T+VL+ + K+ DFFPLTV+ +ER YA G+I Sbjct: 19 RTVRFETGRLAKQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ V+ D ++ VV++ A Sbjct: 79 PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ LSGLPF GP+ +V +++G+++ P E + + D+ V+G + A++ Sbjct: 139 ASASTTLSGLPFTGPIGATRVGFVDGEWIAFPTHAELARATFDMVVAGRVIEDGSDVAIM 198 Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE----PI 230 MVE EA + +++ + + G KP I A S+LA + AK P+ Sbjct: 199 MVEAEATPGTVELLAHGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAALAAKPAREFPV 258 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 ID D + + +S I ++L + IP K R ++D +++ +S+ E E Sbjct: 259 FIDYHD--DVLDALSAAIGDELSAALRIPGKAERENELDRVRQLAAEKVASQFEG-REKE 315 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I + + + K+VR+ ++ + VR+DGR + +R +SA+V + R HGS+LF RG+TQ + Sbjct: 316 IGAAYRALTKKLVRSRIVTESVRIDGRSTTEIRALSAEVDYIPRVHGSALFERGETQILG 375 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 376 VTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+ Sbjct: 436 PVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIHAD 495 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA+ RL Sbjct: 496 DSYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAAALQQARGARLA 555 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+ M++ + S ++ PRV + IP D+I VIG GK+I I +GA++ ++DD Sbjct: 556 ILDVMAEAIG-SPDEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614 Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 GT+ I + E+AR I +I + +PEV + Y G +VK+ +FGAFV RDGL+H Sbjct: 615 GTIYIGAVDGPSAESARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDGLLH 674 Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +S+L T +RV K DV+ G + V++ + D RGKI LS Sbjct: 675 VSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDSRGKISLS 716 >gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084] gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084] Length = 743 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 292/704 (41%), Positives = 431/704 (61%), Gaps = 42/704 (5%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T E + G+ LETG +A+Q+ G L + GE+ V TVV + K+ DFFPLTV++ E Sbjct: 5 THEFDLFGKHYTLETGELAKQATGECLVSCGESTVNVTVVVSKERKN-YDFFPLTVDFVE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RE+RP+E L +R+IDR IRP F + ++NE Q++ + D + Sbjct: 64 KMYAVGRIPGGYLKREARPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQVNP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 +S++ ASAA+ + G+PFEGP+ +V D G++++NP +E D LDL ++G+ Sbjct: 124 VDTISVMGASAAMTVGGVPFEGPLACVRVGRDVETGEFIVNPSYEERDASDLDLELAGSA 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + M+E A ++SED +L A+ FG EAI A C ++ + F+K+E+ Sbjct: 184 TFISMLEAGAKEVSEDDMLAAMAFGQ-------EAI---AAFCEEQRVF-----FAKVEQ 228 Query: 243 EMSQMIKEDLRVSCFIPE--------------------KYVRCKQIDDLKKKMVSYFSS- 281 ++ + + +PE K R +++ LK+ + + FS Sbjct: 229 ANGSIVAREYVLDEPVPEVHERVFAHFDEMRAALTDADKLARMGKVEALKEAIRAEFSED 288 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 E W+ I + ++ +R ++++ R+DGR + VR + + L R HGS LF Sbjct: 289 EQLQWDRA-IPVELKSLEKHAMRRMVVECGERVDGRSATEVRPLMVKPDYLPRVHGSGLF 347 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG TQ + + TLG + Q +D++ ++ HYNF P TGE RMGAP RREIGH Sbjct: 348 QRGQTQVLSIATLGMLNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGAPKRREIGH 407 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PV+P +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+++PV+G Sbjct: 408 GSLAERALLPVIPSEDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLARPVSG 467 Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 +AMGL+++ ++L+DI G ED LG MDFKV GT GITAMQMD K G++ I+ AL Sbjct: 468 VAMGLIQEEGKTVVLTDIQGLEDFLGDMDFKVCGTVKGITAMQMDNKATGLTPEILRQAL 527 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 QA GR+HIL M + + R E P++ + IP D+IR+VIG GGKVIRGI + T Sbjct: 528 MQAHEGRMHILEAMLEQIPAPRESTKESAPQIISIQIPTDKIRDVIGSGGKVIRGIQDDT 587 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 GA ++I +DGTV IA + A EA+ E I++I VPE + Y G+VV + FGAFV Sbjct: 588 GATIDIQEDGTVFIAGTGGAAGEAS-ERIKAIVKVPEAGEEYTGRVVGIQPFGAFVELLP 646 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS+++ RV K DV+ GD V V++++ D++GKI L Sbjct: 647 GKDGLLHISRVAQGRVDKVEDVLSIGDEVKVRVIEVDEKGKISL 690 >gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_33FAA] gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_33FAA] Length = 728 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 23 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 82 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ + +DL V+ T Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 201 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E ++SE +L A+ H CK +E + ++ +E Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ +R +C+ K+ R D ++ + + ++ E Sbjct: 252 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 312 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + R F++HYNF P +TGE RREIGHG LA RA Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PYT+R+VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+K Sbjct: 432 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR HILN++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPEV ++Y G+V VM +G FV F + Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718 >gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] Length = 714 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V INGQ+V+NP ++ +Q +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ+ Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I D+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 716 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V ING++V+NP D+ ++ +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E N++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I ++G L HGS++F RG+TQ+ Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NTGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL+++++ ++E L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID+ G ++IA ++ IE A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEIDNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL1A] gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. NATL1A] Length = 722 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 293/707 (41%), Positives = 420/707 (59%), Gaps = 20/707 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T + + GR +KL TGR A Q+ G+V+ G+T VL T S ++G DF PL +Y+ Sbjct: 4 QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +++G+PF+GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDF 237 V+MVE ANQLSE V++AI FG+ +I A ++ K K P ID Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAP-EIDDTIS 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEG 289 + L++ ++ I E L+ F K R +I+++K + + + S N Sbjct: 242 TYLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNK 299 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348 + + ++ + K++R ++ + R+DGR+ VR I A +L R HGS+LF RG TQ Sbjct: 300 LLENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQV 359 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + TLGT D Q +D L+ ++ HYNF P + GE M P RRE+GHG LA RA Sbjct: 360 LSTATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERA 419 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP FPY LR+VSE+ S+GS+SMA+VCGS+LALMDAGVP+ PV G AMGL+K Sbjct: 420 LIPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIK 479 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G + IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ + A+ QA R Sbjct: 480 EGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPAR 539 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 HIL +M + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+ Sbjct: 540 THILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIE 599 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D G V IAS A E A+ +I +T +I+ G + +++ GAFV ++G++H Sbjct: 600 DGGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIH 659 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ISQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN G Sbjct: 660 ISQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706 >gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL2A] gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A] Length = 722 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 293/707 (41%), Positives = 420/707 (59%), Gaps = 20/707 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T + + GR +KL TGR A Q+ G+V+ G+T VL T S ++G DF PL +Y+ Sbjct: 4 QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG ++RRE RP E LISR+IDR +RPLF +++ Q++ + D Sbjct: 63 ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +++G+PF+GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDF 237 V+MVE ANQLSE V++AI FG+ +I A ++ K K P ID Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAP-EIDDTIS 241 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEG 289 + L++ ++ I E L+ F K R +I+++K + + + S N Sbjct: 242 TYLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNK 299 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348 + + ++ + K++R ++ + R+DGR+ VR I A +L R HGS+LF RG TQ Sbjct: 300 LLENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQV 359 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + TLGT D Q +D L+ ++ HYNF P + GE M P RRE+GHG LA RA Sbjct: 360 LSTATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERA 419 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP FPY LR+VSE+ S+GS+SMA+VCGS+LALMDAGVP+ PV G AMGL+K Sbjct: 420 LIPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIK 479 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 +G + IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+ + A+ QA R Sbjct: 480 EGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPAR 539 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 HIL +M + + L PR+ I P+ I VIG GG+ I+GI E+T K++I+ Sbjct: 540 THILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIE 599 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D G V IAS A E A+ +I +T +I+ G + +++ GAFV ++G++H Sbjct: 600 DGGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIH 659 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ISQLS RV K DVVK GD V V++ + D+RG+I L+++ V QN G Sbjct: 660 ISQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706 >gi|111225112|ref|YP_715906.1| polynucleotide phosphorylase/polyadenylase [Frankia alni ACN14a] gi|123142666|sp|Q0RDT1|PNP_FRAAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|111152644|emb|CAJ64385.1| polynucleotide phosphorylase, has polyadenylase activity [Frankia alni ACN14a] Length = 729 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/703 (40%), Positives = 430/703 (61%), Gaps = 34/703 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+ARQ+ G+ +A G+T+VL+ + K+ DFFPLTV+ +ER YA G+I Sbjct: 19 RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ V+ D ++ VV++ A Sbjct: 79 PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ LSGLPF GP+ +V Y++G+++ P E + + D+ V+G + A++ Sbjct: 139 ASASTTLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARATFDMVVAGRVVEDGSDVAIM 198 Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE-----P 229 MVE EA + +++ + + G KP I A S+LA + K P Sbjct: 199 MVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELASLAGKAATREFP 258 Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 + ID D + E +S + ++L + I K R ++D +++ +++ E Sbjct: 259 VFIDHHD--DVLEALSAAVGDELSAALRIAGKSERENELDRVRQLAAEKVAAQFEG-REK 315 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI + + + K+VR+ ++ + VR+DGR + +R++SA+V + R HGS+LF RG+TQ + Sbjct: 316 EIGAAYRALTKKLVRSRIVTEGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQIL 375 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 376 GVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERAL 435 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGLV Sbjct: 436 LPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVHA 495 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA+ RL Sbjct: 496 DDAYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLASALQQARGARL 555 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL+ M++ + S ++ PRV + IP D+I VIG GK+I I +GA++ ++D Sbjct: 556 AILDVMAEAIG-SPDEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVED 614 Query: 590 DGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 DGT+ I ++ E AR I +I + +PEV + Y G +VK+ +FGAFV RDGL+ Sbjct: 615 DGTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDGLL 674 Query: 648 HISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 H+S+L T +RV K DV+ G + V++ + D RGKI LS Sbjct: 675 HVSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDARGKISLS 717 >gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis DSM 18011] gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis DSM 18011] Length = 713 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/706 (40%), Positives = 438/706 (62%), Gaps = 28/706 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DGAV+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ RRE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFSAFGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V +G++++NP ++ ++ +D+ V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKADMDIMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK IE + +E + Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQIELAEAVGSTVKRE------YNHE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + +E++ + + E + K+ R + +K++ + F+ E E I Sbjct: 239 ENDEDLRKAVHEACYEKAYAVAASGNANKHERFDAFEAIKEEFKAQFTEEELEEKEALIN 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + VR I ++V L HGS++F RG+TQA+ V Sbjct: 299 KYYHDVEKEAMRRSILDEGKRLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RRE+GHG LA RA+ + Sbjct: 359 TLGTKSDEKIIDDVLCHGKERFLLHYNFPPFSTGEARPQRGVGRREVGHGNLAHRALKRM 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P+ +PY +R++S+I ES+GSSSMATVCG +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IPE--NYPYVIRVISDILESNGSSSMATVCGGTLALMDAGVQIKKPVSGIAMGLIKNPGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S +I+ AL QAK GR+H Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSFDILEKALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589 IL+++ + L R L PR+E M IP + I +IG GGK+I+ + E+TGA + I++ Sbjct: 537 ILDKILETLDAPRTDLKPHAPRIEKMTIPKEFIGAIIGPGGKIIQNMQEETGATITIEET 596 Query: 590 ---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 +G+++I++++ I+ A MI++I VPEV ++Y G+V +M +GAF+ F +DGL Sbjct: 597 EAGEGSIEISATNKKSIDDAVRMIKAIVAVPEVGEVYTGKVRSIMPYGAFIEFLPGKDGL 656 Query: 647 VHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +HIS++ R+ K D + E D + VKL+D D + GK KLS KV+ Sbjct: 657 LHISEIEWRRLDKVEDAGIHENDEIEVKLIDIDRKTGKFKLSHKVL 702 >gi|229827407|ref|ZP_04453476.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC 49176] gi|229788345|gb|EEP24459.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC 49176] Length = 697 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/692 (40%), Positives = 418/692 (60%), Gaps = 15/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ R+A+Q++GA L YG+TVVL+T ++G DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDVDRVAKQANGAALMHYGDTVVLSTCTASEKPREGIDFFPLSVEYEEKQY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+ + VM D SP + Sbjct: 67 AVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPTCSPEL 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +M+ ++ A +S +PF+GP QV I+G++V+NP E S L L V+ T++ V+M Sbjct: 127 TAMLGSAIATAISDVPFDGPCATTQVGLIDGEFVINPSNAEMANSALKLTVASTKEKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E A+++ E +++AI H + +I I K+ C K + + EE+ Sbjct: 187 IEAGADEIPEAKMIEAIYKAHEVNQEIIVFIEKIVAECGKPK---SEYERYAVPEELFTA 243 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 IKE ++ + F EK +R + I + K+ +F +E+ W +V++ Q K Sbjct: 244 IKEIVTPDEMEKAVFTDEKQIREENISAIMDKLTEHF-AENEEWLSFLPDAVYQ-YQKKT 301 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR ++L R DGR+ +R ++A+ ++ R HGS++F RG TQ + TL + Q Sbjct: 302 VRKMILKDYKRPDGREMTQIRALAAETDIIPRVHGSAMFTRGQTQICNITTLAPLSEVQK 361 Query: 363 VDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VD L+ + ++ HYNF + GE P RREIGHG LA RA+ PVLP +FPY Sbjct: 362 VDGLNAEETYKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPY 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479 +R VSE ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV DD+++L+DI Sbjct: 422 AIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTDDDYVLLTDI 481 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538 G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + K R+ I++ M Sbjct: 482 QGLEDFFGDMDFKVTGTTDGITAIQMDIKIHGLTREIVEGAIARTKEARMFIMDTCMKPA 541 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 ++E R + E+ P++E + I PD+I V+G GK I I+++TG K++I D+G V I + Sbjct: 542 IAEPRASVNEYAPKIEQIKIDPDKIGEVVGQKGKTINAIIDKTGVKIDITDEGNVSICGT 601 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 + +I A+E+IR I E KIY G+V+ + +FGAFV F ++G+VHIS+++ ER+ Sbjct: 602 DIDKINEAKEIIRMIVTEFEEGKIYTGKVISIKEFGAFVEFAPGKEGMVHISKVAKERIN 661 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ GD V L D G+I S+K V Sbjct: 662 NVEDVLTLGDIVKTICLGKDKMGRISFSIKDV 693 >gi|124006215|ref|ZP_01691050.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC 23134] gi|123988139|gb|EAY27797.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC 23134] Length = 712 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 300/705 (42%), Positives = 444/705 (62%), Gaps = 24/705 (3%) Query: 4 VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 V T EI A GR + LETG++ARQ++G+V+ T G+T++LATVV + KD DF PL+V+ Sbjct: 5 VITKEIVLADGRKITLETGKLARQANGSVVVTMGQTMLLATVVSQKEAKDDVDFLPLSVD 64 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 +QER A GK+PGG+L+RE R + EIL R++DR++RPLF Y +TQ+ I ++ D Sbjct: 65 FQERFAAAGKVPGGFLKREGRLSNYEILTCRLVDRAMRPLFPGDYHADTQINIFLISSDP 124 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 E ++ +AAS+A+ +S +PF GP +V +NG++V+NP ++ ++ LD+ ++ T Sbjct: 125 EVPADALAALAASSAVSVSDIPFNGPTAEVRVARVNGEFVINPSVEAIEEADLDIMLAAT 184 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKL 240 D+VLMVE E ++SE +LDAI FGH K + +A +L A+ A E D K Sbjct: 185 LDSVLMVEGEMQEVSEQDMLDAIRFGHEVIKTLCQAQKELEAEAGATEK---REYDHEKH 241 Query: 241 EEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 + E+ Q + ++L + I K R + + +K + + +H + + Sbjct: 242 DPELEQRLYDELYEKAYKVAQQQISNKSERSEAFNVIKDEFIDSLPEDHE-VDLYLVKQY 300 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + I+ K R + L + R+DGRD +R I +V L THGS+LF RG+TQ++ +TL Sbjct: 301 YGKIKKKACRDLALKDRKRIDGRDFSEIRPIWGEVNYLPATHGSALFTRGETQSLTTLTL 360 Query: 355 GTREDEQYVD--SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 GT+ DE ++D + GTQ+ FM+HYNF +TGEV SRREIGHG LA RA+ + Sbjct: 361 GTKLDELFIDNATFKGTQK--FMLHYNFPGFSTGEVKPNRGASRREIGHGNLAYRALKGM 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 LP+ PYT+RIVS+I ES+GSSSMATVC ++ALMD G+ I PV+GIAMGL+ D D Sbjct: 419 LPKDEDNPYTIRIVSDIMESNGSSSMATVCAGTMALMDGGISIKAPVSGIAMGLISDESD 478 Query: 473 ---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S +I+ AL QA+ GRL Sbjct: 479 PENYAVLSDILGDEDHLGDMDFKVTGTRDGITACQMDIKMEGLSYDILTKALAQAREGRL 538 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI-- 587 HIL+++ +++ + L PR + I D I VIG GGK+++ I +++GA V I Sbjct: 539 HILDKIEEIIPSTNSDLKPHAPRSTTVVIEKDMIGAVIGPGGKIVQLIQKESGATVVIEE 598 Query: 588 -DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 D+ G V I ++ ++ A EM++ I VP V ++Y+G+V +M FGAFV F ++GL Sbjct: 599 KDEHGHVNIFANDRESMDKAHEMVKQIIAVPTVGEVYEGKVKSIMPFGAFVEFLPGKEGL 658 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +HIS++ ER+ K V++ G+ + VKL+D D R GK +LS K + Sbjct: 659 LHISEIKWERIEKMDGVLESGEEITVKLIDVDKRSGKYRLSRKAL 703 >gi|119025278|ref|YP_909123.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium adolescentis ATCC 15703] gi|154486675|ref|ZP_02028082.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis L2-32] gi|187470939|sp|A1A008|PNP_BIFAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118764862|dbj|BAF39041.1| polynucleotide nucleotidyl transferase [Bifidobacterium adolescentis ATCC 15703] gi|154084538|gb|EDN83583.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis L2-32] Length = 892 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 301/726 (41%), Positives = 437/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + VV Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 EDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ + PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E TGA++ I+DDGTV I+S E A+E+I I + VPE + Y G+VVK FGAF Sbjct: 615 EDTGAEIAIEDDGTVYISSEGGEAAEKAKEIIDQIANPHVPEAGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides distasonis ATCC 8503] gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7] gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] Length = 746 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/696 (41%), Positives = 435/696 (62%), Gaps = 26/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV TV+LATV + G DF PL V Y+E+ A G+ Sbjct: 14 GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL SR++DR++RPLF Y E V I + D E P ++ + Sbjct: 74 FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V +G+Y++NP E ++ +D+ V+ T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++ E +L+AI H K +A +L++ C K + +++ E +++D Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247 Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301 + C+ K+ R + + + ++ + FS E + + E++ + D++ + Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479 +R++S+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL+ + G ++ ILSDI Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL ++ + Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596 E+R L PR+E M I + I VIG GGK+I+GI E+TGA V+ID+ G ++I+ Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A I+AA + I++I VPE+ ++Y+G++ +M +GAFV F +DGL+HIS++ +R Sbjct: 606 GTNKATIDAAVKAIKAIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665 Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGDTV VKL+D D + GK KLS KV+ Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701 >gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium cellulosolvens 6] gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium cellulosolvens 6] Length = 715 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/696 (39%), Positives = 418/696 (60%), Gaps = 15/696 (2%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 + T +E AGR L ++ GR+ +Q++G YG+T +L T + ++G DFFPL+V Sbjct: 14 NYKTYSMELAGRTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVE 73 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 ++E+ YAVGK PGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+ + VM D Sbjct: 74 FEEKMYAVGKFPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDP 133 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181 P VV+M+ +S A +S +PF+GP Q+ I+G++V+NP ++ + +L L V+ T Sbjct: 134 ACDPEVVAMLGSSLATAISDIPFDGPCAATQIGMIDGEFVINPGYEQKAESTLALTVAST 193 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241 ++ V+M+E A ++ E +++AI K VI ++ C KE S + + Sbjct: 194 REKVIMIEAGAEEIPEAKMIEAIYLADETNKKVIAFFDQIVAECGKEK---HSYESCAIP 250 Query: 242 EEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 EE+ IKE ++ V+ F EK VR I + +K+ F +++ W +V++ Sbjct: 251 EELFAAIKEIVPPAEMEVAVFTDEKQVREANIAAVTEKLQEAF-ADNEEWLAILPEAVYQ 309 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 Q K VR ++L + R DGR +R ++A+V ++ HGS++F RG TQ V+TL Sbjct: 310 -YQKKTVRKMILKDQKRPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAP 368 Query: 357 REDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q V+ L + +M YNF + GE P RREIGHG LA RA+ PVLP Sbjct: 369 LSEAQKVEGLDPFITKKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPT 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDF 473 +FPY +R VSE ES+GS+S A+VC SS+ALM AGVPI KPVAGI+ GLV DD+ Sbjct: 429 EEEFPYAIRAVSETFESNGSTSQASVCASSMALMAAGVPIKKPVAGISCGLVTGDTDDDY 488 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ++L+DI G ED G MDFKVAGT GITA+QMD+KI G++ I+ A+ + K R +IL Sbjct: 489 LVLTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAISRCKDAREYILT 548 Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 E M K ++ R + E+ P++E M I PD+I V+G GK I I+ +TG K++IDDDGT Sbjct: 549 EVMEKAIAAPRESVNEYAPKIESMKIDPDKIGEVVGKQGKTINEIIARTGVKIDIDDDGT 608 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V + + A+++ A + I IT E ++ KG VV + +FGAFV F ++G+VHIS++ Sbjct: 609 VSVCGTDRAKMDEAEKYIEIITMNFEEGQVLKGTVVSIKEFGAFVEFAPGKEGMVHISKI 668 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + ER+ D++ GD V V L D G++ S+K Sbjct: 669 AKERINHVEDILTLGDVVKVVCLGKDRMGRLSFSIK 704 >gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM 18228] gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM 18228] Length = 719 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DGAV+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 REKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP + ++ +D+ V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E ++SE +L A+ F H CK +E + ++ K +E Sbjct: 185 ENIMMVEGEMKEVSEQDLLAAMKFAHEAIKVHCKAQMELMEEVGKTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCFI----------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ + +C+ K+ R + + + + F+ E Sbjct: 235 YCHEENDEELRKAVHDACYAKAYAIAESGNKNKHEREDAFNAICDEFKAQFTEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +V L HGSS+F RG+TQ+ Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P+ +PY +R+VS+I ES+GSSSMATVC +LALMDAGVPI KPV+GIAMGL+K Sbjct: 415 LKGQIPE--NYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT GITA QMD+K G++ +I+ AL QAK+ Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALLQAKQ 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILGKLTECIAEPRADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I D G ++IA ++ I+ A +I+ I VPEV ++Y G+V +M +GAFV F + Sbjct: 593 IEEVDGVGRIEIAGTNKKCIDDAVRLIKGIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETIEEANLKEGDEIEVKLMDIDPKTGKFKLSHKVL 701 >gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855] gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855] Length = 728 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 23 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 82 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ + +DL V+ T Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 201 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 D ++MVE E ++SE +L A+ H CK +E + ++ +E Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251 Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ +R +C+ K+ R D ++ + + ++ E Sbjct: 252 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ+ Sbjct: 312 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + R F++HYNF P +TGE RREIGHG LA RA Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P +PYT+R+VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+K Sbjct: 432 LKGQIP--TGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR HILN++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609 Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I++ G ++IA ++ I+ A +I+ I VPEV ++Y G+V VM +G FV F + Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718 >gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] Length = 714 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/709 (40%), Positives = 433/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V INGQ+V+NP ++ +Q +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ+ Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--VNYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I D+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] Length = 746 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/696 (41%), Positives = 434/696 (62%), Gaps = 26/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV TV+LATV + G DF PL V Y+E+ A G+ Sbjct: 14 GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL SR++DR++RPLF Y E V I + D E P ++ + Sbjct: 74 FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V +G+Y++NP E ++ +D+ V+ T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++ E +L+AI H K +A +L++ C K + +++ E +++D Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247 Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301 + C+ K+ R + + + ++ + FS E + + E++ + D++ + Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479 +R++S+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL+ + G ++ ILSDI Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL ++ + Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596 E+R L PR+E M I + I VIG GGK+I+GI E+TGA V+ID+ G ++I+ Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A I+AA + I+ I VPE+ ++Y+G++ +M +GAFV F +DGL+HIS++ +R Sbjct: 606 GTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665 Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGDTV VKL+D D + GK KLS KV+ Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701 >gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] Length = 746 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/696 (41%), Positives = 434/696 (62%), Gaps = 26/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV TV+LATV + G DF PL V Y+E+ A G+ Sbjct: 14 GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL SR++DR++RPLF Y E V I + D E P ++ + Sbjct: 74 FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V +G+Y++NP E ++ +D+ V+ T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++ E +L+AI H K +A +L++ C K + +++ E +++D Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247 Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301 + C+ K+ R + + + ++ + FS E + + E++ + D++ + Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479 +R++S+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL+ + G ++ ILSDI Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL ++ + Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596 E+R L PR+E M I + I VIG GGK+I+GI E+TGA V+ID+ G ++I+ Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ A I+AA + I+ I VPE+ ++Y+G++ +M +GAFV F +DGL+HIS++ +R Sbjct: 606 GTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665 Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGDTV VKL+D D + GK KLS KV+ Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701 >gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] Length = 737 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 282/699 (40%), Positives = 430/699 (61%), Gaps = 33/699 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +K+ETG++A+Q+DGAV T G TV+LATV DF PL V+Y+E+ AVG+ Sbjct: 14 GRTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPLQVDYKEKYSAVGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE + ++ EIL SR++DR++RPLF Y E V I + D P ++ + Sbjct: 74 FPGGFTRREGKASDYEILTSRLVDRALRPLFPADYHAEVFVNITLFSADGVDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AAS+AL +S +PFEGP+ +V ING++++NP ++ +D+ V+ T D ++MVE E Sbjct: 134 AASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQVANADIDMMVAATIDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +++ E +L+AI H +C+ +E + K+ + + EE Sbjct: 194 MDEVQEADMLEAIKVAHEAIKKQCQAQLELSEAVGKLVKR----------TYCHEENDDA 243 Query: 248 IKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +++D+ C+ K R + L ++ + FS E + + I + D+ Sbjct: 244 LRQDVHDKCYAKAYAIATSGTSKQERTASFEALIEEYKAQFSEEDLAAKKSMIARYYHDV 303 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ Sbjct: 304 EKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKA 363 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD + + F++HYNF P +TGE A RREIGHG LA RA+ ++P + Sbjct: 364 DEKLVDDVLCRCKERFLLHYNFPPFSTGEARPQRATGRREIGHGNLAFRALKRMIPD--E 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476 +PY +R++S+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+ + G ++ +L Sbjct: 422 YPYVVRVISDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGTNYAVL 481 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QA+ GR+HIL ++ Sbjct: 482 SDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALAQAREGRMHILGKIE 541 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTV 593 + + R L PR+E + +P + I +IG GGK+I+GI E++GA V+ ID +G V Sbjct: 542 EAMPSVRPDLKPQAPRIEKLRVPKEFIGAIIGPGGKIIQGIQEKSGAVVSIEEIDGEGHV 601 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 +I+S++ ++AA M+R I +PEV ++Y G+V VM +G FV F ++GL+HIS++ Sbjct: 602 EISSANKESLDAALAMVRGIVAMPEVGEVYDGKVTSVMPYGCFVEFLPGKEGLLHISEIE 661 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 R K D + EGD + ++LL+ D + GK KLS +V+ Sbjct: 662 WRRFEKIEDTNLHEGDNIRIQLLEIDPKTGKFKLSHRVL 700 >gi|302670339|ref|YP_003830299.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio proteoclasticus B316] gi|302394812|gb|ADL33717.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio proteoclasticus B316] Length = 696 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 284/704 (40%), Positives = 417/704 (59%), Gaps = 23/704 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T +E AGR LK+E G++ +Q++G YG+T VL T +DG DFFPL+V Y Sbjct: 2 VKTYSMELAGRTLKVEIGKVGKQANGCAFMQYGDTTVLCTATASAKPRDGIDFFPLSVEY 61 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 E+ YAVGK PGGY +RE +P+EN IL SR+IDR +RPLF K Y+N+ + VM D + Sbjct: 62 GEKFYAVGKFPGGYNKREGKPSENAILTSRVIDRPMRPLFPKDYRNDVTIETMVMAVDPQ 121 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P +V+M+ AS ++ +S +PF+GP Q+ I+G+ ++NP ++ + G L L V+ Sbjct: 122 CRPELVAMLGASVSVSISDIPFDGPCAMTQIGMIDGELIVNPTQEQWNTGDLKLTVASVG 181 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 V+M+E AN++ E+ + +AI H+ +IE + K S + E Sbjct: 182 QKVIMIEAGANEIPEEKMKEAIYKAHDVNLQIIEFFKGIVAEVGKPKHEYTS---CAVPE 238 Query: 243 EMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295 E+ IK E++ + F +K R I D+ ++ F +++ W GE + + Sbjct: 239 ELFAAIKEVVPPEEMEKAVFTDDKQTREANIADITDRLTEKF-ADNEEWLAILGEAIYQY 297 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E K VR ++L R DGR+ + +R +SA+V L+ R HGS++F RG TQ VVTL Sbjct: 298 E---KKTVRKMILKDHKRPDGREIKQIRPLSAEVDLIPRVHGSAMFTRGQTQICDVVTLA 354 Query: 356 TREDEQYV---DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 + Q V DS + +R ++ YNF + GE P RREIGHG LA RA+ PV Sbjct: 355 PLSEAQKVEGLDSFAADKR--YVHQYNFPAYSVGETKVSRGPGRREIGHGALAERALLPV 412 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DG 470 LP +FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV Sbjct: 413 LPSVEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTD 472 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 DDF++L+DI G ED G MDFKV GT GITA+QMD+KI G+++ I+ A+ Q + R Sbjct: 473 DDFVVLTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTKPIVETAIAQCREARFF 532 Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 I++E MSK ++E R ++ ++ P++ + I P++I +V+G GK I I+ +TG K++I D Sbjct: 533 IMDECMSKAIAEPRKEVSKYAPKIVSIQIDPEKIGDVVGQRGKTINEIIARTGVKIDITD 592 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 DG V + +I A M+ I E +++ G+VV + +FGAFV F ++G+VHI Sbjct: 593 DGKVSVCGEDQDKINEAVNMVNIIVSDFEKGQVFTGKVVSIKEFGAFVEFAPGKEGMVHI 652 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S++S ER+ DV+ GDTV V L D G+I SMK V QN Sbjct: 653 SKISRERIEHVEDVLTLGDTVTVVCLGKDKMGRISFSMKDVAQN 696 >gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] Length = 714 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 289/705 (40%), Positives = 433/705 (61%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP ++ ++ +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKREYC------HE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +EE+ + + + + K+ R D ++++ + FS E I Sbjct: 239 VNDEELRKAVHDACYEKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR + Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587 IL ++++ L+E R L PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILGKITECLAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F +DGL+ Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|291456054|ref|ZP_06595444.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve DSM 20213] gi|291382463|gb|EFE89981.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve DSM 20213] Length = 949 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 297/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 65 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 124 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 125 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 184 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 185 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 244 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 245 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAAGLEAAKPFIKVICEAQDELKKIAAKE-- 302 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 303 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 359 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 360 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 419 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 420 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 479 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 480 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 539 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 540 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 599 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ +P ++I VIG GK+I Sbjct: 600 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 658 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S E A+ +I SI + VPE + Y G+VVK F Sbjct: 659 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 718 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 719 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 776 >gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 8102] gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8102] Length = 721 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 293/704 (41%), Positives = 419/704 (59%), Gaps = 18/704 (2%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T I + GR ++L TGR A Q+ G+VL G+T VL T ++G DF PL +Y+ Sbjct: 4 QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG Y RRE RP E L +R+IDR +RPLF +++ QV+ + D Sbjct: 63 ERLYAAGRIPGSYQRREGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERV 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AS A +L+G+PF GP+ +V + +VLNP E ++G LDL V+GT D Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLIVAGTPD 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238 V+MVE NQL E V++AI FG+ +I+A +L K E D+ + Sbjct: 183 GVVMVEAGGNQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGIEQVKPETPTQDTTVPA 242 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGE 290 LE++ ++ I E L+ F K R K +D +K + + ++ N Sbjct: 243 YLEKQCTKAISEVLKK--FDQTKDERDKALDAIKAEAAEAIAGLKEDDAIRVATASNSKL 300 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349 + + F+ + ++R +L R+DGR + VR ISA G+L +R HGS LF RG TQ + Sbjct: 301 LGNSFKALTKTLMRQQILKDGKRVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVL 360 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L + ++ HYNF P + GE M +P RREIGHG LA RAI Sbjct: 361 STATLGTPSDAQEMDDLHPSTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP FPY +R+VSE+ S+GS+SM +VCGS+L+LMDAGVP+ PV+G AMGL+K+ Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 GDD IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+ + A+ QA+ RL Sbjct: 481 GDDIRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKTIAEAINQARPARL 540 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 HIL +M + + R L PR+ I P+ I VIG GG+ I+GI E+T K++I+D Sbjct: 541 HILEKMLEAIDTPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V IAS A + A+++I +T +++ G + +++ GAFV ++G++HI Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SQLS RV K DVVK GD V V++ + D+RG+I L+++ V Q+ Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704 >gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] Length = 716 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V ING++V+NP ++ ++ +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I ++G L HGS++F RG+TQ+ Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL+++++ ++E L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 533 GREYILSKITECIAEPHADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 593 IEEIDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701 >gi|229818418|ref|ZP_04448699.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM 20098] gi|229784288|gb|EEP20402.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM 20098] Length = 893 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 294/714 (41%), Positives = 434/714 (60%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + T++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ ++ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPQDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V P D+ ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPTWDQRERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ KE ++ Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICE-AQNELKEKAAKET 256 Query: 235 KDFS-------KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 K+F +L + ++ +DL + I EK R +I ++K+ + + ++E + Sbjct: 257 KEFQLFPEYTDELYSRIDEIAHKDLDEALTIAEKLPRQDRIKEIKEGVKATLANEFEDMD 316 Query: 288 EGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E I + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 317 DAEKDKEIGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSLSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 377 GETQILGVTTLNMLKMEQQLDSLSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGIA Sbjct: 437 LAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 497 MGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAA 556 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQAK R IL +++ + + ++ EF PR+ +P D+I VIG GK+I I E Sbjct: 557 ALQQAKEARTTILEVINECI-DGPSEMSEFAPRIITTTVPVDKIGEVIGPKGKMINQIQE 615 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGTV I+S E A+++I I + VPE + Y G+VVK FGAFV Sbjct: 616 DTGAEIAIEDDGTVYISSEGGEAAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + ER+ DV++EGDTV V + DDRGKI L++ Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLQEGDTVEVVVQGVDDRGKISLAI 729 >gi|212716682|ref|ZP_03324810.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM 16992] gi|212660386|gb|EEB20961.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM 16992] Length = 893 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 299/726 (41%), Positives = 438/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ ++SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTLISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L + AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQTELKNIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315 Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E EI + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ + PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+++I I + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] Length = 704 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/690 (40%), Positives = 424/690 (61%), Gaps = 36/690 (5%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +ETG A+Q+DGAV+ G+T VL T V + DF PLTV+Y+E++ A GKIP Sbjct: 13 PIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAWGKIP 72 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GG+++RE +PT+ EIL+SR+IDR IRPLF + + ++ V + D + P V+++ A Sbjct: 73 GGFIKREGKPTDREILVSRVIDRPIRPLFPEGFSHDVVVTALTLSADDKYDPDVLAITGA 132 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN 193 SAAL +S +PFEGP+ G ++ + G+ V NP +E Q + L++ ++G++DA++MVE A Sbjct: 133 SAALHISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADLEIVMAGSKDAIVMVEGGAK 192 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLEEEMSQMI 248 ++ E+V+ +A+ FG + ++ A +L + D ++L E S I Sbjct: 193 EVDEEVLTEALYFGLEVIQDLLRAQEELRDKIGQPKASFQGLDLPEEIQNQLVEFCSPRI 252 Query: 249 KEDLRVS---------CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 KE ++ + E++++ QI + K VSY ++ + Sbjct: 253 KESFQIQDKRERKSFQSKVLEEFLQTYQIPEELKFRVSY---------------QYKKLI 297 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +K++R ++L++ R+DGR + +R I+ ++ +R HGS++F RG TQA VTLG E+ Sbjct: 298 SKLMRKMVLEEGRRIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEE 357 Query: 360 EQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q V+S+ G FM+HYNF P +TGE G P RREIGHG LA RA+ P++P + Sbjct: 358 AQMVESIYEGEVFKRFMLHYNFPPFSTGEARSWGPPRRREIGHGALAERALEPLIPPEEE 417 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPY +R+VS I ES+GS+SMATVC +SLAL DAGVP+ K AGIAMGL+ +GD ++ILSD Sbjct: 418 FPYIIRVVSNILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVILSD 477 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I GDED LG MDFKVAGT GIT++QMD+K+ G+ + IM ALQQAK GRL+IL +M + Sbjct: 478 ILGDEDQLGDMDFKVAGTKDGITSVQMDIKVKGLKKEIMREALQQAKEGRLYILQKMYEA 537 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + E R Q+ + P +EI+ IP D+ VIG GG+ +R ++ G V + + G V + S+ Sbjct: 538 IPEPRPQVSPYAPVIEIITIPEDKALVVIGPGGRNVRDWRDRLGVSVWVHEGGRVSLTST 597 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS--TER 656 + ++ +E I+++ EV K+Y+G+V +V +G FV + GL+H+ + + Sbjct: 598 NREALQQVKEAIQNLVAEVEVGKVYEGKVTRVEPYGVFVEILPGKVGLMHVKDMEGFVKD 657 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 V K V GD V VK+ + DD G+ KL+ Sbjct: 658 VRKAYSV---GDKVKVKVYELDDLGRPKLT 684 >gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. 2_1_36FAA] Length = 668 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/637 (40%), Positives = 394/637 (61%), Gaps = 7/637 (1%) Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+ +RE RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D ++SP Sbjct: 2 YAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQ 61 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186 + +M +S AL +S +PF GP+ G QV Y++G++++NP ++ + SL +L V+GT++A+ Sbjct: 62 MAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAIN 121 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A +LSED++L+A++ GH K +I ++ KE ++ +L+ E+ Sbjct: 122 MVESGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIV 181 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300 DL+ + + EK R +K ++ + + +++ E ++ + E ++ Sbjct: 182 AAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEH 241 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 VR ++ + KVR DGR + +R + A+V L R HGS LF RG TQA+ V+TL + Sbjct: 242 AEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 301 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q VD L + FM HYNF + GE R GAP RREIGHG L RA+ VLP +FP Sbjct: 302 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFP 361 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Y +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ G ++ +L+DI Sbjct: 362 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISYGSNYTVLTDIQ 421 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + + Sbjct: 422 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIP 481 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 R +L P+++ + I D+I+ VIG GG+ I I+ +TG K++ID++G V I SS Sbjct: 482 APRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 541 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I A+E+I + +V+++Y +VV++ FGAFV+ D LVHIS+L+ R Sbjct: 542 DAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNV 601 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 DVV+ GD V VK++ D +G++ SMK + KP Sbjct: 602 EDVVQIGDEVDVKVIKIDAKGRVDASMKALLPRPPKP 638 >gi|296454907|ref|YP_003662051.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|296184339|gb|ADH01221.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum subsp. longum JDM301] Length = 914 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 296/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHQDLNEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ +P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S + A+ +I SI + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729 >gi|225351118|ref|ZP_03742141.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158574|gb|EEG71816.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 887 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 299/726 (41%), Positives = 438/726 (60%), Gaps = 42/726 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA ++L + AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKNIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + E++ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315 Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E EI + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PV+P +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVMPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQAK R IL +++ + + ++ + PR+ +P D+I VIG GK+I I Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+++I I + VPE + Y G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVFISSEGGDGAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734 Query: 692 QNTGKP 697 Q + P Sbjct: 735 QESSAP 740 >gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis ATCC 33277] gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 774 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +K+ETG++A+Q+DGAV T G TV+LATV + G DF PL V Y+E+ A+G+ Sbjct: 45 GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 104 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE + ++ EIL R++DR++RPLF Y E V + + D E P ++ + Sbjct: 105 FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 164 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++G+Y++NP ++ ++ +DL V T D ++MVE E Sbjct: 165 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 224 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245 +++ E +L+ I H +CK +E + K+ +E V D K+ +E Sbjct: 225 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 284 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 E V+ K+ R + + + ++ + ++ E + I + D++ + +R Sbjct: 285 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 341 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ VD Sbjct: 342 AILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 401 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY +R+ Sbjct: 402 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 459 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483 +S+I ES+GSSSMATVC +LAL DAGV I KPV+GIAMGL+ + G ++ ILSDI GDE Sbjct: 460 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 519 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S I+ AL+QAK+GRLHIL ++ + E+R Sbjct: 520 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 579 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600 L PR+E M I + I VIG GGK+I+GI E++GA VNI D G ++I+ ++ Sbjct: 580 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 639 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+AA MI+ I +PEV + Y G++ VM +G FV F ++GL+HIS++ +R Sbjct: 640 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 699 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 D +KEG+++ VKLLD D + GK KLS KV+ Sbjct: 700 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 731 >gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM 16922] gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM 16922] Length = 721 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/708 (40%), Positives = 445/708 (62%), Gaps = 34/708 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG+ A+Q+DG+V+ G+T++LATVV ++ +G DF PLTV+Y+E+ YA G+ Sbjct: 15 GREISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFYAGGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE++P+++E+L R++DR +RP+F + + E QV+I+++ +D + P ++ + Sbjct: 75 IPGNFFRREAKPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMISLISYDEKVMPEALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ ++ +PF + A+V +NG+ ++NP ++ +Q +D+ V ++++V+MVE E Sbjct: 135 AASAAIAITDIPF-TLISEARVIRLNGELMINPSREQLEQADIDIMVGASKESVVMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +LDAI F H E K IEA +LA+ K +++S E + I+E Sbjct: 194 MEEISEREMLDAIQFAHEEIKKQIEAQERLAEKVGKS---FPKREYS--HENHDEEIRE- 247 Query: 252 LRVSCFIPEKYVRC-------KQIDDLKKKMVSYFSSEHSSWNEGEIVSV-------FED 297 +V F +KY + +D + +V F +++ +E E+ V F D Sbjct: 248 -KVWNFGYQKYYDIAKHPSDKHERNDKFEAIVEEFLAQYEE-DEEELARVTPFVKTYFHD 305 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +Q + VR ++L++ +R+DGRD +T+R I +V +L HGSS+F RG+TQA+ +TLG+ Sbjct: 306 VQKEAVRQLILEEGIRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTLGSS 365 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D VD + F +HYNF P +TGE + SRREIGHG LA+RA+ ++P+ Sbjct: 366 RDANLVDGVVLNHEERFFLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALTKMIPEDN 425 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475 PY +R+VSE+ ES+GSSSMATVC +LALMDAG+PI KPV+GIAMGL+ D + + Sbjct: 426 --PYVIRLVSEVLESNGSSSMATVCAGTLALMDAGIPIKKPVSGIAMGLITDTKSGKWTV 483 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S IM AL+QA+ GRLHIL+++ Sbjct: 484 LSDILGDEDHLGDMDFKVTGTKDGITACQMDIKVQGLSMEIMEKALEQAREGRLHILDKL 543 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592 ++ L+ R L P++ +M IP + I VIG GGK+I+ + ++T + + ++ G Sbjct: 544 TETLATPRPNLKPNAPKIALMEIPKEFIGAVIGPGGKIIQELQKETDTVIVLTEEENFGR 603 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V+I + +I+ I+ I VPEV Y V + FGAFV +GLVHIS++ Sbjct: 604 VEINGVNQEKIDQVIARIKQIAFVPEVGATYDAVVKSIKPFGAFVEISKGIEGLVHISEI 663 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697 +R+ K D + D + VK L +DD+ K+KLS K + + T KP Sbjct: 664 EHKRLEKVEDALGINDKIQVKFLGYDDKKKMKLSRKALLPKPERTEKP 711 >gi|23336421|ref|ZP_00121639.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Bifidobacterium longum DJO10A] gi|23466099|ref|NP_696702.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum NCC2705] gi|189440526|ref|YP_001955607.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum DJO10A] gi|81753609|sp|Q8G447|PNP_BIFLO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702620|sp|B3DPX0|PNP_BIFLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|23326831|gb|AAN25338.1| PnpA [Bifidobacterium longum NCC2705] gi|189428961|gb|ACD99109.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum DJO10A] gi|291516498|emb|CBK70114.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum subsp. longum F8] Length = 913 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 298/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ ++P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731 Query: 690 VD--QNTGKP 697 + +N +P Sbjct: 732 FEDQENNARP 741 >gi|227546434|ref|ZP_03976483.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213091|gb|EEI80970.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 913 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 298/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWRLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ ++P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731 Query: 690 VD--QNTGKP 697 + +N +P Sbjct: 732 FEDQENNARP 741 >gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM 16841] gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM 16841] Length = 697 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 282/700 (40%), Positives = 425/700 (60%), Gaps = 23/700 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+ Q++GA L YGET VL+TVV +DG DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDIGRVCAQANGAALIKYGETTVLSTVVASDKPRDGVDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D E P V Sbjct: 67 AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPEV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187 V M+ ++ +S +PF+GP Q+ ++G++++NP D+G L L V+ T+ V+M Sbjct: 127 VGMIGSALVTTMSDIPFDGPCAMTQMGMVDGEFIVNPSQKVWDEGDLQLTVASTRTKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242 +E AN++ E+ +++AI H+ + +I+ + K+ C K I + F+ ++E Sbjct: 187 IEAGANEIPEEKMIEAIYKCHDVNQTIIQFMDKIVAECGKPKHEYTSCAIPDEMFAAMKE 246 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 ++ ED+ + F EK R + I ++ K+ F ++ W GE V + Q Sbjct: 247 IVT---PEDMENAVFTDEKQKREENIREITDKLAEAF-ADKEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 300 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 359 Query: 361 QYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 Q +D L T+R ++ YNF + GE P RREIGHG LA +A+ VLP Sbjct: 360 QKIDGLDANITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALVAVLPSEE 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475 +FPY +R VSE ES+GS+SMA+ C S +ALM AGVPI VAGI+ GLV DD+I+ Sbjct: 418 EFPYAIRAVSETFESNGSTSMASTCASCMALMAAGVPIKSMVAGISCGLVTGDTDDDYIV 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534 L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL+I++E Sbjct: 478 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEV 537 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 MSK +S+ R ++G + P++ + I P++I +V+G GK I I+ +T K++I D+G V Sbjct: 538 MSKAISKPRKEVGAYAPKIIQIQIDPNKIGDVVGQKGKTINEIIARTDVKIDITDEGAVS 597 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + ++ A +MI++IT E +I+ G VV + +FGAF+ F ++G+VHIS++S Sbjct: 598 VCGTDKEKMAEAIDMIKTITTDFEEGQIFTGTVVSIKEFGAFIEFAPGKEGMVHISKISK 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 ER+ + DV+ GD V V L D G+I SMK V +N Sbjct: 658 ERINRVEDVLTLGDKVTVVCLGKDKMGRISFSMKDVPENN 697 >gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] Length = 753 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 43 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 101 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 102 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 161 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V ING++V+NP ++ ++ +DL V T Sbjct: 162 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMVGATY 221 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 222 ENIMMVEGEMDEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 271 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 E + +++ + +C+ K+ R D ++++ + FS E Sbjct: 272 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 331 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I ++G L HGS++F RG+TQ+ Sbjct: 332 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 391 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 392 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 451 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K Sbjct: 452 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 509 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK Sbjct: 510 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 569 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL+++++ ++E L PR+E M IP + I VIG GGK+I+G+ E+TGA + Sbjct: 570 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 629 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID+ G ++IA ++ I+ A +I+ I VPEV ++YKG+V +M +GAFV F + Sbjct: 630 IEEIDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 689 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 690 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 738 >gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis W83] gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis W83] Length = 743 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +K+ETG++A+Q+DGAV T G TV+LATV + G DF PL V Y+E+ A+G+ Sbjct: 14 GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE + ++ EIL R++DR++RPLF Y E V + + D E P ++ + Sbjct: 74 FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++G+Y++NP ++ ++ +DL V T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245 +++ E +L+ I H +CK +E + K+ +E V D K+ +E Sbjct: 194 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 253 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 E V+ K+ R + + + ++ + ++ E + I + D++ + +R Sbjct: 254 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 310 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ VD Sbjct: 311 AILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 370 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY +R+ Sbjct: 371 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483 +S+I ES+GSSSMATVC +LAL DAGV I KPV+GIAMGL+ + G ++ ILSDI GDE Sbjct: 429 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S I+ AL+QAK+GRLHIL ++ + E+R Sbjct: 489 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600 L PR+E M I + I VIG GGK+I+GI E++GA VNI D G ++I+ ++ Sbjct: 549 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 608 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+AA MI+ I +PEV + Y G++ VM +G FV F ++GL+HIS++ +R Sbjct: 609 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 668 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 D +KEG+++ VKLLD D + GK KLS KV+ Sbjct: 669 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 700 >gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 743 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +K+ETG++A+Q+DGAV T G TV+LATV + G DF PL V Y+E+ A+G+ Sbjct: 14 GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE + ++ EIL R++DR++RPLF Y E V + + D E P ++ + Sbjct: 74 FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++G+Y++NP ++ ++ +DL V T D ++MVE E Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245 +++ E +L+ I H +CK +E + K+ +E V D K+ +E Sbjct: 194 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 253 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 E V+ K+ R + + + ++ + ++ E + I + D++ + +R Sbjct: 254 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 310 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ VD Sbjct: 311 AILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 370 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + + F++HYNF P +TGE RREIGHG LA RA+ ++P +PY +R+ Sbjct: 371 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483 +S+I ES+GSSSMATVC +LAL DAGV I KPV+GIAMGL+ + G ++ ILSDI GDE Sbjct: 429 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S I+ AL+QAK+GRLHIL ++ + E+R Sbjct: 489 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600 L PR+E M I + I VIG GGK+I+GI E++GA VNI D G ++I+ ++ Sbjct: 549 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 608 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 I+AA MI+ I +PEV + Y G++ VM +G FV F ++GL+HIS++ +R Sbjct: 609 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 668 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 D +KEG+++ VKLLD D + GK KLS KV+ Sbjct: 669 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 700 >gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis mediterranei U32] gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis mediterranei U32] Length = 753 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 295/719 (41%), Positives = 434/719 (60%), Gaps = 36/719 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E T++L+ + KD DFFPLTV+ +ER YA Sbjct: 21 FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYA 80 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F+ +NE QV+I V + + V+ Sbjct: 81 AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPYDVL 140 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ ++GLPF GPV G +V + Q+V P + ++ + ++ V+G A Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALVEDQWVAFPTWSQLEKATFNMVVAGRIVGDDVA 200 Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE---- 228 ++MVE E + + D++ A+ G KP I EA +LA + AK Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCEAQQQLADVAAKPTGEF 260 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ + + + + ++ + +DL + IP K R D++K ++ E Sbjct: 261 PVFLAYE--QDVYDAVAAIATDDLARALQIPGKQDRDAATDEVKAAVLEKIGLGEGEAFE 318 Query: 289 G---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 G EI F+ + K++R +L +K+RMDGR +R +SA+V ++ R HGS+LF RG+ Sbjct: 319 GRDKEIGGAFKALTKKIMRQRVLTEKIRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGE 378 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL EQ +DSLS +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 379 TQILGVTTLNMLRLEQQIDSLSPETHKRYMHHYNFPPFSTGETGRVGSPKRREIGHGMLA 438 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP+ +FPY +R VSE S+GS+SM +VC S++AL +AGVP+ PVAGIAMG Sbjct: 439 ERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMALYNAGVPLKAPVAGIAMG 498 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D ++ L+DI G ED LG MDFKVAGT ITA+Q+D K+ GI ++ AL Sbjct: 499 LVSDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAAL 558 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +QAK RL IL +++ + +S ++ ++PRV + IP D+I VIG GK+I I EQT Sbjct: 559 KQAKDARLTILEVIAEAI-DSPDEMSPYSPRVTSVKIPVDKIGEVIGPKGKMINSITEQT 617 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGT+ + ++ EAA ++I +I + +P+V + + G VVK FGAFV Sbjct: 618 GADISIEDDGTIYVGAADGPSAEAAIDLINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 677 Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 +DGLVHIS+L +R+AK DVV GD + V++ D D+RGKI L + V D KP Sbjct: 678 LPGKDGLVHISKLGNGKRIAKVEDVVNVGDKLRVEIADIDNRGKISL-IVVKDDEPAKP 735 >gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum DSM 3986] gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum DSM 3986] Length = 717 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 285/704 (40%), Positives = 431/704 (61%), Gaps = 24/704 (3%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 + + +E AGR L+++ GR+A Q++GA YG+T VL+T +DG DFFPL+V Sbjct: 21 EFKSYSMELAGRILRVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVE 80 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+ + V+ D Sbjct: 81 YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDP 140 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVS 179 + SP + +M+ ++ A +S +PF+GP Q+ + G +V+NP +E+Q L L V+ Sbjct: 141 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNP--NEEQMAVSDLKLTVA 198 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+D V+M+E AN++ ++ +++AI + K +I I K+ K+ S Sbjct: 199 STKDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIAFIDKIVAEVGKQK---HSYTAFT 255 Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292 + +E+S I+E ++ + F EK +R + I + +K+ F ++ W GE V Sbjct: 256 IPDELSTAIREIVPQDEMEKAVFTDEKQIREENIKAITEKLEEAF-ADKEEWLSLLGEAV 314 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + Q K VR ++L + R DGR +R ++A+V ++ R HGS++F RG TQ VV Sbjct: 315 YQY---QKKTVRKMILKDQKRPDGRAMTQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVV 371 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TL + Q +D L+ ++ +H YNF + GE P RREIGHG LA RA+ P Sbjct: 372 TLAPLAEAQKIDGLNQSETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIP 431 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KD 469 VLP +FPY +R VSE ES+GS+SMA+ C S +ALM AGVPI K VAGI+ GLV + Sbjct: 432 VLPAPEEFPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKKMVAGISCGLVTGES 491 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 DD+++L+DI G ED G MDFKV GTDSGITA+QMD+KI G++++I+ A+ + R Sbjct: 492 DDDYVLLTDIQGLEDFFGDMDFKVTGTDSGITAIQMDIKIHGLTKDIVKGAIARCHEARD 551 Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 I+ M ++E R ++ ++ P++ + I P +I +V+G GK I I+E TG K++I Sbjct: 552 FIMETCMKPCIAEPRKEISKYAPKIAQIQISPSKIGDVVGKQGKTINKIIEDTGVKIDIS 611 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 +DG V ++ + A I+ A ++IR IT E I +G+VV++++FGAFV +DG+VH Sbjct: 612 EDGLVSVSGTDQAMIDKAVDIIRGITIEIEAGMIMQGKVVRILEFGAFVELAPGKDGMVH 671 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 IS+LS RV K DVVK GD V VK++ D +G+I LSMK D Sbjct: 672 ISKLSDRRVEKVEDVVKIGDEVTVKVIKVDAIKGRIDLSMKPSD 715 >gi|239620975|ref|ZP_04664006.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322689964|ref|YP_004209698.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. infantis 157F] gi|322691904|ref|YP_004221474.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. longum JCM 1217] gi|239516076|gb|EEQ55943.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|320456760|dbj|BAJ67382.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461300|dbj|BAJ71920.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. infantis 157F] Length = 913 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 296/718 (41%), Positives = 434/718 (60%), Gaps = 47/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + ++E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLANEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ +P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S + A+ +I SI + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729 >gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC 33656] gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC 33656] Length = 718 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 25/700 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GAV YG+T VL+T +DG DFFPL+V ++E+ Y Sbjct: 29 MELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 88 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D E P + Sbjct: 89 SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 148 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ + A+ +S +PF+GP Q+ ++G++++NP + D+G L L V+ T++ V+M Sbjct: 149 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 208 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H+ + VI + ++ K +S + E+M + Sbjct: 209 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 265 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299 IK E + + F EK R + I + +++ F+ NE + + E I Q Sbjct: 266 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 320 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 321 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 380 Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q +D L T+R +M HYNF + GE P RREIGHG LA +A+ PVLP Sbjct: 381 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSI 438 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474 +FPYT+R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV DDF+ Sbjct: 439 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 498 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL+I++E Sbjct: 499 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 558 Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 MSK ++E R ++ E+ P++E + I P +I +V+G GK I I+++TG K++I DDG V Sbjct: 559 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 618 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + + I A +MI+ IT E +I +G VV + +FGAF+ F ++G+VHIS+++ Sbjct: 619 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 678 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ER+ + DV+ GD V V L D G+I SMK V ++ Sbjct: 679 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 718 >gi|256396976|ref|YP_003118540.1| polynucleotide phosphorylase/polyadenylase [Catenulispora acidiphila DSM 44928] gi|256363202|gb|ACU76699.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Catenulispora acidiphila DSM 44928] Length = 737 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/724 (42%), Positives = 437/724 (60%), Gaps = 46/724 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A E T+VL+ +S KD DFFPLTV+ +ER YA Sbjct: 17 FGQRTVRFETGRLARQAAGSVVAYLDEETMVLSATTASKSPKDSLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VG+IPG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ +M + + VV Sbjct: 77 VGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V I ++V P E D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIQDRWVAFPTHTELADAVFDMVVAGRTLEDGDV 196 Query: 184 AVLMVELEANQLS------------EDVVLDAIIFGHNECKPVIEAI--------SKLAK 223 A++MVE EA + E+VV D G KP I+A+ S+ AK Sbjct: 197 AIMMVEAEATSQTVSLVAGGSTAPTEEVVAD----GLEAAKPFIKALCVAQQELASQAAK 252 Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 A+ P +D +D + E +S K +L + I K+ R +++D +K +V + + Sbjct: 253 ATAEFPRFLDYQD--DVLEAVSATAKNELSNALTIAGKHEREEELDRVKALVVEKLAQQF 310 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI F + K+VR ++ +VR+DGR +R +SA+V ++ R HGS+LF R Sbjct: 311 EG-REKEIGGAFRALTKKLVRERIIRDQVRIDGRGVRDIRPLSAEVEVVPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + + TL EQ +D+L+ R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGITTLNMLRMEQQLDTLNPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV DG +++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLVSAEIDGKTEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QAK RLHIL+ M + + ++ EF PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQAKDARLHILDVMMEAIDVPD-EMSEFAPRIISVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I +S+ A EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGASNGAAAEAARVTINQIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RDGL+H+SQL +RV DVVK GD + V++ + D RGK+ L + V+ Sbjct: 669 SLMPGRDGLLHVSQLKKLAGGKRVENVEDVVKVGDKLQVEIAEIDSRGKLSL-IPVLPDE 727 Query: 694 TGKP 697 KP Sbjct: 728 ESKP 731 >gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide nucleotidyltransferase [Micromonospora sp. L5] gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Micromonospora sp. L5] Length = 789 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/704 (40%), Positives = 426/704 (60%), Gaps = 33/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ + ++ DFFPLTV+ +ER YA Sbjct: 20 FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ V+ D + VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184 + AAS + LSGLPF GP+ +V +++GQ+V P L+E + + D+ V+G + A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + ++ D + G KP I A S+LA++ AK Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D +D + + ++ + + D+ + I K R + +D +K K+ + E Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + F + VR +L ++VR+DGR +R +SA+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ VD+LS R +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R IL+ M + + E+ ++ ++ PRV + IP D+I VIG G+ I I ++TGA+ Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ + +++ +AA + I I + +P+V + + G VVK FGAF+ Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675 Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +RV K D + GD V V++ D D RGKI L Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719 >gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Micromonospora aurantiaca ATCC 27029] Length = 796 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/704 (40%), Positives = 426/704 (60%), Gaps = 33/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ + ++ DFFPLTV+ +ER YA Sbjct: 20 FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ V+ D + VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184 + AAS + LSGLPF GP+ +V +++GQ+V P L+E + + D+ V+G + A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + ++ D + G KP I A S+LA++ AK Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D +D + + ++ + + D+ + I K R + +D +K K+ + E Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + F + VR +L ++VR+DGR +R +SA+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ VD+LS R +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R IL+ M + + E+ ++ ++ PRV + IP D+I VIG G+ I I ++TGA+ Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ + +++ +AA + I I + +P+V + + G VVK FGAF+ Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675 Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +RV K D + GD V V++ D D RGKI L Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719 >gi|309812542|ref|ZP_07706290.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Dermacoccus sp. Ellin185] gi|308433520|gb|EFP57404.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Dermacoccus sp. Ellin185] Length = 826 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 293/716 (40%), Positives = 437/716 (61%), Gaps = 39/716 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q++GAV+A + T +L+T + K+ DFFPLTV+ +ER+YA Sbjct: 18 FGTRTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKEHFDFFPLTVDVEERSYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ + IL R+IDR +RP F K +NE QV+I V+ + + V+ Sbjct: 78 AGKIPGSFFRREGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQVVITVLAQNPDVQYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184 ++ ASA+ +SGLPF GP+ G ++ I+GQ+V P D ++ + D+ V+G A Sbjct: 138 AINGASASTQISGLPFTGPIGGVRISLIDGQWVAFPNFSDIERSAFDMVVAGRIVGDDVA 197 Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228 ++MVE E+ + +E+VV + + + + EA +LAK AKE Sbjct: 198 IMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLCEAQMELAKQAAKEVQDF 257 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287 P+ +D +D + E +++ + + I K R ++D++K + + + E + Sbjct: 258 PVFLDYQD--DVYEAVAKDGTDQTAAAMTIAGKAERESKLDEIKDALKAELAGEGKPFEG 315 Query: 288 -EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + F +Q ++VR +L KVR+DGR +R +SA+V +L R HGS++F RG+T Sbjct: 316 RESEVSAAFRSLQKQLVRERILRDKVRIDGRGLADIRALSAEVEVLPRVHGSAIFERGET 375 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ +DSLS R +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 376 QIMGVTTLNMLRMEQQIDSLSPRTRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 435 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL Sbjct: 436 RALMPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 495 Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 V DG+ + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ AL Sbjct: 496 VSAEIDGETQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPAQVLAGALT 555 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA+ RLHIL+ M++ + ++ ++ F PRV + IP D+I VIG GK+I I E TG Sbjct: 556 QARDARLHILDVMNEAI-DAPDEMSPFAPRVLAVKIPVDKIGEVIGPKGKMINQIQEDTG 614 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640 A ++I+DDGTV I ++ EAAR + +I + +PEV + + G VVK FGAFV Sbjct: 615 ADLSIEDDGTVYIGATDGPSAEAARNAVNAIANPQMPEVGERFLGTVVKTTTFGAFVSLL 674 Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +DGL+HIS++ +R+ DV+K G V V+L + D RG KLS+ VV++ Sbjct: 675 PGKDGLLHISEVRKLVGGKRIDAVEDVLKIGRKVQVELKEIDPRG--KLSLGVVEK 728 >gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759] gi|158450606|gb|EDP27601.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759] Length = 731 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 288/694 (41%), Positives = 416/694 (59%), Gaps = 24/694 (3%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 E AGR L ++ GR+A Q++GA YG+T VL+T +DG DFFPL+V Y+E+ Y+ Sbjct: 44 EIAGRMLTVDIGRVAAQANGAAFIKYGDTTVLSTCTASEKPRDGIDFFPLSVEYEEKLYS 103 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+ + VM D E P +V Sbjct: 104 VGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPELV 163 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S A +S +PF+GP QV I+G++++NP + D+G L L V+ T V+M+ Sbjct: 164 AMLGSSIATCISDVPFDGPCAMTQVGLIDGEFIINPTQKQWDEGDLKLTVASTSQKVIMI 223 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEE 243 E AN + E +++AI H+ + +I I+++ K + + F+ ++E Sbjct: 224 EAGANIVPEAKMIEAIYMAHDINQDIIAFINEIVAEVGKPKHSYVSCAVPEELFAAIKEI 283 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED----IQ 299 + ED + F EK VR + I + +K+ F +++ W ++V D Q Sbjct: 284 VPPAAMED---AVFSDEKQVREENIRQITEKLEEAF-ADNEEW-----LAVLPDAIYQYQ 334 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR +R ++A+V ++ R HGS++F RG TQ V TL + Sbjct: 335 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSE 394 Query: 360 EQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q VD L +M HYNF + GE P RREIGHG LA RA+ PVLP + Sbjct: 395 IQRVDGLDENVTTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALLPVLPSEEE 454 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476 FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV DD+I+L Sbjct: 455 FPYAIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKAMVAGISCGLVTGDTDDDYIVL 514 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535 +DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL I+ M Sbjct: 515 TDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMETCM 574 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 ++ R + EF P+++ + I P++I VIG GK I I+E+TG K++IDD+G + I Sbjct: 575 KPAIAAPRPTVNEFAPKIKQIKIDPEKIGEVIGQRGKTINTIIEETGVKIDIDDEGRISI 634 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A ++ A EMI I + EV K Y G+VVKV+D GA V +DGL+HIS+LS + Sbjct: 635 CGVEQAGMDKAIEMINMIVEPLEVGKNYHGKVVKVIDCGAIVSLAPNKDGLIHISKLSDK 694 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688 RVAK DVV GD V VK++ D+R G+I LS+K Sbjct: 695 RVAKVEDVVNVGDEVDVKVIKIDERAGRISLSLK 728 >gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM 17629] Length = 696 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 25/700 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++GAV YG+T VL+T +DG DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D E P + Sbjct: 67 SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ + A+ +S +PF+GP Q+ ++G++++NP + D+G L L V+ T++ V+M Sbjct: 127 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H+ + VI + ++ K +S + E+M + Sbjct: 187 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299 IK E + + F EK R + I + +++ F+ NE + + E I Q Sbjct: 244 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 299 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 358 Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q +D L T+R +M HYNF + GE P RREIGHG LA +A+ PVLP Sbjct: 359 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSV 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474 +FPYT+R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV DDF+ Sbjct: 417 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL+I++E Sbjct: 477 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 536 Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 MSK ++E R ++ E+ P++E + I P +I +V+G GK I I+++TG K++I DDG V Sbjct: 537 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 596 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + + I A +MI+ IT E +I +G VV + +FGAF+ F ++G+VHIS+++ Sbjct: 597 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 656 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ER+ + DV+ GD V V L D G+I SMK V ++ Sbjct: 657 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696 >gi|213693120|ref|YP_002323706.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|257096682|sp|B7GNH2|PNP_BIFLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|213524581|gb|ACJ53328.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459298|dbj|BAJ69919.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 914 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 295/718 (41%), Positives = 434/718 (60%), Gaps = 47/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ ++P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S + A+ +I SI + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV+ DGL+HISQ+ + ER+ DV++EGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISLAI 729 >gi|312133835|ref|YP_004001174.1| pnp [Bifidobacterium longum subsp. longum BBMN68] gi|311773126|gb|ADQ02614.1| PnP [Bifidobacterium longum subsp. longum BBMN68] Length = 913 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AK+ Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKK-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHQDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ ++P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S E A+ +I I + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731 Query: 690 VD--QNTGKP 697 + +N +P Sbjct: 732 FEDQENNARP 741 >gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola CRIS 18C-A] gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola CRIS 18C-A] Length = 742 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 64 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P E P +V ING+YV++P ++ + +DL V T+D ++MVE E Sbjct: 124 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V D +EE+ + ++++ Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 241 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298 +C+ +K R + + +K + + H+ +E EI F D+ Sbjct: 242 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I +V L HGS+LF RG+T ++ TLGT+ Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA RA+ +P A Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN ++ Sbjct: 480 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 ++E R ++ PR+ + IP + I VIG GGK+I+ + E TGA + I++ G V Sbjct: 540 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGVGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I+SI VPE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 QVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ D +KEGD + VKLLD D + GK KLS +V+ Sbjct: 660 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 698 >gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis DSM 16608] gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis DSM 16608] Length = 751 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 73 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P E P +V ING+YV++P ++ + +DL V T+D ++MVE E Sbjct: 133 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V D +EE+ + ++++ Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 250 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298 +C+ +K R + + +K + + H+ +E EI F D+ Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I +V L HGS+LF RG+T ++ TLGT+ Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ +D++ F++HYNF P TGE RREIGHG LA RA+ +P A Sbjct: 371 DEKMIDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN ++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 ++E R ++ PR+ + IP + I VIG GGK+I+ + E TGA + ID+ G V Sbjct: 549 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGAVITIDETDGVGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I++I VPE+ +IY+G V +M +G FV +DGL+HIS++ Sbjct: 609 QVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ D +KEGD + VKLLD D + GK KLS +V+ Sbjct: 669 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707 >gi|317483033|ref|ZP_07942035.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|316915534|gb|EFV36954.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA] Length = 913 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 296/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255 Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 +K+F E + ++ +DL + I EK R +I ++K+ + + E Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312 Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + ++ E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+ Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + EQ +D+LSG Q +M +Y P +TGE R+G+P RREI Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PV Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492 Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQAK R IL +++ + + ++ EF PR+ +P ++I VIG GK+I Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA++ I+DDGTV I+S + A+ +I SI + VPE + Y G+VVK F Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGDAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV+ DGL+HISQ+ + ER+ DV+KEGDTV V + DDRGKI L++ Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729 >gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola F0289] gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola F0289] Length = 751 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 73 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P E P +V ING+YV++P ++ + +DL V T+D ++MVE E Sbjct: 133 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V D +EE+ + ++++ Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 250 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298 +C+ +K R + + +K + + H+ +E EI F D+ Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I +V L HGS+LF RG+T ++ TLGT+ Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA RA+ +P A Sbjct: 371 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN ++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 ++E R ++ PR+ + IP + I VIG GGK+I+ + E TGA + I++ G V Sbjct: 549 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGVGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I+SI VPE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 609 QVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ D +KEGD + VKLLD D + GK KLS +V+ Sbjct: 669 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707 >gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale M104/1] Length = 696 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/700 (40%), Positives = 426/700 (60%), Gaps = 25/700 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A Q++G V YG+T VL+T +DG DFFPL+V ++E+ Y Sbjct: 7 MELAGRTLTVDIGRVAAQANGTVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN IL R+IDR +RPLF K Y+N+ + VM D E P + Sbjct: 67 SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 V+M+ + A+ +S +PF+GP Q+ ++G++++NP + D+G L L V+ T++ V+M Sbjct: 127 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ ED +++AI H+ + VI + ++ K +S + E+M + Sbjct: 187 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299 IK E + + F EK R + I + +++ F+ NE + + E I Q Sbjct: 244 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 298 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 299 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 358 Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 Q +D L T+R +M HYNF + GE P RREIGHG LA +A+ PVLP Sbjct: 359 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSV 416 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474 +FPYT+R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV DDF+ Sbjct: 417 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL+I++E Sbjct: 477 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 536 Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 MSK ++E R ++ E+ P++E + I P +I +V+G GK I I+++TG K++I DDG V Sbjct: 537 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 596 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + + I A +MI+ IT E +I +G VV + +FGAF+ F ++G+VHIS+++ Sbjct: 597 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 656 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 ER+ + DV+ GD V V L D G+I SMK V ++ Sbjct: 657 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696 >gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Stackebrandtia nassauensis DSM 44728] gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Stackebrandtia nassauensis DSM 44728] Length = 825 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 292/704 (41%), Positives = 425/704 (60%), Gaps = 39/704 (5%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R + TGR+A+Q+ G+VL G+TVVL+T + K+ DFFPLTV+ +ER YA G+I Sbjct: 32 REITFSTGRLAKQAAGSVLVQLGDTVVLSTTAAGKHPKEHFDFFPLTVDVEERMYAAGRI 91 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH-VVSMV 132 PG + RRE RP+E+ IL R+IDR +RP F K +NE QVI V+ D E+ P+ VV+M Sbjct: 92 PGSFFRREGRPSEDAILTCRLIDRGLRPSFIKGLRNEVQVIETVLALD-EAHPYDVVAMN 150 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVL 186 ASA+ LSGLP +GP+ +V ING++V P L++ + + D+ V+G A++ Sbjct: 151 GASASTALSGLPCQGPLGSTRVANINGEWVAFPTLEQLETATFDMVVTGRVVEGGDVAIM 210 Query: 187 MVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISK----LAKMCAKE----PI 230 MVE EA + +++ + + G KPVI + + LA + AK P+ Sbjct: 211 MVEAEATDKAVELIGGGSVAPTEEVVAAGLEAAKPVISELCRAQRELAGVAAKPAVEFPL 270 Query: 231 VIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 + D F+++E E + +L I +K R ++D +K +V + E E Sbjct: 271 FPEYGDDVFARVEAE----VGTELAAGLTIADKQEREAELDRIKAALVEKIAGEFEE-RE 325 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 GEI S + K+VR +L + VR+DGR + +R +SA+V +L R HGS+LF RG+TQ Sbjct: 326 GEIGSALRSLTKKLVRRRVLTEGVRIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQI 385 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS + +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 386 MGVTTLNMLRMEQAIDTLSPVSKKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 445 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I PVLP +FPY +R VSE S+GS+SM +VC S+++LM AGVP+ PVAGIAMGL+ Sbjct: 446 IVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKAPVAGIAMGLIS 505 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D ++ ++DI G ED G MDFKVAGT + +TA+Q+D K+ GI +++ AL QA Sbjct: 506 DEVDGKTEYVTITDILGAEDAFGDMDFKVAGTRNFVTALQLDTKLDGIPSDVLAGALSQA 565 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R I++ M++ ++E + E PRV + +P D+I VIG G+ I I E+TGA Sbjct: 566 YDARQAIMDVMAEAIAEPS-AMAETAPRVTTVKVPVDKIGMVIGPKGQTINSITEETGAD 624 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I +++ EAA MI I + +P V + G VVK FGAF+ Sbjct: 625 ISIEDDGTIYIGATTGPAAEAAVAMINGIANPTLPNVGDRFLGTVVKTAAFGAFISLVPG 684 Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +R+ K DV+ GD + V++ D D RGKI L Sbjct: 685 RDGLLHISKIGDGKRIDKVEDVLNVGDKIEVEIADVDGRGKIYL 728 >gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] Length = 737 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 290/692 (41%), Positives = 423/692 (61%), Gaps = 16/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G+T++L TVV + K DF PL V Y+E+ A G+ Sbjct: 19 GREIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAACGR 78 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+++RE + ++EIL++R+IDR++RPLF Y E V +N++ D + P ++ + Sbjct: 79 YPGGFMKREGKANDSEILVARLIDRALRPLFPSDYHAEVYVTVNLISADKDIQPDALAGL 138 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I GQYV+NP + Q LD+ V GT D +LMVE E Sbjct: 139 AASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQMQDADLDIMVGGTIDNILMVEGE 198 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE+V+L AI F H E K +L+K K+ V + +EE+ Q I + Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEVNDEELRQTIIRE 256 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305 L + K+ R + L+ + + FS E I F +D+Q K +R Sbjct: 257 LYDKAYAIATSGTMKHEREDAFNALEAEFATRFSEEELVEKAPLIHKYFHDDVQKKAMRN 316 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD+ R+DGR ++ +R I +VG L HGS++F RG+TQ++ VTLGT+ DE+ D Sbjct: 317 MILDEGKRLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDE 376 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + F++HYNF P +TGE SRREIGHG LA RA+ P++P + PY +R+ Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMVPVGEENPYAVRV 436 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483 VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ D + +LSDI GDE Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSATGRWAVLSDILGDE 496 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S ++ AL+QA+ GR+HIL ++++ ++E R Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAKALEQARVGRMHILGKLTECIAEPR 556 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600 F PR+ + IP D I VIG GGKVI+ I + T D+ G V I Sbjct: 557 ADYRPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITETDNKGVVDIFGLDK 616 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++AA I+SI PEV +Y G+V +M FGAFV +D L+HIS++ +R Sbjct: 617 EAMDAALSRIKSIVAQPEVGDVYNGKVRSIMPFGAFVEIMPGKDALLHISEIDYKRFETM 676 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGD + VK++ D + K+KLS +V+ Sbjct: 677 EETGLKEGDMIEVKVIGIDPKTNKLKLSHRVL 708 >gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus DSM 2876] gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus DSM 2876] Length = 705 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 274/693 (39%), Positives = 421/693 (60%), Gaps = 15/693 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 + ++ AGR L ++ R+A+Q++GA YG+TVVL+T +DG DFFPL+V Y+E Sbjct: 11 SFSMDLAGRTLTVDVDRVAKQANGAAFMHYGDTVVLSTATASEKPRDGVDFFPLSVEYEE 70 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D + S Sbjct: 71 KLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNLVMSVDPDCS 130 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184 P + +M+ ++ ++ +S +PF+GP QV I+G++V+NP + S L L V+ T++ Sbjct: 131 PELTAMLGSAISVAISDIPFDGPCATTQVGMIDGEFVINPSGSQMAVSDLKLTVASTREK 190 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 V+M+E AN++ E +++AI H + +I I K+ C K S + EE+ Sbjct: 191 VIMIEAGANEIPEARMIEAIYKAHEVNQQIIAFIDKIVAECGKPKHEYTS---CAIPEEL 247 Query: 245 SQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 IKE ++ V F PEK VR +++ +LK + F ++ W +V++ + Sbjct: 248 FAAIKEIVPPAEMEVVMFAPEKQVREERVRNLKDMLCEKF-ADKEEWLPLIDEAVYQ-YE 305 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 K VR ++L R DGR+ +R ++A+V ++ R HGS++F RG TQ V TL D Sbjct: 306 KKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSD 365 Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +D L+ + + +M HYNF + GE P RREIGHG LA RA+ PVLP + Sbjct: 366 AQKIDGLNDQETSKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALIPVLPSVEE 425 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV + DDF++L Sbjct: 426 FPYAIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGETDDDFVLL 485 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEM 535 +DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + R I+ N M Sbjct: 486 TDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRQIVEGAIARCREARFFIMDNCM 545 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 SK ++E R ++G++ P++ + I P +I +V+G GK I I+E+TG K++I DDG V + Sbjct: 546 SKAIAEPRKEVGKYAPKIIQIQIDPAKIGDVVGQRGKTINAIIEETGVKIDITDDGAVSV 605 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + ++ A + I++I E + +G+V+ + +FGAFV F ++G++HIS++S + Sbjct: 606 CGTDKEAMDKAVKYIQTIVTDYEEGLVLEGKVISIKEFGAFVEFAPGKEGMIHISKVSKD 665 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 R+ DV+ GD V L D G+ S+K Sbjct: 666 RIEHVEDVLTLGDVVKCVCLGKDKMGRYSFSIK 698 >gi|271963663|ref|YP_003337859.1| polyribonucleotide nucleotidyltransferase [Streptosporangium roseum DSM 43021] gi|270506838|gb|ACZ85116.1| Polyribonucleotide nucleotidyltransferase [Streptosporangium roseum DSM 43021] Length = 773 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/719 (40%), Positives = 435/719 (60%), Gaps = 38/719 (5%) Query: 1 MFDVHTVEI-----EWAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQ 54 M VH+ E + R ++ ETGR+ARQ+ G AV+ ET+VL+ ++ K+ Sbjct: 1 MEGVHSSEAVIDNGSFGTRTIRFETGRLARQAAGSAVVYLDDETMVLSATTASKNPKENL 60 Query: 55 DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114 DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ Sbjct: 61 DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120 Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173 +M + + VV++ AAS + L+GLPF GP+ G +V I GQ+V P E + Sbjct: 121 ATIMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIEGQWVAFPTHSELANAT 180 Query: 174 LDLFVSG--TQD---AVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216 D+ V+G +D A++MVE E+ + + +V D + G KP I E Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRDTLKLVADGAVAPTEETVAQGLEASKPFIKVLCE 240 Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272 A SK+AK+ AK P+ +D +D + E ++ +K +L + I K R ++D +K Sbjct: 241 AQSKIAKVAAKATAEYPLFLDYQD--DVLEAVTGAVKSELAAALTIAGKQERETELDRVK 298 Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332 + SE E EI + F + K++R ++ + VR+DGR + +R ++A+V ++ Sbjct: 299 ALALEKVGSEFEG-REKEISAAFRSLTKKLMRERVISEGVRIDGRGVKDIRQLNAEVHVV 357 Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392 R HGS+LF RG+TQ + + TL EQ +D+L+ + +M +YNF P +TGE R+G Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQMIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417 Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452 +P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S++AL+DAG Sbjct: 418 SPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477 Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 VP+ VAGIAMGL+ +GD ++ L+DI G ED +G MDFKVAGT ITA+Q+D K+ GI Sbjct: 478 VPLKGIVAGIAMGLINEGDQYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDGI 537 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 +++ AL+QAK RL I++ M + + +S ++ PR+ + +P D+I VIG GK Sbjct: 538 PASVLAAALKQAKGARLAIIDVMQEAI-DSPAEMNATAPRIITIKVPVDKIGEVIGPKGK 596 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I + TGA++ I+DDGT+ I ++ EAAR I +I + +PEV + Y G VVK+ Sbjct: 597 MINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVKI 656 Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAF+ +DGL+H+SQ+ +R+ DV+ G+ V V++ + D RGK+ L Sbjct: 657 AAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMNVGEKVQVEIAEIDSRGKLSL 715 >gi|294786716|ref|ZP_06751970.1| polyribonucleotide nucleotidyltransferase [Parascardovia denticolens F0305] gi|294485549|gb|EFG33183.1| polyribonucleotide nucleotidyltransferase [Parascardovia denticolens F0305] Length = 922 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 296/714 (41%), Positives = 428/714 (59%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A +++VL+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ ++ + + S ++ Sbjct: 78 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 +M AASA+ M+SGLPFEGPV G ++ I+ Q+V P E ++ +L V+G Sbjct: 138 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ K D+ Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQ-AQNELKAQAAKDT 256 Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--- 284 KDF E + Q+ DL + I EK R +I +K+ +V +SE + Sbjct: 257 KDFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGME 316 Query: 285 -SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E EI + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 317 DAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQR 376 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ D+LSG +M +Y P +TGE R+G+P RREIGHG Sbjct: 377 GETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+DAGVP+ PVAGIA Sbjct: 437 LAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIA 496 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 497 MGLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQA R IL + + + + ++ + PR+ +P D+I VIG GK+I I E Sbjct: 557 ALQQAYEARTTILEVIDECI-DGVNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQE 615 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637 +TGA+V+I+DDGTV IAS EAAR++I IT +PE + Y+G+VVK FGAFV Sbjct: 616 KTGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFV 675 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + +R+ DV++EGDTV V + DD+GKI L++ Sbjct: 676 NLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729 >gi|315226331|ref|ZP_07868119.1| polyribonucleotide nucleotidyltransferase [Parascardovia denticolens DSM 10105] gi|315120463|gb|EFT83595.1| polyribonucleotide nucleotidyltransferase [Parascardovia denticolens DSM 10105] Length = 966 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/714 (41%), Positives = 428/714 (59%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A +++VL+T S K+ DFFPLTV+ +E+ YA Sbjct: 62 FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 121 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ ++ + + S ++ Sbjct: 122 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 181 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 +M AASA+ M+SGLPFEGPV G ++ I+ Q+V P E ++ +L V+G Sbjct: 182 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 241 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 A+ M+E A + + ++ D + G KP I+ I + A+ K D+ Sbjct: 242 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQ-AQNELKAQAAKDT 300 Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--- 284 KDF E + Q+ DL + I EK R +I +K+ +V +SE + Sbjct: 301 KDFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGME 360 Query: 285 -SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E EI + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF R Sbjct: 361 DAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQR 420 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ D+LSG +M +Y P +TGE R+G+P RREIGHG Sbjct: 421 GETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 480 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+DAGVP+ PVAGIA Sbjct: 481 LAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIA 540 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 541 MGLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 600 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 ALQQA R IL + + + + ++ + PR+ +P D+I VIG GK+I I E Sbjct: 601 ALQQAYEARTTILEVIDECI-DGVNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQE 659 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637 +TGA+V+I+DDGTV IAS EAAR++I IT +PE + Y+G+VVK FGAFV Sbjct: 660 KTGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFV 719 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + DGL+HISQ+ + +R+ DV++EGDTV V + DD+GKI L++ Sbjct: 720 NLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 773 >gi|218133599|ref|ZP_03462403.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC 43243] gi|217990974|gb|EEC56980.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC 43243] Length = 742 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/700 (40%), Positives = 421/700 (60%), Gaps = 21/700 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M+ +++EI AGR L ++ GR+ Q++GA L YG+TVVL+T + ++G DFFPL+ Sbjct: 47 MYKSYSMEI--AGRTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLS 104 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM Sbjct: 105 VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSV 164 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E P +V+M+ AS A +S +PF+GP Q+ I+G++V+NP ++ G L L V+ Sbjct: 165 DPECRPELVAMLGASIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVA 224 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T V+M+E AN++ E +++AI H + +IE I+K+ K S + Sbjct: 225 STSQKVIMIECGANEVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPK---HSYESCA 281 Query: 240 LEEEMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292 + +EM +K E++ V+ F +K R ID + +K F +++ W GE V Sbjct: 282 IPQEMFDAMKAIVTPEEMEVAVFTDDKQTREANIDAITEKFKEAF-ADNEEWLAILGEAV 340 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + Q K VR ++L R DGR +R ++A++ L+ R HGS++F RG TQ VV Sbjct: 341 YQY---QKKTVRKMILKDHKRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVV 397 Query: 353 TLGTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TL + Q VD L ++ HYNF + GE P RREIGHG LA RA+ P Sbjct: 398 TLAPLSEAQKVDGLDENVTAKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIP 457 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469 VLP +FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV Sbjct: 458 VLPSEEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDT 517 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 DD+I+L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL Sbjct: 518 DDDYIVLTDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARL 577 Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 I++ M ++E R ++G++ P++ I P +I +V+G GK I I+E+TG K++I+ Sbjct: 578 FIMDTCMKPAIAEPRKEVGKYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDIN 637 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 DDG V I ++ A + I +I E +I++G+VV + +FGAF+ F ++G+VH Sbjct: 638 DDGFVSICGVESEGMQKALKYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVH 697 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 IS+++ ER+ DV+ GDTV L D G+I S+K Sbjct: 698 ISKIAKERINHVEDVLTLGDTVRCICLGKDKMGRISFSIK 737 >gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95] gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95] Length = 695 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/698 (40%), Positives = 438/698 (62%), Gaps = 32/698 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 +E E GR L++E G++A+QS G+V+ T+ E+ +L T GQDFFPLTV +QE+ Sbjct: 4 LEKELFGRKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEETVKGQDFFPLTVEFQEK 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIPGG+++RE +P++ IL +R+IDR IRPLF + + NE QVI V S Sbjct: 64 FYAVGKIPGGFIKREGKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNGDSI 123 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185 + AS AL LS +PF G V G ++ Y++GQ++ P ++ + S +D+ V+GT+DAV Sbjct: 124 ETWGITGASLALNLSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSKIDMVVAGTKDAV 183 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKL--AKMCAKEPIVIDSKDFSK 239 MVE E+ ++SE+ +++A++F + K +I +S+L K ++ IV ++F Sbjct: 184 TMVEGESLEVSEEEMVEALMFAQEKIKEIIAIEEEFLSELNIEKWEVQKEIV--PEEF-- 239 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED- 297 +E+ +S + +E+L+ K R K I + KK ++ F W+ V+ FED Sbjct: 240 IEDYLSLIDEEELKKVLLTKGKKNRDKVISEYKKNVMKKFEEIFLEKWS----VAFFEDK 295 Query: 298 -------IQAKV---VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + K+ +R +++++ R+DGR + +RDI+ +VGL+ R HGS+LF RG+TQ Sbjct: 296 KRFLENAFEEKLQDSMRKMIINENKRVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQ 355 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ VTLG D Q +D++ + FM+HYNF P +TGEV R+ SRREIGHG LA R Sbjct: 356 SLGTVTLGAPLDVQVLDTIFSDEEKRFMLHYNFPPFSTGEVKRLRGVSRREIGHGHLAER 415 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A ++P +FPYT+R+VS+I ES+GSSSMA+VC +SLALMDAGVPI K VAGIAMGL+ Sbjct: 416 AHKNLIPSDEEFPYTIRVVSDILESNGSSSMASVCSASLALMDAGVPIQKHVAGIAMGLI 475 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 + D+F++L+DI G EDHLG MDFKVAGT GITA QMD+K +++ ++ AL++AK Sbjct: 476 FENDNFVVLTDILGMEDHLGDMDFKVAGTRDGITAFQMDVKTSQVNKEVLQKALEKAKIA 535 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 RL IL++M + + + R +L + P +++ IP +I VIG GGK I+ I E +V I Sbjct: 536 RLKILDKMYETIPQPRKELSPYVPIMKVFKIPVSKIGEVIGPGGKNIKEISELYNVEVYI 595 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +DDG VK+ + +++ A I+++ E I++G V +V +G FV + G++ Sbjct: 596 EDDGKVKVTGHNANKVDEAINHIQNLIAQVEKGGIFEGTVKRVEKYGIFVEVLPGKVGML 655 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 H+S L + + K GD V V+++ +D+GK +L Sbjct: 656 HVSNLKDKL-----ESFKIGDKVKVEVMKVEDQGKFQL 688 >gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans DSM 18053] gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans DSM 18053] Length = 713 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 302/704 (42%), Positives = 440/704 (62%), Gaps = 15/704 (2%) Query: 1 MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 +F++ T I GR + +ETG++A+Q+DG+V+ G T++LATVV ++ +K+G DF PL Sbjct: 2 LFNIVTKTITLPDGREITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPL 61 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+YQE+ + G+IPG + RRE + +++E+L SR++DR +RPLF Y E QV I ++ Sbjct: 62 SVDYQEKFASAGRIPGSFQRREGKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQVNILLIS 121 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D E+ P ++ +AASAAL S +PF GPV +V I+G+YV+NP +LDL V Sbjct: 122 ADAEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINPGTTALANATLDLMV 181 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSK 235 T + + MVE E +++SE+ V++A+ H K A+ + K V D Sbjct: 182 GATYNDIAMVEGEMSEVSEEEVIEALKIAHEAIKTQCLALKEFEAAVGKTEKREYVGDPA 241 Query: 236 DFSKLEEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIV 292 D LE + + + + K VR + ++ + + E ++ +NEG Sbjct: 242 D-DALEARLREFAYGKIYAVTQLGSTNKTVRKDGFKAVWEEFKTTITEEEAAEFNEGLAK 300 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 F D+ + R ++LD++ R+DGR + VR I+++V L HGS+LF RG+TQ++ V Sbjct: 301 RYFNDLVWEASRRLVLDERKRLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTV 360 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT++DEQ VD+ + FM+HYNF +TGEV P RRE+GHG LA RA+ V Sbjct: 361 TLGTKQDEQIVDTPLKYGYSKFMLHYNFPGFSTGEVKPNRGPGRREVGHGNLALRALKKV 420 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470 LP PYT+RIVS+I ES+GSSSMATVC SLALMD+G+ I PV+GIAMGL+ D Sbjct: 421 LPAEGDNPYTIRIVSDILESNGSSSMATVCAGSLALMDSGLKIKAPVSGIAMGLISDEAT 480 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + +LSDI GDEDHLG MDFKV GT GITA QMDMK+ G+S ++ AL QAK GRLH Sbjct: 481 GKYAVLSDILGDEDHLGDMDFKVTGTAEGITACQMDMKVNGLSFEVLTEALMQAKAGRLH 540 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587 IL EM+K ++ESR L TPR ++ I + I VIG GGKV++ I +++GA ++I Sbjct: 541 ILGEMNKTITESRPDLKPHTPRAIVIKIDREMIGAVIGPGGKVVQDIQKESGATISIEEK 600 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G V I S+ + ++ A ++ I VPE+ +IY G+V +M FGAFV F +DGL+ Sbjct: 601 DGAGFVSIFSADKSSMDKAVARVKGIILVPEIGEIYSGKVKSIMPFGAFVEFLPGKDGLL 660 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ ER+ K V++ G+ V VKL++ D + GK +LS KV+ Sbjct: 661 HISEIKWERLEKMDGVLEVGEEVQVKLVEIDKKTGKYRLSRKVL 704 >gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM 4126] gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM 4126] Length = 713 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 288/702 (41%), Positives = 435/702 (61%), Gaps = 37/702 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V G+T++LATVV ++ ++G DF P++V+YQE+ + GK Sbjct: 16 GREISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSVDYQEKFASSGK 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+L+RE + ++ E+L SR++DR++RPLF Y ETQV+I + + P ++ + Sbjct: 76 IPGGFLKREGKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLFSLEENDLPDALAAL 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +PF GP+ +V +NG+ ++NP + ++ +D+ V+ T D ++MVE E Sbjct: 136 AASAALTASDIPFAGPISEVRVGRVNGEMIINPNSKQLEESDIDMIVAATIDNIMMVEGE 195 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +++AI F H K +A LAK K + ++++ EE +++ KE Sbjct: 196 LKEISEQEMVEAINFAHESIKLQCQAQLDLAKDAGK----TEKREYNHEEEPDAELEKE- 250 Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI---------- 298 I +KY + Q D+ K ++ + ++E G I S+ ED Sbjct: 251 ------IFDKYYQ--QFFDIAAKGLADKAERARLFSEIKDGYIDSLPEDTEISLSLAKSY 302 Query: 299 ----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 Q K VR L+ + R+DGR + +R I +++ L HGS++F RG+TQ++ VTL Sbjct: 303 LSAAQKKAVRNATLETRSRLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTL 362 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DEQ VD + N F++HYNF +TGE P RRE+GHG LA RA+ +LP Sbjct: 363 GTKLDEQMVDGAVHSGYNKFILHYNFPAFSTGEARPNRGPGRREVGHGNLALRALKQILP 422 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--D 472 + PYT+R+VS+I ES+GSSSMATVC SLALMDAG+PI PV+GIAMGL+ D + Sbjct: 423 TPDELPYTIRVVSDILESNGSSSMATVCAGSLALMDAGIPIKAPVSGIAMGLISDPETGK 482 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + ILSDI GDEDH+G MDFKV GT+ GITA QMD+K+ G+S +M+ AL QAK GR HI Sbjct: 483 YAILSDILGDEDHIGDMDFKVTGTEKGITACQMDIKVDGLSSELMMEALNQAKAGRDHIR 542 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590 NEMSK ++ R PRV + I + I VIG GGKV++ I + TGA V I++ Sbjct: 543 NEMSKTIAAPREDYKPNAPRVVNIEIDREMIGAVIGPGGKVVQEIQKTTGATVVIEETEK 602 Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G + + + + ++ A + I+ I PEV ++Y G V + +GAFV +DGL+HI Sbjct: 603 GGKINVFAVNKESLDQAVKWIKGIVAKPEVGEVYDGIVKAIQPYGAFVEIMPGKDGLLHI 662 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 S++ E++ +++ G+ V VKL+D D + GK++LS KV+ Sbjct: 663 SEIKHEKIDNLEGILEIGEEVKVKLIDIDKKTGKLRLSRKVL 704 >gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris AB-18-032] gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris AB-18-032] Length = 789 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 284/704 (40%), Positives = 423/704 (60%), Gaps = 33/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ + K+ DFFPLTV+ +ER YA Sbjct: 20 FGTREITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ ++ D + VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184 + AAS + LSGLPF GP+ ++ +++GQ+V P +E + + D+ V+G A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELSRATFDMVVAGRALADGDVA 199 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + + +V D + G KP I A S+LA++ AK Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D D + + ++Q + D+ + I K R + +D +K ++V E Sbjct: 260 PVFLDYSDDAY--DAVAQFARADVAEALQIAGKADREEALDAIKSRLVEELGPRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + F + VR +L ++VR+DGR +R ++A+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS + +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 LGVTTLNMLRMEQALDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R IL+ M + + E+ ++ ++ PRV + IP D+I VIG G+ I I ++TGA+ Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ + +++ +AA E I +I + +P+ + G VVK FGAF+ Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERINAIANPTMPKAGDRFLGTVVKTAPFGAFISLLPG 675 Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +RV K D + GD V V++ D D RGKI L Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDRVEVEIADIDQRGKIYL 719 >gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] Length = 729 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DGAV G TV+LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE + ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+G++V++P ++ +Q +DL V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFEQLEQADMDLMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H CK +E + ++ +E Sbjct: 185 ENIMMVEGEMDEVSEQDLLEALKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234 Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 EE + +++ + +C+ K+ R + + + FS E Sbjct: 235 YCHEENDEDLRKAVHEACYDKAYAIAQSGNKNKHEREDAFTAICDEFKAQFSEEELEEKG 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I + D++ + +R +LD+ R+DGR + +R I +V L HGS++F RG+TQ+ Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQS 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + VTLGT+ DE+ VD + + F++HYNF P +TGE RREIGHG LA RA Sbjct: 355 LSTVTLGTKADEKVVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + +P A +PY +R++S+I ES+GSSSMATVC +LALMDAGVPI PV+GIAMGL+K Sbjct: 415 LKGQIP--AGYPYCVRVMSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIK 472 Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K G++ +I+ AL QAK Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKE 532 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR +IL ++++ ++E R +L PR+E M IP + I VIG GGK+I+G+ E+TGA ++ Sbjct: 533 GREYILGKLTECIAEPRPELKPNAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAIIS 592 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 ID G ++IA ++ I+ A MI+SI +PE+ ++Y G+V +M +GAFV F + Sbjct: 593 IEEIDGVGRIEIAGTNKKCIDDAVRMIKSIVAIPEIGEVYTGKVRSIMPYGAFVEFLPGK 652 Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 DGL+HIS++ +R+ + +KEGD + VKL+D D + GK KLS KV+ Sbjct: 653 DGLLHISEIDWKRLETIEESGLKEGDEIQVKLMDIDPKTGKFKLSHKVL 701 >gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 697 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 265/680 (38%), Positives = 418/680 (61%), Gaps = 6/680 (0%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 AG+ + ++G +A Q++GAVLA +G+TV L+TV+ K DFFPLTV+Y+E++YAVG Sbjct: 14 AGKKVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVG 73 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 KIPGG+ ++E RPT+ EIL +R+IDRSIRP+F +NE QV+ ++ D+E+ P +V++ Sbjct: 74 KIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDIVAL 133 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190 +AAL +S +P + G +V YI+G+YVLNP E + LDL V+GT+D+++M+E Sbjct: 134 NGTAAALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGTRDSIVMIEA 193 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250 A ++ + +++ + F + +I+ I++L + + I F + + + + ++ Sbjct: 194 GAAEVDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSFPQEQLDFMRNHED 253 Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 R + P K R + + +LKK + +E +F +++ +VVR M Sbjct: 254 RFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGEVEKEVVRAYMKST 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 + R+DGR + +R + A+ +L + HGS LFIRG TQ + VTLG+ D Q++D++ + Sbjct: 314 RKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEE 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 FM Y+F P +TGEV PSRREIGHG L RA+ ++P FPYT+R+VSE+ Sbjct: 374 FKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEEVFPYTIRVVSEVL 433 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ES+GS+SMA+ C SS+ALM AGVP+++ V GIAMGL++ D+ ++L+DI G EDHLG MD Sbjct: 434 ESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTDIQGLEDHLGDMD 493 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKVAGT GITA+Q+D+K+ GIS + A+ QA+ R IL+ + + R L E Sbjct: 494 FKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDAIPSPR-PLSETA 552 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+ + IP D+I VIG GG+ ++ I ++TGA ++I +DG + + + A++ + Sbjct: 553 PRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKGLTDESVNMAKQQV 612 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT- 669 I PEV + +VV+V A V + GL+H+S++S R+ DV+ G T Sbjct: 613 EMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRIRSLEDVLSVGQTI 672 Query: 670 -VWVKLLDFDDRGKIKLSMK 688 VWVK + D G+++ S K Sbjct: 673 KVWVK--EKDGEGRLRFSAK 690 >gi|282858733|ref|ZP_06267886.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia JCVIHMP010] gi|282588482|gb|EFB93634.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia JCVIHMP010] Length = 748 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/702 (40%), Positives = 425/702 (60%), Gaps = 31/702 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 64 FPGGFTKREGKANDDEILTSRLVDRVLRPLFPADYHTEVYVQVMLLSADGIDQPDALAGF 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P E P+ +V ING+YV+NP + + +D+ V T+D ++MVE E Sbjct: 124 AASAALAASDIPIEYPISEVRVARINGEYVINPTFPQMKEADMDIMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMI 248 +++SE ++ A+ H KP+ E +L+K C K + D EE+ + + Sbjct: 184 MDEVSELDLIGALKAAHEAIKPMCELQEELSKECGTDVKREYCDEVND-----EELREQV 238 Query: 249 KEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE------ 296 +++ +C+ +K+ R + +K V F + H+ E+ E Sbjct: 239 RKETYDACYAQAQSGDNDKHHREEVYAQIKADFVEKFDAAHTELTADELAEKHEMIDRYY 298 Query: 297 -DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 D++ +R +LD RMDGR ++ +R I ++V L HGS+LF RG+T ++ TLG Sbjct: 299 ADVERDTMRRSVLDTGKRMDGRATDEIRHIWSEVDTLPMPHGSALFQRGETMSLSTCTLG 358 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 T+ DE+ VD++ F++HYNF P +TGE RREIGHG LA RA+ +P Sbjct: 359 TKMDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKNQIP- 417 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDF 473 FPYT+R+VS+I ES+GSSSMATVC +LAL+DAGVP+ KPV+GIAMGL+K+ D + Sbjct: 418 -TDFPYTVRLVSQILESNGSSSMATVCAGTLALLDAGVPMKKPVSGIAMGLIKNPGEDKY 476 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ILSDI GDEDHLG MDFK GT GITA QMD+K G+S I+ AL QAK GR HIL Sbjct: 477 AILSDILGDEDHLGDMDFKTTGTKDGITATQMDIKCDGLSYEILEKALMQAKAGREHILG 536 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDD 590 +M + +SE R ++ PR+E M IP + I +IG GGK+I+ + E TGA + I++ Sbjct: 537 KMMETMSEPREEMKPQVPRIEQMFIPKEFIGAIIGPGGKIIQQMQEDTGATITIEEIENQ 596 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G +++++ + I+AA I++I VPE+ +IY+G V +M +G FV +DGL+HIS Sbjct: 597 GKIQVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILPGKDGLLHIS 656 Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 ++ +R+ + +KEGD + VKLL+ D + GK KLS KV+ Sbjct: 657 EIDWKRLETVEEAGIKEGDKIQVKLLEIDQKTGKYKLSRKVL 698 >gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis F0319] gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis F0319] Length = 751 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 73 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGIDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P + P +V +NG+YV+NP ++ +DL V T+D ++MVE E Sbjct: 133 AASAALAASDIPIDYPTSEVRVARVNGEYVINPTFEQMKHADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V D +E++ + ++++ Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEDLREQVRKE 250 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298 +C+ +K R + + +K + + + H+ +E EI F D+ Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKSDFIEAYDAAHTDLSEDDLEEKHAEIERYFADV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I +V L HGS++F RG+T ++ TLGT+ Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGETMSLSTCTLGTKM 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA RA+ +P A Sbjct: 371 DEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN ++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 + ++E R ++ PR+ + IP + I VIG GGK+I+ I E+TGA + I++ G V Sbjct: 549 ETIAEPRQEMKPQVPRIIQLEIPKEFIGAVIGPGGKIIQQIQEETGATITIEETEGIGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I++I VPE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 609 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLLD D + GK KLS +V+ Sbjct: 669 WKRLETVEEAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707 >gi|332881702|ref|ZP_08449350.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680341|gb|EGJ53290.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 742 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 280/703 (39%), Positives = 430/703 (61%), Gaps = 33/703 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ T G T++LATV + G DF PL V Y+E+ A G+ Sbjct: 13 GRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKFAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL R++DR++RPLF Y E V + + D P ++ Sbjct: 73 FPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADGVDMPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PFEGP+ +V +NG+YV+NP + +Q +D+ V T++ ++MVE E Sbjct: 133 AASAALAVSDIPFEGPISEVRVARVNGEYVVNPTFAQLEQADMDIMVGATEENIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++E +L+A+ H KP+ +L K KE +++ E + ++E+ Sbjct: 193 MKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKEV----KREYC--HEVNDEDLREE 246 Query: 252 LRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------V 294 ++ +C+ +K+ R ++++ ++ H+ +E E+ Sbjct: 247 VKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAEKNALIDRY 306 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + D++ +R +LD+ R+DGR + +R I +V L HGS++F RG+TQ++ TL Sbjct: 307 YHDVERDAMRRCVLDEGKRLDGRATTDIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTL 366 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA R + +P Sbjct: 367 GTKLDEKIIDEVLDQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DD 472 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ + Sbjct: 427 --TDFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEEK 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL Sbjct: 485 YAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590 ++++ + R +L PR+ + IP + I VIG GGK+I+GI E+TGA + I++ Sbjct: 545 GKLTECMPAPRAELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEETGAVITIEETDG 604 Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V+++ ++ I+AA I+SI VPEV ++Y G + VM +GAFV F RDGL+HI Sbjct: 605 VGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMPGRDGLLHI 664 Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 S++ +R+ + +KEGD + VKL+D D + GK KLS +V+ Sbjct: 665 SEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVL 707 >gi|315606750|ref|ZP_07881760.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC 33574] gi|315251605|gb|EFU31584.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC 33574] Length = 780 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/700 (40%), Positives = 426/700 (60%), Gaps = 28/700 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKANDDEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ P+ +V + G+YV+NP + +DL V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFDYPISEVRVARVGGEYVINPTFQQMADADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++ A+ KP+ E +L+K + V D +EE+ + IK + Sbjct: 193 MKEVSEQDLIGALKVAAEAIKPMCELQEELSKELGTD--VKREYDHEVNDEELREQIKSE 250 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDIQ 299 L + EK+ R D + + + + + H+ +E E+ ++D+ Sbjct: 251 LYQPVYDVNKQALEKHARQDAFDKILEDFLEKYDAAHTELSEDELDEKHAEAHRYYDDVM 310 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ +R+DGR + +R I ++V L HGS+LF RG+T ++ TLGT+ D Sbjct: 311 RDAMRRCILDEGLRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLD 370 Query: 360 EQYVDS--LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 E+ VD + G QR F++HYNF P +TGE RRE+GHG LA R + +P A Sbjct: 371 EKLVDDVLMKGYQR--FLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLKDQIP--A 426 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFII 475 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + I Sbjct: 427 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAI 486 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN+M Sbjct: 487 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNKM 546 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592 + +SE R ++ PR+E IP + I VIG GGK+I+ + E TGA + ID+ G Sbjct: 547 METISEPRAEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDETDGVGK 606 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V++++ + I+AA IRSI +PEV ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 607 VQVSAPNKDAIDAAIAKIRSIVAIPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEI 666 Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKL++ D + GK KLS +V+ Sbjct: 667 DWKRLETVEEAGIKEGDKLKVKLMEIDPKTGKYKLSRRVL 706 >gi|331002061|ref|ZP_08325581.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411857|gb|EGG91262.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral taxon 107 str. F0167] Length = 700 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/704 (41%), Positives = 433/704 (61%), Gaps = 24/704 (3%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 + + +E AGR L+++ GR+A Q++GA L YGET VL+T ++G DFFPL+V Sbjct: 4 EFKSYSMELAGRTLRVDIGRVAAQANGAALMHYGETTVLSTATASDKPREGIDFFPLSVE 63 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D Sbjct: 64 YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDP 123 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVS 179 + SP + +M+ ++ A +S +PF+GP Q+ + G +V+NP +E+Q L L V+ Sbjct: 124 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNP--NEEQMAVSDLKLTVA 181 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+D V+M+E AN++ ++ +++AI + K +IE I K+ KE + FS Sbjct: 182 STRDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIEFIDKIVAEVGKEKHAYTA--FS- 238 Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292 + EE++ IKE ++ V+ F EK VR + I + +++ F ++ W GE + Sbjct: 239 IPEELTAAIKEIVPPQEMEVAVFTDEKQVREENIKAITQRLEEAF-ADKEEWLSLLGEAI 297 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + Q K VR ++L + R DGR +R ++A+ ++ R HGS++F RG TQ +V Sbjct: 298 YQY---QKKTVRKMILKDQKRPDGRAMNQIRTLAAETDIIPRVHGSAMFTRGQTQICNIV 354 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TL + Q +D L+ + +H YNF + GE P RREIGHG LA RA+ P Sbjct: 355 TLAPLSEAQKIDGLNLLETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIP 414 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469 VLP +FPY +R VSE ES+GS+SMA+ C S +ALM AGVPI + VAGI+ GLV Sbjct: 415 VLPTPEEFPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKRMVAGISCGLVTGDS 474 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 DD+++L+DI G ED G MDFKV GTD GITA+QMD+KI G++++I+ A+ + R Sbjct: 475 DDDYVLLTDIQGLEDFFGDMDFKVTGTDMGITAIQMDIKIHGLTQDIVKGAIAKCHEARD 534 Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 ILN M +SE R ++ ++ P++ + I P +I +V+G GK I I+E TG K++I Sbjct: 535 FILNTCMRPCISEPRKEISKYAPKIAQIQINPSKIGDVVGKQGKTINKIIEDTGVKIDIS 594 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++G V +A + A I+ A ++IR IT E I +G VV++++FGAFV +DG+VH Sbjct: 595 EEGLVSVAGTDQAMIDKAIDIIRGITIEIEAGMIMRGTVVRMLEFGAFVELAPGKDGMVH 654 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 IS+LS +RV K DVVK G+ V VK++ D +G+I LSMK D Sbjct: 655 ISKLSDKRVEKVEDVVKVGNEVTVKVIKVDPMKGRIDLSMKTSD 698 >gi|254525392|ref|ZP_05137444.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus marinus str. MIT 9202] gi|221536816|gb|EEE39269.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus marinus str. MIT 9202] Length = 691 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 275/667 (41%), Positives = 405/667 (60%), Gaps = 39/667 (5%) Query: 55 DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114 DF PL +Y+E+ YA G+IPGG++RRE RP E LI+R+IDR +RPLF ++E Q++ Sbjct: 23 DFLPLICDYEEKLYAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPSWMRDEIQIV 82 Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173 + + D V+++ AS A +L +PF GP+ +V I ++LNP E ++G Sbjct: 83 ASCLSLDERVPADVLAVTGASLATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGD 142 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---------------- 217 LD+ ++GT D ++M+E ANQLSE ++AI FG+ +I++ Sbjct: 143 LDIVIAGTPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQDDLLKDLGIKQIKPS 202 Query: 218 --------ISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269 S L K C K PI + K F L +E + E ++V + + + D Sbjct: 203 DPEEDKTLSSYLEKNCTK-PIELVLKKFD-LSKEDRDLELEKIKVET---QGKIESLKDD 257 Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329 D K ++S ++ + S F+ + K++R+ +++ R+DGRD + VR ISA Sbjct: 258 DQLKVLLS--------EDDKLLSSDFKKLTKKLMRSQIINDNKRVDGRDLDEVRKISAFA 309 Query: 330 GLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388 G+L +R HGS+LF RG TQ + TLGT D Q +D L+ + ++ HYNF P + GE Sbjct: 310 GILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGET 369 Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448 M P RREIGHG LA RAI PVLP FPY LR+VSE+ S+GS+SM +VCGS+L+L Sbjct: 370 RPMRTPGRREIGHGALAERAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSL 429 Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508 +DAGVP+ PV+G AMGL+K+G + IL+DI G ED LG MDFKVAGTD GITA+QMDMK Sbjct: 430 LDAGVPLKAPVSGTAMGLIKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMK 489 Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 I G+ +I+ A+++A+ RLHIL +M + +++ + L PR+ I P+ I VIG Sbjct: 490 ITGLPVSIISDAIKKARPARLHILEKMQEAINKPQESLSPHAPRLLSFRIDPELIGTVIG 549 Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628 GG+ I+GI E+T K++I+D G V IAS A E A+++I +T +I+ G V Sbjct: 550 PGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVT 609 Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +++ GAFV ++G+VHISQLS RV + DVV++GD V V++ + D RG+I L+++ Sbjct: 610 RIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLR 669 Query: 689 VVDQNTG 695 V QN+G Sbjct: 670 GVGQNSG 676 >gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae PB189-T1-4] gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae PB189-T1-4] Length = 760 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/697 (41%), Positives = 425/697 (60%), Gaps = 28/697 (4%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 + E + + KLETG +A+Q+ G L + G++ V TVV + KD DFFPLTV++ E Sbjct: 5 SYEFDLYDKHYKLETGELAKQATGECLVSCGDSTVNVTVVVSKERKD-YDFFPLTVDFIE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YAVG+IPGGYL+RESRPTE L +RMIDR IRP F ++NE Q++ + D + Sbjct: 64 KMYAVGRIPGGYLKRESRPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQFNP 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182 + ++ AS A+ G+PFEGP+ ++ + G++++NP +E + S LDL ++G+ Sbjct: 124 VDTICVMGASCAMRTGGVPFEGPLACVRIGRNTQTGEFIVNPTYEERKHSDLDLELAGSA 183 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAK---------EP 229 + M+E A ++SE+ +L A+ FG C + +K+A++ EP Sbjct: 184 TFISMLEAAAQEISEEDMLSAMAFGQQAIAAFCAEQEKFFAKVAEVNGPIEEHTYELDEP 243 Query: 230 I-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 I + ++ F+ +E MS +K+D +K R ++++ LK +V F+ E Sbjct: 244 IEALHNRVFAHFDE-MSAALKDD--------DKLHRIEKVEKLKAAIVDEFTEEEQEEWA 294 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 + + + ++ +R ++++ R+DGR + VR + + L HGS LF RG TQ Sbjct: 295 VALPAELKSLEKHAMRLMVVETGERVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQV 354 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TLG + Q +D++ + +M HYNF P TGE R+G+P RREIGHG LA RA Sbjct: 355 LSVATLGMLSEWQRLDTIEPQEGKRYMHHYNFPPYCTGETGRLGSPKRREIGHGNLAERA 414 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PV+P +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL++ Sbjct: 415 LLPVIPSEDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIVRPVSGVAMGLIQ 474 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + ++L+DI G ED LG MDFKV GT GITAMQMD K G++ I+ ALQQA GR Sbjct: 475 EEGKTVVLTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALQQAHVGR 534 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 + IL+ M + R E P++ + IP D IR+VIG GGKVIR I ++TGA V I Sbjct: 535 MEILDAMLAQIPVPRAHTKETAPKIISIKIPVDTIRDVIGSGGKVIRSIQDETGATVEIQ 594 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 +DG+V IA A +AA + I I VPEV + Y G+VV + FGAFV +DGL+H Sbjct: 595 EDGSVFIAGVGEA-AQAAADRINMIIKVPEVGEEYHGRVVGLQPFGAFVELLPGKDGLLH 653 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 IS+++ RV K DV+ GD V V +L+ DD+GKI L Sbjct: 654 ISRVAQGRVEKIEDVLSIGDEVNVVVLEVDDKGKISL 690 >gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL 8301] Length = 747 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/692 (41%), Positives = 427/692 (61%), Gaps = 16/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR +++ETG++A+Q+DG+V+ G+T++L TVV + K DF PL V Y+E+ AVG+ Sbjct: 19 GRQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAAVGR 78 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+++RE+R ++E+L++R+IDR++RPLF Y E V +N++ D + P ++ + Sbjct: 79 FPGGFMKREARANDSEVLVARLIDRALRPLFPADYHAEVYVTVNLISADKDIQPDALAGL 138 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V NG+Y +NP E + LD+ V GT D +LMVE E Sbjct: 139 AASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECDLDIMVGGTIDNILMVEGE 198 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE+V+L AI F H E K +L+K K+ V + +EE+ Q I + Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEVNDEELRQTIIRE 256 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305 L + K+ R + + L+ + + +S E I F +D+Q K +R Sbjct: 257 LYDKAYAIATSGTMKHEREDKFNALEAEFAARYSEEELIEKAPLIHKYFHDDVQKKAMRN 316 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD+ VR+DGR ++ +R I +VG L HGS++F RG+TQ++ VTLGT+ DE+ D Sbjct: 317 MILDEGVRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDE 376 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + F++HYNF P +TGE SRREIGHG LA RA+ P++P PY +R+ Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMIPLGEDNPYAVRV 436 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483 VS+I ES+GSSSMATVC +LALMDAGV + KPV+GIAMGL+ D + + +LSDI GDE Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAMGLISDSETGKWAVLSDILGDE 496 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT GITA QMD+K+ G+S ++ AL+QA++GR+HIL ++++ ++E R Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRMHILGKLTECIAEPR 556 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600 PR+ + IP D I VIG GGKVI+ I + T +D+ G V I Sbjct: 557 EDYKPCVPRIVQIVIPQDMIGPVIGPGGKVIQDIQKTTNTTITITEVDNKGIVDIFGIDK 616 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ A I++I +PEV + Y G+V ++ FGAFV +D L+HIS++ +R Sbjct: 617 EALDGALARIKAIVAIPEVGETYHGKVRSIVAFGAFVEIMPGKDALLHISEIDYKRFETM 676 Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGD + VKL+ D + K+KLS K + Sbjct: 677 EETGLKEGDEIDVKLIGVDPKTNKLKLSRKAL 708 >gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] Length = 735 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/705 (40%), Positives = 431/705 (61%), Gaps = 27/705 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+ Q+V+NP ++ ++ +DL V T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINPTFEQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 + ++MVE E +++SE +L+A+ H +CK +E ++ +E Sbjct: 185 ENIMMVEGEMSEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKREYC------HE 238 Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 +EE+ + + + + K+ R D + ++ + FS E + I Sbjct: 239 VNDEELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAICEEFKAQFSEEELAEKAALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I + L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ + Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476 Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + +LSDI GDEDHLG MDFKV GT GITA QMD+K G++ +I+ AL QAK GR Sbjct: 477 AKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKCDGLTYDILEKALLQAKEGREF 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++++ ++E R L PR+E M IP + I +IG GGK+I+G+ E+TGA + I Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ G ++IA ++ I+ A MI+ I VPEV ++YKG+V +M +GAFV F +DGL+ Sbjct: 597 DNVGRIEIAGTNKQCIDDAMRMIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++ +R+ + +KEGD + VKLL+ D + GK KLS KV+ Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLLEVDPKTGKFKLSRKVL 701 >gi|300727487|ref|ZP_07060878.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14] gi|299775190|gb|EFI71791.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14] Length = 739 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 283/698 (40%), Positives = 430/698 (61%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTITIETGKVAKQADGSAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ E+L SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 64 FPGGFTKREGKASDEEVLTSRLVDRALRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGF 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ + +V ING++V+NP + ++ +DL V T+D ++MVE E Sbjct: 124 AASAAMACSDIPFDYTISEVRVARINGEFVINPTFQQMEEADMDLMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +++A+ H KP+ + +LAK + V D +EE+ Q IK++ Sbjct: 184 MKEVSELDLINALKAAHEAIKPMCDLQDELAKELGTD--VKREYDDEINDEELRQQIKDE 241 Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----------GEIVSVFEDIQ 299 L + I K + ++ +D K+++ F ++ + +E E ++D+ Sbjct: 242 LYQPAYDINHKALPKQERNDSFDKLLADFLEKYDAAHEDLSADDLEEKHAEAKRYYDDVL 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ +R+DGR + +R I +V L HGS++F RG+T ++ TLGT+ D Sbjct: 302 RDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ VD + F++HYNF P +TGE RREIGHG LA RA+ +P A + Sbjct: 362 EKLVDGVLNRSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKDQIP--ADY 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS++ ES+GSSSMAT C +LALMDAGVPI KPV+GIAMGL+K+ D + ILS Sbjct: 420 PYTVRLVSQVLESNGSSSMATTCAGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAILS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILNEM K Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNEMMK 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594 +SE R +L PR+E+ IP + I VIG GGK+I+ + E+TGA + I++ G V+ Sbjct: 540 TISEPRAELKPQVPRIEVFDIPKEFIGAVIGPGGKIIQQMQEETGATITIEETEGKGHVQ 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I+AA IR+I VPEV ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 VSAPNKESIDAALLKIRAIVAVPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 659 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKL++ D + GK KLS + + Sbjct: 660 KRLETVEEAGLKEGDKIQVKLMEIDPKTGKYKLSRRAL 697 >gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] Length = 777 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/692 (41%), Positives = 434/692 (62%), Gaps = 22/692 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A Q+DG+V+ G T++ A D+ + GQDFFPL+V+YQE+ + G+ Sbjct: 16 GREVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEARAGQDFFPLSVDYQEKFASSGR 75 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE++ ++ EIL SR++DR+IRPLF Y N+TQ++IN++ + P + Sbjct: 76 IPGNFFRRETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIMINLISVEKNEMPDAFVAL 135 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF+GP+ +V ING++V+NP + +DL V+ T + MVE E Sbjct: 136 AASAALSVSDIPFQGPISEVRVARINGEFVINPGKEALKTADIDLIVAATLQDITMVEGE 195 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE------MS 245 A ++ E+ ++DA+ H K A LA++ + ++ ++ L E+ + Sbjct: 196 AKEMDEESMIDALRIAHEAIKVQCHAQIALAQLVGDKALI--KREVPPLPEDEGVLEKLK 253 Query: 246 QMIKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGE--IVSVFEDIQA 300 +++ + +R V+ EK R K+ +++KK+ + + +W E + F+ ++ Sbjct: 254 ELVVDKIRAVASSASEKNARKKKFEEVKKEAEVEMALAYGEEAWPEKKPFFKRYFDVLKK 313 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K +R V+LD +R+DGR +R I ++V L THGS++F RG+TQA+ +TLGT+ DE Sbjct: 314 KTIREVILDG-IRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSLTLGTKTDE 372 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +D+ F++HYNF + GEV P RRE+GH LA R++ V+P A P Sbjct: 373 QMIDNSQEMYHEKFILHYNFPGYSVGEVKPSRGPGRREVGHANLAARSLRKVMP--ADLP 430 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YT+RIVS+I ES+GSSSMATVC +LALMDAG+ I PV+GIAMG++K+GD ILSDI Sbjct: 431 YTVRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDRVAILSDIL 490 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDED LG MDFKV GT++GIT QMD+KI G+ +++V AL QA+ GRLHILNEM K + Sbjct: 491 GDEDALGDMDFKVTGTENGITGCQMDIKIDGLPYDLLVRALSQAREGRLHILNEMKKTIE 550 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597 R PR+ + I I VIG GGKVI+ I TG ++NI+ D G V IAS Sbjct: 551 VPREDYKPHAPRIVEIIIDKSFIGAVIGPGGKVIQEIQASTGTQINIEEKGDKGHVTIAS 610 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 S+ I++A E + IT P V +++G V VM +G FV F G + GL+H+S++S R+ Sbjct: 611 SNKDAIDSAIEWVNRITFNPTVGDVFRGVVKSVMPYGVFVDFNG-KSGLLHVSEISHTRI 669 Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688 DV+KEGD + V+L++ D + GK++LS K Sbjct: 670 DNVEDVLKEGDEIKVQLVEVDKKTGKMRLSRK 701 >gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM 16973] gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM 16973] Length = 780 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/699 (39%), Positives = 424/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETGR+A+Q+DG+V+ G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRSISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P++NEIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKPSDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSADGIDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ + +V +NG+YV+NP ++ + +D+ V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSEQMKEADMDIMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +++A+ H P+ + +L+K + V D +EE+ + +D Sbjct: 193 MKEVSEQDLIEALKVAHQAIIPMCDVQEELSKELGTD--VKREYDHETNDEELRAQLHKD 250 Query: 252 LRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDI 298 C+ +K R + D +K + + + H+ +E E+ ++D+ Sbjct: 251 TYDKCYAIALAGDHDKKTRGEAFDKIKADFLETYDAAHTELSEDELEEKHAMVDRYYDDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+TQ++ TLGT+ Sbjct: 311 MRDSMRRCILDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLTTCTLGTKL 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ +D + F++HYNF P TGE + RREIGHG LA R + +P A Sbjct: 371 DEKMIDDVLDKSYQRFILHYNFPPFCTGEARPQRSVGRREIGHGHLAWRGLKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 +PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 429 YPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL +++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEEALMQAKAGREHILGKIT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593 + ++E R +L PR+ IP + I VIG GGK+I+ + E TG + ID+ G V Sbjct: 549 ETIAEPRAELKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEIDGKGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ I+AA E I++I +PE+ +IY+G V +M +G FV +DGL+HIS++ Sbjct: 609 QVSAPDKESIDAALEKIKAIVAIPEIGEIYEGTVRSIMPYGCFVEIMPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 R+ D +KEGD + VKL+D D + GK KLS +V+ Sbjct: 669 WRRLETVEDAGIKEGDKIRVKLMDIDPKTGKYKLSRRVL 707 >gi|317504248|ref|ZP_07962238.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM 15606] gi|315664618|gb|EFV04295.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM 15606] Length = 757 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/698 (40%), Positives = 420/698 (60%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++NEIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PFE + +V ING++V++P + +DL V+ T+D ++MVE E Sbjct: 133 AASAAMACSDIPFEYAISEVRVARINGEFVIDPTFQQMADADMDLMVAATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++DA+ KP+ E +L+K V D +EE+ + IK + Sbjct: 193 MKEVSEQDLIDALKAASEAIKPMCELQEELSKELGTN--VKREYDHEINDEELREQIKNE 250 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299 L + EK+ R D + + + + HS +E E +ED+ Sbjct: 251 LYQPVYDVNKQALEKHARHDAFDKILADFLEKYDAAHSDLSEEDLEEKHAEATRYYEDVM 310 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ R+DGR + +R I +V L HGS++F RG+T ++ TLGT+ D Sbjct: 311 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 370 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ VD + F++HYNF P +TGE RREIGHG LA R + +P+ + Sbjct: 371 EKMVDDVMEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 428 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + ILS Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN M + Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 548 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594 +SE R +L PR+E IP + I +IG GGK+I+ + E+TGA + ID+ G V Sbjct: 549 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATITIDEADGKGHVT 608 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I+AA I++I VPEV ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 609 VSAPNKESIDAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGKDGLLHISEIDW 668 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD V VKL++ D + GK KLS +V+ Sbjct: 669 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 706 >gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis M50/1] Length = 697 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 416/694 (59%), Gaps = 23/694 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+ Q++GA L YGET VL+T +DG DFFPL+V Y+E+ Y Sbjct: 7 MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D E P V Sbjct: 67 AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187 V+M+ ++ A+ +S +PF GP Q+ ++G++++NP D G L L V+ T + V+M Sbjct: 127 VAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAEKVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E+ +++AI H+ + +I I+ + + K S + EEM Sbjct: 187 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 243 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E + + F EK R + I ++ K+ F +++ W GE V + Q Sbjct: 244 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 299 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 300 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 359 Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 Q +D L T+R ++ YNF + GE P RREIGHG LA +A+ VLP Sbjct: 360 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 417 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475 +FPY +R VSE ES+GS+SMA+ C S ++LM AGVP+ VAGI+ GLV DD+++ Sbjct: 418 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 477 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534 L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ +A+ R++I++E Sbjct: 478 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 537 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 MSK + E R ++ F P++ + I PD+I +V+G GK I I+++TG K++I DDG V Sbjct: 538 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 597 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + + A EMI+ IT +I+ G VV + +FGAFV F ++G+VHIS++S Sbjct: 598 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 657 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ER+ + DV+ GD V V L D G+I SMK Sbjct: 658 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 691 >gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC 35310] gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC 35310] Length = 778 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P++NEIL SR++DR++RPLF Y E V I ++ D P ++ + Sbjct: 73 FPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSADGVDQPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ + +V ING+YV+NP ++ Q +DL V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFDFYISEVRVARINGEYVINPTFEQMKQADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE +++A+ H KP+ +L K K+ V D +E++ + + + Sbjct: 193 MKEVSELDLINALKAAHEAIKPMCAVQDELNKELGKD--VKREYDHEVNDEDLREKMNNE 250 Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWN------------EGEIVSVFEDI 298 L + I ++ + ++ D K+++ F E+ + + E ++D+ Sbjct: 251 LYQPVYDITKQALPKQERHDAFDKVLADFLEEYDAAHAADLTEEELEEKHAEATRYYDDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+TQ++ TLGT+ Sbjct: 311 LKNAMRRCVLDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKL 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD + F++HYNF P +TGE RREIGHG LA R + LP Sbjct: 371 DEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQLPD--D 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN+M Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALLQAKAGREHILNKML 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTV 593 + ++E R ++ PR+E IP + I VIG GGK+I+ + E TGA + I D+ G + Sbjct: 549 ETIAEPRPEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDNVGKI 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I+SI +PEV +IY+G V +M +G FV +DGL+HIS++ Sbjct: 609 QVSAPNKESIDAAIAKIKSIVAIPEVGEIYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ D + EGD + VKLL+ D + GK KLS +V+ Sbjct: 669 WKRLETVEDAGIHEGDKIRVKLLEIDPKTGKYKLSRRVL 707 >gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows witches'-broom phytoplasma AYWB] gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 715 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 284/696 (40%), Positives = 422/696 (60%), Gaps = 37/696 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 ++E G AR D ++L Y +TVVL T+V+ R + DF PLTV YQE+ YA GKIPG Sbjct: 15 FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 +LRRE R ++EIL SR+IDRS+RPLF ++ E QVI V+ D + + SM+ +S Sbjct: 74 SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 +L++S +PF + G V IN ++++NP L + +L L V+GT+ V M+E AN+ Sbjct: 134 LSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVI---EAIS------KLAKMCAKEPIVIDSKDFSKLEEEMS 245 +SE L+AI F H K + E I K+ K + + F+K ++ Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQVK 253 Query: 246 QMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVFE 296 Q I +SC + K QI D K+ ++ F E + ++F+ Sbjct: 254 QAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLFQ 308 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + + +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++ VTLG Sbjct: 309 KLSKQEMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGC 368 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + +D LS Q FM+HYNF P + G V R APSRREIGHG LA +AI VLP+ Sbjct: 369 LSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEE 428 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474 FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV D + ++ Sbjct: 429 KDFPYTIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKYV 488 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI I+ A QAK+GRLHIL + Sbjct: 489 ILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQ 548 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTV 593 M++ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I I+E G K++I+ DG V Sbjct: 549 MNQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLV 647 + S+L ++ I S+ +V Y+ +++ + GA C +GL+ Sbjct: 609 FVMHSNLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLI 668 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 H++++ + K +DV+K G+TV VK ++RG+I Sbjct: 669 HVNKM---KFQKITDVLKIGETVLVKCTKINERGRI 701 >gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis L1-82] gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis L1-82] Length = 719 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 416/694 (59%), Gaps = 23/694 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+ Q++GA L YGET VL+T +DG DFFPL+V Y+E+ Y Sbjct: 29 MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 88 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D E P V Sbjct: 89 AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 148 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187 V+M+ ++ A+ +S +PF GP Q+ ++G++++NP D G L L V+ T + V+M Sbjct: 149 VAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAEKVIM 208 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E+ +++AI H+ + +I I+ + + K S + EEM Sbjct: 209 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 265 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E + + F EK R + I ++ K+ F +++ W GE V + Q Sbjct: 266 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 321 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 322 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 381 Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 Q +D L T+R ++ YNF + GE P RREIGHG LA +A+ VLP Sbjct: 382 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475 +FPY +R VSE ES+GS+SMA+ C S ++LM AGVP+ VAGI+ GLV DD+++ Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534 L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ +A+ R++I++E Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 MSK + E R ++ F P++ + I PD+I +V+G GK I I+++TG K++I DDG V Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + + A EMI+ IT +I+ G VV + +FGAFV F ++G+VHIS++S Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ER+ + DV+ GD V V L D G+I SMK Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 713 >gi|294790571|ref|ZP_06755729.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata F0304] gi|294458468|gb|EFG26821.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata F0304] Length = 953 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/719 (41%), Positives = 431/719 (59%), Gaps = 47/719 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ Y Sbjct: 17 DFGKRVLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENFDFFPLTVDVEEKMY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + S + Sbjct: 77 AAGKIPGSFFRREGRPSNEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSISPDDSYDM 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182 ++M AASA+ M+SGLPFEGPV G ++ I+ Q+V PR E ++ +L V+G Sbjct: 137 IAMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPRWSERERAVFELVVAGRVLDNGD 196 Query: 183 DAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEP 229 A+ M+E A + + ++ D + G KP I EA ++L K AKE Sbjct: 197 VAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKTICEAQNELKKAAAKE- 255 Query: 230 IVIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 +KDF E + Q+ DL + I EK R +I +K+ +V ++E Sbjct: 256 ----TKDFPLFPEYTEDLYNRIDQIAHSDLNDALSIAEKLPRQDRIAQIKQGVVDTLAAE 311 Query: 283 HSSWN----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 + + E EI + F+++Q ++VRT +L + R+DGR +R +SA+V ++ R HGS Sbjct: 312 FTDMDDAEKEKEIGNAFKELQRQIVRTRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGS 371 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + V TL + EQ D+LSG +M +Y P +TGE R+G+P RRE Sbjct: 372 ALFQRGETQILGVTTLNMLKMEQTTDALSGPSTKRYMHNYEMPPYSTGETGRVGSPKRRE 431 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 +GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+DAGVP+ P Sbjct: 432 VGHGALAERALIPVLPSREKFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAP 491 Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGLV + + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI Sbjct: 492 VAGIAMGLVSGEVNGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPA 551 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 +I+ AL+QA R IL +++ + + ++ + PR+ M +P D+I +IG GK+I Sbjct: 552 DILAAALRQAYEARTTILEVINECI-DGVNEMSPYAPRIISMTVPVDKIGEIIGPKGKMI 610 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+V I+DDGTV IAS E AR++I I + +PE + Y+G+VVK Sbjct: 611 NEIQEKTGAEVTIEDDGTVYIASEGGNAAEEARKLIDQIANPHIPEEGEKYQGKVVKTTS 670 Query: 633 FGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 FGAFV+ DGL+HISQ+ +R+ DV++EGDTV V + DD+GKI L++ Sbjct: 671 FGAFVNLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729 >gi|330997766|ref|ZP_08321601.1| polyribonucleotide nucleotidyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329569654|gb|EGG51419.1| polyribonucleotide nucleotidyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 742 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 280/703 (39%), Positives = 430/703 (61%), Gaps = 33/703 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV+ T G T++LATV + G DF PL V Y+E+ A G+ Sbjct: 13 GRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKFAAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL R++DR++RPLF Y E V + + D P ++ Sbjct: 73 FPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADGVDMPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PFEGP+ +V ING+YV+NP + +Q +D+ V T++ ++MVE E Sbjct: 133 AASAALAVSDIPFEGPISEVRVARINGEYVVNPTFAQLEQADMDIMVGATEENIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++E +L+A+ H KP+ +L K KE +++ E + ++E+ Sbjct: 193 MKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKEV----KREYC--HEVNDEDLREE 246 Query: 252 LRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------V 294 ++ +C+ +K+ R ++++ ++ H+ +E E+ Sbjct: 247 VKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAEKNTLIDRY 306 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 + D++ +R +LD+ R+DGR + +R I +V L HGS++F RG+TQ++ TL Sbjct: 307 YHDVERDAMRRCVLDEGKRLDGRATTEIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTL 366 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 GT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA R + +P Sbjct: 367 GTKLDEKIIDEVLEQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DD 472 + FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ + Sbjct: 427 E--DFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEEK 484 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +LSDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL Sbjct: 485 YAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590 ++++ + R +L PR+ + IP + I VIG GGK+I+GI E TG+ + I++ Sbjct: 545 GKLTECMPAPRPELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEDTGSVITIEETDG 604 Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G V+++ ++ I+AA I+SI VPEV ++Y G + VM +GAFV F RDGL+HI Sbjct: 605 VGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMPGRDGLLHI 664 Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 S++ +R+ + +KEGD + VKL+D D + GK KLS +V+ Sbjct: 665 SEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVL 707 >gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma mali] gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma mali] Length = 728 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 279/712 (39%), Positives = 438/712 (61%), Gaps = 32/712 (4%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 EI + L++E G I+RQ++G+V+ Y +TV+L+ V K+ +F PLTVNYQE+ Sbjct: 14 EIIFENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK-KNSLNFLPLTVNYQEKL 72 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+LRRE +P++ EIL SR+IDR+IRPLFSK +KNE Q+I V+ D + + Sbjct: 73 YAAGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDPDGNNE 132 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 ++++ +S AL++S +PF PV V I ++NP L + + S L ++GT+D++ Sbjct: 133 NIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGTKDSLN 192 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE---- 242 MVE+ + ++SE+ L++I FGH K + +++A K I I + + L E Sbjct: 193 MVEMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLLEVEIK 252 Query: 243 -----EMSQMIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVS-------YFSSEHSSWN 287 E+ ++K V+ K ++ +++ K+K ++ E+ Sbjct: 253 DKYFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNNKKDNFNLLDLENQKLY 312 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E+ +F+ + ++R +L + +R DGR+S +R I++++ +L RTHGS+LF RG TQ Sbjct: 313 LNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQ 372 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 ++ +VTLGT + + +D LS FM+HYNF A G V R APSRREIGHG LA + Sbjct: 373 SLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHGMLAEK 432 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ VLP FPY++R+VSEI +S+GSSS AT+C SS+ALM AGVP+ VAG+AMGL+ Sbjct: 433 ALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGLI 492 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D D + ILSDI G ED+ G +DFK+AGT GITA+Q+D+KI GI+ I L+Q Sbjct: 493 VDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFEKVLEQ 552 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-TG 582 AK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG GGK+I I+E+ Sbjct: 553 AKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQIIEKHDN 612 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV----MD--FGAF 636 K++I DG + I ++ ++ I++ +V +Y+ ++++ MD FGA Sbjct: 613 VKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDKTFGAI 672 Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +G +HIS+L +V K DV+K G + VK + ++RG+I LS K Sbjct: 673 AEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKK 724 >gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC 27560] gi|149733986|gb|EDM50105.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC 27560] Length = 688 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 271/692 (39%), Positives = 417/692 (60%), Gaps = 19/692 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+A+Q++GA YG+T VL+T ++G DFFPL+V ++E+ Y Sbjct: 1 MELAGRTLTVDVGRVAKQANGAAFMHYGDTTVLSTATASDKPREGVDFFPLSVEFEEKMY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + VM D E P + Sbjct: 61 SVGKIPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVSLNNLVMSVDPECRPEL 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187 V+M+ ++ + +S +PF+GP QV ++G++V+NP + D G L L V+ T+ V+M Sbjct: 121 VAMLGSAISTCISDIPFDGPCAMTQVGMVDGEFVVNPSQAVWDNGDLQLTVASTKQKVIM 180 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN + E +++AI H+ + +IE I K+ KE +S + EE+ Sbjct: 181 IEAGANIIPEAKMIEAIYMAHDINQTIIEFIEKIVAEVGKEKHTYES---CAIPEELFAA 237 Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IKE ++ V+ F +K R I ++ +K+ F +++ W GE + + Q Sbjct: 238 IKEIVPPAEMEVAVFTDDKQTREANIKEITEKLEEAF-ADNEEWLAVLGEAIYQY---QK 293 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR + +R ++A+V ++ R HGS++F RG TQ V TL + Sbjct: 294 KTVRKMILKDHKRPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQICNVCTLAPLSEA 353 Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 Q +D L + +M HYNF + GE P RREIGHG LA +A+ PVLP +F Sbjct: 354 QKIDGLDENVKTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALMPVLPSEEEF 413 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477 PY +R VSE ES+GS+SMA+ C S ++LM AGVPI VAGI+ GLV + DD+++L+ Sbjct: 414 PYAIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKSMVAGISCGLVTGETDDDYVLLT 473 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536 DI G ED G MDFKV GT GITA+QMD+KI G++ +I+ A+ + + RL I++ M Sbjct: 474 DIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRDIVEGAIARTREARLFIMDTCMK 533 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 ++E R ++ + P++E + I PD+I +V+G GKVI I+E+TG K++I D+G V + Sbjct: 534 PAIAEPRKEVNAYAPKIETIQINPDKIGDVVGKSGKVINAIIEETGVKIDISDEGMVSVC 593 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 I+ A + I++I E I +G VV + +FGAF+ F ++G+VHIS+++ ER Sbjct: 594 GVDKDMIDKALKYIKTIVTDFEEGMILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKER 653 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V D + GD V K L D G+I S+K Sbjct: 654 VEHVEDYLTLGDKVKCKCLGKDKMGRISFSIK 685 >gi|229829166|ref|ZP_04455235.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM 14600] gi|229792329|gb|EEP28443.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM 14600] Length = 710 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/699 (39%), Positives = 420/699 (60%), Gaps = 17/699 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 + T +E AGR L++E G++A+Q++GAV+ YGET +L T ++G DFFPL+V + Sbjct: 15 MKTFRMELAGRELQIEVGKVAKQANGAVMIRYGETTLLCTATASEKPREGIDFFPLSVEF 74 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ Y+VGK PGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+ + V+ D Sbjct: 75 EEKYYSVGKFPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPS 134 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQ 182 P +V+M+ + A +S +PF+GP QV ING ++NP + D D G L L V+ T+ Sbjct: 135 CRPELVAMIGTAMATAISDIPFDGPCAMTQVGMINGDLLINPSQSDWDNGDLRLTVASTR 194 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237 D V+M+E AN+LS+ +++AI H+ + +I I ++ K E + ID + F Sbjct: 195 DKVIMIEAGANELSDQEMIEAIYKAHDVNQTIIALIDQMVAEVGKAKHDYEHVAIDRQMF 254 Query: 238 SKLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 EEM +++ + + + F EK VR + I + +++ F+ + S Sbjct: 255 ----EEMKKIVTPKQMEEAVFSDEKQVREENIRRVTERLAEAFADREDYL--AVLDSAVY 308 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 Q K VR ++L R DGR + +R +SA+V L+ R HGS++F RG TQ +VTL Sbjct: 309 QYQKKTVRKMILKDHRRPDGRALDQIRPLSAEVDLIPRVHGSAMFTRGQTQICNIVTLAP 368 Query: 357 REDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q V+ L N +H YNF + GE P RREIGHG LA RA+ PVLP Sbjct: 369 LSEVQRVEGLDANVTNKRYIHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPT 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDF 473 FPY +R VSE ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV +D DD+ Sbjct: 429 VEDFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGEDDDDY 488 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL- 532 ++L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+++ RL I+ Sbjct: 489 VLLTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRTIVEEAIRRTHEARLFIMD 548 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 N MSK + R +L ++ P++ + I P +I +V+G GK I I+++TGAK++ID+ G Sbjct: 549 NCMSKAIDRPRAELSKYAPKIVQIQIDPSKIGDVVGQRGKTINEIIDRTGAKIDIDESGA 608 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V +++ A I+ A ++ IT E + G+VV + +FGAF+ F ++G+VHIS++ Sbjct: 609 VSVSAMDQAAIDEAVRLVEIITMDFEKGQHLTGKVVSIKEFGAFIEFAPGKEGMVHISRI 668 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 + +R+ + DV+ GD V V + D G++ SMK D Sbjct: 669 ANQRIDRVEDVLTLGDIVEVVCMGKDKMGRMSFSMKSSD 707 >gi|297243010|ref|ZP_06926948.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis AMD] gi|296889221|gb|EFH27955.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis AMD] Length = 920 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/728 (40%), Positives = 438/728 (60%), Gaps = 42/728 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ L R+IDR +RPLF +NE QV+ ++ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230 A+ M+E A + + +++ + + G KP I+ I ++L ++ AKE Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + +E+ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ VD+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQA R IL +++ + + ++ F PR+ IP D+I VIG GK+I I Sbjct: 556 AALQQAHEARTTILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+ +I SI + VP+ + + G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGD V V + D+RGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFED 734 Query: 692 QNTGKPIV 699 Q + P V Sbjct: 735 QESSAPAV 742 >gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] Length = 718 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/704 (41%), Positives = 438/704 (62%), Gaps = 18/704 (2%) Query: 1 MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59 MF++ I+ G + LETG++ARQ+DGAV+ G+ ++LATV ++ K+G DF PL Sbjct: 1 MFNIVQQTIQMPDGSTITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPL 60 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119 +V+YQE+ + GKIPG + RRE + ++NEILISR+IDR++RP+F + + E QV++ + Sbjct: 61 SVDYQEKFASNGKIPGSFQRREGKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLHS 120 Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178 D P ++ +AASAA+M S +PF GP+ +V ING+YV+NP + LDL V Sbjct: 121 ADENIQPDALAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLDLIV 180 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKM--CAKEPIVIDSK 235 +GT D+++MVE E+N++SE +++A+ H K + A + AK+ K + Sbjct: 181 AGTSDSIIMVEGESNEVSEIEMVEALRAAHEVIKLQVAAQKEFEAKVGSTTKREYNHEVH 240 Query: 236 DFSKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 D ++++E+M + + + C P K+ R + K + + +++ + + Sbjct: 241 D-AEIKEKMYSELFDKVYAVCLEGNPNKHYRSEA---FAKILEDFIAAQPEELQDNPLYK 296 Query: 294 V-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 V F DI R ++L++ R+DGR +R I+ +V L HGS+LF RG+TQ++ Sbjct: 297 VYFGDITYDASRKMVLEEGKRLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTT 356 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DEQ VD + F +HYNF +TGEV RREIGHG LA+R++ V Sbjct: 357 TLGTKLDEQIVDLPMVKGYSKFYLHYNFPGFSTGEVRPNRGVGRREIGHGNLAQRSLERV 416 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P + PYT+R+VS+I ES+GSSSMATVC L+LMDAGVPI PV+GIAMGL+ D Sbjct: 417 MPPEEENPYTIRVVSDILESNGSSSMATVCAGCLSLMDAGVPIKAPVSGIAMGLITDPST 476 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + +LSDI GDEDHLG MDFKV GT GI A QMD+KIGG+S +I+ AL QA+ GRLH Sbjct: 477 GKWAVLSDILGDEDHLGDMDFKVTGTAQGIVACQMDIKIGGLSFDIIEKALNQAREGRLH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587 IL +M++VL + + L PR + I + I VIG GGKV++ I ++GA VNI Sbjct: 537 ILGKMTEVLEKPKPDLKPHAPRAVTIVIDRELIGAVIGPGGKVVQEIQRESGATVNIEEK 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ G V I +++ ++ AR+ I +I PEV +IY V + FGAF+ F ++GL+ Sbjct: 597 DNKGYVSIFATNGESMDLARKRIDAIVKQPEVGEIYDATVKSIQPFGAFMEFLPGKEGLL 656 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 HIS++S ER+ V+KEGD + +KL + D + GK +LS KV+ Sbjct: 657 HISEISWERLPSMDGVLKEGDQLQIKLTEVDKKTGKFRLSRKVL 700 >gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 299 str. F0039] gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 299 str. F0039] Length = 743 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/699 (39%), Positives = 428/699 (61%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + T G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++NEIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +PF+ P+ +V ING+YV+NP + + +DL V T+D +LMVE E Sbjct: 133 AASAALACSDIPFDFPISEVRVARINGEYVVNPTFQQMENADMDLMVGATKDNILMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE +++A+ H KP+ + ++L+K + V + +EE+ + +++ Sbjct: 193 MDEVSEQELIEALKVAHEAIKPMCDLQTELSKELGVD--VKREYNHENNDEELREALRKA 250 Query: 252 LRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDI 298 C+ +K R + D +K+ + +++ H+ E E+ ++D+ Sbjct: 251 TYDKCYAIALAGDHDKKSRGEAFDQIKEAFIEEYNNAHTDLTEDELSDKHALVDRYYDDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR + +R I +V L HGS+LF RG+TQ++ TLG++ Sbjct: 311 MRDSMRRCILDEGKRLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLSTCTLGSKL 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD + F++HYNF P +TGE RRE+GHG LA R + +P A Sbjct: 371 DEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +L+LMDAGVP+ PV+GIAMGL+K+ + + +L Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLSLMDAGVPMKAPVSGIAMGLIKNPGEEKYAVL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT GITA QMD+K G+S I+ AL QAK GR HIL++M+ Sbjct: 489 SDILGDEDHLGDMDFKTTGTLKGITATQMDIKCDGLSFEILEKALMQAKAGREHILSKMT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTV 593 + +S R ++ PR+ + IP + I +IG GGK+I+ + E+TGA + I D G V Sbjct: 549 ETISAPREEMKPQVPRIVSLEIPKEFIGAIIGPGGKIIQQMQEETGATITIEEVDGVGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA + I++I VPE+ + Y G V VM +G FV +DGL+HIS++ Sbjct: 609 QVSAPNKDSIDAALKKIKAIVAVPEIGETYDGVVRSVMPYGCFVEIMPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLLD D + GK KLS + + Sbjct: 669 WKRLESVEEAGIKEGDNITVKLLDIDPKTGKYKLSRRAL 707 >gi|283782720|ref|YP_003373474.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis 409-05] gi|298253113|ref|ZP_06976905.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis 5-1] gi|283441010|gb|ADB13476.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis 409-05] gi|297532508|gb|EFH71394.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis 5-1] Length = 926 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 295/728 (40%), Positives = 438/728 (60%), Gaps = 42/728 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ L R+IDR +RPLF +NE QV+ ++ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230 A+ M+E A + + +++ + + G KP I+ I ++L ++ AKE Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + +E+ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ VD+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQA R IL +++ + + ++ F PR+ IP D+I VIG GK+I I Sbjct: 556 AALQQAHEARATILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S E A+ +I SI + VP+ + + G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGD V V + D+RGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFED 734 Query: 692 QNTGKPIV 699 Q + P V Sbjct: 735 QESSAPAV 742 >gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum] Length = 897 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/745 (37%), Positives = 434/745 (58%), Gaps = 60/745 (8%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+++I R +ETG + RQ+ G+V T GET+V TV + + + DFFPL+VNYQ Sbjct: 87 HSLKIPVGDRHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNYQ 146 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER A G+ GG+ +RE + ++E+LI R+IDR +RP K + +ETQ++ V+ +D Sbjct: 147 ERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGSH 206 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 +P +++ AA AL LS +P V G +V I +Y++NP +E + S LDL ++GT Sbjct: 207 APDALAITAAGIALALSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMENSELDLMLAGTDS 266 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLE 241 A+LM+E N L E+ +L A+ G + + + + L K C K P +ID+ +L Sbjct: 267 AILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGK-PKMIDAIKLPPPELY 325 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS------EHSSWNEGEIVS-- 293 + + ++ ++L I K R K + L+++++ + E + + E ++ Sbjct: 326 KHVEEIAGDELVKVLQIRNKIPRRKALSSLEERVLKILTENGFVIDESTPRSNAETIAEI 385 Query: 294 ---------------------------------------VFEDIQAKVVRTVMLDKKVRM 314 VF+++ +K +R +++ R Sbjct: 386 LEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 445 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQRND 373 DGR + +R I++ +L R HGS+LF RG+TQA+ V TLG + Q +++L Sbjct: 446 DGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDYKR 505 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F + Y+F P GE R+GAPSRREIGHG LA R++ +LP FPYT+R+ S ITES+ Sbjct: 506 FYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITESN 565 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487 GSSSMA+VCG LAL DAGVPI +AGIAMGLV D +F +ILSDI+G ED G Sbjct: 566 GSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASG 625 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAG + GITA QMD+K+ GI+ IM AL QA+ GR HIL EM K L +L Sbjct: 626 DMDFKVAGNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMKSLPPPAKRLS 685 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606 ++ P + +M + PD+I +IG GGK ++ I+EQ+G + ++ +D+GTV+I + LA +E + Sbjct: 686 KYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVRIFAKDLASLEKS 745 Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 + +I S+T VP + IY+ +K ++ +G FV R+GL +IS+LS+ +AK DV K Sbjct: 746 KAIISSLTMVPNIGDIYRNCEIKSIVPYGVFVEIAPGREGLCYISELSSGWLAKAEDVFK 805 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690 GD + VKL + +++G+++LS + + Sbjct: 806 VGDHIDVKLTEINEKGQLRLSHRAL 830 >gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis XB6B4] Length = 719 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 282/694 (40%), Positives = 415/694 (59%), Gaps = 23/694 (3%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 +E AGR L ++ GR+ Q++GA L YGET VL+T +DG DFFPL+V Y+E+ Y Sbjct: 29 MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 88 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM D E P V Sbjct: 89 AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 148 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187 V+M+ ++ A+ +S +PF GP Q+ +G++++NP D G L L V+ T + V+M Sbjct: 149 VAMIGSALAVTISDIPFAGPCAMTQMGMADGEFIINPSQKVWDTGDLQLTVASTAEKVIM 208 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 +E AN++ E+ +++AI H+ + +I I+ + + K S + EEM Sbjct: 209 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 265 Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300 IK E + + F EK R + I ++ K+ F +++ W GE V + Q Sbjct: 266 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 321 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 K VR ++L R DGR +R ++A+V L+ R HGS++F RG TQ VVTL + Sbjct: 322 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 381 Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 Q +D L T+R ++ YNF + GE P RREIGHG LA +A+ VLP Sbjct: 382 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475 +FPY +R VSE ES+GS+SMA+ C S ++LM AGVP+ VAGI+ GLV DD+++ Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534 L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ +A+ R++I++E Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 MSK + E R ++ F P++ + I PD+I +V+G GK I I+++TG K++I DDG V Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + + A EMI+ IT +I+ G VV + +FGAFV F ++G+VHIS++S Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ER+ + DV+ GD V V L D G+I SMK Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 713 >gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows phytoplasma OY-M] gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows phytoplasma OY-M] Length = 715 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 283/696 (40%), Positives = 416/696 (59%), Gaps = 37/696 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 ++E G AR D ++L Y +TVVL T V+ R + DF PLTV YQE+ YA GKIPG Sbjct: 15 FQVEIGTYARNVDASILVRYQDTVVLTTTVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 +LRRE R ++EIL SR+IDRS+RPLF ++ E QVI V+ D + + SM+ +S Sbjct: 74 SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 +L++S +PF + G V IN ++++NP L + +L L V+GT+ V M+E AN+ Sbjct: 134 LSLLISEIPFFEAISGVYVGKINDKFIINPTLQQLANSTLHLMVAGTKHNVTMIEAHANE 193 Query: 195 LSEDVVLDAIIFGHNECKPVI---------EAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 +SE L+AI F H K + A +K+ + F+K + ++ Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPAKITNTLHQTEQTQQQAFFAKHQSQVK 253 Query: 246 QMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVFE 296 Q I +SC + K QI D K+ + F E + ++F+ Sbjct: 254 QAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDTATVFDYEAHKKHLQTTETLFQ 308 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + + R+++L +K+R D R E +R + +Q+ LL R HGS+LF RG TQ++ VTLG Sbjct: 309 KLSKQETRSLILQEKIRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGC 368 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + + +D LS Q FM+HYNF P + G V R APSRREIGHG LA +AI VLP+ Sbjct: 369 LSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEE 428 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474 FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAG+++GLV D + ++ Sbjct: 429 KDFPYTIRVVSEILESNGSSSQATVCASSLALMASGVPLKKAVAGMSVGLVFDQATNKYV 488 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI I+ A QAK+GRLHIL Sbjct: 489 ILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIHFKILQEAFLQAKKGRLHILEH 548 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTV 593 MS+ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I I+E G K++I+ DG V Sbjct: 549 MSQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLV 647 + S+L ++ I S+ ++ Y+ +++ + GA C +GL+ Sbjct: 609 FVMHSNLETVKKTVAFIESLIQEIQIGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLI 668 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 H++Q ++ K +DV+K G+TV VK +DRG+I Sbjct: 669 HVNQ---KKFQKITDVLKIGETVSVKCTKINDRGRI 701 >gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 317 str. F0108] gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 317 str. F0108] Length = 742 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/699 (40%), Positives = 428/699 (61%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P +NEIL SR++DR +RPLF Y E V + ++ D P ++ + Sbjct: 73 FPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADGVDQPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AAS+A+ S +PF+ + +V +NG+YV+NP ++ + +D+ V T+D ++MVE E Sbjct: 133 AASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++++E ++ A+ H+ KP+ +LAK K+ V D +E++ + + ++ Sbjct: 193 MDEVTEQDLIQALKVAHDAIKPMCTMQEELAKELGKD--VKREYDHEVNDEDLRKQMNDE 250 Query: 252 LRVSCFIPEKYVRCKQ-IDDLKKKMVSYFSSEHSSWNEGEIVS------------VFEDI 298 L + K KQ D K+V+ F ++ + N ++ + ++D+ Sbjct: 251 LYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEEKHALAARYYDDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+TQ++ TLGT+ Sbjct: 311 LRDAMRRCILDEGKRLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGETQSLSTCTLGTKL 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD + F++HYNF P +TGE RREIGHG LA R + +P A Sbjct: 371 DEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 +PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ + + IL Sbjct: 429 YPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKNPGEEKYAIL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL +++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593 + ++E R +L PR+ + IP + I VIG GGK+I+ + E TG + ID+ G V Sbjct: 549 ETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEVDGKGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ A I+AA IR+I VPEV +IY+G V VM +G FV +DGL+HIS++ Sbjct: 609 QVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLLD D + GK KLS +V+ Sbjct: 669 WKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVL 707 >gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 507 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 250/510 (49%), Positives = 347/510 (68%), Gaps = 6/510 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF + IEW GRPL LETG+IARQ+ G+V+ YG+T VL TVV + ++ DF PL Sbjct: 1 MFKIIKKSIEWGGRPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E V+ N++ + Sbjct: 60 VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178 D + P V +++ A AAL +SG+PF + G V N Y+LNP + E + S LDLF+ Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179 Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 SG ++++LMVE E +LSE+ V +AI FGH KPVI+ I + A +P D S Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + +E+ + K D + K R + ++ +++ +++ + + +E I ++ Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +VR ++ K VR+DGR + +R I +V +L +THGS+LF RG+TQA+VV LGT + Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ VD + G +R FM+HYNF A GE S AP RREIGHG+LA +AIHPVLP ++ Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+KD D+++ILSD Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508 I GDED+LG MDFKVAGT G+TA+QMDMK Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMK 506 >gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] Length = 768 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 277/706 (39%), Positives = 429/706 (60%), Gaps = 37/706 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA++ T++LATVV + G DF PL +Y+E+ A G+ Sbjct: 13 GRTISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQCDYKEKYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE R ++ EIL SR++DR++RPLF Y E V I + D + P ++ Sbjct: 73 FPGGFTKREGRASDYEILTSRLVDRALRPLFPSNYHAEVYVNITLFSADGKDMPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +PF+GP+ +V ING YV+NP ++ Q +D+ V T++ ++MVE E Sbjct: 133 AASAALAASDIPFDGPISEVRVARINGAYVINPTFEQLKQADMDIMVGATEENIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++ E +L+A+ H KP+ +L K + V D +E++ + + ++ Sbjct: 193 MDEVPESALLEALKAAHEAIKPMCRLQKELMKELGTD--VKREYDHEVNDEDLRKQVTDE 250 Query: 252 LRVSCFIP----------------EKYVRCKQIDDLKKKMVS---YFSSEHSSWNEGEIV 292 C+ P E + + ++ D K++ V+ +++ I Sbjct: 251 ----CYQPVYAIAAAGNHNKNQREEGFTKIRE--DFKERYVAAHVTLAADELEEKNALID 304 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ +R +LD+ R+DGR + +R I + G L HGS++F RG+TQA+ Sbjct: 305 RYYNDVERDAMRRCILDEGKRLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATT 364 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGTR DE+ +D + F++HYNF P +TGE RREIGHG LA RA+ Sbjct: 365 TLGTRLDEKMIDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKNQ 424 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P A FPYT+RIVS+I ES+GSSSMATVC +L+L+DAGVP+++PV+GIAMGL+K+ Sbjct: 425 IP--ADFPYTVRIVSDILESNGSSSMATVCAGTLSLLDAGVPMNRPVSGIAMGLIKNPGE 482 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + ILSDI GDEDHLG MDFK GT +G+TA QMD+K G+S I+ AL QAK GR H Sbjct: 483 EKYAILSDILGDEDHLGDMDFKTTGTINGLTATQMDIKCDGLSYEILEKALMQAKAGREH 542 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL ++++ L+E R PR+ IP + I VIG GGK+I+G+ E+TG+ + I+++ Sbjct: 543 ILGKLTETLAEPRPDFKPHVPRIVAFEIPKEFIGAVIGPGGKIIQGMQEETGSTITIEEE 602 Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 G +++++ I+AA IR+I VPEV +IY ++V +M +G FV F ++GL+ Sbjct: 603 DGVGKIQVSAPCKESIDAAVAKIRAIVAVPEVGEIYDAKIVSIMPYGCFVEFMPGKEGLL 662 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691 HIS+++ +R+ + + EGD VKLL+ DD+ GK +LS +V++ Sbjct: 663 HISEIAWKRLESVEEAGLHEGDHTSVKLLEIDDKTGKFRLSHRVLE 708 >gi|119717401|ref|YP_924366.1| polynucleotide phosphorylase/polyadenylase [Nocardioides sp. JS614] gi|187610316|sp|A1SLJ4|PNP_NOCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119538062|gb|ABL82679.1| Polyribonucleotide nucleotidyltransferase [Nocardioides sp. JS614] Length = 742 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 292/711 (41%), Positives = 428/711 (60%), Gaps = 41/711 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R +K ETG +ARQ+ GAV A E T++L+ + KD DFFPLT++ +ER Y Sbjct: 17 KFGTRTVKFETGLLARQAAGAVTAYLDEDTMLLSATTAGKHPKDHFDFFPLTIDVEERMY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + R E RP E+ IL R+IDR +RP F K +NE QV+I VM + ++ V Sbjct: 77 AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD 183 +++ AAS + LSGLPF GPV G +V I GQ+V P + + D+ V+G T D Sbjct: 137 LAINAASLSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196 Query: 184 -AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE-- 228 A++MVE EA + + D+V + G + KP I EA +LA + AK Sbjct: 197 VAIMMVEAEATEQTWDLVRSGTQAPTEEIVAGGLDAAKPFIKQLCEAQVELANVAAKPVQ 256 Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 P+ +D +D + +E + + ++++ +K R + D+LK ++++ E Sbjct: 257 DFPVFLDYEDDVYDAVEAAVKAELAAAMKIA----DKQERNDRTDELKDEVLAKLG-EQF 311 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E EI + F + +VVR +L KVR+DGR +R + A+VG++ R HGS+LF RG Sbjct: 312 EGREKEIGAAFRSVNKQVVRESILRDKVRIDGRGLADIRPLHAEVGVIPRVHGSALFERG 371 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL + EQ +D+LS + +M Y F P +TGE R+G+P RRE+GHG L Sbjct: 372 ETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYVFPPFSTGETGRVGSPKRREVGHGAL 431 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 ARRA+ PVLP +FPY +R +SE S+GS+SM +VC S+LAL+ AGVP+ PVAGIAM Sbjct: 432 ARRALLPVLPTREEFPYAIRQLSEAMGSNGSTSMGSVCASTLALLQAGVPLKAPVAGIAM 491 Query: 465 GLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 GLV DG ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ A Sbjct: 492 GLVSGEIDGQLQYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDGIPAEVLAQA 551 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QA+ RL IL+ M++ + E ++ + PR+ + IP D+I VIG GK+I I + Sbjct: 552 LTQARDARLTILDVMAEAIDEPE-EMSAYAPRIITITIPVDKIGEVIGPKGKIINQIQDD 610 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA ++I+DDGT+ I +++ EAA+ + +I + +PEV + Y G VVK +FGAFV Sbjct: 611 TGASISIEDDGTIYIGATNGEAAEAAKNAVNAIANPTMPEVGERYLGTVVKTTNFGAFVS 670 Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS+L + +RV DVV G + V++ + DDRGK+ L Sbjct: 671 LMPGKDGLLHISKLRSLAGGKRVDAVEDVVSVGQKIQVQIAEIDDRGKLSL 721 >gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50] gi|156865604|gb|EDO59035.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50] Length = 700 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/703 (40%), Positives = 423/703 (60%), Gaps = 20/703 (2%) Query: 3 DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 + T ++ AG+ L+++ GR+A Q++GA YG+T VL+T+ +DG DFFPL+V Sbjct: 4 EFKTYSMDIAGKTLRVDIGRVAAQANGAAFMHYGDTTVLSTITASEKPRDGIDFFPLSVE 63 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+E+ YAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+ + V D Sbjct: 64 YEEKMYAVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVTSVDP 123 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 E P +V+M+ ++ A +S +PF GP QV I+G++++NP + D+G L L V+ T Sbjct: 124 ECRPELVAMLGSAIATAISDVPFCGPCAMTQVGMIDGEFIINPSQKQWDEGDLKLTVAST 183 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SK 239 V+M+E AN++ ED +++AI H+ +IE I+K+ + K D+ Sbjct: 184 STKVIMIEAGANEIPEDKMIEAIYKAHDVNLSIIEFINKMVEEVGKP-----KHDYVSCA 238 Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 + EE+ +KE ++ V+ F EK VR + I +++K F +++ W I Sbjct: 239 IPEELFAAMKEIVTPAEMEVAVFTDEKQVREENIRQIREKFEEAF-ADNEEW-LALIPEA 296 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 Q K VR ++L + R DGR +R ++A+V ++ R HGS++F RG TQ +VTL Sbjct: 297 LYQYQKKTVRKMILKDRKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTL 356 Query: 355 GTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 + Q +D L +M HYNF + GE P RREIGHG LA RA+ PVL Sbjct: 357 APLSEIQKIDGLDENVVSKRYMHHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVL 416 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGD 471 P +FPY +R VSE ES+GS+SMA+ C S ++LM AGVP+ VAGI+ GLV D Sbjct: 417 PSVEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKSMVAGISCGLVTGDTDD 476 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D+++L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+ + + RL I Sbjct: 477 DYVVLTDIQGLEDFFGDMDFKVTGTYKGITAIQMDIKIHGLTRPIVEEAIARTREARLFI 536 Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 ++ MS + R + EF P++ + I PD+I VIG GK I I+E+TG K++IDDD Sbjct: 537 MDGVMSSAIPAPRTHVNEFAPKIVQIKIDPDKIGEVIGQRGKTINTIIEETGVKIDIDDD 596 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G V + ++ A MI+ I + V YKG+VVK++D GA V +DGL+HIS Sbjct: 597 GNVSVCGVEQESMDKAMNMIKMIVEPLVVGDDYKGKVVKILDCGAIVSLAPNKDGLIHIS 656 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692 +LS +RVAK DVV GD V VK++ D+R G+I LS+K V+ Sbjct: 657 KLSDKRVAKVEDVVNVGDDVVVKVIKIDERAGRISLSLKDVEN 699 >gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa] gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa] Length = 853 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 285/746 (38%), Positives = 434/746 (58%), Gaps = 62/746 (8%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I R + +ETG + RQ+ G+V T GET++ +V D + DF+PL+VNYQE Sbjct: 18 SVKIPVGDRHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDDVPSEPSDFYPLSVNYQE 77 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE R ++E+LI R+IDR +RP K + +ETQ++ V+ +D S Sbjct: 78 RFSAAGRTSGGFFKREGRLKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 137 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P +++ AA AL LS +P + G +V ++ ++++NP E ++ LDL ++GT A Sbjct: 138 PDSLAVTAAGIALALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESKLDLLLAGTDSA 197 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242 + M+E N L E+ +L+A+ G + + + ++ L K C K P ++D+ +L + Sbjct: 198 IFMIEGYCNFLPEEKLLEAVQIGQDAVRTICNEVNALVKKCGK-PKMLDAIKLPPPELYK 256 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---------------------- 280 M ++ ++L I K R K + L++K++S + Sbjct: 257 HMEEIAGDELVKVLQIRNKVPRRKALQSLEEKVLSILTEKGYVSKDQSFGIPETVADLLE 316 Query: 281 ---------------------------SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 S S ++E ++ VF+++ +K +R +++ R Sbjct: 317 VEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLFSEVDVKLVFKEVTSKFLRRRIVEGGKR 376 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-N 372 DGR E +R I + GLL R HGS+LF RG+TQ++ VVTLG ++ Q VD+L + Sbjct: 377 SDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEFK 436 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 F + Y+F P GEV R+GAPSRREIGHG LA RA+ P+LP FPYT+R+ S ITES Sbjct: 437 RFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDFPYTVRVESTITES 496 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486 +GSSSMA+VCG LAL DAGVP+ +AGIAMG+V D ++F +ILSDI+G ED Sbjct: 497 NGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDAS 556 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAG + G+TA QMD+K+GGI+ +M AL QA+ GR HIL EM K +L Sbjct: 557 GDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRTALLQARDGRKHILAEMLKCSPSPSKRL 616 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605 ++ P + IM + P+++ +IG GGK ++ I+E+TG + ++ DDG VKI + L+ IE Sbjct: 617 SKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSIEK 676 Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 + +I +T VP V IYK +K V +G FV +GL HIS+LS+ + K D Sbjct: 677 SISIISQLTMVPAVGDIYKNCEIKSVAPYGVFVEIAPGHEGLCHISELSSNWLPKAEDAF 736 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD V VKL++ + +G+++LS K + Sbjct: 737 KVGDRVDVKLIEVNGKGQLRLSRKAL 762 >gi|296269051|ref|YP_003651683.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Thermobispora bispora DSM 43833] gi|296091838|gb|ADG87790.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Thermobispora bispora DSM 43833] Length = 773 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/719 (39%), Positives = 432/719 (60%), Gaps = 38/719 (5%) Query: 1 MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQ 54 M VHT E + R ++ ETGR+ARQ+ G+ +A ET+VL+ + K+G Sbjct: 1 MEGVHTSEAVIDNGSFGTRTVRFETGRLARQATGSAVAYLDDETMVLSATTVSKQPKEGL 60 Query: 55 DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114 DFFPLTV+ +ER YA GKIPG + RRE RP+E+ IL R+IDR +RP F+K +NE Q++ Sbjct: 61 DFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQIV 120 Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173 V+ + VV++ AAS + L+GLPF GP+ G +V I+G++V P E + + Sbjct: 121 ATVLAIHPDHLYDVVAINAASMSTQLAGLPFSGPIGGVRVGLIDGKWVAFPTYSELENAT 180 Query: 174 LDLFVSG--TQD---AVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216 D+ V+G +D A++MVE E+ + + +V + + G KP I E Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRNTLKLVAEGAVAPTEEVVAQGLEAAKPFIKVLCE 240 Query: 217 AISKLAKMCAKEP----IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272 A KLAK+ K P I D +D + E + +K +L + IP K R +I+ +K Sbjct: 241 AQEKLAKVAGKAPGNYPIYPDYQD--DVYEAVCAAVKSELAAALTIPGKQERELEIERVK 298 Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332 E E EI F + +++R +L++ +R+DGR + +R ++A+V ++ Sbjct: 299 AIAAEKLLPEFEG-REKEIGPAFRALTRQLMRERVLNEGIRIDGRGPKDIRQLNAEVHVI 357 Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392 R HGS+LF RG+TQ + + TL EQ +D+L+ + +M +YNF P +TGEV R+G Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGEVGRVG 417 Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452 AP RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+DAG Sbjct: 418 APKRREIGHGALAERALLPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAG 477 Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 VP+ VAGIAMGL+ + ++ L+DI G ED +G MDFKVAGT ITA+Q+D K+ GI Sbjct: 478 VPLKDMVAGIAMGLIGENGKYVTLTDIIGAEDAMGDMDFKVAGTRDLITALQLDTKLDGI 537 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 ++ AL+QA+ RL IL+ M + + ++ L PR+ + +P D+I +VIG GK Sbjct: 538 PAEVLAGALKQARSARLAILDVMKEAI-DAPAPLNPNAPRILTLKVPVDKIGDVIGPKGK 596 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I E+TGA++ I+DDGT+ I ++ A EAA +I I + +PEV + Y G +VK+ Sbjct: 597 IINQIQEKTGAEITIEDDGTIYIGATDGASAEAASALINGIANPHMPEVGERYLGTIVKL 656 Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV +DGL+HISQ+ +R+ DV+ G+ + V++++ D RGK+ L Sbjct: 657 AAFGAFVSLLPGKDGLLHISQIRKLYGGKRIDNVEDVLTVGEKIQVEVVEIDSRGKLSL 715 >gi|317967932|ref|ZP_07969322.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CB0205] Length = 680 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 284/673 (42%), Positives = 404/673 (60%), Gaps = 18/673 (2%) Query: 36 GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95 G+T VL T ++G DF PL +Y+ER YA G+IPG ++RRESRP E LI+R+I Sbjct: 5 GDTSVLVTATRSGG-REGIDFLPLICDYEERLYAAGRIPGSFMRRESRPPERATLIARLI 63 Query: 96 DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155 DR +RPLF +++ QV+ M D P V+++ AS A +L+ +PF GP+ +V Sbjct: 64 DRPMRPLFPSWLRDDMQVVATCMSLDERVPPDVLAVTGASLATLLAKIPFNGPMAAVRVG 123 Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214 + ++LNP E ++ LDL V+GT V+MVE ANQL E V++AI FG+ + Sbjct: 124 LLGDDFILNPSYREIERSELDLVVAGTPQGVIMVEAGANQLPEQDVIEAIDFGYEAVCEL 183 Query: 215 IEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269 I+ L K E ++ +D+ + LE+E S+ I + L+ F K R +Q+D Sbjct: 184 IKVQQTLLKELGIEQVIPEAQTVDATLPTFLEKECSKGIGDVLKQ--FSLTKAERDEQLD 241 Query: 270 DLKKKMVSYFSSEHS--------SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321 +K + S S N + + ++ + K++R +++ R+DGR+ + Sbjct: 242 AIKAQAAEKISGLKDDDAVKVAVSSNGKALGNNYKALTKKLMRAQIVNDGKRVDGRNLDE 301 Query: 322 VRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380 VR ISA G+L +R HGS LF RG TQ + TLGT D Q +D L+ + ++ HYNF Sbjct: 302 VRPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNEKTYLHHYNF 361 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P + GE M +P RREIGHG LA RA+ PVLP FPY LR+VSE S+GS+SM + Sbjct: 362 PPYSVGETRPMRSPGRREIGHGALAERALIPVLPSKESFPYVLRVVSECLSSNGSTSMGS 421 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 VCGS+LALMDAGVP+ PV+G AMGL+K+G + IL+DI G ED LG MDFKVAGT+ GI Sbjct: 422 VCGSTLALMDAGVPLKAPVSGAAMGLIKEGSEVRILTDIQGIEDFLGDMDFKVAGTEKGI 481 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+QMDMKI G+ + A+ QA+ RLHIL +M + + R L PR+ I P Sbjct: 482 TALQMDMKITGLEVKTVAEAINQARPARLHILEKMLAAIDKPRDVLSPHAPRLLSFRIDP 541 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 + I VIG GG+ I+GI E+T K++I+D G V IAS A E A+ +I +T Sbjct: 542 ELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRRVSEG 601 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 +++ G V +V+ GAFV ++G++HISQLS RV K DVVK GD V V++ + D+R Sbjct: 602 EVFSGAVTRVIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDHVTVRVREIDNR 661 Query: 681 GKIKLSMKVVDQN 693 G+I L+++ V Q Sbjct: 662 GRINLTLRGVPQQ 674 >gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis CRIS 5C-B1] gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis CRIS 5C-B1] Length = 766 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 279/698 (39%), Positives = 421/698 (60%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P++NEIL SR++DR++RPLF Y E V I ++ D P ++ + Sbjct: 64 FPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSADGVDQPDALAGL 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ + +V ING+YV+NP ++ +DL V T+D ++MVE E Sbjct: 124 AASAAMACSDIPFDFYISEVRVARINGEYVVNPTFEQMKSADMDLMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++SE +++A+ H KP+ +L K K+ V D +E++ Q + ++ Sbjct: 184 MNEVSELDLIEALKAAHEAIKPMCTVQEELNKELGKD--VKREYDHEVNDEDLRQQMNDE 241 Query: 252 LRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWN-------EGEIVSVFEDIQ 299 L + K KQ D + + + + H+ E ++D+ Sbjct: 242 LYQPAYDITKQALPKQERHDAFDKIIADFLEKYDAAHADLTEEELEEKHAEATRYYDDVL 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+TQ++ TLGT+ D Sbjct: 302 KNAMRRCILDEGKRLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ VD + F++HYNF P +TGE RREIGHG LA R + +P+ F Sbjct: 362 EKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DF 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D ++ILS Sbjct: 420 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYVILS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL +M + Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKMLE 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594 + E R ++ PR+E IP + I +IG GGK+I+ + E TGA + ID+ G ++ Sbjct: 540 TMPEPRSEMKPQVPRIEAFEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDELDGVGKIQ 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I++A I+ I +PE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 VSAPNKEAIDSAIAKIKGIVAIPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 659 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ D + EGD + VKLL+ D + GK KLS KV+ Sbjct: 660 KRLETVEDAGIHEGDKIKVKLLEIDPKTGKYKLSRKVL 697 >gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteriales bacterium ALC-1] gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteriales bacterium ALC-1] Length = 751 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 283/692 (40%), Positives = 427/692 (61%), Gaps = 17/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD +F PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VNFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y +ETQV+I +M HD E P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDPEVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE P+ A+V ING++++NP + ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 +++SE+ + DAI F H K A KLA+ K+ + ++ LE+++ M Sbjct: 194 MDEISEEEMADAIKFAHEHIKVQCAAQVKLAEAFGKKAVREYEPEREDKDLEKKVHDMAY 253 Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + ++ K+ R +K+ + + FS E G + + + +R + L Sbjct: 254 DKVYAIAKAGSAKHERSAAFQQIKEDIKATFSEEELEDYGGLVSDYYRKAEKAAIRDLTL 313 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 D+ +R+DGR + +R I +V L THGSS+F RG+TQA+ VTLGT D +D S Sbjct: 314 DEGLRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSRDANQIDMPSQ 373 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 F +HYNF P TGE + SRRE+GHG LA+RA+ ++P PYT+R+VSE Sbjct: 374 EGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMVPDDC--PYTVRVVSE 431 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDHL 486 + ES+GSSSMATVC ++A+MDAGV ++KPV+GIAMGL+ D D + +LSDI GDEDHL Sbjct: 432 VLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAMGLISDADSGKYAVLSDILGDEDHL 491 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+K+ G+S I+V ALQQA+ GRLHIL +++ +++ ++ Sbjct: 492 GDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARDGRLHILEKLTDTIAQPNAEV 551 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601 E P + IP + I +IG GGKVI+ + ++T + I++D G V+I Sbjct: 552 KEHAPTMITRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEEGIVEILGVGKT 611 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659 I+A I SI PEV +Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 612 GIDAVMAKIDSILFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLHVSELAWERTEN 671 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDVV GD VK D R K K+S K + Sbjct: 672 VSDVVNMGDVFDVKYFGLDKRTRKEKVSRKAI 703 >gi|308235438|ref|ZP_07666175.1| polynucleotide phosphorylase/polyadenylase [Gardnerella vaginalis ATCC 14018] gi|311114219|ref|YP_003985440.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945713|gb|ADP38417.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] Length = 914 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 290/715 (40%), Positives = 433/715 (60%), Gaps = 41/715 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + +++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ L R+IDR +RPLF +NE QV+ ++ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ M+SGLPFEGPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230 A+ M+E A + + +++ + + G KP I+ I ++L ++ AKE Sbjct: 198 AIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + +E+ I E DL + I EK R +I ++K+ + + + E + Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315 Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E E+ + F+++Q ++VR +L + R+DGR +R +SA+V ++ R HGS+LF Sbjct: 316 DDEEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ VD+LSG Q +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +A+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +I+ Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 ALQQA R IL +++ + + ++ F PR+ IP D+I VIG GK+I I Sbjct: 556 AALQQAHEARATILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E+TGA++ I+DDGTV I+S + A+E+I SI + +P+ + + G+VVK FGAF Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGETFTGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 V+ DGL+HISQ+ ER+ DV+KEGD V V + D+RGKI L++ Sbjct: 675 VNLTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAI 729 >gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BBFL7] gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BBFL7] Length = 748 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/677 (41%), Positives = 424/677 (62%), Gaps = 10/677 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G + +ETG +A+Q+ G+V+ T G+ ++L TVV G DF PLTV+Y+E+ A GK Sbjct: 15 GPDITIETGALAKQAHGSVVITCGKAMLLGTVVSSYK-STGLDFLPLTVDYREKFAAAGK 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP + E+L R++DR +RPLF K Y E QV+I +M HD E P ++ + Sbjct: 74 YPGGFFKREARPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMIQLMSHDPEVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS LPFE + +V ++G++V+NP + + L++ + + D+V+MVE E Sbjct: 134 AASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLEMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 ++SE+ ++ AI H K A LA+ K+ + K+ + +E +++++ Sbjct: 194 MEEISEEEMIAAIKAAHEAIKDQCAAQIALAEQVGKKEVREYEGEKEDADIEAKVAELAY 253 Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + V+ K+ R ++K+++ + FS E + N I F K VR V+L Sbjct: 254 QKVYDVAQKGSAKHERSAAFSEIKEEIKATFSEEDQAENGDLISKYFNKTHKKAVRDVLL 313 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 ++ +R+DGR + +RDI +V L THGS++F RG+TQA+ VTLGT D +D S Sbjct: 314 NEGIRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMASQ 373 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 F +HYNF P +TGE + SRREIGHG LA+RA+ +LP+ PYT+R+VSE Sbjct: 374 EGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKNMLPE--DLPYTVRVVSE 431 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ES+GSSSMATVC ++A+MDAG+P+ KPV+GIAMGL+ DGD + +LSDI GDEDHLG Sbjct: 432 VLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAVLSDILGDEDHLGD 491 Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFKV GT+ GITA QMD+K+ G+S I+ AL QA+ GR+HIL +++ ++ + Sbjct: 492 MDFKVTGTEDGITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTDTIAAPAADVKP 551 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEA 605 P++E M I I VIG GGKVI+ + ++T +NI +D G ++IA + A+IEA Sbjct: 552 HAPKMESMEIEGKYIGAVIGPGGKVIQEMQKETETVINIKEDGEMGIIEIAGTDRAKIEA 611 Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A E I +I P V +Y+ +VVK++DFGA V F ++ L+H+S+ +R+ S V+K Sbjct: 612 ALEKISNIIFEPVVGSVYEVKVVKMLDFGAVVEFKPGKETLLHVSEFDYKRIEDPSTVLK 671 Query: 666 EGDTVWVKLLDFDDRGK 682 GD + VK + D R K Sbjct: 672 VGDVLDVKYMGVDPRTK 688 >gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 713 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 276/707 (39%), Positives = 431/707 (60%), Gaps = 33/707 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG +A+Q+DG+ + +T++LATVV + K+ +F PLTV+Y+E+ A GK Sbjct: 14 GRSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKETKNETNFLPLTVDYREKYSAGGK 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE RP++ EIL R++DR +RP F + +K E Q++I+++ +D P ++ + Sbjct: 74 IPGGFIKREGRPSDEEILTMRLVDRVLRPTFPEWFKKEIQIMISLLSYDKTVLPDGLAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AAS AL ++G+PF GP+ ++ +++NP LD+ + +DL V + ++++M+E E Sbjct: 134 AASTALSVAGVPFNGPISEIRIIRSKRNFIINPSLDQLKEADIDLIVGASMNSIIMIEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++ E L+ II H E + IEA +L+K + + SK ++ +KE+ Sbjct: 194 MKEIKESEFLNTIIHAHEEIQSQIEAQIRLSKKLSNNSSLFFEDQKSKKYNPENESLKEE 253 Query: 252 L-----------------RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 L + + FI EK + +++ KKK ++ E + Sbjct: 254 LFSFSYEKIEKIYSNSLDKKTRFIQEKII----LNNFKKKFLTEEKIEKEEAIIDQF--- 306 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 +E+I+ KV R ++L+K +R+DGR S+ +R I + V L HGS+LF RG+TQ++ VTL Sbjct: 307 YEEIKKKVTRNLILEKGIRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTL 366 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 G+ D +D++ + F +HYNF P +TGE+ + SRREIGHG LA+RA+ ++P Sbjct: 367 GSSLDANKIDNVVMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNIIP 426 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 PYT+R+VS+I ES+GSSSMATVC +SLALMDAG+ I PV+GIAMGL + + I Sbjct: 427 NN---PYTIRVVSDILESNGSSSMATVCAASLALMDAGISIKNPVSGIAMGLFMENEKKI 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRGRLHILN 533 I+SDI G+EDH G +DFK+ GT GITA QMD+ K G++ +++ L+QA GR+ IL Sbjct: 484 IISDIIGEEDHFGDLDFKITGTQYGITACQMDVKKTQGLTYDLLNQILKQALEGRIFILR 543 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DD 590 +M +VL E R ++ P++ IP D I +VIG GGKVI+ I T + I+ D Sbjct: 544 KMLEVLPEYRKKMKPNAPKIYTFNIPKDFIGSVIGTGGKVIQEIQSCTNTNILIEEKGDF 603 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G ++I +IE A + I+ IT VPE+ KIYK +V + DFGAFV +GL+HIS Sbjct: 604 GYIEIIGHDDEKIEKAIDRIKQITFVPELGKIYKAKVKSIKDFGAFVEIAKGVEGLLHIS 663 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696 ++ +R+ + + + GD V VK + D++ K+KLS KV+ GK Sbjct: 664 EIGWKRLNRIEEELHIGDIVDVKFMGMDEKNKKMKLSRKVLLPRPGK 710 >gi|227488675|ref|ZP_03918991.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091336|gb|EEI26648.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glucuronolyticum ATCC 51867] Length = 745 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 292/717 (40%), Positives = 433/717 (60%), Gaps = 43/717 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+DG+V A E T++LAT + ++G DFFPLTV+ +ER Y Sbjct: 25 DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 84 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ + IL R+IDR +RP F K +NE Q +I VM D V Sbjct: 85 AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 144 Query: 129 VSMVAASAALMLSGLPFEGPVVG------AQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181 V++ AASAA LSGLP G V G A D+ +GQ+V P +++ + +L ++ V+G Sbjct: 145 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 204 Query: 182 QD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----L 221 + A++MVE A + + V D + G KP I+ + + L Sbjct: 205 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 264 Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 +K+ AK+ PI D D + S+ I E + + + +D + +K+ Sbjct: 265 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 324 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + F E + E +I + + + ++VR +L + R+DGRD + +RD+S +V L+ R Sbjct: 325 LPKFEEEDETA-EKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRA 383 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL + EQ +DSLS ++ HYNF P +TGE R+G+P Sbjct: 384 HGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPK 443 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 444 RREIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 503 Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 504 KAPVAGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDG 563 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I N++ ALQQA RL IL+ M++V+ E ++ +F PR+ + +P +I VIG G Sbjct: 564 IPSNVLAAALQQAHEARLEILDTMAQVIEEPD-EMSDFAPRITSIKVPVSKIGEVIGPKG 622 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K I I E+TGA V+I++DGTV +++++ A +AA E I ++ + +P+V + + G VVK Sbjct: 623 KNINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVK 682 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + +FGAFV RDGL+HIS+L +R+ K DV+ G+ V V++ D D+RGKI L Sbjct: 683 IANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 739 >gi|118471281|ref|YP_886993.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium smegmatis str. MC2 155] gi|187610287|sp|A0QVQ5|PNP_MYCS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118172568|gb|ABK73464.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 763 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/714 (40%), Positives = 430/714 (60%), Gaps = 41/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A ET++L+ ++ KD DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASKNPKDHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D + V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AAS + L+GLPF GPV GA++ I+G +V P +++ ++ D+ V+G Sbjct: 142 AINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVEQLERAVFDMVVAGRIVGDGDS 201 Query: 181 TQDAVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAIS--------KLAKM 224 A++MVE EA + ++V +A++ G KP I+A+ + AK Sbjct: 202 ADVAIMMVEAEATENVVELVAGGAQAPTEAVVAEGLEAAKPFIKALCAAQQELADRAAKP 261 Query: 225 CAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 + P+ D + + + + ++ + E L + I K R + D++K +++ + E Sbjct: 262 AGEYPVFPDYE--ADVYDAVASVATEALAEALTIAGKTERNDRTDEIKVEVLERLA-EPY 318 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + E EI + F + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG Sbjct: 319 AGREKEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVIPRAHGSALFERG 378 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG L Sbjct: 379 ETQILGVTTLDMIKMAQQIDSLGPENTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAM Sbjct: 439 AERALVPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 498 Query: 465 GLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI + Sbjct: 499 GLVSDDVDVDGKVEKRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQV 558 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QAK RL IL+ M++ + ++ + PR+ + +P D+I VIG GK+I Sbjct: 559 LAGALSQAKDARLTILDVMAEAIDRPD-EMSPYAPRITTIKVPVDKIGEVIGPKGKMINS 617 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P+V + + G VVK DFG Sbjct: 618 ITEETGAQISIEDDGTVFVGAADGLSAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFG 677 Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 AFV RDGLVHIS+L +R+AK DVVK GD + V++ D D+RGKI L + Sbjct: 678 AFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKLRVEIADIDNRGKISLVL 731 >gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 741 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 280/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+ + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P +NEIL SR++DR +RPLF Y E V + ++ D P ++ + Sbjct: 73 FPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADGVDQPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AAS+A+ S +PF+ + +V +NG+YV+NP ++ + +D+ V T+D ++MVE E Sbjct: 133 AASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++++E ++ A+ H KP+ +LAK K+ V + +E++ + + ++ Sbjct: 193 MDEVTEQDLIQALKVAHEAIKPMCTMQEELAKELGKD--VKREYEHEVNDEDLRKQMNDE 250 Query: 252 LRVSCFIPEKYVRCKQ-IDDLKKKMVSYFSSEHSSWNEGEIVS------------VFEDI 298 L + K KQ D K+V+ F ++ + N ++ + ++D+ Sbjct: 251 LYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEEKHALAARYYDDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+TQ++ TLGT+ Sbjct: 311 LRDAMRRCILDEGKRLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGETQSLSTCTLGTKL 370 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD + F++HYNF P +TGE RREIGHG LA R + +P A Sbjct: 371 DEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 428 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 +PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ + + IL Sbjct: 429 YPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKNPGEEKYAIL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HIL +++ Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLT 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593 + ++E R +L PR+ + IP + I VIG GGK+I+ + E TG + ID+ G V Sbjct: 549 ETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEVDGKGKV 608 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ A I+AA IR+I VPEV +IY+G V VM +G FV +DGL+HIS++ Sbjct: 609 QVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMPGKDGLLHISEID 668 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLLD D + GK KLS +V+ Sbjct: 669 WKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVL 707 >gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus 4H-3-7-5] gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus 4H-3-7-5] Length = 741 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/694 (40%), Positives = 441/694 (63%), Gaps = 21/694 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKD-LDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y +ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++++NP R ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMSQMI 248 +++SE+ + DAI F H+ K A +LA+ K+ + + KD + L++++ M Sbjct: 194 MDEISEEEMADAIKFAHDHIKVQCAAQLRLAEAFGKKEVREYPAERKD-ADLKQKVHDMA 252 Query: 249 KEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTV 306 + + ++ K+ R ++K+++ + FS E + G++VS + + +R + Sbjct: 253 YDKVYAIAQAGSAKHERSAAFKEIKEEIKASFSEEELE-DFGDLVSKYYRAAEKAAIRDL 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 L++ +R+DGR + +R I ++V L HGS++F RG+TQA+ VTLGT D +D Sbjct: 312 TLNEGLRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMP 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 S +F +HYNF P TGE + SRRE+GHG LA+R + ++P A PYT+R+V Sbjct: 372 SHEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP--ADCPYTVRVV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGDED 484 SE+ ES+GSSSMATVC ++A+MDAG+ ++KPV+GIAMGL+ DG + +LSDI GDED Sbjct: 430 SEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDGASGKYAVLSDILGDED 489 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+K+ G+S I+V ALQQA+ GRLHIL+++++ ++ R Sbjct: 490 HLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARAGRLHILDKITETIAAPRE 549 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599 + E+ P++ + IP + I +IG GGKVI+ + ++TG + I++D G V+I + Sbjct: 550 DVKEYAPKMVGVRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILGTG 609 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657 I A I SIT P V YK +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 610 QEGINAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLHVSELAWERT 669 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDVV GD + VK D R K K+S K + Sbjct: 670 ENASDVVSMGDELDVKYFGIDKRTRKEKVSRKAL 703 >gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] Length = 713 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/696 (41%), Positives = 438/696 (62%), Gaps = 26/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G+T++LATV + G DF PL+V+Y+E+ A G+ Sbjct: 13 GRTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+L+RE R ++ EIL+SR++DR++RPLF + ET V + ++ D E P ++ + Sbjct: 73 FPGGFLKREGRASDYEILVSRLVDRALRPLFPDDFHAETFVNVMLVSSDGEDMPDALAGL 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+GQ+V+NP + L++ V+ T D ++MVE E Sbjct: 133 AASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQLATADLEIMVAATIDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECK-------PVIEAISKLAK--MCAKEPIVIDSKD-FSKLE 241 ++SE+V+L+A+ H K ++EA+ K K C +E KD ++K Sbjct: 193 MKEVSEEVLLEAMKVAHEAIKVHCQVQLELMEAVGKTVKRVYCHEENDEDLKKDIWAKTY 252 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +++ + SC +K+ R +K + ++ E ++ +G I + +++ + Sbjct: 253 DKVYA-----VAASCNT-DKHSRVDNFKAIKDEYIAALEPEVATEKKGLIGKYYHEVEKE 306 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD+ R+DGR + +R I ++V L HGS++F RG+TQ++ VTLGT+ DE+ Sbjct: 307 AMRRSILDEGKRLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKMDEK 366 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 VD + F++HYNF P +TGE RRE+GHG LA RA+ ++P+ +PY Sbjct: 367 LVDDALFKGKERFLLHYNFPPFSTGEAKASRGVGRREVGHGNLALRALKNMIPE--NYPY 424 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479 +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+ + G +F +LSDI Sbjct: 425 VVRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGKNFAVLSDI 484 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+HIL ++ + L Sbjct: 485 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILETALNQAKAGRMHILGKIQETL 544 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIA 596 R + PR+ +M IP + I VIG GGK+I+ + +TGA + I+ D G V+IA Sbjct: 545 EAPREDMKPNAPRIIVMMIPKEMIGAVIGPGGKIIQNMQVETGAVITIEEVGDQGRVEIA 604 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +++ A I+AA I+ I +PE+ + Y +V VM +GAFV F ++GL+HIS++ +R Sbjct: 605 ANNKAAIDAAIAKIKGIVAIPEIGETYPSKVKSVMPYGAFVEFMPGKEGLLHISEIDWKR 664 Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGD + VKLL+ D + GK KLS K + Sbjct: 665 IETMDQAGIKEGDMIDVKLLEIDQKTGKFKLSRKAL 700 >gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica CNB-440] gi|187611287|sp|A4X4P8|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica CNB-440] Length = 785 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 285/704 (40%), Positives = 417/704 (59%), Gaps = 33/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ R K+ DFFPLTV+ +ER YA Sbjct: 20 FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEHFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ V+ D VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----DA 184 + AAS + LSGLPF GP+ ++ +I+G +V P +E + + D+ V+G A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELVRATFDMVVAGRALPDGDVA 199 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + +V D + G KP I A S+LA++ AK Sbjct: 200 IMMVEAEATAHTAKLVADGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D D + + ++++ +ED+ + I K R + +D +K + V E Sbjct: 260 PVFLDYSD--DVYDAVTELAREDVAEALKIAGKADREEALDRIKARAVEELGPRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + + VR+ +L ++VR+DGR +R ++A+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS + +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 MGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 D----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R IL M + E+ + ++ PRV + IP D+I VIG G+ I I ++TGA+ Sbjct: 557 YEARQTILEVMQAAI-EAPATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ + +++ +AA E I I + +P+V + G VVK FGAF+ Sbjct: 616 ISIEDDGTIYVGATNGPAAQAAVERINGIANPTLPKVGDRFLGTVVKTAAFGAFISLLPG 675 Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +RV K D + GD V V++ D D RGKI L Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDQRGKIYL 719 >gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis HTCC2601] gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. HTCC2601] Length = 463 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 249/459 (54%), Positives = 337/459 (73%), Gaps = 10/459 (2%) Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 M + ++ +R + I +K R + K+++ S E + + S + +++ V+ Sbjct: 1 MKGLGEDKMRAAYAITDKQQRVAAVSAAKEEIKGQLSEEQ--LEDANLGSALKKLESTVL 58 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ K R+DGR + VR I ++ +L RTHGSSLF RG+TQA+VV TLGT +DEQ + Sbjct: 59 RADVVKNKRRIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQII 118 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D+L G R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+ VLP FPYT+ Sbjct: 119 DALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 178 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDISGD 482 R+VSEITES+GSSSMA+VCG SL++MDAGVP+ PVAG+AMGLV +D ++ IL+DI GD Sbjct: 179 RLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGD 238 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT++GIT++QMD+K+ GI+ IM AL QAK GR+HIL+EM K LSE+ Sbjct: 239 EDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHILSEMGKALSEA 298 Query: 543 RLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599 GEF+ PR+E+M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS + Sbjct: 299 ----GEFSVHAPRIEMMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGLIKIASPN 354 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 I+ A +MI SI PE K+YKG+VVK++DFGAFV+F G RDGLVH+SQ+ R+ Sbjct: 355 GESIQKAYDMIHSIVAEPEEGKVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNH 414 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 SDV+KEG V+VKLL FDDRGK++L+MK+VDQ TG+ + Sbjct: 415 PSDVLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEV 453 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 23/193 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVY----DRSLKD---GQDFFPLTVNYQER 66 RP++ ET + R + G+ L T GET L D + D G ++Y Sbjct: 78 RPIQSETSVLPR-THGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRSNFLLHYNFP 136 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLES 124 Y+VG++ R P EI ++ R+++ + + +++ + + + S Sbjct: 137 PYSVGEVG-----RVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRLVSEITESNGSS 191 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL--DEDQ-GSLDLFV 178 S + S+ S ++M +G+P + PV G + + +G+Y + + DED G +D V Sbjct: 192 S--MASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGDEDHLGDMDFKV 249 Query: 179 SGTQDAVLMVELE 191 +GT++ + ++++ Sbjct: 250 AGTENGITSLQMD 262 >gi|227542327|ref|ZP_03972376.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181927|gb|EEI62899.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 749 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 291/717 (40%), Positives = 432/717 (60%), Gaps = 43/717 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+DG+V A E T++LAT + ++G DFFPLTV+ +ER Y Sbjct: 29 DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 88 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ + IL R+IDR +RP F K +NE Q +I VM D V Sbjct: 89 AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 148 Query: 129 VSMVAASAALMLSGLPFEGPVVG------AQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181 V++ AASAA LSGLP G V G A D+ +GQ+V P +++ + +L ++ V+G Sbjct: 149 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 208 Query: 182 QD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----L 221 + A++MVE A + + V D + G KP I+ + + L Sbjct: 209 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 268 Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 +K+ AK+ PI D D + S+ I E + + + +D + +K+ Sbjct: 269 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 328 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + F E + E +I + + + ++VR +L + R+DGRD + +RD+S +V L+ R Sbjct: 329 LPKFEEEDETA-EKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRA 387 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL + EQ +DSLS ++ HYNF P +TGE R+G+P Sbjct: 388 HGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPK 447 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 448 RREIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 507 Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PV GIAMGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 508 KAPVTGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDG 567 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I N++ ALQQA RL IL+ M++V+ E ++ +F PR+ + +P +I VIG G Sbjct: 568 IPSNVLAAALQQAHEARLEILDTMAQVIEEPD-EMSDFAPRITSIKVPVSKIGEVIGPKG 626 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K I I E+TGA V+I++DGTV +++++ A +AA E I ++ + +P+V + + G VVK Sbjct: 627 KNINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVK 686 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + +FGAFV RDGL+HIS+L +R+ K DV+ G+ V V++ D D+RGKI L Sbjct: 687 IANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 743 >gi|299142521|ref|ZP_07035652.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735] gi|298575956|gb|EFI47831.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735] Length = 748 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/698 (40%), Positives = 418/698 (59%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++NEIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 64 FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PFE + +V ING+YV++P + +DL V+ T+D ++MVE E Sbjct: 124 AASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVAATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++ A+ KP+ E +L+K + V D +E++ + IK + Sbjct: 184 MKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEINDEDLREQIKNE 241 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299 L + EK+ R D + + + + H+ +E E +ED+ Sbjct: 242 LYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHNELSEEDLEEKHAEATRYYEDVM 301 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ R+DGR + +R I +V L HGS++F RG+T ++ TLGT+ D Sbjct: 302 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 361 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ VD + F++HYNF P +TGE RREIGHG LA R + +P+ + Sbjct: 362 EKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 419 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + ILS Sbjct: 420 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 479 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN M + Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 539 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594 +SE R +L PR+E IP + I +IG GGK+I+ + E TGA + ID+ G V Sbjct: 540 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEDTGATITIDETDGKGHVT 599 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I AA I++I VPEV ++Y+G V +M +G FV RDGL+HIS++ Sbjct: 600 VSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGRDGLLHISEIDW 659 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD V VKL++ D + GK KLS +V+ Sbjct: 660 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 697 >gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BAL38] gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BAL38] Length = 719 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 288/692 (41%), Positives = 423/692 (61%), Gaps = 20/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETGR+A+Q+DG+V+ G+TV+L TVV R G DF PLTV+Y+E+ A G+ Sbjct: 15 GRSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP+++E+L R++DR +RPLF Y E QV+I +M HD + P ++ + Sbjct: 75 FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEDVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAAL LS +PFE + A+V I+G++++NP R + +D+ + + D++ MVE E Sbjct: 135 AASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSIAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI------DSKDFSKLEEEMS 245 ++SE +L+AI F H K I A +LA K+ + D ++K++ Sbjct: 195 MKEISEAEMLEAIKFAHEHIKVQIAAQERLATAFGKKEVRTYETEKSDDAIYAKVKAAAY 254 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304 I ++ K+ R D +K+++ + F+ E + N G++VS F + VR Sbjct: 255 DKI---YAIASKGSAKHERSAAFDAVKEEVKALFTEEELAEN-GDLVSKYFYKTNKEAVR 310 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V LD R+DGR + +R I +V L HGS+LF RG+TQA+ TLGT + +D Sbjct: 311 NVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQID 370 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A+ PYT+R Sbjct: 371 SPSEQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--AENPYTIR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 IVSE+ ES+GSSSMATVC +LALMDAGV + +PV+GIAMGL+ DG+ F +LSDI GDED Sbjct: 429 IVSEVLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAVLSDILGDED 488 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+KI G+ IM AL QA+ GRLHIL ++++ L++ Sbjct: 489 HLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTETLAKPNT 548 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLA 601 + P++ + IP I +IG GGKVI+ + + TG + +D+ G V+I + Sbjct: 549 DVKVHAPKIIMRTIPGAFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILGTDPD 608 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659 I A I SI P + + Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 609 GIAAVLAKIDSIIFKPAMGEAYEVKVIKMLDFGAVVEYTQAPGNEVLLHVSELAWERTEN 668 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +DVV GD VK L D + K K+S K + Sbjct: 669 VTDVVNMGDVFMVKYLGVDPKTRKEKVSRKAL 700 >gi|323343826|ref|ZP_08084053.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC 33269] gi|323095645|gb|EFZ38219.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC 33269] Length = 791 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/701 (40%), Positives = 430/701 (61%), Gaps = 29/701 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + +++EIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDSEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+GP+ ++ ING+YV++P + + +D+ V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFDGPISEVRIARINGEYVVDPTFQQMKEADMDIMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++SE ++DA+ + KP+ + ++L+K + V +EE+ + I ++ Sbjct: 193 MNEVSEQDLIDALKVAADAIKPMCDLQTELSKEFGTD--VKREYCHEVNDEELREQINKE 250 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNE-----GEIVSVFEDI 298 L + +K+ R D+L + + + H+ S +E E +ED+ Sbjct: 251 LYQPAYDITKQALDKHARQDAFDELITNFLEKYDAAHAESLSADELEEKHAEATRYYEDV 310 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +R +LD+ R+DGR ++ +R I +V L HGS++F RG+T ++ TLGT+ Sbjct: 311 MRDAMRRCVLDEGKRLDGRKTDEIRPIWCEVSALPMPHGSAIFQRGETMSLSTCTLGTKM 370 Query: 359 DEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 DE+ VD + G QR F++HYNF P +TGE RREIGHG LA R + +P Sbjct: 371 DEKLVDDVLEKGYQR--FLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP-- 426 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474 A FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP++KPV+GIAMGL+K+ + + Sbjct: 427 ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMAKPVSGIAMGLIKNPGEEKYA 486 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR +IL + Sbjct: 487 VLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREYILGK 546 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591 M + +SE R +L PR+ IP + I VIG GGK+I+ + E TGA + ID+ G Sbjct: 547 MMETISEPRTELKPQVPRIVAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDGVG 606 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V++++ I+AA I+SI VPEV ++Y+G V VM +G FV +DGL+HIS+ Sbjct: 607 KVQVSAPDKDAIDAALAKIKSIVAVPEVGEVYEGTVRSVMPYGCFVEIMPGKDGLLHISE 666 Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +R+ + +KEGD + VKL++ D + GK KLS +V+ Sbjct: 667 IDWKRLETVEEAGIKEGDKIQVKLMEIDPKTGKYKLSHRVL 707 >gi|302344869|ref|YP_003813222.1| polyribonucleotide nucleotidyltransferase [Prevotella melaninogenica ATCC 25845] gi|302149149|gb|ADK95411.1| polyribonucleotide nucleotidyltransferase [Prevotella melaninogenica ATCC 25845] Length = 742 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 281/699 (40%), Positives = 425/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ + Sbjct: 64 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGL 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +P E +V +NG+YV+NP ++ + +DL V T+D ++MVE E Sbjct: 124 AASAALAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V + + +EE+ + +++ Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRKA 241 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298 +C+ +K R + D +K + + H+ +E + I F D+ Sbjct: 242 TYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFADV 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I ++ L HGSSLF RG+T ++ TLGT+ Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKM 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA R + +P A Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK R HILN M+ Sbjct: 480 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMT 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 + ++E R ++ PR+ + IP + I VIG GGK+I+ + E+TGA + I++ G V Sbjct: 540 ETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I++I VPE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLL+ D + GK KLS +V+ Sbjct: 660 WKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVL 698 >gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter atlanticus HTCC2559] gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter atlanticus HTCC2559] Length = 741 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 277/696 (39%), Positives = 435/696 (62%), Gaps = 25/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++V+NP R + +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQLAESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIK 249 +++SE+ + +AI F H K EA KLA+ K+ ++++++ + +E++++ + Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCEAQVKLAEAFGKK----ETREYAAEREDEDLAKKVH 249 Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + K+ R + D+K ++++ FS E I + + +R Sbjct: 250 DMAYDKVYAIAQAGSAKHERSQAFSDIKDEIIATFSEEEQEDFGSLISKYYYKAEKAAIR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L++ +R+DGR + +R I +V L HGSS+F RG+TQA+ VTLGT D +D Sbjct: 310 DLTLNEGLRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANMID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P+ PYT+R Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482 +VSE+ ES+GSSSMATVC ++A+MDAGV + KPV+GIAMGL+ D + + +LSDI GD Sbjct: 428 VVSEVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAMGLISDAESGKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+K+ G+S I+V AL+QA+ GRLHIL +++ +S+ Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTISQP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 + + P++ + IP + I +IG GGKVI+ + ++TG + I++D G ++I Sbjct: 548 NEDVKSYAPKMVSVRIPNEYIGAMIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 + I+A I S+T P+V +Y+ +V+K++DFGA V + A + L+H+S+L+ E Sbjct: 608 TGQEGIDAVLAKIDSVTFKPQVGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 R SDVVK GD + VK D R K K+S K + Sbjct: 668 RTENVSDVVKLGDIIDVKYFGIDKRTRKEKVSRKAL 703 >gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 719 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/695 (41%), Positives = 435/695 (62%), Gaps = 24/695 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + LETG++A+Q+DGA++ T++LATV + DF PL V Y+E+ A G+ Sbjct: 14 GRTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPLQVEYKEKFSAFGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE R ++ EIL R+IDR++RPLF + Y +E V I + D E P ++ + Sbjct: 74 FPGGFTKREGRASDYEILTCRLIDRTLRPLFPRDYHSEVFVNIILFSSDGEDIPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+G++ +NP E + +D+ V T D ++MVE E Sbjct: 134 AASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGELAKADMDIMVGATADNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 N++SE+ +L+AI H KP +A +LA++ + ++ +EE+ IK Sbjct: 194 MNEVSEEEMLEAIKAAHEAIKPQCKAQIELARIVGT--TIKNTYSHEVNDEELRSDIKTK 251 Query: 252 LRVSCFIPEKYVRCKQ---------IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 L + K +CK I++ KK+ SE + I + +I+ +V Sbjct: 252 LYDKVYAVAKSGQCKNKRIEAFQTIIEEYKKQFKEKELSEEKIFL---IKRYYYEIEKEV 308 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R +LD+ +R+DGR + +R I ++V + HGS++F RG+TQA+ VTLGT+ +E+ Sbjct: 309 MRRCILDENIRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATVTLGTKLNEKI 368 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +D + + F++HYNF P ATGE RREIGHG LA RA+ P++P +PY Sbjct: 369 IDDVLINDKERFLLHYNFPPFATGEARAQRGIGRREIGHGNLAHRALKPIIPN--NYPYV 426 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDIS 480 +R+VS+I ES+GSSSMATVC +L+LMDAGV I +PV+GIAMGL+ K+G + ILSDI Sbjct: 427 IRVVSDILESNGSSSMATVCAGTLSLMDAGVQIKRPVSGIAMGLIFEKEGSKYAILSDIL 486 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLG MDFKVAGT GITA QMD+KI G+S ++ AL QAK+GR +IL++M + + Sbjct: 487 GDEDHLGDMDFKVAGTKKGITATQMDIKIDGLSYEVLERALSQAKQGREYILDKMLETIP 546 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIAS 597 E R L TP++EI+ IP + I +VIG GGK+I+ + E+TG + I++ G ++I Sbjct: 547 EPRTDLKPHTPKIEIIIIPKEFIGSVIGPGGKIIQRLQEETGTTITIEEIEKMGRIEIFG 606 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 + I+AA I+ I VPEV +IY+G++ +M +GAF+ F ++GL+HIS++S + + Sbjct: 607 DNKKSIDAALTRIKGIVSVPEVGEIYEGKIRSIMPYGAFIEFLPGKEGLLHISEISWKHL 666 Query: 658 AKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + + EGD + +KL+D D + GK KLS K++ Sbjct: 667 ESIEEAGLNEGDFIKIKLVDIDSKTGKFKLSHKIL 701 >gi|288801722|ref|ZP_06407164.1| polyribonucleotide nucleotidyltransferase [Prevotella melaninogenica D18] gi|288335764|gb|EFC74197.1| polyribonucleotide nucleotidyltransferase [Prevotella melaninogenica D18] Length = 742 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 280/699 (40%), Positives = 425/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ + Sbjct: 64 YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGL 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASA+L S +P E +V +NG+YV+NP ++ + +DL V T+D ++MVE E Sbjct: 124 AASASLAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE ++ A+ H KP+ E +L+K C + V + + +EE+ + +++ Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRKA 241 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298 +C+ +K R + D +K + + H+ +E + I F D+ Sbjct: 242 TYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFADV 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 Q +R +LD RMDGR ++ +R I ++ L HGSSLF RG+T ++ TLGT+ Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKM 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA R + +P A Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + +L Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK R HILN M+ Sbjct: 480 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMT 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593 + ++E R ++ PR+ + IP + I VIG GGK+I+ + E+TGA + I++ G V Sbjct: 540 ETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGKV 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I++I VPE+ ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLL+ D + GK KLS +V+ Sbjct: 660 WKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVL 698 >gi|260400856|gb|ACX37015.1| polynucleotide phosphorylase/polyadenylase [Nonomuraea sp. ATCC 39727] Length = 780 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/720 (39%), Positives = 435/720 (60%), Gaps = 39/720 (5%) Query: 1 MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQ 54 M VHT E + R ++ ETGR+ARQ+ G+ +A +T+VL+ ++ K+ Sbjct: 1 MEGVHTAEAVIDNGSFGTRTIRFETGRLARQAAGSAVAYLDSDTMVLSATTASKTPKEQF 60 Query: 55 DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114 DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ Sbjct: 61 DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120 Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173 VM + + VV++ AAS + L+GLPF GP+ G +V I+GQ+V P E ++ + Sbjct: 121 ATVMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIDGQWVAFPTHPELERAT 180 Query: 174 LDLFVSGT-----QDAVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216 D+ V+G A++MVE E+ + + +V + + G KP I E Sbjct: 181 FDMVVAGRVLDDGDVAIMMVEAESTKDTLKLVAEGAVAPTEETVAQGLEAAKPFIKVLCE 240 Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272 A S++A++ AKE P+ +D + + + + IK +L + I K R +++ K Sbjct: 241 AQSRIARVAAKETAEYPVFLDYQ--ADVYAAVEAAIKTELAAALTIAGKQERENELEKTK 298 Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332 E E EI + F + K++R ++++ VR+DGR ++ +R +SA+V ++ Sbjct: 299 ALAAEKLLPEFEG-REKEISAAFRSVMKKLMRERVINEGVRIDGRGTKDIRALSAEVHVV 357 Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392 R HGS+LF RG+TQ + + TL EQ +D+L+ + +M +YNF P +TGE R+G Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQVIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417 Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452 +P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S++AL+DAG Sbjct: 418 SPKRREIGHGALAERALIPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477 Query: 453 VPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 VP+ + VAGIAMGL+ +GD ++ L+DI G ED +G MDFKVAGT ITA+Q+D K+ G Sbjct: 478 VPLKEMVAGIAMGLIGEGDTHYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDG 537 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I +++ AL+QAK RL IL+ M + + +S ++ PR+ + +P D+I VIG G Sbjct: 538 IPASVLAGALKQAKGARLAILDVMQEAI-DSPAEMNPTAPRIITIKVPVDKIGEVIGPKG 596 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I + TGA++ I+DDGT+ I ++ EAAR I +I + +PEV + Y G VVK Sbjct: 597 KMINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVK 656 Query: 630 VMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + FGAF+ +DGL+H+SQ+ +R+ DV+ G+ + V++ + D RGK+ L Sbjct: 657 IAAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMSVGEKIQVEIAEIDGRGKLSL 716 >gi|290957009|ref|YP_003488191.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces scabiei 87.22] gi|260646535|emb|CBG69632.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces scabiei 87.22] Length = 741 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 289/712 (40%), Positives = 427/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 19 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 78 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 79 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 138 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V IN Q+V P E + D+ V+G +D Sbjct: 139 AINAASASTQLAGLPFSGPIGGVRVALINNQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 198 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V + + G + KP I+ + SK AK + Sbjct: 199 AIMMVEAEATEKTIQLVQGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLASKAAKPTGE 258 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 P+ +D +D + E +S +K++L + I K R ++D +K +K++ F Sbjct: 259 FPVFLDYQD--DVLEALSAAVKDELTQALTIAGKQDREAELDRVKGLAAEKLLPQFEG-- 314 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 315 ---REKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 371 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 372 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 431 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 432 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 491 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 492 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 551 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 552 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 610 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I + ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 611 DTGAEITIEDDGTIYIGAQQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 670 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DVV G V V++ + D RGK+ L Sbjct: 671 SLLPGKDGLLHISQIRKLAGGKRVENVEDVVGVGSKVQVEIAEIDSRGKLSL 722 >gi|183601888|ref|ZP_02963257.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis HN019] gi|219682802|ref|YP_002469185.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190378|ref|YP_002967772.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195784|ref|YP_002969339.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254782707|sp|B8DVV8|PNP_BIFA0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|183218773|gb|EDT89415.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620452|gb|ACL28609.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis subsp. lactis AD011] gi|240248770|gb|ACS45710.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250338|gb|ACS47277.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178101|gb|ADC85347.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793365|gb|ADG32900.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium animalis subsp. lactis V9] Length = 873 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 290/715 (40%), Positives = 433/715 (60%), Gaps = 47/715 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+ARQ+DGAV A + ++VL+T S K+ DFFPLTV+ +E+ YA GK Sbjct: 21 RTVRFETGRLARQADGAVAAYLDDDSMVLSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE RP+ IL R+IDR +RPLF +NE QV+ V+ + E S V+++ Sbjct: 81 IPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPEDSYDVLALN 140 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD-AVL 186 AASA+ ++SGLPF GPV G ++ I+GQ+V PR E ++ ++ V+G + D A+ Sbjct: 141 AASASTLISGLPFTGPVGGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVESGDVAIA 200 Query: 187 MVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPIVID 233 M+E A + + +++ D + G KP I +A ++L ++ AKE Sbjct: 201 MIEAGAGKNAWNLIYDEGQQKPDEEVVAGGLEAAKPFIKVLCDAQNELKRLAAKE----- 255 Query: 234 SKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 +++F+ E + ++ DL + I EK R ++I ++K+++ S E + Sbjct: 256 TREFTLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIAEIKQRVKDTLSVEFTDM 315 Query: 287 NE----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E EI + F+++Q ++VR +L + R+DGR +R +SA++ ++ R HGS+LF Sbjct: 316 DEMEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEIDVVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + + TL + EQ +D+LSG +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGITTLNMLKMEQQIDALSGPTTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +AI PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGI Sbjct: 436 ALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++ Sbjct: 496 AMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTADFITALQLDTKLDGIPADVLA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 AL+QA R IL +++ + + ++ F PR+ +P D+I VIG GK+I I Sbjct: 556 GALKQAHEARKTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E TGA++ I+DDGTV I+S E A+++I I + VP+ + YKG VVK FGAF Sbjct: 615 EDTGAEIAIEDDGTVYISSEGGEAAEKAKQIIDEIANPHVPQAGETYKGTVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 V+ DGL+HISQ+ +R+ DV+KEGD+V V + DDRGKI L++ Sbjct: 675 VNLTPGIDGLLHISQIRNLADGQRIDAVEDVLKEGDSVEVVVQGVDDRGKISLAI 729 >gi|312194991|ref|YP_004015052.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia sp. EuI1c] gi|311226327|gb|ADP79182.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia sp. EuI1c] Length = 727 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+A+Q+ G+V+A G+T+VL+ ++ K+ DFFPLTV+ +ER YA G+I Sbjct: 19 RTIRFETGRLAKQAAGSVVAYLGDTMVLSATTASKNPKENLDFFPLTVDVEERMYAAGRI 78 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ V+ D E+ VV++ A Sbjct: 79 PGSFFRREGRPSEDAILTCRLIDRPLRPSFTKGLRNEIQVVATVLALDPETLYDVVAINA 138 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ +L+GLPF GPV +V Y++GQ+V P E + + D+ V+G + A++ Sbjct: 139 ASASTLLAGLPFTGPVGATRVGYVDGQWVAFPTHAELARATFDMVVAGRVLEDDSDVAIM 198 Query: 187 MVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK--------LAKMCAKEPI 230 MVE EA + ++ D + G KP I + + AK + P+ Sbjct: 199 MVEAEATPGTVALLADGAPAPTEDVVAAGLEAAKPAIRELCRAQRELAAAAAKPVREYPV 258 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 +D D + + ++ + ++L + I K R ++D +K V S+ E E Sbjct: 259 FLDYTD--DVLDVLTNAVGDELAAALRIAGKQERETELDRVKALAVEKVGSQFDG-REKE 315 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I + + + K+VR +++ +R+DGR + +R +SA+V + R HGS+LF RG+TQ + Sbjct: 316 IGAAYRALTKKLVRKRVVEDGLRIDGRATTEIRALSAEVDYVPRVHGSALFERGETQILG 375 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ +D+L+ + +M +YNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 376 VTTLAMLRLEQTIDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+++G Sbjct: 436 PVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLIREG 495 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI N++ ALQQA+ RL Sbjct: 496 DAFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPANVLAAALQQARAARLA 555 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+ M++ + E ++ + PRV + IP D+I VIG GK+I I +GA++ ++DD Sbjct: 556 ILDVMAEAI-EGPDEMSQHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614 Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 GT+ I ++ E AR I +I + +PEV + Y G +VK+ +FGAFV +DGL+H Sbjct: 615 GTIYIGAADGVSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674 Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +S+L +RV K DV+ G + V++ + D RGKI LS Sbjct: 675 VSKLKQLSGGKRVEKVEDVLNVGQKLQVEITEIDSRGKISLS 716 >gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola DSM 14237] gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola DSM 14237] Length = 747 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 281/694 (40%), Positives = 427/694 (61%), Gaps = 23/694 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPEAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++V+NP R + L++ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVARVNGEFVINPTRAQLAESDLEMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQMIK 249 +++SE+V+ DAI F H K I A +LA+ K+ ++++++ E EE+ + I Sbjct: 194 MDEISEEVMADAIKFAHEAIKVQIAAQLRLAEAFGKK----ETREYATAEVNEELEKRIH 249 Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + C+ K R ++K+++ + F+ E + + + + + VR Sbjct: 250 DLAYDKCYAIAKKGTSKAERTNAFAEVKEEVKASFTEEEMAEFGHLVGGYYRKAEKEAVR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L + +R+DGR ++ +R I ++ L THGS++F RG+TQA+ VTLGT D +D Sbjct: 310 ELTLSEGLRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S +F +HYNF P TGE + SRRE+GHG LA+R + ++P + PYT+R Sbjct: 370 MPSFEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIP--SDCPYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ ES+GSSSMATVC ++ALMDAGV + +PV+GIAMGL+ DGD + +LSDI GDED Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAVLSDILGDED 487 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+KI G+S I+V AL+QA+ GRLHIL +++ +S Sbjct: 488 HLGDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQARDGRLHILGKITDTISTPAE 547 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599 + P++ IP + I +IG GGKVI+ + ++TG + I++D G V+I Sbjct: 548 DVKPHAPKMVTRRIPNEFIGALIGPGGKVIQEMQKETGTTIVINEDPVTEEGIVEILGVG 607 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657 I+A I SI PE+ K Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 608 QEGIDAVLAKIDSILFKPELGKSYEVKVIKMLDFGAVVEYAEAPGNEVLLHVSELAWERT 667 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDVV GD VK D + K K+S K + Sbjct: 668 ENVSDVVNMGDVFEVKYFGVDPKTRKEKVSRKAL 701 >gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1] gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1] Length = 746 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/696 (40%), Positives = 432/696 (62%), Gaps = 25/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD E P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDPEVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V ING++++NP R ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIK 249 +++SE+ + +AI F H K A +LA+ K+ +++++ + +EE++Q I Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIGKK----ETREYEPERADEELAQKIH 249 Query: 250 EDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + K K+ ++K+++++ F+ E G I + + VR Sbjct: 250 DMAYDKVYAVAKAGSSKKERGMAFSEIKEEIIASFTEEEIEDFGGLISKYYSKAEKAAVR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L++ +R+DGR ++ +R I +V L THGSS+F RG+TQA+ VTLGT + +D Sbjct: 310 DLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P+ PYT+R Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482 +VSE+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ D D + +LSDI GD Sbjct: 428 VVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+K+ G+S I+V AL+QA+ GRLHIL +++ ++ Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAAP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 + P++ IP D I +IG GGKVI+ + ++T + I++D G V+I Sbjct: 548 NENVKAHAPKMITRTIPGDYIGALIGPGGKVIQELQKETNTTIVINEDPVTEEGIVEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 + I+A I SIT PE IY+ +VVK++DFGA V + A + L+HIS+L+ E Sbjct: 608 TDQEGIDAVLAKIDSITFKPEKGSIYEVKVVKMLDFGAVVEYTEAPGNEVLLHISELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 R SD+VK GD + VK D + K K+S K + Sbjct: 668 RTNNVSDIVKMGDILDVKYFGIDPKTRKEKVSRKAI 703 >gi|302528525|ref|ZP_07280867.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4] gi|302437420|gb|EFL09236.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4] Length = 749 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/719 (39%), Positives = 431/719 (59%), Gaps = 36/719 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E T++L+ + K+ DFFPLTV+ +ER YA Sbjct: 21 FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKEHFDFFPLTVDVEERMYA 80 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL +R+IDR +RP F+ +NE QV+I V + + V+ Sbjct: 81 AGRIPGAFFRREGRPSTDAILTARLIDRPLRPSFADGLRNEIQVVITVQSLNPDDPYDVL 140 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ ++GLPF GPV G +V I Q+V P + ++ + ++ V+G A Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALIEDQWVAFPTWPQLEKATFNMVVAGRIVGDDVA 200 Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE---- 228 ++MVE E + + D++ A+ G KP I EA +LA AK Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAEGLEAAKPFIRVLCEAQQRLAADAAKPTGEF 260 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ + + E ++ + ++L + I K R D++K ++ E Sbjct: 261 PVYPAYQ--PDIYEAVAAIASDELAKALQIAGKQERDAATDEVKATVLEKLGLGEGEAFE 318 Query: 289 G---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 G E+ F+ + K++R +L +K+RMDGR +R +SA+V ++ R HGS+LF RG+ Sbjct: 319 GRDKEVGGAFKALTKKIMRNRVLTEKIRMDGRGLTDIRQLSAEVAVVPRAHGSALFERGE 378 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + + TL EQ +DSLS ++ HYNF P +TGE R+G+P RREIGHG LA Sbjct: 379 TQILGITTLNMLRMEQQIDSLSPETTKRYLHHYNFPPFSTGETGRVGSPKRREIGHGMLA 438 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP+ +FPY +R VSE S+GS+SM +VC S++ L++AGVP+ PVAGIAMG Sbjct: 439 ERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMGLLNAGVPLKAPVAGIAMG 498 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D ++ L+DI G ED LG MDFKVAGT ITA+Q+D K+ GI ++ AL Sbjct: 499 LVSDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAAL 558 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +QAK RL IL+ +++ + + ++ + PRV + IP D+I VIG GK+I I E+T Sbjct: 559 KQAKDARLTILDVIAEAI-DGPDEMSPYAPRVTSVKIPVDKIGEVIGPKGKMINSITEET 617 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGT+ + ++ EAA I +I + +P+V + + G VVK FGAFV Sbjct: 618 GADISIEDDGTIYVGAADGPSAEAAIGKINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 677 Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 +DGLVHIS+L +R+AK DVV GD + V++ D D+RGKI L + V +++ KP Sbjct: 678 LPGKDGLVHISKLGNGKRIAKVEDVVNVGDKIRVEIADIDNRGKISL-IVVKEEDAAKP 735 >gi|289643638|ref|ZP_06475751.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia symbiont of Datisca glomerata] gi|289506529|gb|EFD27515.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Frankia symbiont of Datisca glomerata] Length = 733 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/718 (39%), Positives = 432/718 (60%), Gaps = 42/718 (5%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++ ETGR+ARQ+ G+ +A G+T+VL+ + K+ DFFPLTV+ +ER YA G+I Sbjct: 23 RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 82 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ V+ D ++ VV++ A Sbjct: 83 PGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQIVATVLALDPDTLYDVVAINA 142 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 ASA+ L+GLPF GP+ +V Y++G ++ P E ++ + D+ V+G + A++ Sbjct: 143 ASASTTLAGLPFSGPIGATRVGYVDGTWIAFPTHAELERATFDMVVAGRVLDDGSDVAIM 202 Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK----LAKMCAKE----PI 230 MVE EA + ++ D + G KP I + + LA+ AK P+ Sbjct: 203 MVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIRELCRAQRGLAERAAKPTRDFPL 262 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSW 286 ID D + E +S + ++L + I K R ++D ++ +K+V F Sbjct: 263 FIDYHD--DVLEALSIAVGDELAAALRIAGKQEREAELDRVRLLAAEKVVGQFEG----- 315 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E EI + + + K+VR ++ VR+DGR +R+++A+V + R HGS+LF RG+T Sbjct: 316 REKEIGAAYRALTKKLVRQRIVADGVRIDGRGVTEIRELAAEVDFIPRVHGSALFERGET 375 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 376 QILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 435 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ VAGIAMGL Sbjct: 436 RALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGL 495 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 +++GD F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ ALQQA+ Sbjct: 496 IREGDQFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPATVLAGALQQARA 555 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RL IL+ M++ + + ++ PRV + IP D+I VIG GK+I I +GA++ Sbjct: 556 ARLAILDVMAEAI-DGPDEMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEIT 614 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++DDGT+ I + E+AR I +I + +PEV + Y G +VK+ FGAFV +D Sbjct: 615 VEDDGTIYIGAQDGVSAESARSAINAIANPQLPEVGERYLGTIVKITIFGAFVSLTPGKD 674 Query: 645 GLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 GL+HIS+L +RV K +VV+ G + V++ D D RGKI LS VV+ G P+ Sbjct: 675 GLLHISKLKQLSGGKRVEKVEEVVQVGQKLQVEITDIDSRGKISLS-PVVEDADGVPV 731 >gi|297202779|ref|ZP_06920176.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus ATCC 29083] gi|197716767|gb|EDY60801.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus ATCC 29083] Length = 740 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/708 (40%), Positives = 421/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRALEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + E + + G KP I+ + SK AK + Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLASKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ +K +L + I K R ++D +K E Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + ++VR ++ +K R+DGR +R ++A+V + R HGS++F RG+TQ Sbjct: 314 EKEISAAYRSLTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 DG+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I + EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] Length = 793 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 279/692 (40%), Positives = 433/692 (62%), Gaps = 20/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++ARQ+DGAV G ++LATVV ++ K GQ FFPLTV+YQE+ + G+ Sbjct: 15 GRIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVDYQEKFASAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + +RE + ++ E+LISR+IDR++RPLF Y E QV+++++ D E P ++ + Sbjct: 75 IPGSFFKREGKLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVSLISSDPEVMPDALACL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +P + + +V I+GQ V+NP R ++ +D + T+ ++MVE E Sbjct: 135 AASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEKADMDFIIGATEKNIMMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMS 245 + + SE+ ++ AI H + ++A +L + V ++F K L+ +++ Sbjct: 195 SKECSEEDIIKAIEVAHEAIRVQVKAQEELREKAG----VSGKREFEKPYANEELKAKIA 250 Query: 246 QMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 +E L V+ K+ R D + +++V + E + + F ++ +V+R Sbjct: 251 AFAQERILAVAKSASAKHDRADAFDKISEELVEHL-GELPEEDAPLVGKYFHSLEKEVIR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++LD+ VR+DGR + VR ++ + +L HGS+LF RG+TQ++ VTLGT +DE + Sbjct: 310 NMILDQSVRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSE 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S + ++ F++HYNF P +TGEV M P RRE+GHG LA R++ ++P + ++ YT+R Sbjct: 370 SAATSKYTKFILHYNFPPFSTGEVKPMRGPGRREVGHGNLAMRSLKQMMPGS-EYAYTVR 428 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482 +VS+I ES+GSSSMATVC SLALMDAGVP+ K V+G+AMGL+ D + +L+DI GD Sbjct: 429 VVSDILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAMGLISRASDGKWAVLTDILGD 488 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GI +QMD+K+ G+S ++M AL+QA+ GRLHI++ M + + Sbjct: 489 EDHLGDMDFKVTGTRDGICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAMYTAMPAA 548 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIASSS 599 R + PR+E + I + I VIG GGKVI+ I +TG +NI+ + G V I S+ Sbjct: 549 RPEPKPHAPRMEKLIIDREFIGAVIGPGGKVIQEIQRETGTNINIEEVGETGEVSIFSAQ 608 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + A E I+ I VPE+ + Y+ V VM +GAFV F + GL+HIS++S +R+ Sbjct: 609 KEGLMKALEWIKGIVAVPEIGETYESTVKSVMPYGAFVEFLPGKQGLLHISEVSWKRLET 668 Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 V+ EG+ V VKL+ D + GK KLS +V+ Sbjct: 669 MEGVLTEGEKVKVKLVGTDPKTGKFKLSRRVL 700 >gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens FB035-09AN] gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens FB035-09AN] Length = 739 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 276/699 (39%), Positives = 423/699 (60%), Gaps = 25/699 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 4 GRNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++EIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 64 FPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVFVSVMLLSADGVDMPDALAGF 123 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +P E P+ +V +NG+Y++NP ++ + +D+ V T+D ++MVE E Sbjct: 124 AASAAMQCSDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMDIMVGATKDNIMMVEGE 183 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++DA+ H+ KP+ E +LAK + + + +EE+ + +K++ Sbjct: 184 MEEVSEQDLIDALKAAHDAIKPMCEIQEELAKELGTDVKREYCDEVN--DEELREQVKKE 241 Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298 +C+ +K R + + +K V + + H+ +E +I F D+ Sbjct: 242 TYDACYAQAQSGDDDKKHRAEVYEKIKADFVERYDAAHTDLSEDDLEEKHAQIDRYFADV 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +R +LD RMDGR + +R I +V L HGS+ F RG+T A+ TLGT+ Sbjct: 302 ERDSMRRSVLDTGKRMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTKL 361 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DE+ VD++ F++HYNF P TGE RREIGHG LA R + ++P+ Sbjct: 362 DEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGMIPE--D 419 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476 FPYT+R+VS++ ES+GSSSMATVC +LALMDAGVPI KPV+GIAMGL+K+ D + +L Sbjct: 420 FPYTVRLVSQVLESNGSSSMATVCSGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAVL 479 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDI GDEDHLG MDFK GT GITA QMD+K G+S I+ AL QAK+ R IL++++ Sbjct: 480 SDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSFEILEKALMQAKQAREFILDKIT 539 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593 + + E R ++ PR+ M IP + I +IG GGK+I+ + E TGA + ID+ G + Sbjct: 540 ETIPEPREEMKPQVPRIVQMEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDEVDGVGKI 599 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++++ + I+AA I++I VPE+ + Y+G V +M +G FV +DGL+HIS++ Sbjct: 600 QVSAPNKTAIDAALGKIKAIVAVPEIGETYEGTVRSIMPYGCFVEIMPGKDGLLHISEID 659 Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLLD D + GK KLS + + Sbjct: 660 WKRLETVEEAGIKEGDKIQVKLLDIDPKTGKYKLSRRCL 698 >gi|281423345|ref|ZP_06254258.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302] gi|281402681|gb|EFB33512.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302] Length = 757 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/698 (40%), Positives = 416/698 (59%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++NEIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PFE + +V ING+YV++P + +DL V+ T+D ++MVE E Sbjct: 133 AASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVAATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++ A+ KP+ E +L+K + V D +E++ + IK + Sbjct: 193 MKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEINDEDLREQIKNE 250 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEH-------SSWNEGEIVSVFEDIQ 299 L + EK+ R D + + + + H E +ED+ Sbjct: 251 LYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHSELSEEDLEEKHAEATRYYEDVM 310 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ R+DGR + +R I +V L HGS++F RG+T ++ TLGT+ D Sbjct: 311 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 370 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ VD + F++HYNF P +TGE RREIGHG LA R + +P+ + Sbjct: 371 EKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 428 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + ILS Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN M + Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 548 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594 +SE R +L PR+E IP + I +IG GGK+I+ + E+TGA + ID+ G V Sbjct: 549 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATITIDETDGKGHVT 608 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I AA I++I VPEV ++Y+G V +M +G FV RDGL+HIS++ Sbjct: 609 VSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGRDGLLHISEIDW 668 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD V VKL++ D + GK KLS +V+ Sbjct: 669 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 706 >gi|281422610|ref|ZP_06253609.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM 18205] gi|281403280|gb|EFB33960.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM 18205] Length = 772 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/698 (40%), Positives = 418/698 (59%), Gaps = 24/698 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++ EIL SR++DR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDEEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PFE + +V ING+YV+NP + ++ +D+ V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFEYYISEVRVARINGEYVVNPTFQQMEEADMDIMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++ A+ KP+ E +LAK K V D +EE+ + IK + Sbjct: 193 MKEVSEQDLIGALKVAAEAIKPMCELQYELAK--EKGTDVKREYDHEINDEELREQIKSE 250 Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299 L + EK+ R D + + + + H+ +E E ++D+ Sbjct: 251 LYKPAYDINHQALEKHARQDAFDKVLADFLEKYDAAHTDLSEEDLEEKHAEATRYYDDVM 310 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ +R+DGR + +R I +V L HGS++F RG+T ++ TLGT+ D Sbjct: 311 RDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMD 370 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 E+ +D + F++HYNF P +TGE RREIGHG LA R + +P F Sbjct: 371 EKLIDGVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--TDF 428 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477 PYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + ILS Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK GR HILN M + Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEEALMQAKAGREHILNCMME 548 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVK 594 +SE R ++ PR+ IP + I VIG GGK+I+ + E TGA + I D G V+ Sbjct: 549 TISEPRAEMKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGQGHVQ 608 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +++ + I+AA I++I VPEV ++Y+G V +M +G FV +DGL+HIS++ Sbjct: 609 VSAPNKDSIDAALAKIKAIVAVPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 668 Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKL++ D + GK KLS +V+ Sbjct: 669 KRLETVEEAGIKEGDKIKVKLMEIDPKTGKYKLSHRVL 706 >gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp. HTCC2170] gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp. HTCC2170] Length = 737 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/692 (40%), Positives = 425/692 (61%), Gaps = 19/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQAD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPEAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++V+NP R ++ +++ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQLEESDIEMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE+ + DAI F H K I A +LA+ K+ + + +++ E++ + I + Sbjct: 194 MDEISEEEMADAIKFAHEAIKVQIAAQLRLAEAFGKKEV--REYETAEVNEDLQKRIHDL 251 Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 C+ K R ++K+++ + F+ E + + + + VR + Sbjct: 252 AYDKCYAIAKQGTSKVERSNAFAEVKEEVKASFTEEEMEEFGHLVGGYYGKAEKEAVREL 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 L + +R+DGR ++ +R I +V L THGSS+F RG+TQA+ VTLGT D +D Sbjct: 312 TLSEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDANKIDMP 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 S +F +HYNF P TGE + SRRE+GHG LA+RA+ ++P+ PYT+R+V Sbjct: 372 SHEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKGMVPEDC--PYTVRVV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SE+ ES+GSSSMATVC ++A+MDAGV +++PV+GIAMGL+ DGD + +LSDI GDEDHL Sbjct: 430 SEVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAVLSDILGDEDHL 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+KI G+S I+V AL+QA+ GRLHIL +++ ++ + Sbjct: 490 GDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQAREGRLHILGKITDTIATPAQNV 549 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601 E P + IP + I +IG GGKVI+ + ++T + I++D G V+I Sbjct: 550 KEHAPTMVTRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEEGIVEILGVGSE 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659 I A I S+ PEV +Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 610 GIAAVEAKIDSLMFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLHVSELAWERTEN 669 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDVV GD VK D R K K+S K + Sbjct: 670 VSDVVNMGDVFDVKYFGLDKRTRKDKVSRKAL 701 >gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola CNS-205] gi|187611286|sp|A8M758|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Salinispora arenicola CNS-205] Length = 786 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 419/704 (59%), Gaps = 33/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ R K+ DFFPLTV+ +ER YA Sbjct: 20 FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEQFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ V+ D VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184 + AAS + LSGLPF GP+ ++ +I+G +V P +E ++ + D+ V+G A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELERATFDMVVAGRALPDGDVA 199 Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + + +V + + G KP I A S+LA++ AK Sbjct: 200 IMMVEAEATEHTVKLVAGGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D D + + ++ + + D+ + I K R + +D +K +++ E Sbjct: 260 PVFLDYSDDAY--QAVADLARSDVAEALKIAGKADREEALDRIKARVIEDLGPRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + + VR+ +L ++VR+DGR +R ++A+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS + +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 D----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ ALQQA Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R IL M + E+ + ++ PRV + IP D+I VIG G+ I I ++TGA+ Sbjct: 557 YEARQTILEVMQAAI-EAPATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ + +++ +AA E + +I + +P+V + G VVK FGAFV Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERVNAIANPTLPKVGDRFLGTVVKTAAFGAFVSLLPG 675 Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HIS++ +RV K D + GD V V++ D D RGKI L Sbjct: 676 RDGLLHISKVGDGKRVEKVEDYLNVGDKVEVEIADIDQRGKIYL 719 >gi|294631766|ref|ZP_06710326.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14] gi|292835099|gb|EFF93448.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14] Length = 740 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/708 (40%), Positives = 423/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ VM + + VV Sbjct: 78 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVCTVMALNPDHLYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + E + + G KP I+ + +K AK + Sbjct: 198 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 257 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ ++ +L + I K R ++D +K E Sbjct: 258 FPIFLDYQD--DVLEALTAAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 314 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + ++VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 315 EKEISAAYRALTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 374 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 375 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 494 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 495 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 554 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 555 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 613 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 614 EITIEDDGTIYIGAADGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 673 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 674 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721 >gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii KT0803] gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii KT0803] Length = 750 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/693 (40%), Positives = 434/693 (62%), Gaps = 19/693 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD F PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD E P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLMSHDDEVMPEAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++++NP R + +++ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 +++SE+ +++AI F H K IEA +LA ++ + D+ + L +++ M Sbjct: 194 MDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAPENEDLVKKVHDMAY 253 Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTVM 307 + + V+ K R +K+++ + FS E G++VS + + VR + Sbjct: 254 DKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELE-EYGDLVSDYYRKAEKAAVRDLT 312 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 L++ +R+DGR ++ VRDI +V L HGSS+F RG+TQA+ VTLGT D +D S Sbjct: 313 LNEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPS 372 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 F +HYNF P TGE + SRRE+GHG LA+RA+ ++P+ + PYT+R+VS Sbjct: 373 HEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIPE--ECPYTVRVVS 430 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDH 485 E+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ DGD + +LSDI GDEDH Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGKYAVLSDILGDEDH 490 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 LG MDFKV GT GITA QMD+K+ G+S I+V AL+QA+ GRLHIL +++ +++ Sbjct: 491 LGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAQPNAD 550 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSL 600 + + P++ IP + I +IG GGKVI+ + ++TG + I++D G ++I + Sbjct: 551 VKAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILGTEQ 610 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVA 658 I+ I SIT PE +Y+ +V+KV+DFGA V + A + L+HIS+L+ ER Sbjct: 611 EGIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEVLLHISELAWERTN 670 Query: 659 KTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +DV+K GD + VK D + K K+S K + Sbjct: 671 DVNDVLKLGDVLDVKYFGLDPKTRKDKVSRKAL 703 >gi|256379820|ref|YP_003103480.1| polynucleotide phosphorylase/polyadenylase [Actinosynnema mirum DSM 43827] gi|255924123|gb|ACU39634.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Actinosynnema mirum DSM 43827] Length = 747 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 419/704 (59%), Gaps = 29/704 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETG +ARQ+ G+V+A ET++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 18 FGTRTIRFETGHLARQAAGSVVAYLDDETMLLSATTASKAPKEHFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV+I VM + VV Sbjct: 78 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVITVMSLNPADLYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L+GLPF GP+ G +V I GQ+V P ++ + D+ V+G A Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLENAVFDMVVAGRVVGDDVA 197 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKMCAKEPIVIDSK- 235 ++MVE EA + D++ + + G KP I+ + + A+ + Sbjct: 198 IMMVEAEATEKVIDLIGEGAQAPTEEVVAAGLEASKPFIKVLCEAQAQLAQVAAKATGEF 257 Query: 236 -DFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 F + + + ++ DL + I K R +ID++K ++ +++ E E Sbjct: 258 PTFPAYQADAFEAVEAAGASDLAQALTIAGKQEREGRIDEVKASVLEKLAAQFEG-REKE 316 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + + F + K+VR +L KVR+DGR +R + A+V ++ RTHGS+LF RG+TQ + Sbjct: 317 VGAAFRSLTKKLVRQRILRDKVRIDGRGLTDIRSLGAEVAIIPRTHGSALFERGETQILG 376 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ +DSLS ++ HYNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 VTTLNMLRMEQQIDSLSPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERALM 436 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP+ +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PV+GIAMGLV D Sbjct: 437 PVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVSGIAMGLVSDE 496 Query: 471 DD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ AL QA+ Sbjct: 497 VDGKTEYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPSEVLASALSQARD 556 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RL IL M++ + ++ F PRV + IP D+I VIG GK+I I EQTGA ++ Sbjct: 557 ARLAILEVMAEAIDVPD-EMSPFAPRVTSVKIPTDKIGEVIGPKGKMINSITEQTGADIS 615 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 I+DDGT+ + ++ EAA +I +I + +P+V + + G VVK FGAFV +D Sbjct: 616 IEDDGTIYVGAADGPSAEAAIGLINAIANPQLPKVGERFLGTVVKTAAFGAFVSLLPGKD 675 Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GL+HIS+L +R+ K DVVK GD + V++ D D RGKI L + Sbjct: 676 GLIHISKLGNGKRIGKVEDVVKVGDKLRVEIADIDQRGKISLVL 719 >gi|261338333|ref|ZP_05966217.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277006|gb|EFA22860.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] Length = 895 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 299/724 (41%), Positives = 439/724 (60%), Gaps = 42/724 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R L+ ETGR+A+Q+DGAV A + T++L+T S K+ DFFPLTV+ +E+ YA Sbjct: 18 FGTRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF +NE QV+ ++ + + + VV Sbjct: 78 AGKIPGSFFRREGRPSTEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPDDAYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AASA+ ++SGLPF GPV G ++ I+GQ+V PR E ++ ++ V+G Sbjct: 138 ALNAASASTLISGLPFGGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVDNGDV 197 Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230 A+ M+E A + + ++ D + G KP I EA +L K+ AKE Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGHMKPDEEVVAGGLEAAKPFIKVICEAQDELKKLAAKE-- 255 Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 + + F + +++ I E DL + I EK R ++I ++K+K+ S E + Sbjct: 256 TREFQLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIHEIKEKVREALSLEFTDM 315 Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 +E E + + F+++Q ++VR +L + R+DGR +R +SA+VG++ R HGS+LF Sbjct: 316 DEAEKEKEVGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVGIVPRVHGSALFQ 375 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +D+LSG +M +Y P +TGE R+G+P RREIGHG Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPTSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +AI PVLP +FPY +R VSE S+GS+SM +VC S+L+L+DAGVP+ PVAGI Sbjct: 436 ALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLDAGVPLKAPVAGI 495 Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++ Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADVLA 555 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 AL+QA R IL +++ + + ++ E PR+ +P D+I +IG GK+I I Sbjct: 556 GALKQAHEARTTILEVINECI-DGPAEMNETAPRIITTVVPVDKIGEIIGPKGKMINQIQ 614 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 E TGA++ I+DDGTV I+S A EAA+++I I + VP+ + Y G+VVK FGAF Sbjct: 615 EDTGAEIAIEDDGTVFISSEGGAAAEAAKKIIDEIANPHVPQAGETYTGKVVKTTSFGAF 674 Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691 V+ DGL+HISQ+ + ER+ DV+KEGD V V + + DDRGKI L++ D Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDEVEVVVQNVDDRGKISLAIPGFED 734 Query: 692 QNTG 695 Q +G Sbjct: 735 QESG 738 >gi|183981938|ref|YP_001850229.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI [Mycobacterium marinum M] gi|226702666|sp|B2HKV3|PNP_MYCMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|183175264|gb|ACC40374.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI [Mycobacterium marinum M] Length = 762 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+V+A E ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGSVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D VV Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ L+GLPF GPV G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201 Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI-----------S 219 T D A++MVE EA ++V + G KP I A+ Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261 Query: 220 KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 AK A+ P+ + D + +S + + L + I K R ++ +++K +++ Sbjct: 262 ATAKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + + E EI + F + K+VR ++ R+DGR +R +SA+V L+ R HGS+ Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGITDIRALSAEVALVPRAHGSA 378 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREI Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PV Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498 Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 AGIAMGLV D + F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK RL IL M++ + ++ ++ + PRV + +P D+I VIG G Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 617 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 KVI I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK Sbjct: 618 KVINSITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + Sbjct: 678 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 736 >gi|297562516|ref|YP_003681490.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846964|gb|ADH68984.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 770 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 283/705 (40%), Positives = 421/705 (59%), Gaps = 35/705 (4%) Query: 11 WAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G A + ETVVL+ + K+ DFFPLTV+ +ER YA Sbjct: 16 FGTRTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKENLDFFPLTVDVEERMYA 75 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ V+ E VV Sbjct: 76 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETVLALHPEHLYDVV 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AAS + ++GLPF GP+ G +V I+GQ+V P E + + D+ V+G Sbjct: 136 AINAASMSTQIAGLPFSGPIGGVRVALIDGQWVGFPTHAELENATFDMVVAGRVLADGDV 195 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNE---------CKPVIEAISKLAKMCAKE------ 228 A++MVE E+ + +V + + G NE KP I+ + K + A + Sbjct: 196 AIMMVEAESTVRTLKLVAEGAV-GPNEQTVAEGLEAAKPFIKVLCKAQQAVADQTSREQG 254 Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 PI +D +D + E + ++E+L + I +K R ++D +K + E Sbjct: 255 EFPIFLDYEDDVYVAVEGA--VREELSKALTIADKQDREAELDRVKASAAEKLA-EDFEG 311 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E EI + F + +++R +L +R+DGR + +R +SA+VG+L R HGS+LF RG+T Sbjct: 312 REKEIGAAFRSLSKQLMRERVLRDGIRIDGRGPKDIRQLSAEVGVLPRVHGSALFERGET 371 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ VD+L+ + +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 372 QIMGVTTLNMLRMEQTVDTLNPDKTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 431 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++LM AGVP+ + V+GIAMGL Sbjct: 432 RALLPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKEMVSGIAMGL 491 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + +GD+F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ GI + +ALQQA+ Sbjct: 492 ISEGDEFVTLTDILGAEDAFGDMDFKVAGTRELITALQLDTKLDGIPAEQLALALQQARG 551 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RL IL+ M + + E ++ PR+ + +P ++I VIG GK+I I + TGA++ Sbjct: 552 ARLAILDVMQEAI-ERPAEMSPNAPRILTVKVPVEKIGEVIGPKGKMINSIQDDTGAEIT 610 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 I+DDGT+ I ++ EAAR+ I I + +PEV Y G VVK FGAFV +D Sbjct: 611 IEDDGTIYIGATDGPSAEAARDTINQIANPTMPEVGDRYLGTVVKTTTFGAFVSLLPGKD 670 Query: 645 GLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 GL+HISQ+ +R+ DV+ G+ + V++ + DDRGK+ L Sbjct: 671 GLLHISQIRKLHGGKRIENLDDVISIGEKIQVEIREIDDRGKLSL 715 >gi|302554539|ref|ZP_07306881.1| polyribonucleotide nucleotidyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472157|gb|EFL35250.1| polyribonucleotide nucleotidyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 738 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/708 (40%), Positives = 419/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRTLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + E + + G KP I+ + SK AK + Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQADLASKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ +K +L + I K R ++D +K E Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS++F RG+TQ Sbjct: 314 EKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I + EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DVV G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVVGVGAKVQVEIAEIDSRGKLSL 720 >gi|145224603|ref|YP_001135281.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium gilvum PYR-GCK] gi|315444934|ref|YP_004077813.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Mycobacterium sp. Spyr1] gi|189037310|sp|A4TCH6|PNP_MYCGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145217089|gb|ABP46493.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium gilvum PYR-GCK] gi|315263237|gb|ADT99978.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Mycobacterium sp. Spyr1] Length = 756 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/715 (39%), Positives = 426/715 (59%), Gaps = 42/715 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ GAV+A ET++L+ + K+ DFFPLT++ +ER YA Sbjct: 22 FGTRTIRFETGRLARQAAGAVVAYLDDETMLLSATTASKQPKEHFDFFPLTIDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ D + V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFISGLRNEIQVVVTVLSLDPKDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------T 181 ++ AASA+ +SG+PF GPV G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 142 AINAASASTQISGIPFNGPVGGVRVALIDGQWVAFPTVEQLEKAVFDMVVAGRKVGDAGN 201 Query: 182 QD-AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI--------SKLAKM 224 +D A++MVE EA ++V +A++ G KP I A+ K Sbjct: 202 EDVAIMMVEAEATDKVIELVAGGAGAPTEAVVAEGLEAAKPFIAALCDAQAALAGAAGKE 261 Query: 225 CAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 A+ P+ D + + ++ + + L + I K R + +++K ++V + +++ Sbjct: 262 TAEYPVFPDYAE--DVYYSVASVATDALSEALTIAGKEARDDRTNEIKAEVVERLAEQYA 319 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E EI + + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG Sbjct: 320 G-REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVIPRAHGSALFERG 378 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG L Sbjct: 379 ETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAM Sbjct: 439 AERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAM 498 Query: 465 GLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 GLV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ GI Sbjct: 499 GLVSDDVEVEGGGVERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQ 558 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL QAK R+ IL M++ + E ++ + PR+ + +P D+I VIG GK+I Sbjct: 559 VLAGALAQAKDARITILEVMAEAIDEPD-EMSPYAPRITTIKVPVDKIGEVIGPKGKMIN 617 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E+TGA ++I+DDGTV + +S+ +AA + I +I + +P+V + + G VVK DF Sbjct: 618 SITEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDF 677 Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAFV RDGLVHIS+L +R+ K DV K GD + V++ D D+RGKI L + Sbjct: 678 GAFVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVL 732 >gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica DSM 20707] gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica DSM 20707] Length = 736 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 292/691 (42%), Positives = 434/691 (62%), Gaps = 17/691 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV T G TV+LA V + K DF PL V Y+E+ AVG+ Sbjct: 14 GRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKEAKPDVDFMPLQVEYKEKYSAVGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE R ++ EIL R++DR++RPLF Y E V I + D P ++ + Sbjct: 74 FPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSSDGVDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V I+G++V+NP ++ ++ +DL V+ T D ++MVE E Sbjct: 134 AASAALAVSDIPFGGPISEVRVARIDGEFVINPTFEQLERADIDLMVAATLDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 ++ E+ +L+AI H +C+ +E + KM +E + +D +L E M + Sbjct: 194 MEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMTKRE-YPAEEQD-EELRERMQRE 251 Query: 248 IKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + + +V+ +K+ R + + ++ + F+ E I + D++ +R + Sbjct: 252 LYDKIYKVATAGTDKHARGDAFEAIVEEFKAQFTEEELEAKGMIIDRYYHDMEKAAMRRM 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD+ R+DGR + +R I + L HGS++F RG+TQ++ VTLGT+ DE+ VD + Sbjct: 312 ILDEGKRLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDV 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + F++HYNF P +TGE SRREIGHG LA RA+ ++P+ +PY +R++ Sbjct: 372 LNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYVIRVM 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484 S+I ES+GSSSMATVC +LAL DAGV + KPV+GIAMGL+ + G ++ ILSDI GDED Sbjct: 430 SDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAILSDILGDED 489 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GRLHIL+++ + E+R Sbjct: 490 HLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILDKIEEAQPEARP 549 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLA 601 + PR+E + I + I VIG GGK+I+GI EQ+GA VNI D+ G V+I+SS+ Sbjct: 550 DMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEQSGATVNIEEVDNYGIVEISSSNKE 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++AA M+R I PEV ++YKG V VM +G FV F +DGL+HIS++ +R A Sbjct: 610 SLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEIDWKRFATIE 669 Query: 662 DV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 D +KEGDT+ VKL++ D + GK LS K + Sbjct: 670 DTGLKEGDTIDVKLIEIDPKTGKFSLSHKAL 700 >gi|72161188|ref|YP_288845.1| polynucleotide phosphorylase/polyadenylase [Thermobifida fusca YX] gi|123629954|sp|Q47RU5|PNP_THEFY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71914920|gb|AAZ54822.1| polyribonucleotide nucleotidyltransferase [Thermobifida fusca YX] Length = 767 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 280/707 (39%), Positives = 422/707 (59%), Gaps = 39/707 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ A ET+VL+ + K+ DFFPLTV+ +ER YA Sbjct: 16 FGTRTIRFETGRLARQATGSATAYLDDETMVLSATTVSKRPKEALDFFPLTVDVEERMYA 75 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ V+ + V+ Sbjct: 76 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIVATVLALHPDHLYDVI 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AAS + L+GLPF GP+ G +V + GQ+V P E + D+ V+G Sbjct: 136 AINAASMSTQLAGLPFSGPIGGVRVALVEGQWVAFPTHSELANATFDMVVAGRVLDNGDV 195 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNE---------CKPVIEAISKLAKMCAKE------ 228 A++MVE E+ + +V + I G NE KP I+ + + + A+ Sbjct: 196 AIMMVEAESTPHTLRLVAEGAI-GPNEQTVAEGLEAAKPFIKVLCRAQQTVAEAAGKPPG 254 Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 PI ID +D ++ +EE I ++L + I +K R ++D +K +V+ +E Sbjct: 255 EYPIFIDYQDDAYAAVEE----AIHDELAAALTIADKQEREAELDRVKA-LVAEKLAEDF 309 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E E+ + F + K+VR ++ VR+DGR + +R ++A+V ++ R HGS+LF RG Sbjct: 310 EGREKELAAAFRALTRKLVRERIVKDGVRIDGRGVKDIRSLTAEVNVIPRVHGSALFERG 369 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + + TL EQ +D+L+ + +M +YNF P +TGE R+GAP RREIGHG L Sbjct: 370 ETQILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGETGRVGAPKRREIGHGAL 429 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++LM AGVP+ VAGIAM Sbjct: 430 AERALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLMAAGVPLKDMVAGIAM 489 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 GL+ + ++ L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ ALQQA Sbjct: 490 GLIYEDGKYVTLTDILGAEDAYGDMDFKVAGTRDLITALQLDTKLDGIPAEVLASALQQA 549 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 + RL IL+ MS+ ++ ++ PR+ + +P D+I VIG GK+I I ++TGA+ Sbjct: 550 RGARLAILDVMSEAINRP-AEISPHAPRILTVKVPIDKIGEVIGPKGKMINSIQDETGAE 608 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + I+DDGT+ I ++ EAAR+ I SI + +PEV + Y G VVK FGAFV Sbjct: 609 ITIEDDGTIYIGATDGPSAEAARDAINSIANPTMPEVGERYLGTVVKTTAFGAFVSLLPG 668 Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +R+ DV+ G+ + V++ D D+RGK+ L Sbjct: 669 KDGLLHISQIRKMHGGQRIENVEDVISIGEKIHVEVRDIDERGKLSL 715 >gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1] Length = 759 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/714 (40%), Positives = 422/714 (59%), Gaps = 47/714 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ E GR+ARQ+ G+V+A ET++L+ + KD DFFPLTV+ +ER YA Sbjct: 22 YGTRTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASKRPKDQFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP + IL R+IDR +RP F +NE QV++ VM D + VV Sbjct: 82 AGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDPYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT- 181 ++ AASA+ L+GLPF GPV G +V I + Q+V P D+ ++ + D+ V+G Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQWVAFPTHDQLERAAFDMVVAGRV 201 Query: 182 ---QDAVLMVELEA------------NQLSEDVVLDAIIFGHNECKPVIEAI----SKLA 222 A++MVE EA N +EDVV D G KP I ++ +LA Sbjct: 202 VGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVAD----GLEAAKPFIRSLCVAQQQLA 257 Query: 223 KMCAKEPIVIDSKDFSKLE----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 + AK D F + E +++ ++++L + I K R + D++K ++ Sbjct: 258 DVAAKP--TADYPVFPAYQPDALEAVTEAVEQELAQALTIAGKQERETRTDEIKASVLEK 315 Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E + E E+ + F + K++R +L +VR+DGR +R +SA+V ++ R HGS Sbjct: 316 LG-ERFTGRESELGNAFRALNKKLIRRRILTDQVRIDGRGLTDIRPLSAEVEVIPRAHGS 374 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + V TL EQ +DSL ++ HYNF P +TGE R+G+P RRE Sbjct: 375 ALFERGETQILGVTTLNMLRMEQTIDSLGPETSKRYLHHYNFPPFSTGETGRVGSPKRRE 434 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ P Sbjct: 435 IGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAP 494 Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 495 VAGIAMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 554 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL QAK RL IL + + + + ++ ++ PRV + +P D+I VIG GK+I Sbjct: 555 EVLAAALSQAKDARLTILEVIGEAI-DGPDEMSKYAPRVTAVKVPVDKIGEVIGPKGKMI 613 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA ++I+DDGT+ + ++ E A MI +I + +P+V + + G VVK Sbjct: 614 NSITEKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKVGERFLGTVVKAAA 673 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV +DGL+HIS+L +R+ K DV K GD + V++ D D+RGKI L Sbjct: 674 FGAFVSLVPGKDGLIHISKLGNGKRIGKVEDVCKVGDKIRVEVTDIDNRGKISL 727 >gi|307564828|ref|ZP_07627356.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS 21A-A] gi|307346550|gb|EFN91859.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS 21A-A] Length = 751 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/711 (39%), Positives = 426/711 (59%), Gaps = 26/711 (3%) Query: 2 FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 +V T I+ A GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL Sbjct: 1 MNVITKTIQLADGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+E+ A G+ PGG+ +RE + ++EIL SR++DR +RPLF Y E V I ++ Sbjct: 61 VDYREQYSAAGRFPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVYVQIMLLSA 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D P ++ AASAAL S +P E P+ +V I G+Y++NP D+ + +D+ V Sbjct: 121 DGVDQPDALAGFAASAALAASTIPIEYPISEVRVARIKGEYIINPTFDQMKEADMDIMVG 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T+D ++MVE E +++SE ++ A+ H KP+ E +L+K C + + + Sbjct: 181 ATKDNIMMVEGEMDEVSEQELIGALKAAHEAIKPMCELQEELSKECGTDVKREYCDEVN- 239 Query: 240 LEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 ++E+ + ++++ +C+ +K+ R + +K + + + H E+ Sbjct: 240 -DDELREQVRKETYNACYAQAQSGDDDKHHREEVYSQIKADFIEKYDAAHEDLTADELAE 298 Query: 294 VFE-------DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E D++ +R +LD RMDGR ++ +R I +V L HGS++F RG+T Sbjct: 299 KHEMIERYYADVERDTMRRSVLDTGKRMDGRATDEIRHIWCEVDALPMPHGSAIFQRGET 358 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 ++ TLGT+ DE+ VD++ F++HYNF P +TGE RREIGHG LA Sbjct: 359 MSLSTCTLGTKMDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ +P FPYT+R+VS+I ES+GSSSMATVC +LAL DAGVP+ KPV+GIAMGL Sbjct: 419 RALKNQIP--TDFPYTVRLVSQILESNGSSSMATVCAGTLALFDAGVPMKKPVSGIAMGL 476 Query: 467 VKDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 +K+ D + ILSDI GDEDHLG MDFK GT GITA QMD+K G+S I+ AL QA Sbjct: 477 IKNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSYEILEKALMQA 536 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K GR +IL +M + + R ++ PR+E + IP + I +IG GGK+I+ + E TGA Sbjct: 537 KAGREYILGKMMETMPAPRSEMKPQVPRIEQLFIPKEFIGAIIGPGGKIIQQMQEDTGAT 596 Query: 585 VN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 + ID+ G + I++ + I+AA I+SI VPE+ ++Y+G V +M +G FV Sbjct: 597 ITIEEIDNQGKISISAPNKESIDAALGKIKSIVAVPEIGEVYEGIVRSIMPYGCFVEIMP 656 Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +DGL+HIS++ +R+ + +KEGD + VKLL+ D + GK KLS +V+ Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKIKVKLLEIDQKTGKYKLSHRVL 707 >gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola 23] gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola 23] Length = 792 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 282/700 (40%), Positives = 428/700 (61%), Gaps = 28/700 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTITIETGKVAKQTDGSVVLRMNNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE + ++NEIL SR++DR +RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKASDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSADGIDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL S +PFE P+ +V +NG+YV++P ++ +D+ V + + ++MVE E Sbjct: 133 AASAALACSDIPFECPISEVRVARVNGEYVIDPTFEQMKNADMDIMVGASAENIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 ++SE ++ A+ KP+ E ++L+K K+ V D +EE+ + + ++ Sbjct: 193 MKEVSEQDMIGALKAAMAAIKPMCELQAELSKELGKD--VKREYDHEVNDEELRERMSKE 250 Query: 252 LRVSCFIPEKYVRCKQ--IDDLKKKMVSY---FSSEHSSWNEGEIVS-------VFEDIQ 299 L + K KQ D +K + + +++EH+ E E+ + D++ Sbjct: 251 LYQPAYDVTKQALPKQDRADAFEKILTDFKEKYAAEHADLTEDELEEKYAMMERYYHDVE 310 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +R +LD+ +R+DGR ++ +R I +V L HGSS+F RG+TQ++ TLGT+ D Sbjct: 311 RDAMRRCILDEGIRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQSLSTCTLGTKLD 370 Query: 360 EQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 E+ VD + G QR F++HYNF P TGE RREIGHG LA R + +P+ Sbjct: 371 EKMVDDVLEHGYQR--FLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE-- 426 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFII 475 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPV+GIAMGL+K+ D + + Sbjct: 427 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAV 486 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI GDEDHLG MDFK GT G+TA QMD+K G+S +I+ AL QAK GR HIL + Sbjct: 487 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFDILEKALMQAKAGREHILKCL 546 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGT 592 + ++E R ++ PR+ M IP + I VIG GGK+I+ + E TGA + ID+ G Sbjct: 547 TDTIAEPRAEMKPQVPRIVQMEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDGVGK 606 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V++++ + I+AA I++I +PEV ++Y G V +M +G FV +DGL+HIS++ Sbjct: 607 VQVSAPNKESIDAAIGKIKAIVAIPEVGEVYDGVVRSIMPYGCFVEIMPGKDGLLHISEI 666 Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +R+ + +KEGD + VKLL+ D + GK KLS +V+ Sbjct: 667 DWKRLETVEEAGIKEGDHIQVKLLEIDPKTGKYKLSHRVL 706 >gi|302206397|gb|ADL10739.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium pseudotuberculosis C231] gi|302330953|gb|ADL21147.1| Polyribonucleotide nucleotidyltransferase [Corynebacterium pseudotuberculosis 1002] Length = 767 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 434/723 (60%), Gaps = 48/723 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++A+Q+DG+V TY + T++LAT + ++G DFFPLTV+ +ER Sbjct: 42 DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ D E Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180 VV++ ASAA LSGLP GPV G ++ I GQ++ P ++ + +L +L V+G Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220 Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220 +D A++MVE A + + + D + G KP IE + + Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280 Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270 LA+ AK+ P+ D + +E+++S+ +++ L + + ++ Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 ++ ++++ F SE + I + + + K+VR ++L + R+DGR +RD+ +V Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L+ R HGS+LF RG+TQ + V TL + EQ +DSLS T ++ HYNF P +TGE R Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +G+P RREIGHG LA RA+ PV+P +FPYT+R VSE S+GS+SM +VC S+L+L + Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520 Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 K+ GI ++ AL QA R IL M++V+ ES ++ ++ PR+ + +P +I V Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRITTVTVPVSKIGEV 639 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624 IG GK I I E+TGA ++I++DGTV ++++S EAA E I +I + +P+V + + Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERFL 699 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G +VK FGAFV RDGL+HIS+L +R+ K DVV GD V V++LD D+RGKI Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759 Query: 684 KLS 686 L+ Sbjct: 760 SLA 762 >gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] Length = 598 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 257/597 (43%), Positives = 385/597 (64%), Gaps = 6/597 (1%) Query: 102 LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161 +F K YK++ Q++ V+ D + SP + +M+ +S AL +S +PF GP+ G V Y++G+Y Sbjct: 1 MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMALSVSDIPFLGPIAGVNVGYVDGKY 60 Query: 162 VLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220 V+NP + E + S LDL V+G +DAV MVE A++++E +L+AI FGH+E K ++ Sbjct: 61 VINPTVAEKEVSRLDLEVAGHKDAVNMVEAGASEITESEMLEAIFFGHDEIKRLVAFQQG 120 Query: 221 LAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 + K+ + +D + +E+ S + L+ + +K R +D LK+ +V+ Sbjct: 121 IIDYIQPEKQAFIPVERDEALVEKVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAE 180 Query: 279 FSSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 F E NE E+ ++ D+ + VR ++ D+K+R DGR + +R + ++VGLL R Sbjct: 181 FIDEEDPDNEALIKEVYAILNDLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRA 240 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS LF RG TQA+ V+TLG D Q +D L + FM HYNF + GE + AP Sbjct: 241 HGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPG 300 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG L RA+ ++P T+ FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI Sbjct: 301 RREIGHGALGERALKYIIPDTSDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPI 360 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 PVAGIAMGLV D + IL+DI G ED LG MDFKVAGT GITA+QMD+KI G++ Sbjct: 361 KAPVAGIAMGLVTREDSYTILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTRE 420 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL+QA++GRL I++ M + + + R +L + P+V M I P++IR+VIG GGK I Sbjct: 421 VIEEALEQARQGRLAIMDHMLQTIDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKIN 480 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635 I+++TG K++I+ DG + I + I ARE+I IT EV ++Y +V ++ +GA Sbjct: 481 EIIDETGVKLDIEQDGQIFIGAVDQEMINRAREIIEEITREAEVGQVYNAKVKRIEKYGA 540 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 FV +D L+HISQ+STER+ K DV+K GD++ VK+ + D +G++ S K +++ Sbjct: 541 FVELFPGKDALLHISQISTERINKVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINE 597 >gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium johnsoniae UW101] gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium johnsoniae UW101] Length = 714 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 278/681 (40%), Positives = 416/681 (61%), Gaps = 20/681 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DG+V+ G ++LAT V R+ G DF PLTV+Y+E+ A G+ Sbjct: 15 GRSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLPLTVDYREKFAAAGR 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP+++E+L R++DR +RPLF Y ETQV+I +M HD P ++ + Sbjct: 75 FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLMSHDDNVMPDALAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF + +V I+G+ V+NP R + ++ +D+ + + D+V MVE E Sbjct: 135 AASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTELEKSDIDMMIGASLDSVAMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250 ++SE +++AI F H K I A KL AK+ ++E + + + + Sbjct: 195 MKEISEAEMIEAIKFAHEAIKVQIHAQQKLRAKLSSQEYRTYEGEVEDEAVYAKVKAAAY 254 Query: 251 DLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302 D C+ K R ++ +K++ + F+ E + N G + F + Sbjct: 255 D---KCYAIAQEASGKAERGEKFATVKEEAKALFTEEEYAENADLAGLVGKYFYKTNKEA 311 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR V+L+K +R+DGR + +R I + L HGSSLF RG+TQA+ VTLGT + Sbjct: 312 VRNVILEKGIRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALATVTLGTSREANQ 371 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +DS S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A PYT Sbjct: 372 IDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKNMIP--ADCPYT 429 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSE+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ DG+ F +LSDI GD Sbjct: 430 IRVVSEVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGEKFAVLSDILGD 489 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+KI G+ +IM AL QA+ GRLHIL ++++ ++ Sbjct: 490 EDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALAQARDGRLHILGKLTETIAAP 549 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSS 599 R + P++ IP + I +IG GGKVI+ + + TG + +D+ G V+I + Sbjct: 550 RADVKAHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILGTD 609 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657 I+ I ++T P+V + Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 610 PEGIKTVLAKIDALTFKPQVGEAYEVKVIKMLDFGAVVEYTAAPGNEVLLHVSELAWERT 669 Query: 658 AKTSDVVKEGDTVWVKLLDFD 678 +DVVK GD VK L D Sbjct: 670 ENVADVVKMGDVFEVKYLGVD 690 >gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] Length = 741 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/696 (40%), Positives = 427/696 (61%), Gaps = 25/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD E P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDEVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + +V +NG++++NP R + +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQLAESDIDMVIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------SKLEEEMS 245 +++SE+ + +AI H K EA +LA+ K+P ++++ ++LE+++ Sbjct: 194 MDEISEEEMTEAIKAAHEAIKVQCEAQIRLAEAFGKKP----TREYEPEVEDAELEKKVY 249 Query: 246 QMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + + V+ K+ R D +K+++ FS E I F + VR Sbjct: 250 DLTYDKVYEVAKAGSSKHERSTAFDAIKEEVKGTFSEEDLEAFGDLISKYFYKAEKAAVR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L++ +R+DGR + +R I + L HGSS+F RG+TQA+ VTLGT + +D Sbjct: 310 DLTLNEGLRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLGTSREANQID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A PYT+R Sbjct: 370 MPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP--ADCPYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482 +VSEI ES+GSSSMATVC ++A+MDAGV + KPV+GIAMGL+ D + + +LSDI GD Sbjct: 428 VVSEILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAMGLITDVETGKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+K+ G+S I+V AL QA+ GRLHILN ++ +SE Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVKALHQARDGRLHILNHLTDTISEP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 R + ++ P++ I + I +IG GGKVI+ + ++TG + I++D G V+I Sbjct: 548 REDVKDYAPKMVTTRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 + I A I SIT P+V + YK +V+K++DFGA V + A + L+H+S+L+ E Sbjct: 608 TGTEGINAVLAKIDSITFKPKVGESYKVKVIKMLDFGAVVEYLAAPGNEVLLHVSELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 R SDVV GD VK D R K K+S K + Sbjct: 668 RTENVSDVVNMGDEFEVKYFGIDSRTRKEKVSRKAL 703 >gi|308276640|gb|ADO26539.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium pseudotuberculosis I19] Length = 767 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 433/723 (59%), Gaps = 48/723 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++A+Q+DG+V TY + T++LAT + ++G DFFPLTV+ +ER Sbjct: 42 DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ D E Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180 VV++ ASAA LSGLP GPV G ++ I GQ++ P ++ + +L +L V+G Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220 Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220 +D A++MVE A + + + D + G KP IE + + Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280 Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270 LA+ AK+ P+ D + +E+++S+ +++ L + + ++ Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 ++ ++++ F SE + I + + + K+VR ++L + R+DGR +RD+ +V Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L+ R HGS+LF RG+TQ + V TL + EQ +DSLS T ++ HYNF P +TGE R Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +G+P RREIGHG LA RA+ PV+P +FPYT+R VSE S+GS+SM +VC S+L+L + Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520 Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 K+ GI ++ AL QA R IL M++V+ ES ++ ++ PR + +P +I V Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRTTTVTVPVSKIGEV 639 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624 IG GK I I E+TGA ++I++DGTV ++++S EAA E I +I + +P+V + + Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERFL 699 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G +VK FGAFV RDGL+HIS+L +R+ K DVV GD V V++LD D+RGKI Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759 Query: 684 KLS 686 L+ Sbjct: 760 SLA 762 >gi|257055504|ref|YP_003133336.1| polynucleotide phosphorylase/polyadenylase [Saccharomonospora viridis DSM 43017] gi|256585376|gb|ACU96509.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Saccharomonospora viridis DSM 43017] Length = 823 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 285/717 (39%), Positives = 431/717 (60%), Gaps = 43/717 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A ET+VL+ + K+ DFFPLTV+ +ER YA Sbjct: 24 FGQRTVRFETGRLARQAAGSVVAYLDDETMVLSATTASKQPKEQFDFFPLTVDVEERMYA 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F++ +NE Q+++ V + V+ Sbjct: 84 AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFAEGLRNEIQIVVTVQSLHPDDPYDVL 143 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQ 182 ++ AASA+ ++GLPF GP+ G ++ I+G++V P + ++ + ++ V+G + Sbjct: 144 AINAASASTQIAGLPFSGPIGGVRLGLIDGEWVAFPTWSQLERATFNMVVAGRIVGDRPE 203 Query: 183 D-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKEP 229 D A++MVE E + + D++ + + G + KP I EA +LA + AK Sbjct: 204 DVAIMMVEAEGTENTLDLIANGATAPTEKTVAEGLDAAKPFIRVLCEAQQRLADVAAKP- 262 Query: 230 IVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSE 282 V + F E++ ++ + + L + I K R ID++K + V E Sbjct: 263 -VGEFPLFPDYEQDAYDAVAAIATDGLAKALTIAGKQERENAIDEVKNAVLERVGIGEGE 321 Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 E EI + F + K++R +L KVR+DGR +R ++A+V ++ R HGS+LF Sbjct: 322 AFEGREKEIGAAFRALTKKLIRQRILRDKVRIDGRGVTDIRQLAAEVSVVPRAHGSALFE 381 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL EQ +D+LS F+ HYNF P +TGE R+G P RREIGHG Sbjct: 382 RGETQILGVTTLNMLRMEQQLDTLSPETTKRFLHHYNFPPYSTGETGRVGTPKRREIGHG 441 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ PV+P+ +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGI Sbjct: 442 MLAERALVPVVPKREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 501 Query: 463 AMGLVKD------GDD---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513 AMGLV D G+ ++ L+DI G ED G MDFKVAGT ITA+Q+D K+ GI Sbjct: 502 AMGLVSDEVENENGETEVRYVALTDILGAEDAFGDMDFKVAGTREIITALQLDTKLDGIP 561 Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573 +++ AL+QA+ RL IL+ M++ + + ++ + PRV + +P D+I VIG GK+ Sbjct: 562 SDVLAAALEQARDARLTILDVMAEAI-DGPDEMSPYAPRVTSLKVPVDKIGEVIGPKGKM 620 Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631 I I E+TGA ++I+DDGT+ + ++ +AA E I +I + +P+V + Y G VVK Sbjct: 621 INSITEETGADISIEDDGTIYVGAADGPSADAAIEKINAIANPQLPKVGERYLGTVVKTA 680 Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 FGAFV RDGLVHIS+L +RVAK DVV GD + V++ D D RGKI L + Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVHVGDKLQVEIADIDSRGKISLVL 737 >gi|326382957|ref|ZP_08204647.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis NRRL B-59395] gi|326198547|gb|EGD55731.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis NRRL B-59395] Length = 750 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/714 (40%), Positives = 420/714 (58%), Gaps = 43/714 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R + ETGR+A Q+ G+V+A E T++L+T ++ K+ DFFPLTV+ +ER YA Sbjct: 24 FGTRTITFETGRLALQAAGSVVAYLDEGTMILSTTTASKNPKEHFDFFPLTVDVEERMYA 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q++ V+ D + VV Sbjct: 84 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVETVLSLDPKDLYDVV 143 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSGT- 181 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ +G+ D+ V+G Sbjct: 144 AINAASASTQIAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRL 203 Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCA 226 A++MVE EA ++ D + G KP I EA +LA + Sbjct: 204 VDGDVAIMMVEAEATDNVLALIADGATAPSEAVVAEGLEAAKPFIATLCEAQKQLAAAAS 263 Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 KE P+ KD + E +++ L + I +K R D LK ++ E Sbjct: 264 KETRDFPLFPPYKDDAY--EAVAEFATARLGEAMSIADKQERDGATDALKGDVLEALG-E 320 Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 EGE+ + + + K+VR +L R+DGR +R +SA+VG++ R HGS+LF Sbjct: 321 RFEGREGELGAAYRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEVGIIPRAHGSALFE 380 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG Sbjct: 381 RGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 440 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGI Sbjct: 441 ALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTISLLNAGVPLKAPVAGI 500 Query: 463 AMGLVKD--------GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 AMGLV D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 501 AMGLVSDEVTIDGKTETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 560 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL QAK+ RL IL+ +++ + E ++ + PR+ + IP D+I +IG GK I Sbjct: 561 KVLAGALSQAKQARLTILDVLAEAIDEPD-EMSPYAPRITTIKIPMDKIGELIGPKGKTI 619 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 GI E+TGA ++I+DDGTV I ++ +AA + + +I + +P+V + + G VVK Sbjct: 620 NGITEETGANISIEDDGTVFIGAADGPSAQAAIDKVNAIANPQLPKVGERFLGTVVKTAA 679 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L +R+ K DVVK GD + V++ D D+RGKI L Sbjct: 680 FGAFVSLLPGRDGLVHISKLGNGKRIGKVEDVVKVGDKLQVEIADIDERGKISL 733 >gi|317508352|ref|ZP_07966026.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Segniliparus rugosus ATCC BAA-974] gi|316253350|gb|EFV12746.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Segniliparus rugosus ATCC BAA-974] Length = 731 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/718 (39%), Positives = 420/718 (58%), Gaps = 39/718 (5%) Query: 3 DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56 +VH V E + R +K +TG++A+Q+ G+V A+ E T VL+ Y K DF Sbjct: 7 EVHEVTCELDNGAYGVRTVKFQTGKLAQQAAGSVFASLDEDTTVLSATTYSSQPKSQFDF 66 Query: 57 FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116 FPLTV+ +ER YA G+IPG + RRE RP+ IL R+IDR +RP F +NE Q+++ Sbjct: 67 FPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVDGLRNEVQIVVT 126 Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LD 175 V+ + + V+++ AASA+ LSGLPF GP+ G +V I Q+V P +++ +G+ D Sbjct: 127 VLSLNPNALYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLEGAVFD 186 Query: 176 LFVSGT-----QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAI 218 + V+G AV+MVE EA + +E+VV + + K + A Sbjct: 187 MVVAGRVLDDGDVAVMMVEAEATDHAIKLIEGGATKPTEEVVAEGLEAAKPFLKQLAIAQ 246 Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV----SCFIPEKYVRCKQIDDLKKK 274 LA + KE + + F ++++ + + + R + +P K R +I+++K Sbjct: 247 EALAAVAGKE--AFELQQFHAYQQDVYEAVDFNARAVLSEALSLPGKLEREARIEEIKSA 304 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 + EGEI + F + K+VR +L R+DGR +R +S ++ + R Sbjct: 305 AKEQLEPQFEG-REGEISAAFRSLNKKLVRERILSDGFRIDGRGLREIRPLSVEISPIPR 363 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGS+LF RG+TQ + V TL + Q VD+L + +M HYNF P +TGE R+G+P Sbjct: 364 VHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVTKRHYMHHYNFPPYSTGETGRVGSP 423 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 RREIGHG LA RA+ PVLP A FPY +R VSE S+GS+SM +VC S+++L+ AGVP Sbjct: 424 KRREIGHGALAERALVPVLPDQADFPYAIRQVSEALGSNGSTSMGSVCASTMSLLAAGVP 483 Query: 455 ISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 I PVAGIAMGLV +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ Sbjct: 484 IKAPVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLD 543 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL QAK R IL+ ++ + E +L PR+ + IP D+I VIG Sbjct: 544 GIPSQVLAGALAQAKEARDTILDVIADAIDEPG-ELSPHAPRITTIKIPVDKIGEVIGPK 602 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GK+I I E+TGA ++I+DDGTV +A++S +AA + I +I + +P+V + Y G VV Sbjct: 603 GKMINSITEETGANISIEDDGTVYVAATSGDSAQAAIDKINAIANPQLPKVGERYLGTVV 662 Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 K FGAFV +DGLVHIS+L +R+A DVV+ G + V++ D DDRGKI L Sbjct: 663 KTTAFGAFVSLTPGKDGLVHISKLGNGKRIASVEDVVQIGSKLRVEIADIDDRGKISL 720 >gi|329936628|ref|ZP_08286335.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces griseoaurantiacus M045] gi|329303858|gb|EGG47741.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces griseoaurantiacus M045] Length = 740 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/708 (39%), Positives = 419/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F+K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGTRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + E + + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATEKTIQLIKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ ++ +L + I K R ++D +K E Sbjct: 257 FPIFLDYQD--DVLEALTGAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPFSVGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 ALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLNGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAIDRPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720 >gi|117928715|ref|YP_873266.1| polynucleotide phosphorylase/polyadenylase [Acidothermus cellulolyticus 11B] gi|187470956|sp|A0LV20|PNP_ACIC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117649178|gb|ABK53280.1| Polyribonucleotide nucleotidyltransferase [Acidothermus cellulolyticus 11B] Length = 782 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 291/720 (40%), Positives = 432/720 (60%), Gaps = 41/720 (5%) Query: 3 DVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF 57 DVHT E + R ++ ETGR+ARQ+ G+ +A G+T+VL+ + ++ DFF Sbjct: 5 DVHTAEAVIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFF 64 Query: 58 PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117 PLTV+ +ER YA G+IPG + RRE RP+E IL R+IDR +RP F K +NE QV++ V Sbjct: 65 PLTVDVEERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTV 124 Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176 + D E VV++ AAS + +L+GLPF GP+ G ++ +I+G +V P E ++ + D+ Sbjct: 125 LAVDPEHLYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDM 184 Query: 177 FVSGT-----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----S 219 V+G A++MVE EA + + ++ + + G KP I + S Sbjct: 185 VVAGRVLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQS 244 Query: 220 KLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 +LA AK P+ D +D + + ++ +++D+ + I K R +D++ Sbjct: 245 ELAARAAKPVTEFPLFRDYED--DVYDAVAATVRDDVARALTIAGKQEREAALDEVANTA 302 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + E + E EI++ + K+VR ++ +KVR+DGR +R ++A+VG++ R Sbjct: 303 LGRLG-ERFAGREKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRV 361 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL EQ +D++S + +M HYNF P +TGEV R+G+P Sbjct: 362 HGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPK 421 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 422 RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPL 481 Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGL+ D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 482 RAPVAGIAMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDG 541 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I +++ AL QA+ RL IL+ M+K +SE + + PR+ + IP DQI VIG G Sbjct: 542 IPASVLAAALPQAREARLTILDVMAKAISEP-APMSPYAPRIITIKIPVDQIGAVIGPKG 600 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I + TGA++ I+DDGT+ I ++ EAAR I +I + +PEV + Y G VVK Sbjct: 601 KIINQIQDDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVK 660 Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FG FV +DGL+HIS+L RV DV+K GD + V++ D D RGK+ L Sbjct: 661 ATPFGVFVSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720 >gi|269127530|ref|YP_003300900.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Thermomonospora curvata DSM 43183] gi|268312488|gb|ACY98862.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Thermomonospora curvata DSM 43183] Length = 775 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 290/716 (40%), Positives = 432/716 (60%), Gaps = 38/716 (5%) Query: 4 VHTVEI-----EWAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQDFF 57 VHT E + R L+ ETGR+ARQ+ G AV+ ET+VL+ + K+ DFF Sbjct: 9 VHTAEAVIDNGSFGTRTLRFETGRLARQAAGSAVVYLDEETMVLSATTVSKKPKETLDFF 68 Query: 58 PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117 PLTV+ +ER YA G+IPG + RRE RP+E+ IL R+IDR +RP F+K +NE Q++ V Sbjct: 69 PLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQIVETV 128 Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176 + E VV++ AAS + +LSG+PF GP+ G +V I+GQ+V P E ++ + D+ Sbjct: 129 LALHPEHLYDVVAINAASMSTLLSGVPFSGPIGGVRVALIDGQWVAFPTHSELERATFDM 188 Query: 177 FVSG-TQD----AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAIS 219 V+G T D A++MVE E+ + + +V + + G KP I +A Sbjct: 189 VVAGRTLDNGDVAIMMVEAESTRDTLKLVAEGAPAPTEERVAEGLEASKPFIKILCDAQR 248 Query: 220 KLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 +LA + AKE P+ +D D + E +S + EDL + I K R ++++L+ Sbjct: 249 ELAAVAAKETIEFPLFLDYTD--DVLEAVSATVSEDLAQALTIVGKQEREAKLEELRAAT 306 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + + ++ E+ + F + K++R ++ VR+DGR + +R +SA+V ++ R Sbjct: 307 IEKLLPDFEGRDK-ELAAAFRAVTKKLIRERIVRDGVRIDGRGVKDLRQLSAEVHVVPRV 365 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL EQ +D+LS + +M HYNF P +TGE R+G+P Sbjct: 366 HGSALFERGETQILGVTTLNMLRMEQTIDTLSPERTKRYMHHYNFPPYSTGETGRVGSPK 425 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+DAGVP+ Sbjct: 426 RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPL 485 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 VAGIAMGL+ + +++ L+DI G ED G MDFKVAGT ITA+Q+D K+ GI Sbjct: 486 KDMVAGIAMGLIYENGEYVTLTDILGAEDAFGDMDFKVAGTRDLITALQLDTKLDGIPAE 545 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL+QAK RL IL+ M++ +SE +L + PR+ + +P D+I VIG GK+I Sbjct: 546 VLAAALKQAKAARLAILDVMAEAISEP-AELSPYAPRIITIKVPVDKIGEVIGPKGKMIN 604 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I + TGA + I+DDGT+ + + EAAR+ I +I + +PEV + Y G VVKV F Sbjct: 605 SIQDDTGADITIEDDGTIYVGALDGPSAEAARQAINAIANPHMPEVGERYLGTVVKVTTF 664 Query: 634 GAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 GAFV +DGL+H+SQ+ R+ D +K G+ V V++ + D RGK+ L Sbjct: 665 GAFVSLLPGKDGLLHVSQIRKLHGGARIDNVEDYLKVGEKVQVEVTEIDPRGKLSL 720 >gi|331698425|ref|YP_004334664.1| polyribonucleotide nucleotidyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326953114|gb|AEA26811.1| Polyribonucleotide nucleotidyltransferase [Pseudonocardia dioxanivorans CB1190] Length = 750 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 283/702 (40%), Positives = 419/702 (59%), Gaps = 29/702 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 21 FGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPKEQFDFFPLTVDVEERMYA 80 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 +GKIPG + RRE RP + IL R+IDR +RP F +NE Q+++ V+ D + Sbjct: 81 IGKIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTVLSLDPRDPYDAL 140 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT----QDA 184 ++ AASA+ L+GLPF GP+ G +V I+GQ+V P+ ++ Q + D+ V+G A Sbjct: 141 AINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPQYEDLQRAVFDMVVAGRIVGDDVA 200 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAKEPIVI 232 ++MVE EA + ++V + G KP I ++ +LA + AK Sbjct: 201 IMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIRSLCVAQQQLADVAAKPTGSF 260 Query: 233 DSKDFSKLE--EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 + + + E + +DL + I K R +ID++K +++ E E E Sbjct: 261 PTYPAYQPDAFEAVEAAASDDLAAALTIAGKQEREARIDEVKAGVLASLG-EKFEGREKE 319 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + + F + K+VR +L +VR+DGR +R +SA+V ++ R HGS+LF RG+TQ + Sbjct: 320 LGAAFRSLNKKLVRRRILTDQVRIDGRGLTDIRPLSAEVEVVPRAHGSALFERGETQIMG 379 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 V TL EQ +DSL ++ HYNF P +TGE R+G+P RREIGHG LA RA+ Sbjct: 380 VTTLNMLRMEQQIDSLGPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERALL 439 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGLV D Sbjct: 440 PVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE 499 Query: 471 DD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ AL QAK Sbjct: 500 VDGKATYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSEVLAAALNQAKD 559 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 RL IL + + + + ++ + PRV + +P D+I VIG GK+I I EQTGA ++ Sbjct: 560 ARLTILEVLGEAI-DGPDEMSTYAPRVTAIKVPVDKIGEVIGPKGKMINSITEQTGADIS 618 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 I+DDGT+ + ++ EAA MI +I + +P++ + + G VVK FGAFV +D Sbjct: 619 IEDDGTIYVGAADGPSAEAAIGMINAIANPQLPKIGERFLGTVVKTAAFGAFVSLVPGKD 678 Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 GLVHIS+L +R+ K DVVK GD + V++ D D+RGKI L Sbjct: 679 GLVHISKLGNGKRIGKVEDVVKVGDKLRVEVTDIDNRGKISL 720 >gi|239928583|ref|ZP_04685536.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis ATCC 14672] gi|291436909|ref|ZP_06576299.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis ATCC 14672] gi|291339804|gb|EFE66760.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis ATCC 14672] Length = 739 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 284/715 (39%), Positives = 420/715 (58%), Gaps = 37/715 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRTLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227 A++MVE EA + + E + + G KP I+ + + K A+ Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTAE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ +K +L + I K R ++D +K E Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELAQALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 ALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAIDRPD-EMSPHAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L + D+ Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLVPVIEDE 727 >gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis 60-3] gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis 60-3] Length = 736 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 289/691 (41%), Positives = 434/691 (62%), Gaps = 17/691 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGAV T G TV+LA V + K DF PL V Y+E+ A+G+ Sbjct: 14 GRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPLQVEYKEKFSAIGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ RRE R ++ EIL R++DR++RPLF Y E V I + D P ++ + Sbjct: 74 FPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSSDGVDMPDALAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAAL +S +PF GP+ +V ++G +V+NP ++ ++ +DL V+ T D ++MVE E Sbjct: 134 AASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQLERADIDLMVAATLDNIMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247 ++ E+ +L+AI H +C+ +E + KM +E + +D +L E M + Sbjct: 194 MEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMVKRE-YPAEEQD-EELRERMQRE 251 Query: 248 IKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + + + +V+ +K+ R + ++ + F++E I + D++ +R + Sbjct: 252 LYDKIYKVATAGTDKHARGDAFAAIVEEFKAQFTAEELEEKGMIIDRYYHDMEKAAMRRM 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD+ R+DGR ++ +R I + L HGS++F RG+TQ++ VTLGT+ DE+ VD + Sbjct: 312 ILDEGKRLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDV 371 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + F++HYNF P +TGE SRREIGHG LA RA+ ++P+ +PY +R++ Sbjct: 372 LNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYVIRVM 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484 S+I ES+GSSSMATVC +LAL DAGV + KPV+GIAMGL+ + G ++ ILSDI GDED Sbjct: 430 SDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAILSDILGDED 489 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GRLHILN++ + E+R Sbjct: 490 HLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILNKIEEAQPEARP 549 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLA 601 + PR+E + I + I VIG GGK+I+GI E++GA VNI D+ G V+I+SS+ Sbjct: 550 DMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDNYGIVEISSSNKE 609 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++AA M+R I PEV ++YKG V VM +G FV F +DGL+HIS++ +R A Sbjct: 610 SLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEIDWKRFATIE 669 Query: 662 DV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + +KEGDT+ VKL++ D + GK LS K + Sbjct: 670 ETGLKEGDTIDVKLIEIDPKTGKFSLSHKAL 700 >gi|240171316|ref|ZP_04749975.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium kansasii ATCC 12478] Length = 756 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/723 (39%), Positives = 421/723 (58%), Gaps = 50/723 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A E ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLALQAAGAVVAYLDEENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q+++ ++ D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPNDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQDA 184 ++ AASA+ L GLPF GP+ +V I+G +V P +++ + D+ V+G T DA Sbjct: 133 AINAASASTQLGGLPFSGPIGAVRVALIDGTWVAFPTVEQIGRAVFDMVVAGRIVGTDDA 192 Query: 185 ------VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCA 226 ++MVE EA + D++ + G KP I A+ +LA C Sbjct: 193 GKPDVAIMMVEAEATENVIDLLEGGAAAPTESVVAQGLEAAKPFIAALCTAQQELADACG 252 Query: 227 KE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 P+ D D + +S + ++L + I K R ++ D++K +++ Sbjct: 253 ASAGTAGDFPVFPDYGD--DVYYAVSSVATDELAAALTIAGKAERNQRTDEIKTQVLERL 310 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + + E EI + F + K+VR ++ R+DGR +R +SA+V ++ R HGS+ Sbjct: 311 ADTYPG-REKEIGAAFRALTKKLVRQRIVTDHFRIDGRGITDIRALSAEVAVVPRAHGSA 369 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREI Sbjct: 370 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 429 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PV Sbjct: 430 GHGALAERALVPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 489 Query: 460 AGIAMGLVKD-----GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 AGIAMGLV D GDD F+ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 490 AGIAMGLVSDDIEVEGDDGKRTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 549 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI ++ AL+QA+ RL IL M++ + ++ + PRV + +P D+I VI Sbjct: 550 KLDGIPSQVLAGALEQARDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVI 608 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625 G GKVI I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G Sbjct: 609 GPKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 668 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 VVK DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI Sbjct: 669 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 728 Query: 685 LSM 687 L + Sbjct: 729 LVL 731 >gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom phytoplasma] Length = 716 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 281/697 (40%), Positives = 419/697 (60%), Gaps = 38/697 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 ++E G AR D ++L Y +TVVL T+V+ R + DF PLTV YQE+ YA GKIPG Sbjct: 15 FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73 Query: 76 GYLR-RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 +L R ++EIL SR+IDRS+RPLF ++ E QVI V+ D + + SM+ + Sbjct: 74 SFLTPRRGGSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGS 133 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193 S +L++S +PF + G V IN ++++NP L + +L L V+GT+ V M+E AN Sbjct: 134 SLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHAN 193 Query: 194 QLSEDVVLDAIIFGHNECKPVI---EAIS------KLAKMCAKEPIVIDSKDFSKLEEEM 244 ++SE L+AI F H K + E I K+ K + + F+K ++ Sbjct: 194 EVSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQV 253 Query: 245 SQMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVF 295 Q I +SC + K QI D K+ ++ F E + ++F Sbjct: 254 KQAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLF 308 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + + +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++ VTLG Sbjct: 309 QKLSKQEMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLG 368 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + + +D LS Q FM+HYNF P + G V R APSRREIGHG LA +AI VLP+ Sbjct: 369 CLSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPE 428 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473 FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV D + + Sbjct: 429 EKDFPYTIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKY 488 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI I+ A QAK+GRLHIL Sbjct: 489 VILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILE 548 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGT 592 +M++ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I I+E G K++I+ DG Sbjct: 549 QMNQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGR 608 Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGL 646 V + S+L ++ I S+ +V Y+ +++ + GA C +GL Sbjct: 609 VFVMHSNLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGL 668 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +H++++ + K +DV+K G+TV VK ++RG+I Sbjct: 669 IHVNKM---KFQKITDVLKIGETVLVKCTKINERGRI 702 >gi|300858688|ref|YP_003783671.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686142|gb|ADK29064.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudotuberculosis FRC41] Length = 767 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 287/723 (39%), Positives = 433/723 (59%), Gaps = 48/723 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++A+Q+DG+V TY + T++LAT + ++G DFFPLTV+ +ER Sbjct: 42 DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ D E Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180 VV++ ASAA LSGLP GPV G ++ I GQ++ P ++ + +L +L V+G Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220 Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220 +D A++MVE A + + + D + G KP IE + + Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280 Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270 LA+ AK+ P+ D + +E+++S+ +++ L + + ++ Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 ++ ++++ F SE + I + + + K+VR ++L + R+DGR +RD+ +V Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L+ R HGS+LF RG+TQ + V TL + EQ +DSLS T ++ HYNF P +TGE R Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +G+P RREIGHG LA RA+ PV+P +FPYT+R VSE S+GS+SM +VC S+L+L + Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520 Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 K+ GI ++ AL QA R IL M++V+ ES ++ ++ PR+ + +P +I V Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRITTVTVPVSKIGEV 639 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624 IG GK I I E+TGA ++I++DGTV ++++S AA E I +I + +P+V + + Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAGAAIEKINAIANPQLPKVGERFL 699 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G +VK FGAFV RDGL+HIS+L +R+ K DVV GD V V++LD D+RGKI Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759 Query: 684 KLS 686 L+ Sbjct: 760 SLA 762 >gi|169630188|ref|YP_001703837.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium abscessus ATCC 19977] gi|226702665|sp|B1MD62|PNP_MYCA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169242155|emb|CAM63183.1| Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI [Mycobacterium abscessus] Length = 755 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 292/717 (40%), Positives = 425/717 (59%), Gaps = 50/717 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ G+V+A ET++L+T ++ KD DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLALQAAGSVVAYLDDETMLLSTTAASKTPKDHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ + V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLNPADLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ L+GLPF GPV G +V I GQ+V P +++ ++ D+ V+G Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIEGQWVAFPTVEQLEKAVFDMVVAGRKVGTAGD 201 Query: 181 TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAKM 224 + A++MVE EA +E VV + G KP I A+ +LA Sbjct: 202 SDVAIMMVEAEATDNVIALIDGGAGAPTETVVAE----GLEAAKPFIAALCTAQEELAGS 257 Query: 225 CAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 AK P+ D +D + ++ + E L + I K R ++ D++K ++ Sbjct: 258 AAKPTGEFPLFPDYQD--DVYAAVAAVATEPLSQALSIAGKAERDEKTDEIKVDVLGRLQ 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 E E EI + F + K+VR +L + R+DGR +R +SA+V ++ R HGS+L Sbjct: 316 -EGFDGREKEIGAAFRSLTKKLVRQRILKDQFRIDGRGVTDIRALSAEVAVIPRAHGSAL 374 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P RREIG Sbjct: 375 FERGETQIMGVTTLDMIKMAQQVDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 434 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVA Sbjct: 435 HGALAERALIPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 494 Query: 461 GIAMGLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 GIAMGLV D + F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 495 GIAMGLVSDDIELADGTAERRFVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 554 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK R IL M++ + ++ ++ + PR+ + +P D+I VIG G Sbjct: 555 IPSQVLAAALSQAKDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKG 613 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I E+TGA ++I+DDGTV + ++ A +AA + I +I + +P++ + + G VVK Sbjct: 614 KMINSITEETGANISIEDDGTVFVGAADGASAQAAIDKINAIANPQLPKIGERFLGTVVK 673 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 DFGAFV RDGLVHIS+L +R+AK DVVK GD + V++ D D+RGKI L Sbjct: 674 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKIQVEIADIDNRGKISL 730 >gi|182435576|ref|YP_001823295.1| polynucleotide phosphorylase/polyadenylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776210|ref|ZP_08235475.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus XylebKG-1] gi|226702691|sp|B1VXZ6|PNP_STRGG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|178464092|dbj|BAG18612.1| putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656543|gb|EGE41389.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus XylebKG-1] Length = 737 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/712 (39%), Positives = 424/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + +L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V D + G + KP I+A+ SK AK + Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLDAAKPFIKALCKAQSDLASKAAKPVGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E +++ + +L+ + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVFEALAKAVTSELKQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + ++VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRSLTKQLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIA Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I + + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAQAGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|296394402|ref|YP_003659286.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Segniliparus rotundus DSM 44985] gi|296181549|gb|ADG98455.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Segniliparus rotundus DSM 44985] Length = 737 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 286/722 (39%), Positives = 426/722 (59%), Gaps = 47/722 (6%) Query: 3 DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56 +VH V E + R +K +TG++A+Q+ G+V AT E T VL+ + K DF Sbjct: 7 NVHEVTCELDNGAFGVRTVKFQTGKLAQQAAGSVFATLDEDTSVLSATTFSAQPKSQFDF 66 Query: 57 FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116 FPLTV+ +ER YA G+IPG + RRE RP+ + IL R+IDR +RP F+ +NE Q+++ Sbjct: 67 FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFADGLRNEVQIVVT 126 Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LD 175 V+ + + V+++ AASA+ LSGLPF GP+ G +V I Q+V P +++ Q + D Sbjct: 127 VLSLNPNAVYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLQEAVFD 186 Query: 176 LFVSG--TQD---AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAI 218 + V+G +D AV+MVE EA + +E VV + G KP ++ + Sbjct: 187 MVVAGRVLEDGDVAVMMVEAEATDHAIKLIEGGATKPTEQVVAE----GLEAAKPFLKQL 242 Query: 219 S----KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED----LRVSCFIPEKYVRCKQIDD 270 + LA + KE + + F ++++ ++ + L + +P K R +I+ Sbjct: 243 AIAQEALAAVAGKE--AFELQQFHPYQQDVYDAVEFNAGAVLSEALSLPGKVEREARIEA 300 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 +K + + + E EI + F + K+VR +L R+DGR +R +SA++ Sbjct: 301 IKAEAKAQLEPQFEG-RESEISAAFRSLNKKLVRERILSDGFRIDGRGLRDIRPLSAEIS 359 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 + R HGS+LF RG+TQ + V TL + Q VD+L + +M HYNF P +TGE R Sbjct: 360 PVPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVSKRHYMHHYNFPPYSTGETGR 419 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +G+P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L+ Sbjct: 420 VGSPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLA 479 Query: 451 AGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVPI PVAGIAMGLV +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 480 AGVPIKAPVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTADFVTALQLD 539 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 K+ GI ++ AL QAK R +L+ ++ + E +L F PR+ + IP D+I V Sbjct: 540 TKLDGIPSQVLAEALAQAKEARDTLLDVIANAIDEP-AELSPFAPRITTIKIPVDKIGEV 598 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624 IG GK+I I E+TGA ++I+DDGTV +A++S +AA + I +I + +P+V + Y Sbjct: 599 IGPKGKMINSITEETGANISIEDDGTVYVAAASGDSAQAAIDKINAIANPQLPKVGERYL 658 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G VVK FGAFV +DGLVHIS+L +R+ DVV+ G + V++ D DDRGKI Sbjct: 659 GTVVKTTAFGAFVSLTPGKDGLVHISKLGNGKRIVSVEDVVQIGSKLRVEIADIDDRGKI 718 Query: 684 KL 685 L Sbjct: 719 SL 720 >gi|134102361|ref|YP_001108022.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora erythraea NRRL 2338] gi|187611285|sp|A4FM22|PNP_SACEN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133914984|emb|CAM05097.1| putative guanosine pentaphosphate synthetase and polyribonucleotide nucleotidyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 750 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/709 (39%), Positives = 422/709 (59%), Gaps = 39/709 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+V+A + T++L+ + K+ DFFPLTV+ +ER YA Sbjct: 23 FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D + V+ Sbjct: 83 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 142 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ ASA+ LSGLPF GPV G ++ I+GQ+V P ++ ++ D+ V+G A Sbjct: 143 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 202 Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKMCAKE-------- 228 ++MVE EA + + +V + + G KP I + + + A+ Sbjct: 203 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 262 Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 P+ D F+ +E+ S + E L+++ K R ++D++K ++ + Sbjct: 263 PVFPAYADDAFTAVEQAASAELAEALKIAS----KQERENRLDEIKAAVLEKVGTGEGEQ 318 Query: 287 NEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 EG E+ + F + K+VR ++ +VR+DGR +R +SA+VG++ R HGS+LF R Sbjct: 319 FEGREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFER 378 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +DSLS +M HYNF P +TGE R+G+P RREIGHG Sbjct: 379 GETQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGA 438 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY LR VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIA Sbjct: 439 LAERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIA 498 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 499 MGLVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQ 558 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ R IL M++ + + ++ PRV ++IP D+I VIG GK+I I E Sbjct: 559 ALGQARDARFTILEVMAEAIGKPD-EMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITE 617 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 +TGA++ I+DDGT+ + ++ EAA + I +I + +P+V + + G VVK FGAFV Sbjct: 618 ETGAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFV 677 Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGLVHIS+L +R+ K DVV GD + V++ D D RGKI L Sbjct: 678 SLLPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 726 >gi|291009326|ref|ZP_06567299.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora erythraea NRRL 2338] Length = 747 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/709 (39%), Positives = 422/709 (59%), Gaps = 39/709 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+V+A + T++L+ + K+ DFFPLTV+ +ER YA Sbjct: 20 FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D + V+ Sbjct: 80 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ ASA+ LSGLPF GPV G ++ I+GQ+V P ++ ++ D+ V+G A Sbjct: 140 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 199 Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKMCAKE-------- 228 ++MVE EA + + +V + + G KP I + + + A+ Sbjct: 200 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 259 Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 P+ D F+ +E+ S + E L+++ K R ++D++K ++ + Sbjct: 260 PVFPAYADDAFTAVEQAASAELAEALKIAS----KQERENRLDEIKAAVLEKVGTGEGEQ 315 Query: 287 NEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 EG E+ + F + K+VR ++ +VR+DGR +R +SA+VG++ R HGS+LF R Sbjct: 316 FEGREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFER 375 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +DSLS +M HYNF P +TGE R+G+P RREIGHG Sbjct: 376 GETQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGA 435 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY LR VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIA Sbjct: 436 LAERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIA 495 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 496 MGLVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQ 555 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ R IL M++ + + ++ PRV ++IP D+I VIG GK+I I E Sbjct: 556 ALGQARDARFTILEVMAEAIGKPD-EMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITE 614 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 +TGA++ I+DDGT+ + ++ EAA + I +I + +P+V + + G VVK FGAFV Sbjct: 615 ETGAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFV 674 Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGLVHIS+L +R+ K DVV GD + V++ D D RGKI L Sbjct: 675 SLLPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 723 >gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium ferrooxidans DSM 10331] gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium ferrooxidans DSM 10331] Length = 792 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/712 (39%), Positives = 421/712 (59%), Gaps = 31/712 (4%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 PL+ ETG++A Q++GAV+A G T VL T + +++G DFFPLTV+ +ER YA GKIP Sbjct: 16 PLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVDVEERMYAAGKIP 75 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 G + RRE R T+ IL +R+IDR +RP F+ ++NE V+ V+ DL + V+++ AA Sbjct: 76 GSFFRREGRATDQAILTARLIDRPLRPSFADGFRNEVHVVATVLGADLVNPHDVLAINAA 135 Query: 135 SAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186 SAALM+SGLPFEGP+ +V +G ++ P + D S +L V+G T A++ Sbjct: 136 SAALMVSGLPFEGPIGAVRVALAADGSWIPFPTFQQGDASSFELVVAGRKTSDGTDIAIM 195 Query: 187 MVE----------LEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 MVE EAN +E V + ++ + IE +L P + Sbjct: 196 MVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQEELVAKLDHRPTFAWT 255 Query: 235 --KDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291 +D+ + + ++++ +E L + +K R +D + + + E E E+ Sbjct: 256 PMRDYEEDVLVRVNEVGRERLAAANAHTDKVTRQDALDAAGDAIWAELADEFPE-REREV 314 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + + ++VR + + VR+DGRD+ T+R + +VGL+ HGS LF RG+TQ + + Sbjct: 315 RAAIRRVTKEIVRERITREGVRIDGRDTTTIRPLLIEVGLIPTAHGSGLFQRGETQVLNI 374 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TLG Q +D+L + +M HYN P ATGE M P RREIGHG LA RA+ P Sbjct: 375 CTLGMPRMNQQLDTLGVDEEKRYMHHYNMPPFATGETGFMRGPKRREIGHGLLAERALVP 434 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 VLP ++FPY LR+VSE+ S+GS+SMA+VCGS+L+LMDAGVPI V GIAMGL+ Sbjct: 435 VLPPESEFPYALRLVSEVLSSNGSTSMASVCGSTLSLMDAGVPIRAAVGGIAMGLIAHDG 494 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + L+DI G ED G MDFKVAGT +TA+Q+D KI GI ++ AL+QA++ R+ I Sbjct: 495 VYTTLTDILGAEDAFGDMDFKVAGTREFVTALQLDTKIDGIPSEVLAAALEQARQARVSI 554 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L++M V+ R ++ E PR+ +P D++ +IG GK I + ++TGA V+IDDDG Sbjct: 555 LDQMLAVIPAPRSEVAETAPRLITFQVPLDKVGEIIGPKGKTINTLQQETGADVSIDDDG 614 Query: 592 TVKIASSSLAEIEAAREM---IRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGL 646 V +IEAARE I+ I + P+ + ++Y+G+VV + FGAFV+ +DGL Sbjct: 615 VVGTVVIGARDIEAAREAERRIQLILNPPQATLGEVYEGKVVGMTKFGAFVNVLPGKDGL 674 Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 VHIS+L +RV + DV++ G + V++ D D GK+ LS+ V D+N P Sbjct: 675 VHISKLGRGKRVERVEDVLEMGQVLKVRVDDIDPSGKLSLSI-VDDENGETP 725 >gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325] gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325] Length = 618 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 255/561 (45%), Positives = 376/561 (67%), Gaps = 7/561 (1%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 +WAG+ L +E G +ARQ++ AV+ YG+TVVL T V + KD DFFPLTVNY+E+ YA Sbjct: 11 KWAGKELTVEIGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VGKIPGG+LRRE RP L +R+IDR IRPLF ++NE QVI V+ + + P + Sbjct: 70 VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188 +M+ +S +L +S +PF+GP+ G V YI+G+Y++NP +++ ++ +DL V+GT DA+ MV Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEIDLKVAGTSDAINMV 189 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247 E A ++SE+++L+AI+FGH E K +I ++ + +E + ++ K + + E+ ++ Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVEEIGQEKMEVELKVIDENIYNEVLEL 249 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303 +++ + I +K R + I +K+K+V+ F S +E +IV + I V Sbjct: 250 ALSEMKSAISIKDKQERDEAISAVKEKVVAIFEERASEEDELDIVKEAKLSLDKIVKDEV 309 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + + KVR DGR +R +++++ +L RTHGS+LF RG TQ++ VVTLG DEQ + Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D L+ + FM+HYNF + GEV AP RREIGHG L RA+ V+P FPYT+ Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 RIVSEI ES+GSSS AT+C S+ALM AGVPI VAGIAMGLVK + + IL+DI G E Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKVAGT GITA+QMD+KI G+SE I+ +L+QA+ GRL IL+ M++ +S R Sbjct: 490 DHLGDMDFKVAGTTDGITALQMDIKIDGLSEQILKESLEQARIGRLQILDHMNETISAPR 549 Query: 544 LQLGEFTPRVEIMAIPPDQIR 564 ++ + P+++I+ I P++++ Sbjct: 550 EEVSTYAPKIKIIKIKPEKLK 570 >gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 823 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 289/694 (41%), Positives = 417/694 (60%), Gaps = 26/694 (3%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 ++LETG+I Q++GAV A+ GETV+ T R F PLTVNY ER A G+ G Sbjct: 80 VRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFSAAGRTSG 139 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 GY +R+ ENE L +R++DR IRP+ K + ETQV+ +M D E S +++ AAS Sbjct: 140 GYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDALAITAAS 199 Query: 136 AALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 AAL +S +P + PVVG +V + G + V+NP ++ Q LDL ++GT +AVLM+E Sbjct: 200 AALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAVLMIEGFC 259 Query: 193 NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 + L+ D +L AI G CK + + +A + +++ + ++E ++ ++ Sbjct: 260 DFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPEG---VDEAVAALV 316 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 +++L+ + +P K R I +++ V E + +++ I+++ +R V+ Sbjct: 317 EDELKQAIVVPIKQERGAMIGAARERAVEALQDE---FQASAVINACGKIESRALRDVIR 373 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 K R DGR + +R I+ + G+L RTHGSSLF RG+TQAI V TLG +D Q D + Sbjct: 374 TKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEA 433 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + FM+HY F P + GE R G SRREIGHG LA RA+ P+LP FP+ ++ S Sbjct: 434 GEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLEST 493 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KDGDDF--IILSDIS 480 ITES+GSSSMATVC +LAL+DAGVPI + VAGIAMGL+ GD+ I+L+DI Sbjct: 494 ITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDELEPIVLTDIL 553 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G ED LG MDFKVAG GITA QMD+K+ GI+ ++M AL++A++G +HIL EM K Sbjct: 554 GSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEMEKCDP 613 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597 ++ PR+ +A+P VIG GG+ IR I+E+TGA+ NID + V + Sbjct: 614 APAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAE-NIDVNKEKEMVFVTG 672 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTER 656 + A+++AA MI + PEV KIY+G VV KV++FG FV + +GLVHIS+L R Sbjct: 673 GADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLVHISELDVSR 732 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 V SDV EG + VK++ D+RGK LS K V Sbjct: 733 VPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEV 766 >gi|15609920|ref|NP_217299.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis H37Rv] gi|15842321|ref|NP_337358.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis CDC1551] gi|31793959|ref|NP_856452.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis AF2122/97] gi|121638663|ref|YP_978887.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662625|ref|YP_001284148.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis H37Ra] gi|148823971|ref|YP_001288725.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis F11] gi|167968613|ref|ZP_02550890.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis H37Ra] gi|215412596|ref|ZP_03421324.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis 94_M4241A] gi|215428215|ref|ZP_03426134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis T92] gi|215447035|ref|ZP_03433787.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis T85] gi|219558792|ref|ZP_03537868.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis T17] gi|224991155|ref|YP_002645844.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798133|ref|YP_003031134.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis KZN 1435] gi|254232881|ref|ZP_04926208.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI : guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis C] gi|254365434|ref|ZP_04981479.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI : guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|254551842|ref|ZP_05142289.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187800|ref|ZP_05765274.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis CPHL_A] gi|289444328|ref|ZP_06434072.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis T46] gi|289448441|ref|ZP_06438185.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis CPHL_A] gi|289553430|ref|ZP_06442640.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis KZN 605] gi|289570962|ref|ZP_06451189.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis T17] gi|289746586|ref|ZP_06505964.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis 02_1987] gi|289751440|ref|ZP_06510818.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis T92] gi|289758910|ref|ZP_06518288.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis T85] gi|289762955|ref|ZP_06522333.1| guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis GM 1503] gi|294994124|ref|ZP_06799815.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis 210] gi|297635394|ref|ZP_06953174.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis KZN 4207] gi|297732392|ref|ZP_06961510.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis KZN R506] gi|298526249|ref|ZP_07013658.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|306780966|ref|ZP_07419303.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu002] gi|306785594|ref|ZP_07423916.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu003] gi|306790189|ref|ZP_07428511.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu004] gi|306794273|ref|ZP_07432575.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu005] gi|306798691|ref|ZP_07436993.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu006] gi|306804546|ref|ZP_07441214.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu008] gi|306807414|ref|ZP_07444082.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu007] gi|307085479|ref|ZP_07494592.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu012] gi|308378098|ref|ZP_07668668.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu009] gi|313659724|ref|ZP_07816604.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis KZN V2475] gi|81421764|sp|Q7TXW0|PNP_MYCBO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81669114|sp|O33325|PNP_MYCTU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610286|sp|A1KMC6|PNP_MYCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610290|sp|A5U6D6|PNP_MYCTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782730|sp|C1AFP7|PNP_MYCBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2624305|emb|CAA15578.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE + POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium tuberculosis H37Rv] gi|13882616|gb|AAK47172.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis CDC1551] gi|31619553|emb|CAD94991.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE + POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium bovis AF2122/97] gi|121494311|emb|CAL72789.1| Bifunctional protein polyribonucleotide nucleotidyltransferase gpsI: guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601940|gb|EAY60950.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI : guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis C] gi|134150947|gb|EBA42992.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI : guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis str. Haarlem] gi|148506777|gb|ABQ74586.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis H37Ra] gi|148722498|gb|ABR07123.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI: guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis F11] gi|224774270|dbj|BAH27076.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319636|gb|ACT24239.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis KZN 1435] gi|289417247|gb|EFD14487.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis T46] gi|289421399|gb|EFD18600.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis CPHL_A] gi|289438062|gb|EFD20555.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis KZN 605] gi|289544716|gb|EFD48364.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis T17] gi|289687114|gb|EFD54602.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis 02_1987] gi|289692027|gb|EFD59456.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis T92] gi|289710461|gb|EFD74477.1| guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis GM 1503] gi|289714474|gb|EFD78486.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis T85] gi|298496043|gb|EFI31337.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|308326219|gb|EFP15070.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu002] gi|308329777|gb|EFP18628.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu003] gi|308333383|gb|EFP22234.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu004] gi|308337406|gb|EFP26257.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu005] gi|308341071|gb|EFP29922.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu006] gi|308346145|gb|EFP34996.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu007] gi|308348876|gb|EFP37727.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu008] gi|308353596|gb|EFP42447.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu009] gi|308365003|gb|EFP53854.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu012] gi|323718629|gb|EGB27793.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis CDC1551A] gi|326904398|gb|EGE51331.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis W-148] gi|328457906|gb|AEB03329.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis KZN 4207] Length = 752 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q+++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 262 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737 Query: 692 QNT 694 +++ Sbjct: 738 EDS 740 >gi|320008201|gb|ADW03051.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Streptomyces flavogriseus ATCC 33331] Length = 737 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/712 (39%), Positives = 422/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AASA+ +L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V D + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKTLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E +++ ++ +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVLEALTKAVRTELAKALTIAGKQEREAELDRIKEIAGEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIA Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium accolens ATCC 49725] gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium accolens ATCC 49725] Length = 748 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 291/718 (40%), Positives = 424/718 (59%), Gaps = 44/718 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DG+V TY +T++LAT ++ DFFPLTV+ +ER Sbjct: 28 DFGTRTVRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERM 86 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ D E Sbjct: 87 YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYD 146 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180 VV++ ASAA LSGLP G V G ++ I GQ+V P ++ + +L ++ V+G Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206 Query: 181 -------TQD-AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220 +D A++MVE A + + D A+ G KP I EA + Sbjct: 207 RIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266 Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274 LA+ AKE P+ +D F+ +E+ S+ ++ L + + ++ +++ Sbjct: 267 LAERTAKETQEFPLFPAYEDDVFAAVEKAASKKLESLLTIPGKQERDEATNEHMEQVEQD 326 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 ++ F+ + +I + + ++ K+VR +L R+DGR +RD+S +V L+ R Sbjct: 327 LLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVPR 386 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGSSLF RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGSP 446 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L +AGVP Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506 Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 + PVAGIAMGL VK + F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ Sbjct: 507 LKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLD 566 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL+QA+ R IL M++V+ +S ++ P++ + IP ++I +IG Sbjct: 567 GIPSKVLAQALEQARDARATILETMAEVI-DSPDEMSGLAPKITSVKIPVNKIGELIGPK 625 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GK I I E TGA V+I+DDGTV I++ + +AA E + SI + +P+V + + G VV Sbjct: 626 GKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQLPKVGERFLGTVV 685 Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 K + FGAFV RDGL+HIS L ER+ K DVV GD V V++ D D+RGKI L Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEIADIDNRGKISL 743 >gi|307331543|ref|ZP_07610655.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Streptomyces violaceusniger Tu 4113] gi|306882814|gb|EFN13888.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Streptomyces violaceusniger Tu 4113] Length = 752 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 285/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTVSKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E ++ D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227 A++MVE EA Q + +V D + G KP I+ + K A+ Sbjct: 197 AIMMVEAEATQQTIQLVKDGAEAPTEEIVAAGLEASKPFIKVLCKAQADLAAKAAKPTAE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++++L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDFQD--DILEALTAAVRDELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRALTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+L+ R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I + EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAVDGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+K G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL 720 >gi|215404753|ref|ZP_03416934.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis 02_1987] gi|218754524|ref|ZP_03533320.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis GM 1503] gi|260201911|ref|ZP_05769402.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis T46] gi|308380469|ref|ZP_07669200.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu011] gi|308361392|gb|EFP50243.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu011] Length = 743 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q+++ ++ D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 192 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 193 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 252 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 253 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 310 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 311 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 370 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 371 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 430 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 431 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 490 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 491 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 550 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 551 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 609 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 610 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 669 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 670 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 728 Query: 692 QNT 694 +++ Sbjct: 729 EDS 731 >gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola 5H-3-7-4] gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola 5H-3-7-4] Length = 750 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 278/696 (39%), Positives = 430/696 (61%), Gaps = 25/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + D DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQAD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y +ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE P+ A+V +NG++++NP R ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE--EMSQMIK 249 +++SE+ + +AI F H K A KLA+ K+ +++++ E E++Q I Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCAAQVKLAEAFGKK----ETREYEPEREDAELAQKIH 249 Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + K+ R ++K+++ + FS E + G + + + VR Sbjct: 250 DMAYDKVYAVAQAGSAKHERSAAFAEIKEEIKATFSEEELADFGGLVSKYYSKAEKAAVR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L++ +R+DGR ++ +R I +V L THGSS+F RG+TQA+ VTLGT + +D Sbjct: 310 DLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P+ PYT+R Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482 +VSEI ES+GSSSMATVC ++A+MDAGV + KPV+GIAMGL+ D D + +LSDI GD Sbjct: 428 VVSEILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+K+ G+S I+V AL+QA+ GRLHIL+++++ + Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITETIETP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 + + P + IP + I +IG GGKVI+ + ++T + I++D G V+I Sbjct: 548 NADVKDHAPTMVSRRIPNEFIGALIGPGGKVIQEMQKETDTTIVINEDPVTEEGIVEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 I+A I ++ P+V IY+ +V+K++DFGA V + A + L+H+S+L+ E Sbjct: 608 VGRKGIDAVMAKIDALLFKPQVGSIYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 R SDVV GD VK D R K K+S K + Sbjct: 668 RTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAI 703 >gi|229820964|ref|YP_002882490.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Beutenbergia cavernae DSM 12333] gi|259534112|sp|C5BWR2|PNP_BEUC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229566877|gb|ACQ80728.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Beutenbergia cavernae DSM 12333] Length = 744 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/708 (40%), Positives = 420/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAVLAT E TVVL+T + K+ DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLAKQAAGAVLATLDEDTVVLSTTAAGKHPKEQFDFFPLTVDVEERQYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF K +NE QV+ ++ + S V+ Sbjct: 78 AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVETILAIHPDDSYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ +SGLPF GPV G +V I+G +V PR E ++ D+ V+G A Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVALIDGTWVGFPRYSEKERAVFDMVVAGRVVGDDVA 197 Query: 185 VLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKLAKMCA----KEPIV 231 + MVE EA + +++ + + G KP I A+ + A KE V Sbjct: 198 ITMVEAEATDNAWELIKGEGAGAPTEEVVAEGLEAAKPFIRALCEAQAALASRAAKEVQV 257 Query: 232 IDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 F + E + + Q + + L + I +K R ++D++K V + Sbjct: 258 FPV--FPEYEPDAYDAVEQQVADHLDAALRIADKQERESRLDEIKDAAVGALQAGFDG-R 314 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E E+ + + + K +R +L R+DGR + +R ++A+V +L R HGS+LF RG+TQ Sbjct: 315 EKELSAAYRALTKKFIRRHILTDSFRIDGRGLKDIRPLTAEVEVLPRVHGSALFERGETQ 374 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL + EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 375 ILGVTTLNMLKMEQQLDTLSPVSRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ PVAGIAMGLV Sbjct: 435 ALVPVLPARDEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLRAPVAGIAMGLV 494 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Q Sbjct: 495 SDEVDGETRYATLTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGALSQ 554 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M++ + ++ ++ PRV + +P D+I VIG GK+I I + TGA Sbjct: 555 AREARLHILDVMAEAI-DTPDEMAATAPRVITVQVPVDKIGEVIGPKGKMINQIQDDTGA 613 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++I+DDGTV I ++ EAAR+ I +I + +PEV + + G VVK FGAFV Sbjct: 614 DISIEDDGTVFIGATDGPSAEAARQAINAIANPHMPEVGERFVGTVVKTTSFGAFVSLTP 673 Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 674 GKDGLLHISQIRRLVGGKRVENVEDVLGVGQKVQVEIAEIDPRGKLSL 721 >gi|308232239|ref|ZP_07664037.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu001] gi|308379315|ref|ZP_07668942.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu010] gi|308214573|gb|EFO73972.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu001] gi|308357442|gb|EFP46293.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis SUMu010] Length = 831 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 101 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 160 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q+++ ++ D V+ Sbjct: 161 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 220 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 221 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 280 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 281 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 340 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 341 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 398 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 399 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 458 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 459 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 518 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 519 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 578 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 579 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 638 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 639 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 697 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 698 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 757 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 758 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 816 Query: 692 QNT 694 +++ Sbjct: 817 EDS 819 >gi|282866915|ref|ZP_06275947.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Streptomyces sp. ACTE] gi|282558228|gb|EFB63798.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Streptomyces sp. ACTE] Length = 737 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 285/712 (40%), Positives = 421/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ +L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V D + G KP I+A+ +K AK + Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKALCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E ++ + +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVLEALTGAVSTELAKALTIAGKQEREAELDRIKEIAAEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIA Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|260206095|ref|ZP_05773586.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis K85] gi|289575481|ref|ZP_06455708.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis K85] gi|289539912|gb|EFD44490.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI [Mycobacterium tuberculosis K85] Length = 752 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE Q+++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 262 V-DFLVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737 Query: 692 QNT 694 +++ Sbjct: 738 EDS 740 >gi|187611321|sp|A9WPX4|PNP_RENSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 746 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/711 (39%), Positives = 421/711 (59%), Gaps = 41/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + + T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ A+S + LSGLPF GP+ G +V I Q+V PR E ++ ++ V+G A Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 197 Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVIEAISKLA--------KMCAK 227 ++MVE EA S +++ + + G KP I+A+ + K + Sbjct: 198 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 257 Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 PI +D +D F + + + E +++ +K R D LK ++VS SS+ Sbjct: 258 FPIFLDYQDDIFEAVNAAAAAKLTEVFQIA----DKQERDNASDALKDEVVSSLSSKFDG 313 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E EI + F + +VVR +L ++R+DGR +R ++A+V +L R HGS++F RG+ Sbjct: 314 -REKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGE 372 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL + EQ +DSLS R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 373 TQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMG Sbjct: 433 ERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 492 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Sbjct: 493 LVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAAL 552 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +QA+ RLHIL ++ + +L EF PRV + IP D+I VIG GK+I I E T Sbjct: 553 KQAREARLHILGVLNAAIDVPD-ELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDT 611 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGTV I +++ +AAR I +I + +PE+ + Y G VVK FGAFV Sbjct: 612 GADISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSL 671 Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+H+++L +RV DVV G + V++ DDRGK+ LS Sbjct: 672 TPGKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 722 >gi|163839428|ref|YP_001623833.1| polynucleotide phosphorylase/polyadenylase [Renibacterium salmoninarum ATCC 33209] gi|162952904|gb|ABY22419.1| polyribonucleotide nucleotidyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 778 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 284/711 (39%), Positives = 421/711 (59%), Gaps = 41/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + + T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 50 FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 109 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 110 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 169 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ A+S + LSGLPF GP+ G +V I Q+V PR E ++ ++ V+G A Sbjct: 170 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 229 Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVIEAISKLA--------KMCAK 227 ++MVE EA S +++ + + G KP I+A+ + K + Sbjct: 230 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 289 Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 PI +D +D F + + + E +++ +K R D LK ++VS SS+ Sbjct: 290 FPIFLDYQDDIFEAVNAAAAAKLTEVFQIA----DKQERDNASDALKDEVVSSLSSKFDG 345 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E EI + F + +VVR +L ++R+DGR +R ++A+V +L R HGS++F RG+ Sbjct: 346 -REKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGE 404 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL + EQ +DSLS R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 405 TQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 464 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMG Sbjct: 465 ERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 524 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Sbjct: 525 LVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAAL 584 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +QA+ RLHIL ++ + +L EF PRV + IP D+I VIG GK+I I E T Sbjct: 585 KQAREARLHILGVLNAAIDVPD-ELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDT 643 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGTV I +++ +AAR I +I + +PE+ + Y G VVK FGAFV Sbjct: 644 GADISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSL 703 Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+H+++L +RV DVV G + V++ DDRGK+ LS Sbjct: 704 TPGKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 754 >gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus torquis ATCC 700755] gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus torquis ATCC 700755] Length = 683 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 278/677 (41%), Positives = 416/677 (61%), Gaps = 21/677 (3%) Query: 36 GETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRM 94 G+T++L TVV S K+ + DFFPLTV+Y+E+ A G+ PGG+ +RE+RP++ E+L R+ Sbjct: 2 GDTMLLCTVV--SSYKESKMDFFPLTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRI 59 Query: 95 IDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV 154 +DR +RPLF Y+ ETQV+I +M HD + P ++ +AASAA+ LS +PFE + A+V Sbjct: 60 VDRVLRPLFPSDYRTETQVMIQLMSHDEDVMPDALAGLAASAAIQLSDIPFETAISEARV 119 Query: 155 DYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213 ING++V+NP R + +D+ + + D+V+MVE E ++SE+ + +AI F H K Sbjct: 120 ARINGEFVINPSRSQLKESDIDMIIGASMDSVMMVEGEMKEISEEEMAEAIQFAHEHIKK 179 Query: 214 VIEAISKLAKMCAKEPI-----VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI 268 +EA +LA+ K+P+ D++DF K +++ + ++ K R + Sbjct: 180 QVEAQLRLAEAFGKKPVREYAVTEDNEDFEKKIHDLA--YDKIYEIAKGGHSKKDRGEAF 237 Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328 +K + ++ FS E NE I + + VR + L + +R+DGR ++ +R I + Sbjct: 238 SAVKDEAMALFSEEELEGNEKLIKKYYNKTEKAAVRELTLAEGLRLDGRKTDEIRPIWCE 297 Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388 V L HGS++F RG+TQA+ VTLGT + +D + F +HYNF P TGE Sbjct: 298 VAYLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGEEKFYLHYNFPPFCTGEA 357 Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448 + SRREIGHG LA+RA+ ++P++ PYT+RIVSE+ ES+GSSSMATVC ++A+ Sbjct: 358 YPIRGTSRREIGHGNLAQRALKGMIPESN--PYTVRIVSEVLESNGSSSMATVCAGTMAM 415 Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508 MDAG+ + KPV+GIAMGL+ DGD +LSDI GDEDHLG MDFKV GT GITA QMD+K Sbjct: 416 MDAGIKMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIK 475 Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 + G+ I+V ALQQA+ GRLHIL +++ +S + P++ IP + I +IG Sbjct: 476 VKGLPYEILVKALQQARAGRLHILEKLTDTISLPNENVKAHAPKIITRRIPNEFIGALIG 535 Query: 569 MGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623 GGKVI+ + + TG ++ I++D G V+I + I+ I S+T PE +Y Sbjct: 536 PGGKVIQELQKSTGTEIVINEDPVTEEGIVEILGTKQEGIDKVLAKIDSVTFKPEKGSVY 595 Query: 624 KGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + VVKV+DFGA V + A + L+HIS+L+ ER +DV+K GD + VK D R Sbjct: 596 EVTVVKVLDFGAVVEYNDAPGNEVLLHISELAWERTENVADVMKLGDVLDVKYFGVDPRT 655 Query: 681 GKIKLSMKVVDQNTGKP 697 K K+S K + + +P Sbjct: 656 KKPKVSRKALLKKPERP 672 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 RP+ E + G+ + T GET LATV S + P T +E+ Y Sbjct: 292 RPIWCEVAYLP-SVHGSAIFTRGETQALATVTLGTSREASTIDMP-THQGEEKFYLHYNF 349 Query: 74 PGGYLRRESRP----TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 P + E+ P + EI + R+++ + + +++ V++ + SS + Sbjct: 350 P-PFCTGEAYPIRGTSRREIGHGNLAQRALKGMIPESNPYTVRIVSEVLESNGSSS--MA 406 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING---QYVLNPRL-DEDQ-GSLDLFVSGTQDA 184 ++ A + A+M +G+ + PV G + I+ VL+ L DED G +D V+GT D Sbjct: 407 TVCAGTMAMMDAGIKMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADG 466 Query: 185 VLMVELE 191 + +++ Sbjct: 467 ITACQMD 473 >gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS] gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS] Length = 416 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/413 (56%), Positives = 305/413 (73%) Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 S+E W+E +++ V E ++ +VR+ ++ K R+DGRD+ TVR I+ + G+L RTHGS Sbjct: 3 MSTETEDWSENQVLQVIEKLEKNIVRSDIIAGKPRIDGRDTRTVRPITIRTGVLPRTHGS 62 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQA+VV TLGT D Q +D+L G + F++HYNF P GEV R+G P RRE Sbjct: 63 ALFTRGETQALVVTTLGTERDAQIIDALEGEYKEGFLLHYNFPPYCVGEVGRIGTPKRRE 122 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 +GHGRLARR + V+P + FPY++R+VSEITES+GSSSMATVCG+SLALMDA VPI P Sbjct: 123 LGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSSSMATVCGASLALMDAAVPIKAP 182 Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 VAGIAMGL+K+ + F++L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+ IM Sbjct: 183 VAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVAGTLEGVTALQMDIKIDGITREIME 242 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 AL QAK GRLHIL+ M K L++ R ++ E PR+ I PD+IR VIG GG IR I Sbjct: 243 TALAQAKDGRLHILSVMDKALAKPRSEMSEHAPRIITFKIKPDKIREVIGKGGATIRAIT 302 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638 EQTGA V+I+D+G +KIAS L E AR I IT EV K+Y+G+VVK+MDFGAFV Sbjct: 303 EQTGAMVDINDEGVIKIASVDLIAGEKARRRIEEITSDIEVGKVYEGKVVKLMDFGAFVT 362 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +DGL+HISQ+ ERV K SD +KEG+TV VK+L+ D +G+I+LSMK V+ Sbjct: 363 ILPGKDGLLHISQICEERVEKVSDKLKEGETVRVKVLEVDKQGRIRLSMKAVN 415 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 22/192 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66 RP+ + TG + R + G+ L T GET +V+ T+ +R + +G+ ++Y Sbjct: 47 RPITIRTGVLPR-THGSALFTRGETQALVVTTLGTERDAQIIDALEGEYKEGFLLHYNFP 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLES 124 Y VG++ R P E+ R+ R ++ + S+ + +++ + + + S Sbjct: 106 PYCVGEVG-----RIGTPKRRELGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSS 160 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GSLDLFVS 179 S + ++ AS ALM + +P + PV G + I + Q+V+ + DED G +D V+ Sbjct: 161 S--MATVCGASLALMDAAVPIKAPVAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVA 218 Query: 180 GTQDAVLMVELE 191 GT + V ++++ Sbjct: 219 GTLEGVTALQMD 230 >gi|289754889|ref|ZP_06514267.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis EAS054] gi|289695476|gb|EFD62905.1| polyribonucleotide nucleotidyltransferase [Mycobacterium tuberculosis EAS054] Length = 752 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 287/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F ++E Q+++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLDPGDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 262 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737 Query: 692 QNT 694 +++ Sbjct: 738 EDS 740 >gi|29829065|ref|NP_823699.1| polynucleotide phosphorylase/polyadenylase [Streptomyces avermitilis MA-4680] gi|81720032|sp|Q82K80|PNP_STRAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29606171|dbj|BAC70234.1| putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces avermitilis MA-4680] Length = 738 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/712 (39%), Positives = 423/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + K+ DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKENLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227 A++MVE EA + + +V + + G + KP I+ + K + Sbjct: 197 AIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E ++ +K +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELSQALTIAGKQDREAELDRVKEIAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I + ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|239944720|ref|ZP_04696657.1| polynucleotide phosphorylase/polyadenylase [Streptomyces roseosporus NRRL 15998] Length = 737 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ VM + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228 A++MVE EA + + +V D + G KP I+ + K LA AK Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + + +++ + +L+ + I K R ++D +K+ E Sbjct: 257 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIAMGL+ Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 493 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 613 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|291448178|ref|ZP_06587568.1| polynucleotide phosphorylase/polyadenylase [Streptomyces roseosporus NRRL 15998] gi|291351125|gb|EFE78029.1| polynucleotide phosphorylase/polyadenylase [Streptomyces roseosporus NRRL 15998] Length = 742 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ VM + + VV Sbjct: 82 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 142 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 201 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228 A++MVE EA + + +V D + G KP I+ + K LA AK Sbjct: 202 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 261 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + + +++ + +L+ + I K R ++D +K+ E Sbjct: 262 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 318 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 319 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 378 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 379 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 438 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIAMGL+ Sbjct: 439 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 498 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 499 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 558 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 559 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 617 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 618 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 677 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 678 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 725 >gi|302542113|ref|ZP_07294455.1| polyribonucleotide nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459731|gb|EFL22824.1| polyribonucleotide nucleotidyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 743 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/712 (40%), Positives = 425/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E ++ D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + +V D + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATTQTIQLVKDGAEAPTEEIVAAGLEAAKPYIKVLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++++L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDYQD--DVLEALTAAVRDELSQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALLPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDQRGKLSL 720 >gi|215431723|ref|ZP_03429642.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium tuberculosis EAS054] Length = 743 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 287/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F ++E Q+++ ++ D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLDPGDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AASA+ L GLPF GP+ G +V I+G +V P +D+ ++ D+ V+G A Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 192 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230 ++MVE EA + ++V + G KP I A+ +LA K +P Sbjct: 193 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 252 Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 V D F E++ S + ++L + I K R ++ID++K ++V + + Sbjct: 253 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 310 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+T Sbjct: 311 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 370 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 371 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 430 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAMGL Sbjct: 431 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 490 Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 V D F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 491 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 550 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL+QAK RL IL M++ + ++ + PRV + +P D+I VIG GKVI Sbjct: 551 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 609 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK D Sbjct: 610 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 669 Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + V D Sbjct: 670 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 728 Query: 692 QNT 694 +++ Sbjct: 729 EDS 731 >gi|187610336|sp|A0PQE7|PNP_MYCUA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 762 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+V+ E ++L+ ++ K+ +FFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D VV Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ L+GLPF GPV G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201 Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLA---- 222 T D A++MVE EA ++V + G KP I A+ +LA Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261 Query: 223 ---KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 K A+ P+ + D + +S + + L + I K R ++ +++K +++ Sbjct: 262 ATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + + E EI + F + K+VR ++ R+DGR +R +SA+V L+ R HGS+ Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALSAEVALVPRAHGSA 378 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREI Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PV Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498 Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 AGIAMGLV D + F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK RL IL M++ + ++ ++ + PRV + +P D+I VIG G Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 617 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 KVI I E+T A+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK Sbjct: 618 KVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + Sbjct: 678 TTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 736 >gi|239991184|ref|ZP_04711848.1| polynucleotide phosphorylase/polyadenylase [Streptomyces roseosporus NRRL 11379] Length = 737 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ VM + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228 A++MVE EA + + +V D + G KP I+ + K LA AK Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + + +++ + +L+ + I K R ++D +K+ E Sbjct: 257 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ VAGIAMGL+ Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 493 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I + ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 613 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM 7489] gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM 7489] Length = 747 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 277/697 (39%), Positives = 435/697 (62%), Gaps = 27/697 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G ++L T+V + D DF PLTV+Y+E+ + G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYKQSD-VDFLPLTVDYREKFASAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS +PFE P+ A+V ING++++NP R ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIK 249 ++SE+ + +AI F H K A KLA+ K+ +++++ + +E++++ I Sbjct: 194 MLEISEEEMAEAIKFAHEAIKVQCAAQVKLAEAFGKK----ETREYEPEREDEDLAKKIY 249 Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVV 303 + + K+ R ++K+++ + FS E + + G++VS + + + Sbjct: 250 DMAYDKVYAVAKAGSSKHERSTAFGEIKEEIKATFSEEELA-DYGDLVSKYYAKAEKAAI 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R + LD+ +R+DGR ++ +R I +V L THGSS+F RG+TQA+ VTLGT + + Sbjct: 309 RNLTLDEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQI 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 D S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A PYT+ Sbjct: 369 DMPSYEGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMVP--ADCPYTV 426 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481 R+VSE+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ D + + +LSDI G Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAMGLISDAETGKYAVLSDILG 486 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKV GT+ GITA QMD+K+ G+S I+V AL+QA+ GRLHIL +++ +S Sbjct: 487 DEDHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALKQAREGRLHILGKLTDTISA 546 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596 + +P++ IP + I +IG GGKVI+ + ++TG + I++D G V+I Sbjct: 547 PASDVKSHSPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPETEEGVVEIL 606 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLST 654 + I++ I S+ PE +Y+ +V+K++DFGA V + A + L+H+S+L+ Sbjct: 607 GTGQDGIDSVLAKIDSLLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAW 666 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 ER +DVV GD VK D R K K+S K + Sbjct: 667 ERTENVTDVVNMGDVFDVKYFGVDPRTRKEKVSRKAL 703 >gi|118617705|ref|YP_906037.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium ulcerans Agy99] gi|118569815|gb|ABL04566.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI [Mycobacterium ulcerans Agy99] Length = 753 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+V+ E ++L+ ++ K+ +FFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D VV Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ L+GLPF GPV G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 133 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 192 Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLA---- 222 T D A++MVE EA ++V + G KP I A+ +LA Sbjct: 193 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 252 Query: 223 ---KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 K A+ P+ + D + +S + + L + I K R ++ +++K +++ Sbjct: 253 ATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 310 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + + E EI + F + K+VR ++ R+DGR +R +SA+V L+ R HGS+ Sbjct: 311 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALSAEVALVPRAHGSA 369 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREI Sbjct: 370 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 429 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PV Sbjct: 430 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 489 Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 AGIAMGLV D + F+ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 490 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 549 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK RL IL M++ + ++ ++ + PRV + +P D+I VIG G Sbjct: 550 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 608 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 KVI I E+T A+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK Sbjct: 609 KVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 668 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + Sbjct: 669 TTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 727 >gi|239982654|ref|ZP_04705178.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus J1074] gi|291454495|ref|ZP_06593885.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus J1074] gi|291357444|gb|EFE84346.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus J1074] Length = 735 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AAS + L+GLPF GP+ G +V INGQ+V P E + D+ V+G Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALINGQWVGFPTHTELEDAVFDMVVAGRVLDDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V D + G KP I+A+ +K AK + Sbjct: 197 AIMMVEAEATEKTIQLVKDGAAAPTEEVVAAGLEAAKPFIKALCKAQSELAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E + ++ +L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDYQD--DVLEALKAAVESELAQALTIGGKQEREAELDRVKAVAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + ++VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRALTKELVRRRVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG+ ++ L+DI G ED G MDFKVAGT + +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|262202098|ref|YP_003273306.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM 43247] gi|262085445|gb|ACY21413.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM 43247] Length = 759 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 293/719 (40%), Positives = 417/719 (57%), Gaps = 52/719 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ G+V A E ++L+T + K+ DFFPLTV+ +ER YA Sbjct: 29 FGTRTIRFETGRLALQAAGSVTAYLDDENMLLSTTAASKHPKEHFDFFPLTVDVEERMYA 88 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM + VV Sbjct: 89 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPNDLYDVV 148 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDL-----F 177 ++ AASA+ L+GLPF GPV G +V I GQ+V P +++ +G+ D+ Sbjct: 149 AINAASASTQLAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRI 208 Query: 178 VSGTQDA----VLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKL 221 VSG DA ++MVE EA +++ +AI+ G KP I EA L Sbjct: 209 VSGEGDAADVAIMMVEAEATDKVLEIIAGGAQAPTEAIVAEGLEAAKPFIARLCEAQKSL 268 Query: 222 AKMCAKE--------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273 A AKE P D+ D + K+ L IP K R ++ D+LK Sbjct: 269 AAAAAKETGEFPLFPPYASDAYD------AVEAAAKDRLSEILTIPGKQERDEKTDELKD 322 Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333 +++ E E EI + + + K+VR +L R+DGR +R +SA+V ++ Sbjct: 323 DILAQLG-EQFEGREKEIGAAYRSVTKKLVRQRILTDHFRIDGRGITDIRSLSAEVAVIP 381 Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393 R HGS+LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+ Sbjct: 382 RAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGS 441 Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453 P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGV Sbjct: 442 PKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGV 501 Query: 454 PISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 P+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ Sbjct: 502 PLKAPVAGIAMGLVSDTVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKL 561 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GI ++ AL QAK RL IL+ M++ + E ++ + PR+ + IP D+I +IG Sbjct: 562 DGIPSQVLAGALSQAKDARLTILDVMAEAIDEPD-EMSPYAPRITTVKIPMDKIGELIGP 620 Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627 GK I GI E TGA ++I+DDGTV + ++ +AA + I +I + +P+V + + G + Sbjct: 621 KGKTINGITEDTGANISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPKVGERFLGTI 680 Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 VK FGAFV RDGLVHIS+L +R+ K DVV G + V++ D DDRGKI L Sbjct: 681 VKTTAFGAFVSLLPGRDGLVHISKLGKGKRINKVEDVVNVGSKLRVEIADIDDRGKISL 739 >gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 3_1_12] gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 3_1_12] Length = 711 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/652 (40%), Positives = 405/652 (62%), Gaps = 25/652 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 69 VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 127 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 128 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 187 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+G++V+NP D+ ++ +D+ V+ T Sbjct: 188 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMVAATY 247 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++MVE E +++SE +L+A+ H K +A +L +M K + E Sbjct: 248 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 301 Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 E + +++ + +C+ K+ R D ++ + + FS E I Sbjct: 302 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 361 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 362 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 421 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ + Sbjct: 422 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 481 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P+ +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 482 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 539 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 540 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 599 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++ + ++E R +L + PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 600 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 659 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 D+ G ++I+ ++ I+ A +I+ I VPE+ ++YKG+V +M +GAFV F Sbjct: 660 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 711 >gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis 3_1_12] Length = 648 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/652 (40%), Positives = 405/652 (62%), Gaps = 25/652 (3%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF + E V I + D Sbjct: 65 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+G++V+NP D+ ++ +D+ V+ T Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMVAATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++MVE E +++SE +L+A+ H K +A +L +M K + E Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 238 Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 E + +++ + +C+ K+ R D ++ + + FS E I Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + D++ + +R +LD+ R+DGR + +R I +VG L HGS++F RG+TQ++ V Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 TLGT+ DE+ +D + + F++HYNF P +TGE RREIGHG LA RA+ + Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 418 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470 +P+ +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I KPV+GIAMGL+K+ Sbjct: 419 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + + +LSDI GDEDHLG MDFKV GT GITA QMD+K+ G+S I+ AL QAK GR+H Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587 IL ++ + ++E R +L + PR+E M IP + I VIG GGK+I+G+ E+TGA + I Sbjct: 537 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 D+ G ++I+ ++ I+ A +I+ I VPE+ ++YKG+V +M +GAFV F Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 648 >gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152] gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152] Length = 746 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 277/694 (39%), Positives = 424/694 (61%), Gaps = 23/694 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + LETG++A+Q+ G+V+ G+ ++L TVV + KD DF PLTV+Y+E+ A G+ Sbjct: 15 GRTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y +ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQMMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS LPFE P+ +V +NG++++NP R + +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQLAEADIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMS 245 ++ SE+ + +AI F H K A LA+ K+ ++++++ LE+++ Sbjct: 194 MDECSEEEMAEAIKFAHEAIKVQCAAQVALAEAFGKK----ETREYTPETNDEDLEKKIH 249 Query: 246 QMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 ++ + ++ K+ R ++K+++ + FS E + I Q +R Sbjct: 250 DLVYDKTYEIAKAGSAKHERSAAFSEIKEEVKNSFSEEEQAEYGNLISKYVAKAQKNAIR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + L + +R+DGR + +R I +V L THGSS+F RG+TQA+ VTLGT + +D Sbjct: 310 DLTLKEGLRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S F +HYNF P +TGE + SRRE+GHG LA+RA+ ++P A PYT+R Sbjct: 370 MPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP--ADCPYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ DG + +LSDI GDED Sbjct: 428 VVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAVLSDILGDED 487 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKV GT GITA QMD+KI G+S I+V AL+QA+ GRLHIL +++ + Sbjct: 488 HLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILGKLTDTIETPNS 547 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599 + P++ IP D I IG GGK I+ + ++T + I +D G ++I + Sbjct: 548 DVKAHAPKMITRRIPNDLIGAFIGPGGKHIQELQKETETTIVITEDPVTEEGIIEILGTK 607 Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657 A ++A I S+ PE +Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 608 PAGMDAVITKIESMLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWERT 667 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +DVV GD + VK D R K K+S K + Sbjct: 668 DNVTDVVNLGDVLDVKYFGIDPRTRKEKVSRKAL 701 >gi|256824776|ref|YP_003148736.1| polynucleotide phosphorylase/polyadenylase [Kytococcus sedentarius DSM 20547] gi|256688169|gb|ACV05971.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Kytococcus sedentarius DSM 20547] Length = 842 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 287/725 (39%), Positives = 421/725 (58%), Gaps = 46/725 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE------TVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + R ++ ETGR+A+Q+ G+V A E T+VL+T + KD DFFPLTV+ + Sbjct: 18 YGTRTIRFETGRLAQQAAGSVAAYLVEDDIDDATMVLSTTTAGKEPKDHFDFFPLTVDVE 77 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER YA G+IPG + RRE RP + IL R+IDR +RP F+K +NE QV++ V+ H + Sbjct: 78 ERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPTFTKGLRNEVQVVVTVLAHHPDH 137 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG--T 181 V+++ AASA+ +SGLPF GP+ G ++ I+GQ+V P D + + D+ V+G T Sbjct: 138 QYDVLAINAASASTQISGLPFSGPIGGVRISLIDGQWVAFPNFSDIARSTFDMVVAGRLT 197 Query: 182 QD---AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMC 225 D A++MVE E+ + + E+VV + + + EA + L Sbjct: 198 DDGDVAIMMVEAESTESTWALVNDEGKTAPTEEVVSQGLEASKVFIRALCEAQASLHAAA 257 Query: 226 AKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 KE P +D +D + +E + E L ++ E+ R +I D K ++ Sbjct: 258 GKEVQEFPTFLDFQDDAYQAVESAAEKNTAEALTIAG-KQEREGRLDEIKDSLKADLAGA 316 Query: 280 SSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336 E G E+ + F+ +Q K++R +L VR+DGR + +R +SA+V L R H Sbjct: 317 DEESGKPFAGRAKEVSAAFKALQKKLIRERILRDGVRIDGRGPKDIRALSAEVQALPRVH 376 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 GS++F RG+TQ + V TL EQ +D L+ R +M +YNF P +TGE R+G+P R Sbjct: 377 GSAIFERGETQIMGVTTLNMLRMEQQLDGLNPVTRKRYMHNYNFPPYSTGETGRVGSPKR 436 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 437 REIGHGALAERAILPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLK 496 Query: 457 KPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 PVAGIAMGLV G + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 497 APVAGIAMGLVSAQVDGGTRYQALTDILGAEDAFGDMDFKVAGTKDFVTAIQLDTKLDGI 556 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 + AL QA+ RLHIL+ MS+ + ++ ++ PRV + +P D+I VIG GK Sbjct: 557 PAEELSKALTQAREARLHILDVMSQAI-DAPDEMSPNAPRVIAVKVPVDKIGEVIGPKGK 615 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I E TGA ++I+DDGTV I ++ EAAR + +I + +PE+ + + G VVK Sbjct: 616 MINQIQEDTGADISIEDDGTVYIGATDGPSAEAARSAVNAIANPQMPEIGERFLGTVVKT 675 Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAF+ +DGL+HIS++ +R+ DV+ GD V V+L + D RGK+ L Sbjct: 676 TTFGAFISLLPGKDGLLHISEIRKLVGGKRIDAVEDVLNVGDKVQVELKEIDQRGKLSLG 735 Query: 687 MKVVD 691 V + Sbjct: 736 AVVAE 740 >gi|32141272|ref|NP_733673.1| polynucleotide phosphorylase/polyadenylase [Streptomyces coelicolor A3(2)] gi|256784838|ref|ZP_05523269.1| polynucleotide phosphorylase/polyadenylase [Streptomyces lividans TK24] gi|289768731|ref|ZP_06528109.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans TK24] gi|81445833|sp|Q8CJQ6|PNP_STRCO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24413893|emb|CAD55364.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Streptomyces coelicolor A3(2)] gi|289698930|gb|EFD66359.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans TK24] Length = 739 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/718 (39%), Positives = 423/718 (58%), Gaps = 38/718 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227 A++MVE EA + E + + G + KP I+ + + K + Sbjct: 197 AIMMVEAEATDKTIKLVEGGAEAPTEEVVAAGLDAAKPFIKVLCRAQADLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ +K +L + I K R ++D +K E Sbjct: 257 FPIFLDFQD--DVLEALTGAVKPELTQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGT+ I ++ ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 613 DITIEDDGTIYIGAAQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L + V++ G Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL-IPVIEGEAG 729 >gi|254382116|ref|ZP_04997478.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1] gi|194341023|gb|EDX21989.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1] Length = 745 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/712 (40%), Positives = 420/712 (58%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 82 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 142 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 201 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------- 228 A++MVE EA + + E + + G + KP I+ + K A + Sbjct: 202 AIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLDAAKPFIKVLCKAQADLAAKAAKPEGE 261 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E ++ +K DL + I K R ++D +K+ K++ F Sbjct: 262 FPVFLDYQD--DVYEALAAAVKGDLSQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-- 317 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 318 ---REKEISAAYRSLTKALVRERVIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 374 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 375 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 434 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 435 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 494 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 495 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 554 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ + F PR+ + IP D+I VIG GK+I I E Sbjct: 555 ALKQARDARLHILDVMMEAI-DTPDAMSPFAPRIITVKIPVDKIGEVIGPKGKMINQIQE 613 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I +I + +PEV + Y G VVK FGAFV Sbjct: 614 DTGAEITIEDDGTIYIGAADGPAAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 673 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DVV G V V++ + D RGK+ L Sbjct: 674 SLMPGKDGLLHISQIRKLAGGKRVENVEDVVAVGTKVQVEIAEIDSRGKLSL 725 >gi|297191697|ref|ZP_06909095.1| polynucleotide phosphorylase/polyadenylase [Streptomyces pristinaespiralis ATCC 25486] gi|197721446|gb|EDY65354.1| polynucleotide phosphorylase/polyadenylase [Streptomyces pristinaespiralis ATCC 25486] Length = 738 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 287/722 (39%), Positives = 426/722 (59%), Gaps = 46/722 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + ++V + + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATEKTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E ++ +K +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELAQALTIAGKQERETELDRIKELAAEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ + D ++ L+DI G ED G MDFKVAGT + +TA+Q+D K+ GI +++ Sbjct: 490 MGLISEQIDGETHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L + VV+ Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDSRGKLSL-IPVVEGE 727 Query: 694 TG 695 G Sbjct: 728 EG 729 >gi|297156777|gb|ADI06489.1| polynucleotide phosphorylase/polyadenylase [Streptomyces bingchenggensis BCW-1] Length = 750 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 286/722 (39%), Positives = 428/722 (59%), Gaps = 46/722 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + +V D + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATDKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++++L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDYQD--DVLEALTAAVRDELAQALTIAGKQERETELDRVKGLAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+L+ R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALLPVLPSREDFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLRAPVAGIA 489 Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ DG+ ++ L+DI G ED G MDFKVAGT + +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M++ + ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA + I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +DGL+HISQ+ +RV DV+K G V V++ + D RGK+ L + V++ Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL-IPVIEDE 727 Query: 694 TG 695 G Sbjct: 728 EG 729 >gi|305680822|ref|ZP_07403629.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305659027|gb|EFM48527.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 758 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 294/730 (40%), Positives = 426/730 (58%), Gaps = 59/730 (8%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+ G+V E T++L+TV + ++G DFFPLTV+ +ER Y Sbjct: 31 DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV++ V+ D + V Sbjct: 91 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180 V++ ASAA LSGLP GPV G ++ I GQ+V P ++ +L V+G Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210 Query: 181 -----------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIE- 216 A++MVE A + +E+VV + G KPVIE Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAE----GLEAAKPVIEL 266 Query: 217 ---AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVR----C 265 A LA AKEP + F + + Q ++ + LR I +K R Sbjct: 267 LCLAQRGLADRVAKEPQ--EFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATN 324 Query: 266 KQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 ++ + ++ F+ + + E EI + + + K+VR ++L + R+DGR +RD Sbjct: 325 AYLEQVMDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRD 384 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 + +V L+ R HGSSLF RG+TQ + V TL + EQ +DSL+ T ++ HYNF P + Sbjct: 385 LGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYS 444 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 TGE R+G+P RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S Sbjct: 445 TGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 504 Query: 445 SLALMDAGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 +L+L +AGVP+ PVAGIAMGLV D + ++ L+DI G ED G MDFKVAGT I Sbjct: 505 TLSLYNAGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFI 564 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+Q+D K+ GI ++ AL QA+ RL IL+ M++V+ ++ +F PR+ + +P Sbjct: 565 TALQLDTKLDGIPSKVLADALAQARDARLTILDTMAEVIDIPD-EMSQFAPRITSVKVPV 623 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618 +I VIG GK I I E+TGA+V+I++DGTV I+++S +AA E I +I + +P+ Sbjct: 624 SKIGEVIGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPK 683 Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDF 677 V + + G VVK FGAFV RDGLVHIS+L +RV K DVV GD + V++LD Sbjct: 684 VGERFLGSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDI 743 Query: 678 DDRGKIKLSM 687 D+RGKI L + Sbjct: 744 DNRGKISLGL 753 >gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina MBIC11017] gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina MBIC11017] Length = 646 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 257/629 (40%), Positives = 390/629 (62%), Gaps = 17/629 (2%) Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 +PGG+LRRE RP E L R+IDR +RPLF +++ Q++ + D + P V+++ Sbjct: 1 MPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVT 60 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AS A +L+ +PF+GP+ +V + +++NP +E +G LDL V+G+ D V+MVE Sbjct: 61 GASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDGVIMVEAG 120 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQ 246 AN+++E +++AI FG+ +I+A +L E + D + ++E ++ Sbjct: 121 ANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDPTLENFVQERVTD 180 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSVFEDI 298 +K+ L + F +K VR +D++K+ + + N I VF+ I Sbjct: 181 PVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVENPKAIGKVFKSI 238 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTR 357 ++R +++ KVR+DGR + VR IS VG+L QR HGS LF RG TQ + + TLGT Sbjct: 239 TKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTP 298 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L + ++ HYNF P + GE M +P RRE+GHG LA RA+ P+LP Sbjct: 299 GDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALLPMLPSKE 358 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY LR+VSE+ S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+G++ +L+ Sbjct: 359 EFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLT 418 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G ED LG MDFKVAGT GITA+QMDMKI G+S ++ A+ QAK RLHIL++M Sbjct: 419 DIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKMLA 478 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + R + + PR+ + I P+QI +IG GGK I+GI E+TGAK++I+DDG V I++ Sbjct: 479 TIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKIDIEDDGRVTISA 538 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657 AR++I +T ++ G+V +++ GAFV +++G++HISQL+ RV Sbjct: 539 VDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRV 598 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 K D V GD V VK+ + D+RG+I L+ Sbjct: 599 GKVEDEVTVGDEVVVKIRELDNRGRINLT 627 >gi|225021179|ref|ZP_03710371.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii ATCC 33806] gi|224946086|gb|EEG27295.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii ATCC 33806] Length = 758 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 294/730 (40%), Positives = 426/730 (58%), Gaps = 59/730 (8%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+ G+V E T++L+TV + ++G DFFPLTV+ +ER Y Sbjct: 31 DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV++ V+ D + V Sbjct: 91 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180 V++ ASAA LSGLP GPV G ++ I GQ+V P ++ +L V+G Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210 Query: 181 -----------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIE- 216 A++MVE A + +E+VV + G KPVIE Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAE----GLEAAKPVIEL 266 Query: 217 ---AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVR----C 265 A LA AKEP + F + + Q ++ + LR I +K R Sbjct: 267 LCLAQRGLADRVAKEPQ--EFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATN 324 Query: 266 KQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 ++ + ++ F+ + + E EI + + + K+VR ++L + R+DGR +RD Sbjct: 325 GYLEQVMDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRD 384 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 + +V L+ R HGSSLF RG+TQ + V TL + EQ +DSL+ T ++ HYNF P + Sbjct: 385 LGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYS 444 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 TGE R+G+P RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S Sbjct: 445 TGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 504 Query: 445 SLALMDAGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 +L+L +AGVP+ PVAGIAMGLV D + ++ L+DI G ED G MDFKVAGT I Sbjct: 505 TLSLYNAGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFI 564 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+Q+D K+ GI ++ AL QA+ RL IL+ M++V+ ++ +F PR+ + +P Sbjct: 565 TALQLDTKLDGIPSKVLADALAQARDARLTILDTMAEVIDIPD-EMSQFAPRITSVKVPV 623 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618 +I VIG GK I I E+TGA+V+I++DGTV I+++S +AA E I +I + +P+ Sbjct: 624 SKIGEVIGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPK 683 Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDF 677 V + + G VVK FGAFV RDGLVHIS+L +RV K DVV GD + V++LD Sbjct: 684 VGERFLGSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDI 743 Query: 678 DDRGKIKLSM 687 D+RGKI L + Sbjct: 744 DNRGKISLGL 753 >gi|323191874|gb|EFZ77122.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 499 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 240/486 (49%), Positives = 331/486 (68%), Gaps = 10/486 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P +FPY Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSDI G Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493 Query: 482 DEDHLG 487 DEDHLG Sbjct: 494 DEDHLG 499 >gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] Length = 719 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 279/705 (39%), Positives = 421/705 (59%), Gaps = 82/705 (11%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE G + ++A+Q+ GAVL G++VVLA V + + +DF PLTV Y E+ Y Sbjct: 5 IEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEKAY 63 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V Sbjct: 64 AAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQV 123 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +S+ AAS AL LS +P + PV G ++ I ++VLNP +E + S LDL+V+G +D +LM Sbjct: 124 MSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDELLM 183 Query: 188 VELEA---------------------------NQLSEDVVLDA-------IIFGHNECKP 213 +E+ A N+LSED +L+A I+ G N + Sbjct: 184 IEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAYEE 243 Query: 214 VIEAISKLAKMCAKEPI-------VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266 K + + K+ I I++ ++ + ++QM K + R Sbjct: 244 AFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIIQAINQMAKSE------------RAS 291 Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 +++ + +K++++ S+ + W+E I++ ++ K+VR+ +L+ K R DGR+ VR I+ Sbjct: 292 ELNKIAEKILNFESA--TKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIA 349 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLP 382 + +L HGS LF RG TQA+VV TLG+ D Q VD L T++N FM++YNF Sbjct: 350 IETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVL--TEKNPINERFMVNYNFPG 407 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 + GE S + AP RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVC Sbjct: 408 FSVGEASPIKAPGRRELGHGNLAKRALYPSIDEN--YPYIIRLVSEILESNGSSSMATVC 465 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502 G SLAL AGVP K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+ GITA Sbjct: 466 GGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITA 525 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +QMD+K+GGI + I+ AL QAK GR+HILN M + L E + E P++E+ + P + Sbjct: 526 LQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSK 584 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621 I ++IG GK I+ I+E+ G +++D + G VKIA + +I+AA++ I +IT + NK Sbjct: 585 IVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNK 644 Query: 622 I---------------YKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++G+V K+ +FGAF+ DGL+H S+ Sbjct: 645 KGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGIDGLLHNSK 689 >gi|317125320|ref|YP_004099432.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Intrasporangium calvum DSM 43043] gi|315589408|gb|ADU48705.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Intrasporangium calvum DSM 43043] Length = 747 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 286/711 (40%), Positives = 421/711 (59%), Gaps = 41/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E T++++T ++ KD DFFPLTV+ +ER YA Sbjct: 18 FGTRKVRFETGRLAKQAGGAVVAYLDEDTMIMSTTSAGKTPKDQFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 +GKIPG + RRE RPT + IL R+IDR +RP F K +NE QVII+V + + V+ Sbjct: 78 IGKIPGSFFRREGRPTTDAILTCRLIDRPLRPTFKKGLRNEVQVIISVFALNPDHQYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184 ++ AASA+ +SGLPF GPV G +V I+GQ+V P D ++ D+ V+G A Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVSLIDGQWVAFPNFSDIERSVFDMVVAGRVVGDDVA 197 Query: 185 VLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------KMCAK 227 ++MVE E+ + D+V + + G K I+ + + K + Sbjct: 198 IMMVEAESTDSTWDLVKNEGKQAPTEEVVAEGLESSKKFIKVLCEAQAELAARAAKPVEE 257 Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 P+ +D +D F+ +E +S D + I K R ++D++K + + + + Sbjct: 258 FPVFLDYEDDVFAAVESAVSA----DTAAALTIAGKTEREDRLDEIKAAVKAQLAGQFEG 313 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E EI + F +Q K+VR +L KVR+DGR +R + A+V +L R HGS++F RG+ Sbjct: 314 -REKEISAAFRSVQKKLVRQRILRDKVRIDGRGLADIRALGAEVEVLPRVHGSAIFERGE 372 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL + EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 373 TQIMGVTTLNMLKMEQQLDTLSPQTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMG Sbjct: 433 ERALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMG 492 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ AL Sbjct: 493 LVSDEVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPATVLAGAL 552 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 QA+ RLHIL+ M++ + ++ + PR+ + +P D+I VIG GK+I I + T Sbjct: 553 TQARDARLHILDVMAEAIDVPD-EMSPYAPRIITVKVPVDKIGEVIGPKGKMINQIQDDT 611 Query: 582 GAKVNIDDDGTVKIAS--SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGTV I + AE A + +PEV + + G VVK FGAFV Sbjct: 612 GADISIEDDGTVFIGAVDGPSAEAARAAINAIANPTMPEVGERFLGTVVKTTTFGAFVSL 671 Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS++ +R+ DVVK G + V+L + D RGK+ L+ Sbjct: 672 LPGKDGLLHISEVRKLVGGKRIDNVDDVVKIGQKIQVELKEIDPRGKLSLA 722 >gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20] gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20] Length = 738 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 279/705 (39%), Positives = 421/705 (59%), Gaps = 82/705 (11%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE G + ++A+Q+ GAVL G++VVLA V + + +DF PLTV Y E+ Y Sbjct: 24 IEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEKAY 82 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V Sbjct: 83 AAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQV 142 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187 +S+ AAS AL LS +P + PV G ++ I ++VLNP +E + S LDL+V+G +D +LM Sbjct: 143 MSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDELLM 202 Query: 188 VELEA---------------------------NQLSEDVVLDA-------IIFGHNECKP 213 +E+ A N+LSED +L+A I+ G N + Sbjct: 203 IEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAYEE 262 Query: 214 VIEAISKLAKMCAKEPI-------VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266 K + + K+ I I++ ++ + ++QM K + R Sbjct: 263 AFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIVQAINQMAKSE------------RAS 310 Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 +++ + +K++++ S+ + W+E I++ ++ K+VR+ +L+ K R DGR+ VR I+ Sbjct: 311 ELNKIAEKILNFESA--TKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIA 368 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLP 382 + +L HGS LF RG TQA+VV TLG+ D Q VD L T++N FM++YNF Sbjct: 369 IETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVL--TEKNPINERFMVNYNFPG 426 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 + GE S + AP RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVC Sbjct: 427 FSVGEASPIKAPGRRELGHGNLAKRALYPSIDEN--YPYIIRLVSEILESNGSSSMATVC 484 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502 G SLAL AGVP K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+ GITA Sbjct: 485 GGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITA 544 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +QMD+K+GGI + I+ AL QAK GR+HILN M + L E + E P++E+ + P + Sbjct: 545 LQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSK 603 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621 I ++IG GK I+ I+E+ G +++D + G VKIA + +I+AA++ I +IT + NK Sbjct: 604 IVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNK 663 Query: 622 I---------------YKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++G+V K+ +FGAF+ DGL+H S+ Sbjct: 664 KGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGIDGLLHNSK 708 >gi|15827380|ref|NP_301643.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae TN] gi|221229857|ref|YP_002503273.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae Br4923] gi|81537101|sp|Q9CCF8|PNP_MYCLE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782731|sp|B8ZQJ6|PNP_MYCLB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13092930|emb|CAC31235.1| putative polyribonucleotide phosphorylase / guanosine pentaphosphate synthetase [Mycobacterium leprae] gi|219932964|emb|CAR70949.1| putative polyribonucleotide phosphorylase / guanosine pentaphosphate synthetase [Mycobacterium leprae Br4923] Length = 773 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 281/720 (39%), Positives = 422/720 (58%), Gaps = 47/720 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPNDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183 ++ AASA+ L GLPF GP+ G +V I+G +V P +++ ++ D+ ++G T D Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAGRIVGTDDE 201 Query: 184 -----AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI------------ 218 A++MVE EA + ++V ++I+ G KP I A+ Sbjct: 202 GKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVS 261 Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 S+ AK + P D D + ++ M ++L + I K R ++ +++K +++ Sbjct: 262 SRQAKPPVEYPTFPDYGD--DVYYSVASMATDELAAALTIGAKLERDQRTNEIKTQVLER 319 Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 + + E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS Sbjct: 320 LAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVVPRAHGS 378 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RRE Sbjct: 379 ALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRRE 438 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ P Sbjct: 439 IGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAP 498 Query: 459 VAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 VAGIAMGLV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ Sbjct: 499 VAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLD 558 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL QAK RL IL M++ + ++ + PRV + +P D+I VIG Sbjct: 559 GIPSQVLAGALAQAKDARLTILEVMAEAIDRPD-EMSPYAPRVITIKVPVDKIGEVIGPK 617 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GKVI I E+TGA+++I+DDGTV + ++ +AA I +I + +P V + + G VV Sbjct: 618 GKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGERFLGTVV 677 Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 K+ +FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D + RGKI L + Sbjct: 678 KITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRGKISLVL 737 >gi|2342619|emb|CAB11392.1| guanosine pentaphosphate synthetase/ polyribonucleotide nucleotidyltransferase [Mycobacterium leprae] Length = 777 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 281/720 (39%), Positives = 422/720 (58%), Gaps = 47/720 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A Q+ GAV+A + ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 26 FGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYA 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 86 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPNDLYDVL 145 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183 ++ AASA+ L GLPF GP+ G +V I+G +V P +++ ++ D+ ++G T D Sbjct: 146 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAGRIVGTDDE 205 Query: 184 -----AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI------------ 218 A++MVE EA + ++V ++I+ G KP I A+ Sbjct: 206 GKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVS 265 Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 S+ AK + P D D + ++ M ++L + I K R ++ +++K +++ Sbjct: 266 SRQAKPPVEYPTFPDYGD--DVYYSVASMATDELAAALTIGAKLERDQRTNEIKTQVLER 323 Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 + + E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS Sbjct: 324 LAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVVPRAHGS 382 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RRE Sbjct: 383 ALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRRE 442 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ P Sbjct: 443 IGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAP 502 Query: 459 VAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 VAGIAMGLV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ Sbjct: 503 VAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLD 562 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL QAK RL IL M++ + ++ + PRV + +P D+I VIG Sbjct: 563 GIPSQVLAGALAQAKDARLTILEVMAEAIDRPD-EMSPYAPRVITIKVPVDKIGEVIGPK 621 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GKVI I E+TGA+++I+DDGTV + ++ +AA I +I + +P V + + G VV Sbjct: 622 GKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGERFLGTVV 681 Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 K+ +FGAFV RDGLVHIS+L +R+AK DVV GD + V++ D + RGKI L + Sbjct: 682 KITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRGKISLVL 741 >gi|328885433|emb|CCA58672.1| Polyribonucleotide nucleotidyltransferase [Streptomyces venezuelae ATCC 10712] Length = 739 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/718 (39%), Positives = 423/718 (58%), Gaps = 45/718 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ +L R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ +L+GLPF GP+ +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + E + + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ +D +D + E ++ +K DL + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYQD--DVLEALTAAVKGDLAKALTIAGKQERETELDRIKELAAEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ + D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISEEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L + D Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAIGSKVQVEIAEIDQRGKLSLIPVIAD 726 >gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter irgensii 23-P] gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter irgensii 23-P] Length = 746 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/692 (39%), Positives = 426/692 (61%), Gaps = 17/692 (2%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD F PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKD-LGFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYTAETQVMIQLMSHDEDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V ING++++NP R + +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQLAESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249 +++SE+ + DAI F H K A +LA+ K+ + +++ +LE+ + M Sbjct: 194 MDEISEEEMADAIKFAHEAIKVQCAAQIRLAEAFGKKEVREYEKAREDKELEKRVHDMAY 253 Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + ++ K+ R ++K + + F+ E + G + + + +R + L Sbjct: 254 DKVYAIAEAGSSKHERTAAFKEIKTAIKATFTEEELADYGGLVSDYYRKAEKAAIRDLTL 313 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 + +R+DGR ++ +R I ++V L HGS++F RG+TQA+ VTLGT D +D S Sbjct: 314 NVGLRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSF 373 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 +F +HYNF P TGE + SRRE+GHG LA+R + ++P PYT+R+VSE Sbjct: 374 EGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPTDC--PYTVRVVSE 431 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDHL 486 + ES+GSSSMATVC ++ALMDAGV + +PV+GIAMGL+ D + + +LSDI GDEDHL Sbjct: 432 VLESNGSSSMATVCAGTMALMDAGVQMIRPVSGIAMGLISDAESGKYAVLSDILGDEDHL 491 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKV GT GITA QMD+K+ G+ I+V AL+QA+ GRLHIL ++++ +S + +++ Sbjct: 492 GDMDFKVTGTSEGITACQMDIKVKGLGYEILVNALKQAREGRLHILGKITETISTANVEV 551 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601 E+ P++ IP + I IG GGK I+ + ++TG + I +D G ++I + Sbjct: 552 KEYAPKMINRRIPNELIGAFIGPGGKHIQELQKETGTTIVITEDAVTEEGIIEILGTDPE 611 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659 IE I S+ PEV Y+ +V+K++DFGA V + A + L+H+S+L+ ER Sbjct: 612 GIEKVIARIESMLFKPEVGSAYEVKVIKILDFGAVVEYVEAPGNEVLLHVSELAWERTDN 671 Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDVVK GD + VK D R K K+S K + Sbjct: 672 VSDVVKMGDILDVKYFGLDPRTRKEKVSRKAL 703 >gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis MED134] gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis MED134] Length = 742 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/695 (39%), Positives = 431/695 (62%), Gaps = 23/695 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD DF PLTV+Y+E+ A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKD-VDFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y +ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V +NG++++NP R ++ +D+ + + ++V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGASAESVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQ 246 +++SE+ + DAI F H K EA +LA+ ++ P + +D K +M+ Sbjct: 194 MDEISEEEMADAIKFAHEHIKVQCEAQMRLAEAVGRKEVREYPAEREDEDLKKKVHDMA- 252 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRT 305 + ++ K R +K+++ + FS E + G++VS + + +R Sbjct: 253 -YDKVYAIAKAGSSKKERGMAFSQIKEEIKATFSEEELE-DFGDLVSKYYRSAEKAAIRD 310 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 + L++ +R+DGR + +R I + L HGS++F RG+TQA+ VTLGT D +D Sbjct: 311 LTLNEGLRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTSRDANQIDM 370 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 S F +HYNF P TGE + SRRE+GHG LA+R + ++P PYT+R+ Sbjct: 371 PSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMVPDDC--PYTVRV 428 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483 VSE+ ES+GSSSMATVC ++A+MDAG+ ++KPV+GIAMGL+ D + + +LSDI GDE Sbjct: 429 VSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAVLSDILGDE 488 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 DHLG MDFKV GT+ GITA QMD+K+ G+S I+V ALQQA+ GRLHIL +++ ++ R Sbjct: 489 DHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALQQARAGRLHILEKLTDTIAAPR 548 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASS 598 + ++ P++ + I + I +IG GGKVI+ + ++TG + I++D G V+I + Sbjct: 549 EDVKDYAPKMVGVRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGVVEILGT 608 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTER 656 A I+A I SIT P V YK +V+K++DFGA V + A + L+H+S+++ ER Sbjct: 609 GQAGIDAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLHVSEIAWER 668 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 SDV+ G+ + VK D R K K+S K + Sbjct: 669 TENASDVLSMGEELDVKYFGIDKRTRKEKVSRKAL 703 >gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas reinhardtii] Length = 854 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/712 (39%), Positives = 429/712 (60%), Gaps = 32/712 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ +KLETG I RQ++GA++AT GET++ AT S F PLTVNY ER A G+ Sbjct: 94 GKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAGR 153 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++ V+ +D + P +++ Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213 Query: 133 AASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 AA+AAL++S +P + V G +V +G +++NP ++E + S LDL V+GT+DAVLM+E Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIEG 273 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMI 248 + L+E+ +++A+ G + + + AK K P D+ +LE + +++ Sbjct: 274 FCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGK-PKRTDAVVTVPEELESRLMELV 332 Query: 249 KEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------------- 293 + L + K VR + + + + + ++E + + E V Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392 Query: 294 ----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 E ++++V+R ++LD++VR DGR +R ++ + GLL RTHGS+LF RG+TQ+I Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452 Query: 350 VVVTLGTREDEQYVDSLSGTQRND-----FMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 V TLG+ D D++ D F + Y+F P + GE R GAP RRE+GHG L Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ P+LP AQFPYT+R+ S ITES+GSSSMA+VCG LA+MDAGVPI++PVAGIAM Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572 Query: 465 GLVKDGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 GL+ + + +LSDI G ED LG MDFKVAG ITA QMD+K+ GI+ +IM ALQQ Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 AK GR HIL++M+K L PR+ + I PD+ VIG GG+VI+ I + +GA Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692 Query: 584 -KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCG 641 ++ID+ G V + + S A E ++ + PE I++ + V + FG FV C Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 R GLVH+S+L + VVK GD + V ++ D GK+ LS K V ++ Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQRH 804 >gi|311744161|ref|ZP_07717966.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum DSM 15272] gi|311312516|gb|EFQ82428.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum DSM 15272] Length = 753 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/724 (40%), Positives = 432/724 (59%), Gaps = 46/724 (6%) Query: 4 VHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFF 57 +HTVE + R ++ ETG +A+Q+ G+V A + T++L+ R K+ DFF Sbjct: 17 LHTVETVIDNGRFGTRTVRFETGVLAQQAAGSVSAYLDDDTMLLSATTAGRHPKEFLDFF 76 Query: 58 PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117 PLT++ +ER YA G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+INV Sbjct: 77 PLTIDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFKKGLRNEVQVVINV 136 Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176 M + ++ V+++ AASA+ +SGLPF GPV +V I+GQ+V P + ++ D+ Sbjct: 137 MALNPDTPYDVLAINAASASTQISGLPFTGPVGATRVALIDGQWVAFPSHSQLEEAVFDM 196 Query: 177 FVSG---------TQDAVLMVELEANQLSEDVV-------LDAIIFGHNECKPV-----I 215 V+G + A++MVE E+ + + D+V + ++ G E V Sbjct: 197 VVAGRIAAQADGSSDVAIMMVEAESTEATWDLVQSGVQAPTEEVVAGGLEAAKVAIRQMC 256 Query: 216 EAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL 271 EA S+LA AK PI +D +D + + ++++ DL + I K R ++ ++ Sbjct: 257 EAQSELAAAAAKPVKDFPIFLDYEDDAF--DAVAEVASGDLAQALTILHKADREERESEI 314 Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331 K +V E E E+ + + +VR +L KVR+DGR +R++SA+V + Sbjct: 315 KANVVEQLG-ERFEGREKELGAALRSLTKSLVRDRVLRDKVRIDGRGLADIRELSAEVSV 373 Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391 + R HGS+LF RG+TQ + V TL + EQ +D+LS + +M +YNF P +TGE R+ Sbjct: 374 IPRVHGSALFQRGETQILGVTTLNMLDLEQKLDTLSPETKRRYMHNYNFPPFSTGETGRV 433 Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451 G+P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L L++A Sbjct: 434 GSPKRREIGHGALAGRALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLGLLNA 493 Query: 452 GVPISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 GVP+ PVAGIAMGL+ DG +++ L+DI G ED G MDFKVAGT ITA+Q+D Sbjct: 494 GVPLRAPVAGIAMGLISGEVDGRTEYVTLTDILGAEDAFGDMDFKVAGTPEFITALQLDT 553 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI +++ AL QAK RL IL+ M++ + E ++ + PR+ + IP D+I VI Sbjct: 554 KLDGIPADVLAGALNQAKGARLTILDVMAQAIDEPD-EMSPYAPRIITIKIPVDKIGEVI 612 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS--LAEIEAAREMIRSITDVPEVNKIYKG 625 G GKVI + + TGAK++IDDDGTV + + + AE A + +PEV + Y G Sbjct: 613 GPKGKVINQLQDDTGAKISIDDDGTVYVGADNGDAAEAARAAINAIANPTMPEVGERYLG 672 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRG 681 VVKV+DFGAF+ +DGL+HIS+L +RV DVV G + V++ + DRG Sbjct: 673 TVVKVVDFGAFISLSPGKDGLLHISKLRDLNGGQRVNNVEDVVSVGQKIQVEIAELGDRG 732 Query: 682 KIKL 685 KI L Sbjct: 733 KISL 736 >gi|108799067|ref|YP_639264.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. MCS] gi|119868182|ref|YP_938134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. KMS] gi|126434670|ref|YP_001070361.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. JLS] gi|123178942|sp|Q1BA76|PNP_MYCSS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610288|sp|A3PY93|PNP_MYCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610289|sp|A1UET6|PNP_MYCSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108769486|gb|ABG08208.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. MCS] gi|119694271|gb|ABL91344.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. KMS] gi|126234470|gb|ABN97870.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. JLS] Length = 759 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 289/710 (40%), Positives = 428/710 (60%), Gaps = 37/710 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ +S KD DFFPLT++ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKSPKDHFDFFPLTIDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D + VV Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFVSGLRNEIQVVVTVMSLDPKDLYDVV 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--A 184 ++ AASA+ ++GLPF GPV G +V I+G +V P +++ ++ D+ V+G T D A Sbjct: 142 AINAASASTQIAGLPFSGPVGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKTADDVA 201 Query: 185 VLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKLAKMCAKEPIVI 232 ++MVE EA ++V +A++ G KP I EA +LA AK Sbjct: 202 IMMVEAEATDKVVELVAGGAQAPTEAVVAEGLEAAKPFIKVLCEAQQELAGRAAKP--TA 259 Query: 233 DSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 D F + E++ + + + L + I K R + D++K +++ + + + E Sbjct: 260 DYPLFPEYGEDVYYAVASVATDALSEALTIAGKEERNNRTDEIKVEVLGRLADQFAG-RE 318 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 EI F + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+TQ Sbjct: 319 KEIGGAFRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAIVPRAHGSALFERGETQI 378 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA RA Sbjct: 379 LGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERA 438 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGLV Sbjct: 439 LMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVS 498 Query: 469 DGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ GI ++ A Sbjct: 499 DDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVLAGA 558 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QAK R+ IL M++ + ++ ++ + PR+ + +P D+I VIG GK+I I E+ Sbjct: 559 LAQAKDARITILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSITEE 617 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA ++I+DDGTV + +S+ +AA + I +I + +P++ + + G VVK DFGAFV Sbjct: 618 TGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKIGERFLGTVVKTTDFGAFVS 677 Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 RDGLVHIS+L +R+AK DV K GD + V++ D D+RGKI L + Sbjct: 678 LLPGRDGLVHISKLGRGKRIAKVEDVAKVGDKLRVEIADIDNRGKISLVL 727 >gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata HTCC2501] gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea biformata HTCC2501] Length = 750 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 274/687 (39%), Positives = 425/687 (61%), Gaps = 24/687 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G ++L TVV + D DF PLTV+Y+E+ +A G+ Sbjct: 15 GREISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASD-LDFLPLTVDYREKFHASGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP+ EIL+ R++DR +RPLF K Y ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE P+ +V ++G++++NP R + +D+ V ++D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQLESSDIDMIVGASEDSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251 +++SE+ + +AI F H K I A ++LA ++ + + + E + + I++ Sbjct: 194 MDEISEEDMTEAIKFAHEAVKVQIAAQNRLADKAGRK--EVREYEIEEENEAVEKKIRDI 251 Query: 252 LRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 + K KQ +LK+++++ FS E I + ++ + VR + Sbjct: 252 AYDKAYAIAKAGSAKQERSAAFSELKEEVLAAFSEEEQEELGDLIKKYYYKVEKEAVRNL 311 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-- 364 LD+++R+DGR ++ +R I +V L THGS++F RG+TQA+ VTLGT + +D Sbjct: 312 TLDEQIRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANIIDMP 371 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S G +R F +HYNF P +TGE + SRREIGHG LA+RA+ +P+ PYT+R Sbjct: 372 SFEGEER--FYLHYNFPPFSTGEARPIRGTSRREIGHGNLAQRALSRQVPEDC--PYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482 +VSE+ ES+GSSSMATVC ++ALMDAGV + KPV+GIAMGL+ D + + +LSDI GD Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMGLISDPESGKYAVLSDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKV GT GITA QMD+KI G+S I++ AL+QA+ GRLHIL++++ ++ Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILIKALKQARDGRLHILSKLTDTIAAP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 + P++ IP + I VIG GG+VI+ + ++TG + I++D G V+I Sbjct: 548 AEDVKPHAPKMVTRIIPNEYIGAVIGKGGEVIQELQKETGTTIVINEDPATGEGIVEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 + I+ I SI PE +Y+ +V+K++DFGA V + A + L+H+S+L+ E Sbjct: 608 TDQGGIDKVLAKIDSIMFTPEEGSVYEVKVIKMLDFGAVVEYLDAPGNEILLHVSELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGK 682 R DV+ GD VK + D R + Sbjct: 668 RTENVEDVLSMGDVFDVKYMGIDPRTR 694 >gi|237785717|ref|YP_002906422.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium kroppenstedtii DSM 44385] gi|257096678|sp|C4LJ74|PNP_CORK4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|237758629|gb|ACR17879.1| polyribonucleotide nucleotidyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 775 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/750 (38%), Positives = 429/750 (57%), Gaps = 73/750 (9%) Query: 2 FDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQD 55 F H+VE ++ R ++LETG++ARQ++G+V+A E T++L+T ++G D Sbjct: 28 FGTHSVEATIDNGDFGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFD 87 Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 FFPLTV+ +ER YA G+IPG + RRE RP + IL R+IDR +RP F K +NE QVI+ Sbjct: 88 FFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIV 147 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDE 169 VM D + VV++ AASA+ LSGLP GPV G ++ D+ +GQ+V P ++ Sbjct: 148 TVMSLDPKDMYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQ 207 Query: 170 DQGSL-DLFVSGT---------------------------QDAVLMVELEANQLSEDVVL 201 + +L ++ V+G A++MVE A + + V Sbjct: 208 HESALFEMVVAGRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVN 267 Query: 202 DA--------IIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----------SKLEE 242 D + G KP I + A+ ++ + ++++F + ++ Sbjct: 268 DGAPAPTESVVAEGIEAAKPFIAELCG-AQQALRQAVDPETEEFPLFPPYGADVLAAVDS 326 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 E I + + ++ +DD + ++ F E EI + + +V Sbjct: 327 EAKGRISDIMSIADKQERDEALSSDMDDTVEALLEEFPE-----REAEIRAAHNAVTKEV 381 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ +L R+DGR E +RD+ +V L+ R HGSSLF RG+TQ + V TL T + EQ Sbjct: 382 VRSRILADGFRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQ 441 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 VDSL ++ HYNF P +TGE R+G+P RREIGHG LA RA+ P++P FPYT Sbjct: 442 VDSLGPVDHRRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYT 501 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL----VKDGDDFIILSD 478 +R VSE S+GS+SM +VC S+L+L +AGVP+ PVAGIAMGL VK ++ L+D Sbjct: 502 IRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTD 561 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED G MDFKVAGT+ ITA+Q+D K+ GI +++ AL+QA+ RL ILN M++V Sbjct: 562 ILGAEDAFGDMDFKVAGTEDFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEV 621 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + E + ++ PR+ +++P +I VIG GK I I E TGA+V+I+DDGTV I+++ Sbjct: 622 IDEPD-PMSDYAPRITTISVPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISAT 680 Query: 599 SLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STE 655 S EAA + I I + +P+V + + G VVK FGAFV RDGLVHIS+L + Sbjct: 681 SGGSAEAAVDRINEIANPQLPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKK 740 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 R+ K DVV GD + V++ D D+RGKI L Sbjct: 741 RIEKVEDVVNVGDKLEVEIADIDNRGKISL 770 >gi|297626619|ref|YP_003688382.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (Guanosine pentaphosphate synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922384|emb|CBL56956.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (Guanosine pentaphosphate synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 736 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 279/714 (39%), Positives = 428/714 (59%), Gaps = 41/714 (5%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ ETG +A+Q+DGA A Y G++++L+T + ++ DFFPLTV+ +E+ YAVG+I Sbjct: 23 MRFETGLLAQQADGAA-AVYLDGDSMLLSTTTAQKKPREAIDFFPLTVDVEEKMYAVGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+EN IL R+IDR +RP F K +NE QV++ V+ + + +V+M A Sbjct: 82 PGSFFRREGRPSENAILTCRLIDRPLRPAFKKGLRNEVQVVVTVLALNPQVEYDMVAMNA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QDAVLM 187 AS + +SGLPF GP+ ++ I Q+V P +D+++ + + V+G A++M Sbjct: 142 ASMSTQISGLPFSGPIGAVRISLIGDQWVCLPTVDQEKDATFSMVVAGRVLPDGDIAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSK 235 VE + + ++V + + G + KP I +A ++LA KE D Sbjct: 202 VEAGGTEATWELVKGGRTAPTEEVVAAGLDAAKPFIKVLCDAQAELAAQVNKE--TYDFP 259 Query: 236 DFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE 290 F + E+++ +KE L + K R + DLK ++V E EGE Sbjct: 260 VFKEYEDDVWDRVKELGYDKLDKIEQVAAKLDRQEAESDLKHEIVGQMVGEEDFEGREGE 319 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I F+ ++ K+VR +L K VR+DGR + +R +S++VG++ R HGS LF RG+TQ + Sbjct: 320 IAGAFKALEKKIVRDRVLSKGVRIDGRGPKDIRALSSEVGVVPRVHGSGLFQRGETQVLG 379 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 + TL + EQ +D+LS +M Y P +TGE R+G+P RRE+GHG LA RAI Sbjct: 380 ITTLNMLDMEQKLDTLSSVHTKRYMHQYEMPPYSTGETGRVGSPKRREVGHGALASRAIV 439 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+ + Sbjct: 440 PVLPTREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLMSET 499 Query: 471 DD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL QA+ Sbjct: 500 DESGKTSYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLNGIPADVLAAALLQAR 559 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 R IL+ + + +S ++ + PR+ + IP D+I VIG GKVI I + TGA + Sbjct: 560 DARHAILDVIHDAI-DSPDEMSPYAPRIITVHIPTDKIGEVIGPKGKVINQIQDDTGANI 618 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 +I++DGT+ + + + EAAR MI +I + +PE + Y G VVK+ FGAF+ + Sbjct: 619 SIEEDGTIYVGADNGDAAEAARTMINAIANPTMPERGERYLGTVVKLTSFGAFISLLPGK 678 Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 DGL+HIS+L +RV DV+ G + V++ D DDRGK+ L + V+D++ Sbjct: 679 DGLLHISKLRALNDGKRVENVEDVLSVGQKLQVEISDIDDRGKLSL-VPVLDED 731 >gi|283458493|ref|YP_003363120.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa DY-18] gi|283134535|dbj|BAI65300.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa DY-18] Length = 739 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 293/713 (41%), Positives = 426/713 (59%), Gaps = 43/713 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+A+Q++G+VL T ET +L+ V +S +DG DFFPLTV+ +ER YA GK Sbjct: 21 RHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRDGFDFFPLTVDVEERMYAAGK 80 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP Y RRE RP+ IL +R+IDR +RP F+K +NE QV++ V+ ++ + + ++ Sbjct: 81 IPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYNPDEIYNTFAIN 140 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183 AASA+ LSG PF GP+ G ++ I+GQ+V P+ + + D+ V+G T+D Sbjct: 141 AASASTTLSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGTED 200 Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229 A++MVE EA S ++ + + G KP I A+ K LA K Sbjct: 201 VAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKPFIAALCKAQADLASRAGKP- 259 Query: 230 IVIDSKDFSKLEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 ++ F E++ +KE D V + I K R +L+++++ + E Sbjct: 260 -ALELPFFGGHGEDVDAAVKEFAADRLVEVYSIAGKQEREAAAAELQEELMEALTGEGKE 318 Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E E+ F + VVR +L ++VR+DGR +R ++A+V +L R HGS+LF R Sbjct: 319 FEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGSALFER 378 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + + TL + EQ +DSL + ++ HYNF P +TGE R+G+P RREIGHG Sbjct: 379 GETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 438 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIA Sbjct: 439 LAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 498 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 499 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 558 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ RLHIL + + ++ ++ EF PR+ + IP +I VIG GK+I I E Sbjct: 559 ALTQAREARLHILEVLVSAI-DAPDEMSEFAPRIISVKIPVAKIGEVIGPKGKMINQIQE 617 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I ++ EAAR + +I + VPEV + Y G VVKV DFGAF+ Sbjct: 618 DTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTDFGAFI 677 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS++ +RV DVV G V V++ DDRGK+ L+ Sbjct: 678 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLA 730 >gi|302558058|ref|ZP_07310400.1| polyribonucleotide nucleotidyltransferase [Streptomyces griseoflavus Tu4000] gi|302475676|gb|EFL38769.1| polyribonucleotide nucleotidyltransferase [Streptomyces griseoflavus Tu4000] Length = 747 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/708 (40%), Positives = 418/708 (59%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227 A++MVE EA + + E + + G KP I+ + + K + Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI +D +D + E ++ +K +L + I K R ++D +K E Sbjct: 257 FPIFLDYQD--DVLEALAGAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493 Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E TGA Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGHKVQVEIAEIDSRGKLSL 720 >gi|288925349|ref|ZP_06419283.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17] gi|288337820|gb|EFC76172.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17] Length = 746 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 276/677 (40%), Positives = 409/677 (60%), Gaps = 28/677 (4%) Query: 36 GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95 G TV+LATV + G DF PL V+Y+E+ A G+ PGG+ +RE + ++EIL SR++ Sbjct: 2 GNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRFPGGFTKREGKANDDEILTSRLV 61 Query: 96 DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155 DR++RPLF Y E V + ++ D P ++ AASAA+ S +PF+ P+ +V Sbjct: 62 DRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGFAASAAMACSDIPFDYPISEVRVA 121 Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214 + G+YV+NP + +DL V T+D ++MVE E ++SE ++ A+ KP+ Sbjct: 122 RVGGEYVINPTFQQMADADMDLMVGATKDNIMMVEGEMKEVSEQDLIGALKVAAEAIKPM 181 Query: 215 IEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF-----IPEKYVRCKQID 269 E +L+K + V D +EE+ + IK +L + EK+ R D Sbjct: 182 CELQEELSKELGTD--VKREYDHEVNDEELREQIKSELYQPVYDVNKQALEKHARQDAFD 239 Query: 270 DLKKKMVSYFSSEHSSWNEGEIVS-------VFEDIQAKVVRTVMLDKKVRMDGRDSETV 322 + + + + + H+ +E E+ ++D+ +R +LD+ +R+DGR + + Sbjct: 240 KILEDFLEKYDAAHTELSEDELDEKHAEAHRYYDDVMRDAMRRCILDEGLRLDGRATTEI 299 Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS--LSGTQRNDFMMHYNF 380 R I ++V L HGS+LF RG+T ++ TLGT+ DE+ VD + G QR F++HYNF Sbjct: 300 RPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGYQR--FLLHYNF 357 Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440 P +TGE RRE+GHG LA R + +P A FPYT+R+VS+I ES+GSSSMAT Sbjct: 358 PPFSTGEAKAQRGVGRREVGHGHLAWRGLKDQIP--ADFPYTVRLVSQILESNGSSSMAT 415 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGDEDHLGHMDFKVAGTDS 498 VC +LALMDAGVP+ KPV+GIAMGL+K+ D + ILSDI GDEDHLG MDFK GT Sbjct: 416 VCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILSDILGDEDHLGDMDFKTTGTKD 475 Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558 G+TA QMD+K G+S I+ AL QAK GR HILN+M + +SE R ++ PR+E I Sbjct: 476 GLTATQMDIKCDGLSFEILEKALMQAKAGREHILNKMMETISEPRAEMKPQVPRIEAFEI 535 Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSITD 615 P + I VIG GGK+I+ + E TGA + ID+ G V++++ + I+AA IRSI Sbjct: 536 PKEFIGAVIGPGGKIIQQMQEDTGATITIDETDGVGKVQVSAPNKDAIDAAIAKIRSIVA 595 Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKL 674 +PEV ++Y+G V +M +G FV +DGL+HIS++ +R+ + +KEGD + VKL Sbjct: 596 IPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDWKRLETVEEAGIKEGDKLKVKL 655 Query: 675 LDFDDR-GKIKLSMKVV 690 ++ D + GK KLS +V+ Sbjct: 656 MEIDPKTGKYKLSRRVL 672 >gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299] gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299] Length = 838 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 288/732 (39%), Positives = 426/732 (58%), Gaps = 60/732 (8%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + +ETGRI RQ++GAV+ T GETV+ AT+ R + F PLTVNYQER AVG+ G Sbjct: 63 VTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVNYQERYSAVGRTAG 122 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 GY +R+ ENE LI R++DR +RP+ K + +TQ++ V+ +D S +++ AAS Sbjct: 123 GYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDGARSTDALAITAAS 182 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQY--VLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192 A +S +P + P+ G +V + G+ ++NP ++ ++ LDL ++GT+DAV+M+E Sbjct: 183 CAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLAGTEDAVMMIEGFG 242 Query: 193 NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 + L+ +L AI GH N C+ I+A +K E V+ + + +++ + ++ Sbjct: 243 DFLTTQEMLYAIEKGHEAVANACRD-IDAWAKDVGRVKNEAAVLVAPE--GVDDAVRALV 299 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMV-------------------------------- 276 +L + I K R ++ ++ + + Sbjct: 300 GAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQSLRFAFCALLL 359 Query: 277 -SYFSSEHSSWN-----------EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 S F +++ E ++ ++ +R+++ VR DGRD++TVR Sbjct: 360 FSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQDGRDTKTVRP 419 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 I+ GLL RTHGSSLF RG+TQAI TLG D Q VD L + F +HY F P + Sbjct: 420 ITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRFYLHYFFPPSS 479 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 GE R+GA SRRE+GHG LA RA+ PV+P FP+T+R+ S ITES+GSSSMATVC Sbjct: 480 VGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNGSSSMATVCAG 539 Query: 445 SLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 SLAL DAGVPI++ VAGIAMGL+ G+ +IL+DI G ED LG MDFKVAG GI Sbjct: 540 SLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMDFKVAGDGDGI 599 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 +A QMD+K+ GI+ ++ AL+ A+ G +HIL EM K ++ + P+VE++ +P Sbjct: 600 SAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYAPQVEVVEVPT 659 Query: 561 DQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619 I VIG GG+ I+ I EQT ++I+++G V + S ++ A E+IRS+T PEV Sbjct: 660 KYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEIIRSLTVEPEV 719 Query: 620 NKIYK-GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 K Y+ +V KV+DFGAFV +GL H+S+L RVA DVV+EG T+ VKLL+ + Sbjct: 720 GKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQTIDVKLLETN 779 Query: 679 DRGKIKLSMKVV 690 +RG+ KLS + V Sbjct: 780 ERGQFKLSRRAV 791 >gi|296139452|ref|YP_003646695.1| polyribonucleotide nucleotidyltransferase [Tsukamurella paurometabola DSM 20162] gi|296027586|gb|ADG78356.1| polyribonucleotide nucleotidyltransferase [Tsukamurella paurometabola DSM 20162] Length = 750 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 283/711 (39%), Positives = 421/711 (59%), Gaps = 42/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR A+Q+ G+V A ET++L+ + + K+ DFFPLTV+ +ER YA Sbjct: 25 FGTRTIRFETGRFAQQAAGSVAAYLDDETMLLSATSHSKHPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ ++GLPF GPV G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRIVSGSGK 204 Query: 181 -TQDAVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKLAKMCAK 227 A++MVE EA + +++ +A++ G KP I EA +LA AK Sbjct: 205 DADVAIMMVEAEATENVIELIAGGATAPTEAVVAEGLEAAKPFIAVLCEAQKQLAAGAAK 264 Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 P+ +D F+ +E + + + L ++ K R D +K +++ Sbjct: 265 PTGEFPLFPAYQDDVFAAVEAAGAAKLNDALSIAG----KQERDNATDVVKAEVLEAVGP 320 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 + EGEI + F + K+VR +L R+DGR +R +SA++ ++ R HGS+LF Sbjct: 321 QFEG-REGEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEIAVIPRAHGSALF 379 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL + Q +DSL + +M HYNF P +TGE R+G+P RREIGH Sbjct: 380 ERGETQILGVTTLDMVKMAQQIDSLGPEKSKRYMHHYNFPPYSTGETGRVGSPKRREIGH 439 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAG Sbjct: 440 GALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 499 Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 500 IAMGLVSDEVDGQARYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSQVL 559 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QAK R IL M++ + ++ ++ + PR+ + +P D+I VIG GK I I Sbjct: 560 AGALGQAKDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGKTINSI 618 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E+TGA ++I+DDGTV + ++ +AA + I +I + +P+V + + G VVK FGA Sbjct: 619 TEETGANISIEDDGTVFVGAADGPSAQAAIDRINAIANPQLPKVGERFLGTVVKTTAFGA 678 Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FV RDGLVHIS+L +RV K DVV G + V++ D D+RGKI L Sbjct: 679 FVSLVPGRDGLVHISKLGNGKRVNKVEDVVNVGSKLQVEIADIDERGKISL 729 >gi|311113230|ref|YP_003984452.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC 17931] gi|310944724|gb|ADP41018.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC 17931] Length = 753 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 287/713 (40%), Positives = 420/713 (58%), Gaps = 43/713 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+A+Q+ G+VL T ET +L+ +S ++G DFFPLTV+ +ER YA GK Sbjct: 35 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE RP IL +R+IDR +RP F+K +NE QV++ V+ + + + ++ Sbjct: 95 IPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFAIN 154 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183 AASA+ LSG PF GP+ G ++ I+GQ+V P+ + + D+ V+G ++D Sbjct: 155 AASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGSED 214 Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229 A++MVE EA S ++ + + G KP I A+ K L + K Sbjct: 215 VAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGKPD 274 Query: 230 IVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 + + F E++ +K E L I K R +L+ +++ + E Sbjct: 275 LELPY--FGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332 Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E E+ F + VR +L ++VR+DGR +R ++A+V +L R HGS++F R Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSL ++ HYNF P +TGE R+G+P RREIGHG Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIA Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 513 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ RLHIL+ ++ + ++ ++ EF PR+ + +P +I VIG GK+I I E Sbjct: 573 ALTQAREARLHILDVLTAAI-DAPDEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I ++ EAAR I +I + VPEV + Y G VVKV DFGAF+ Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS++ +RV DVV G V V++ DDRGK+ LS Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744 >gi|71901372|ref|ZP_00683466.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] gi|71728871|gb|EAO31008.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] Length = 469 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 238/452 (52%), Positives = 318/452 (70%), Gaps = 2/452 (0%) Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301 + ++I L + I EK R I +K ++ + E WN E++ F +++ + Sbjct: 14 LKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 73 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +LD KVR+DGR E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT D Q Sbjct: 74 TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 133 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+++G + +F+ HYNF P + GE R G RREIGHGRLARR + V+P +FPY Sbjct: 134 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFPY 193 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ PVAGIAMGLVK+G+ F++LSDI G Sbjct: 194 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 253 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 DEDHLG MDFKVAGT G++A+QMD+KI GI+E IM ALQQAK GRLHIL EM K L+ Sbjct: 254 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 313 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 R +L ++ PR+ + I PD+IR+VIG GG I+ I + TG +++I DDGT+ IAS + A Sbjct: 314 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNNA 373 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 A+ I IT E +IY+G+V K+MDFGAFV +DGLVH+SQ+S+ERV + Sbjct: 374 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 433 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D +KEGD V VK+L+ D +G+I+LS+K V++ Sbjct: 434 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 465 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 26/208 (12%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER------- 66 RP+ ++ G + R G+ L T GET + + +DGQ +T Y+E Sbjct: 95 RPITVKVGVLPR-VHGSGLFTRGETQAIVVTTLG-TARDGQVIDAVTGEYKENFLFHYNF 152 Query: 67 -TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES- 124 Y+VG+ G + R EI R+ R + + +E I V+ ES Sbjct: 153 PPYSVGEC--GRFGVQKR---REIGHGRLARRGVLAVMPSL--DEFPYTIRVVSEITESN 205 Query: 125 -SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLFV 178 S + S+ +S ALM +G+P + PV G + + G+ VL+ L DED G +D V Sbjct: 206 GSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKV 265 Query: 179 SGTQDAV--LMVELEANQLSEDVVLDAI 204 +GT + V L ++++ ++E+++ A+ Sbjct: 266 AGTSEGVSALQMDIKIEGITEEIMRQAL 293 >gi|254393066|ref|ZP_05008227.1| polynucleotide phosphorylase/polyadenylase [Streptomyces clavuligerus ATCC 27064] gi|294815456|ref|ZP_06774099.1| Polyribonucleotide nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326443808|ref|ZP_08218542.1| polynucleotide phosphorylase/polyadenylase [Streptomyces clavuligerus ATCC 27064] gi|197706714|gb|EDY52526.1| polynucleotide phosphorylase/polyadenylase [Streptomyces clavuligerus ATCC 27064] gi|294328055|gb|EFG09698.1| Polyribonucleotide nucleotidyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 739 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/712 (40%), Positives = 420/712 (58%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE Q++ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228 A++MVE EA + + +V D + G KP I+ + K LA AK Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPEGE 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283 P+ ++ +D + E ++ +K +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLEYQD--DVYEALTAAVKGELAQALTIAGKQDRETELDRVKELAAEKLLPAFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + +VR ++ KVR+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRSLTKALVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720 >gi|254821343|ref|ZP_05226344.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium intracellulare ATCC 13950] Length = 744 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 295/726 (40%), Positives = 430/726 (59%), Gaps = 51/726 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E ++L+ +S K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVMSLDPNDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AASA+ LSGLPF GP+ G +V I+GQ+V P +++ ++ D+ V+G Sbjct: 133 AINAASASTQLSGLPFSGPIGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRIVGGGAA 192 Query: 181 TQD-AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAK 223 +D A++MVE EA + +E VV + G KP I + +LA Sbjct: 193 EKDIAIMMVEAEATENVIELVEGGAQAPTETVVAE----GLEAAKPFIATLCTAQEELAG 248 Query: 224 MCAKEPIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 AK V + F +E++ + + ++L + I K R + D+LK ++++ Sbjct: 249 AAAKP--VGEFPTFPDYQEDVYYSVASVATDELAKALTIGGKAERDARTDELKAEVLARL 306 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + E E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+ Sbjct: 307 A-ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSA 365 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREI Sbjct: 366 LFQRGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREI 425 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PV Sbjct: 426 GHGALAERALIPVLPGVEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPV 485 Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 AGIAMGLV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ G Sbjct: 486 AGIAMGLVSDDVEIDGRTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDG 545 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK RL IL M++ + ++ ++ + PRV + +P D+I VIG G Sbjct: 546 IPSQVLAGALGQAKDARLTILEVMAEAI-DAPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 604 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 KVI GI E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK Sbjct: 605 KVINGITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVK 664 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + Sbjct: 665 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL- 723 Query: 689 VVDQNT 694 V D N+ Sbjct: 724 VEDDNS 729 >gi|259507481|ref|ZP_05750381.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|259164969|gb|EEW49523.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium efficiens YS-314] Length = 766 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DGAV TY ET++LAT ++G DFFPLTV+ +ER Sbjct: 39 DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 97 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QVII VM E S Sbjct: 98 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 157 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180 VV++ ASAA +SGLP G V G ++ I GQ+V P ++ + S +L V+G Sbjct: 158 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 217 Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217 + AV+MVE A SE+VV + G KP I+ Sbjct: 218 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 274 Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267 + + LA+ AKE P+ D ++ +E++ S+ + + + + + Sbjct: 275 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 334 Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 + ++++K++ F + ++ EI + + + K+VR +L + R+DGR +RD+ Sbjct: 335 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 394 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386 +V L+ R HGSSLF RG+TQ + V TL + EQ++DSL+ +M HYNF P +TG Sbjct: 395 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 454 Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446 E R+G+P RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L Sbjct: 455 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 514 Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502 +L +AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT ITA Sbjct: 515 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 574 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +Q+D K+ GI ++ AL+QA+ RL IL M++V+ + ++ +F PR+ + IP + Sbjct: 575 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 633 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620 I +IG GK I + E+TGA ++I+DDGTV I+++S EAA E I ++ + +P+V Sbjct: 634 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 693 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679 + + G VVK FGAFV RDGLVHIS+L +RV K DVV G+ + V++ D D+ Sbjct: 694 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 753 Query: 680 RGKIKLSMKVVDQN 693 RGKI L + VV+++ Sbjct: 754 RGKISL-VPVVEED 766 >gi|187610337|sp|Q8FPB7|PNP_COREF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 752 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DGAV TY ET++LAT ++G DFFPLTV+ +ER Sbjct: 25 DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 83 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QVII VM E S Sbjct: 84 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 143 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180 VV++ ASAA +SGLP G V G ++ I GQ+V P ++ + S +L V+G Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 203 Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217 + AV+MVE A SE+VV + G KP I+ Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 260 Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267 + + LA+ AKE P+ D ++ +E++ S+ + + + + + Sbjct: 261 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 320 Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 + ++++K++ F + ++ EI + + + K+VR +L + R+DGR +RD+ Sbjct: 321 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 380 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386 +V L+ R HGSSLF RG+TQ + V TL + EQ++DSL+ +M HYNF P +TG Sbjct: 381 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 440 Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446 E R+G+P RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L Sbjct: 441 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 500 Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502 +L +AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT ITA Sbjct: 501 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 560 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +Q+D K+ GI ++ AL+QA+ RL IL M++V+ + ++ +F PR+ + IP + Sbjct: 561 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 619 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620 I +IG GK I + E+TGA ++I+DDGTV I+++S EAA E I ++ + +P+V Sbjct: 620 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 679 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679 + + G VVK FGAFV RDGLVHIS+L +RV K DVV G+ + V++ D D+ Sbjct: 680 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 739 Query: 680 RGKIKLSMKVVDQN 693 RGKI L + VV+++ Sbjct: 740 RGKISL-VPVVEED 752 >gi|25028424|ref|NP_738478.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium efficiens YS-314] gi|23493709|dbj|BAC18678.1| putative guanosine pentaphosphate synthetase and polyribonucleotide nucleotidyltransferase [Corynebacterium efficiens YS-314] Length = 769 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DGAV TY ET++LAT ++G DFFPLTV+ +ER Sbjct: 42 DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 100 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QVII VM E S Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 160 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180 VV++ ASAA +SGLP G V G ++ I GQ+V P ++ + S +L V+G Sbjct: 161 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 220 Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217 + AV+MVE A SE+VV + G KP I+ Sbjct: 221 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 277 Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267 + + LA+ AKE P+ D ++ +E++ S+ + + + + + Sbjct: 278 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 337 Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 + ++++K++ F + ++ EI + + + K+VR +L + R+DGR +RD+ Sbjct: 338 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 397 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386 +V L+ R HGSSLF RG+TQ + V TL + EQ++DSL+ +M HYNF P +TG Sbjct: 398 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 457 Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446 E R+G+P RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L Sbjct: 458 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 517 Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502 +L +AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT ITA Sbjct: 518 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 577 Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 +Q+D K+ GI ++ AL+QA+ RL IL M++V+ + ++ +F PR+ + IP + Sbjct: 578 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 636 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620 I +IG GK I + E+TGA ++I+DDGTV I+++S EAA E I ++ + +P+V Sbjct: 637 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 696 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679 + + G VVK FGAFV RDGLVHIS+L +RV K DVV G+ + V++ D D+ Sbjct: 697 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 756 Query: 680 RGKIKLSMKVVDQN 693 RGKI L + VV+++ Sbjct: 757 RGKISL-VPVVEED 769 >gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes KPA171202] gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes SK187] gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes J165] gi|81611463|sp|Q6A7P6|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes KPA171202] gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes SK187] gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes J165] gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL013PA1] gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL110PA1] gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL110PA2] gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL087PA2] gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL025PA1] gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL059PA1] gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL046PA2] gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL036PA1] gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL036PA2] gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL063PA1] gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL063PA2] gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL086PA1] gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL005PA4] gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL050PA1] gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL050PA3] gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL036PA3] gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL067PA1] gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL002PA1] gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL002PA2] gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL082PA1] gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL037PA1] gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL072PA2] gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL005PA2] gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL005PA3] gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL053PA2] gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL078PA1] gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL027PA2] gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL002PA3] gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL072PA1] gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL059PA2] gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL046PA1] gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL030PA2] gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL096PA3] gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL097PA1] gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL013PA2] gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL092PA1] gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL087PA3] gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL083PA2] gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL020PA1] gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL087PA1] gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL025PA2] Length = 733 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 278/707 (39%), Positives = 423/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes 266] Length = 749 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 278/709 (39%), Positives = 424/709 (59%), Gaps = 44/709 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 39 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 97 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 98 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 157 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 158 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 217 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 218 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 277 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 278 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 332 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 333 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 392 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 393 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 452 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 453 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 512 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 513 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 572 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 573 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 631 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 632 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 691 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L + Sbjct: 692 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVL 740 >gi|258652431|ref|YP_003201587.1| polynucleotide phosphorylase/polyadenylase [Nakamurella multipartita DSM 44233] gi|258555656|gb|ACV78598.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Nakamurella multipartita DSM 44233] Length = 750 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/711 (40%), Positives = 425/711 (59%), Gaps = 42/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV A + T++L+ + K+ DFFPLT++ +ER YA Sbjct: 18 FGTRTVRFETGRLAQQAAGAVAAYLDDDTMLLSATSVGKHPKEQFDFFPLTIDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F+ +NE QV+I VM + + V+ Sbjct: 78 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFTNGLRNEVQVVITVMALNPDDLYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----A 184 ++ AASA+ +SGLPF GPV G +V I+GQ+V PR E ++ D+ V+G A Sbjct: 138 AINAASASTQISGLPFSGPVAGVRVALIDGQWVAFPRHSELERAVFDMVVAGRLAGDDVA 197 Query: 185 VLMVELEANQLS------------EDVVLDAI----IFGHNECKPVIEAISKLAKMCAKE 228 ++MVE EA + E+VV + + F C+ E K AK A+ Sbjct: 198 IMMVEAEATTATVGLVAGGAVAPTEEVVAEGLEAAKPFLRVLCQAQNELAGKSAKPVAEF 257 Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286 P+ ++ F+ +E S + + L ++ K R +D +K ++ S+ + Sbjct: 258 PLFPAYQEDAFAAVENVASDELAQALTIAG----KQDRDAAVDAVKARVYEQLSATFAG- 312 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 E E+ + F + K+VR +L KVR+DGR +R + A+VG L R HGS+LF RG+T Sbjct: 313 RESELGNAFRSVTKKLVRQRVLKDKVRIDGRGLTDIRTLGAEVGYLPRVHGSALFERGET 372 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ +D+L+ R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 373 QILGVTTLNMLRMEQQLDTLAPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 432 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ VAGIAMGL Sbjct: 433 RALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGL 492 Query: 467 VKD---GDD------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 V D +D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 493 VSDTVTAEDGTSSVQYVALTDILGAEDAFGDMDFKVAGTRQFVTALQLDTKLDGIPSEVL 552 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QA+ R IL+ M + + ++ + E PR+ + +P D+I VIG GK+I I Sbjct: 553 RGALVQARDARFTILDVMHEAI-DAPDPMSENAPRITTIKVPVDKIGEVIGPKGKMINSI 611 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 EQTGA + I+DDGT+ ++ ++AA ++I SI + +P+V + + G VVK FGA Sbjct: 612 TEQTGADIAIEDDGTIFVSGPDGGAVQAAIDIINSIANPQLPKVGERFLGTVVKTTAFGA 671 Query: 636 FVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FV RDGLVHIS+L S +R+AK DVV GD + V++++ D RGKI L Sbjct: 672 FVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGDKLQVEIVEIDARGKISL 722 >gi|38234048|ref|NP_939815.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium diphtheriae NCTC 13129] gi|81564774|sp|Q6NGP1|PNP_CORDI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|38200310|emb|CAE49995.1| guanosine pentaphosphate synthetase/ polyribonucleotide nucleotidyltransferase [Corynebacterium diphtheriae] Length = 755 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 429/723 (59%), Gaps = 48/723 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DG+V TY +T++LAT ++G DFFPLTV+ +ER Sbjct: 29 DFGKRTIRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 87 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ + + Sbjct: 88 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMYD 147 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSG 180 VV++ ASAA LSGLP GPV G ++ I GQ++ P ++ +Q +L V+G Sbjct: 148 VVAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVAG 207 Query: 181 ----------TQD--AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK 220 T D A++MVE A + D V + G KP IE + + Sbjct: 208 RIVSKKQGKKTVDDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIEVLCR 267 Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270 LA+ AKE P+ D + +E+++S+ ++ L + +++ Sbjct: 268 AQAGLAERAAKETQEFPLFPPYTDVVYDAVEKKVSKKLRSLLTIKSKQDRDEATNAYMEE 327 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 ++ +++ S+ + I + + + K+VR ++L + R+DGR +RD+ +V Sbjct: 328 IEADLIAQLGSDDEAAASKAIRAAYNAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVD 387 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L+ R HGSSLF RG+TQ + V TL + EQ +DSL+ ++ HYNF P +TGE R Sbjct: 388 LIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATSKRYIHHYNFPPYSTGETGR 447 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +G+P RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S+L+L + Sbjct: 448 VGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 507 Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT ITA+Q+D Sbjct: 508 AGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRQFITALQLD 567 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 K+ GI ++ AL QA R IL+ M++V+ E+ ++ ++ PR+ + +P ++I V Sbjct: 568 TKLDGIPSEVLAQALSQANDARNTILDTMAEVI-ETPDEMSDYAPRITAITVPVNKIGEV 626 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624 IG GK I I E+TGA ++I++DGTV ++++S A EAA E I +I + +P+V + + Sbjct: 627 IGPKGKTINSITEETGANISIEEDGTVYVSAASGAAAEAAIEKINAIANPQLPKVGERFL 686 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G VVK FGAFV RDGLVHIS+L +R+ K DVV GD + V++LD D+RGKI Sbjct: 687 GTVVKTTAFGAFVSLLPGRDGLVHISKLGGGKRIEKVEDVVNVGDKLEVEILDIDNRGKI 746 Query: 684 KLS 686 L+ Sbjct: 747 SLA 749 >gi|319950925|ref|ZP_08024802.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4] gi|319435418|gb|EFV90661.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4] Length = 753 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 291/733 (39%), Positives = 426/733 (58%), Gaps = 59/733 (8%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETGR+A+Q+ G+V+A + T++L+ + KD DFFPLTV+ +ER Y Sbjct: 24 DFGRREVRFETGRLAKQAAGSVVAYLDDDTMLLSATTAGKHPKDHFDFFPLTVDVEERMY 83 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP+ + IL R+IDR +RP F+ +NE QV++ VM D + V Sbjct: 84 AAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFADGVRNEVQVVVTVMSLDPKDLYDV 143 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180 V++ AASA+ LSGLPF GPV G +V I GQ+V P ++ +G+ D+ V+G Sbjct: 144 VAINAASASTQLSGLPFSGPVGGVRVALIPTAADPAGQWVAFPTSEQLEGAVFDMVVAGR 203 Query: 181 -------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK--------LAKMC 225 A++MVE EA D V++ I G P E +++ +A++C Sbjct: 204 VVGSGDDADVAIMMVEAEAT----DNVIEKIAGGAQ--APTEEVVAQGLEAAKPFIAELC 257 Query: 226 AKEPIVIDSKDFSKLEEEM----------------SQMIKEDLRVSCFIPEKYVRCKQID 269 A + + + + E + + E +R++ +K R D Sbjct: 258 AAQQALATAAPGTPREFPLFPPYADDAYAAVAEVAETKLAEIMRIA----DKQEREVATD 313 Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329 +LK ++ + + GEI + F+ + K+VR +L R+DGR +R +SA+V Sbjct: 314 ELKASVLDELADRFAD-RLGEIGAAFKSLTKKIVRQRILTDHFRIDGRGVRDIRALSAEV 372 Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389 ++ R HGS+LF RG+TQ + V TL + Q +DSL +M HYNF P +TGE Sbjct: 373 EVIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETG 432 Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449 R+G+P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L+ Sbjct: 433 RVGSPKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLL 492 Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505 +AGVP+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+ Sbjct: 493 NAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTGMFVTALQL 552 Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565 D K+ GI ++ AL QA+ RL IL+ M++ + E +L F PR+ + +P D+I Sbjct: 553 DTKLDGIPSEVLAGALTQAREARLTILDVMAEAIDEPD-ELSPFAPRIIAIKVPVDKIGE 611 Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY 623 VIG GK+I I E+TGA V+I+DDGTV I ++ +AA + I +I + +P+V + + Sbjct: 612 VIGPKGKMINSITEETGASVSIEDDGTVYIGATDGESAQAAIDKINAIANPQLPKVGERF 671 Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 G VVK FGAF+ RDGLVHIS+L +RV K DVV GD + V++ D D+RGK Sbjct: 672 LGTVVKTAPFGAFLSLLPGRDGLVHISKLGGGKRVGKVEDVVNVGDKMQVEIADIDNRGK 731 Query: 683 IKLSMKVVDQNTG 695 I L D + G Sbjct: 732 ISLVPVGEDSDNG 744 >gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL027PA1] Length = 733 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/707 (39%), Positives = 423/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENPRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes SK137] gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes SK137] gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL074PA1] gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL007PA1] gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL056PA1] gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL053PA1] gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL045PA1] gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL005PA1] gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL038PA1] gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL096PA2] gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL043PA2] gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL043PA1] gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL099PA1] Length = 733 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/709 (39%), Positives = 423/709 (59%), Gaps = 44/709 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAIS--------KLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L + Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVL 724 >gi|300743980|ref|ZP_07073000.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa M567] gi|300380341|gb|EFJ76904.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa M567] Length = 753 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/713 (40%), Positives = 421/713 (59%), Gaps = 43/713 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+A+Q+ G+VL T ET +L+ +S ++G DFFPLTV+ +ER YA GK Sbjct: 35 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE RP IL +R+IDR +RP F+K +NE QV++ V+ + + + ++ Sbjct: 95 IPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFAIN 154 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183 AASA+ LSG PF GP+ G ++ I+GQ+V P+ + + D+ V+G ++D Sbjct: 155 AASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGSED 214 Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229 A++MVE EA S ++ + + G KP I A+ K L + K Sbjct: 215 VAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGKPD 274 Query: 230 IVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 + + F E++ +K E L I K R +L+ +++ + E Sbjct: 275 LELPY--FGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332 Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E E+ F + VR +L ++VR+DGR +R ++A+V +L R HGS++F R Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSL ++ HYNF P +TGE R+G+P RREIGHG Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIA Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512 Query: 464 MGLVKD---GDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D G+ + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 513 MGLVSDEVNGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ RLHIL+ ++ + ++ ++ EF PR+ + +P +I VIG GK+I I E Sbjct: 573 ALTQAREARLHILDVLTAAI-DAPDEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I ++ EAAR I +I + VPEV + Y G VVKV DFGAF+ Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS++ +RV DVV G V V++ DDRGK+ LS Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744 >gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL083PA1] Length = 733 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 279/716 (38%), Positives = 426/716 (59%), Gaps = 44/716 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAIS--------KLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L + + +T Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVLASDEDDT 731 >gi|311898696|dbj|BAJ31104.1| putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Kitasatospora setae KM-6054] Length = 736 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 290/717 (40%), Positives = 422/717 (58%), Gaps = 36/717 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ + K+ DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKQPKEHFDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV++ VM + + VV Sbjct: 77 AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVVTVMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----D 183 ++ AASA+ L+GLPF GP+ G +V INGQ+V P E + D+ V+G Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELESAVFDMVVAGRALPDGDV 196 Query: 184 AVLMVELEAN----QL----SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235 A++MVE EA QL +E + + G KP I+ + AK+ + Sbjct: 197 AIMMVEAEATTKTIQLVEGGAEAPTEEVVAAGLEAAKPFIKVLCAAQAQLAKQ-AAKPTG 255 Query: 236 DFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 +F + E ++ +K++L + I K R ++D +K E E Sbjct: 256 EFPRFLEYQDDVLAALTSAVKDELAKALTIAGKQERQNELDRIKGVAADKLLPEFEG-RE 314 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 EI + + + K+VR ++ KVR+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 315 KEISAAYNALTKKIVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQI 374 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA RA Sbjct: 375 LGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERA 434 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 435 ILPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLIS 494 Query: 469 ---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 DG+ ++ L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++ AL+QA Sbjct: 495 QEIDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFITALQLDTKLDGIPASVLAAALKQA 554 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K RLHIL+ M++ + ++ ++ PR+ + IP D+I VIG GK+I I E TGA+ Sbjct: 555 KDARLHILDVMNEAI-DAPDEMSPNAPRIITIKIPVDKIGEVIGPKGKMINQIQEDTGAE 613 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + I+DDGT+ I ++ EAAR I I + +PEV + Y G VVK FGAFV Sbjct: 614 ITIEDDGTIYIGAADGPAAEAARSTINQIANPTMPEVGERYLGTVVKTTTFGAFVSLMPG 673 Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L + VV+ G Sbjct: 674 KDGLLHISQIRKLAGGKRVENVEDVLAVGAKVQVEIAEIDPRGKLSL-IPVVEGEEG 729 >gi|295395380|ref|ZP_06805579.1| polyribonucleotide nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971702|gb|EFG47578.1| polyribonucleotide nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 749 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/714 (39%), Positives = 418/714 (58%), Gaps = 41/714 (5%) Query: 16 LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 ++ TGR+A+Q+ G AT GET +L+ ++ ++G DFFPLTV+ +ER YA GKIP Sbjct: 27 IEFGTGRLAQQAAGCATATLDGETTLLSATAVSKNPREGFDFFPLTVDVEERMYAAGKIP 86 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 G + RRE RPT + IL R+IDR +RP F K +NE Q+++ V+ + +++ AA Sbjct: 87 GSFFRREGRPTTDAILACRLIDRPLRPSFVKGLRNEVQIVVTVLSMHPDHLYDTLAINAA 146 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDAVLMVE 189 S + L GLPF GP+ G ++ I+ Q+V P + + D+ V+G A++MVE Sbjct: 147 SMSTQLGGLPFSGPIGGVRIALIDDQWVAFPNYSQLENAVFDMAVAGRVVGDDVAIMMVE 206 Query: 190 LEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKEPIVIDSKDF 237 EA++ S D++ + + G KP I A +LA AK + + F Sbjct: 207 AEASENSWDLIQGGARKPTEEVVAEGLEAAKPFIRELVRAQQELADRVAKP--TAEFELF 264 Query: 238 SKLEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 E+++ + ++E D + F I +K R D+L +++ E E EIV Sbjct: 265 KDYEDDVYEAVRELAWDKQTQNFQIADKQEREAAGDELLDSLLNDLG-EKFEGRESEIVG 323 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 + ++VR +L ++VR+DGR + +R +SA+ +L R HGS+LF RG+TQ + V T Sbjct: 324 ALNSMTKEIVRKRILTERVRIDGRGIKDIRPLSAETNILPRVHGSALFERGETQIMGVTT 383 Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 L + EQ +DSL+ ++ HYNF P +TGE R+G+P RREIGHG LA RA+ PV+ Sbjct: 384 LDMLKMEQQIDSLTPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVI 443 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---- 469 P FPY +R VSE S+GS+SM +VC S+++L+ AGVP+ PVAGIAMGLV D Sbjct: 444 PSREDFPYAIRQVSEALGSNGSTSMGSVCASTMSLLSAGVPLRAPVAGIAMGLVSDVIET 503 Query: 470 ----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++ AL+QA+ Sbjct: 504 DQGKQTAYAALTDILGAEDAFGDMDFKVAGTKDFITAIQLDTKLDGIPASVLAAALKQAR 563 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 RL IL+ ++ ++E ++ PR+ + IP D+I VIG GK+I I E TGA + Sbjct: 564 EARLTILDVLTAAIAEPG-EMAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQEDTGADI 622 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 +I+DDGTV I ++ EAAR I +I + VPEV + Y G VVK+M FGAFV + Sbjct: 623 SIEDDGTVFIGATDGPAAEAARSAINAIANPQVPEVGERYLGTVVKLMSFGAFVSLTPGK 682 Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 DGL+HIS+L +RV DV+ G + V++ DDRGK+ L V+D++ Sbjct: 683 DGLLHISELKKLNGGKRVEDAEDVLGVGQKIQVEITKVDDRGKLSLQ-PVIDED 735 >gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] Length = 748 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 287/718 (39%), Positives = 421/718 (58%), Gaps = 44/718 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R L+ ETG++ARQ+DG+V TY +T++LAT ++G DFFPLTV+ +ER Sbjct: 28 DFGTRTLRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 86 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV++ VM D E Sbjct: 87 YAAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYD 146 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV--- 178 VV++ ASAA LSGLP G V G ++ I GQ+V P ++ + +L V Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206 Query: 179 ----SGTQD--AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220 G +D A++MVE A + + D A+ G KP I EA + Sbjct: 207 RIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266 Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274 LA AKE P+ D F+ +E+ ++ +++ L + + ++ +++K Sbjct: 267 LADRAAKETQEFPLFPAYGDDVFAAVEKAATKKLEKLLTIPGKQERDDATNEYMEQVEEK 326 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 ++ F + +I + + ++VR +L + R+DGR +RD+S +V L+ R Sbjct: 327 LLDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPR 386 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGSSLF RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSP 446 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L +AGVP Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506 Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 + PVAGIAMGL V + F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ Sbjct: 507 LKAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLD 566 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL+QA+ R IL M++V+ ++ ++ P++ + IP ++I +IG Sbjct: 567 GIPSKVLAQALEQARDARSTILETMAEVI-DTPDEMSGLAPKITSVKIPVNKIGELIGPK 625 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GK I I E+TGA V+I+DDGTV +++++ +AA + + SI + +P+V + + G VV Sbjct: 626 GKTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVV 685 Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 K + FGAFV RDGL+HIS L ER+ K DV+ GD V V++ D D+RGKI L Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743 >gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes DSM 1740] gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes] Length = 736 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 282/736 (38%), Positives = 431/736 (58%), Gaps = 71/736 (9%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 EI + E G IA+Q++G+VL G++V+LA+V Y+ + +DF PLTV Y E++ Sbjct: 7 EIALPNKTETFEFGAIAKQANGSVLYRCGKSVLLASVCYESDERVKEDFLPLTVQYIEKS 66 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GK PGG+++RES+P + E L SR+IDRS+RPLF K Y + TQ+ + V+ ++ Sbjct: 67 YAAGKFPGGFIKRESKPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQNDADLQ 126 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +++ AASAAL +S +P PV G ++ ING V+NP E + +LDLFVSG ++ +L Sbjct: 127 TMALNAASAALFVSDIPLRKPVHGLRIGKINGALVVNPTTKEMSESTLDLFVSGVEEDLL 186 Query: 187 MVELEANQLSEDVVLDAIIFG-----------------HNECKP---------------- 213 M+E+ L+ D + + G NE K Sbjct: 187 MIEMRT--LASDEINNTCFVGDCGMVAASASDILKIHQANEMKEEELLEALELAKTSIKK 244 Query: 214 ----VIEAISKLAK---MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266 +EA + LAK + +P + S+ + ++E + IKE + + + + Sbjct: 245 ASACYVEAFTPLAKPDAILELKPDITSSEIYQYIKENHAIAIKEAIT-------RMAKSE 297 Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVR 323 + DLK+ SSE + +E +V+E + + + VR ++L+++ R DGR + VR Sbjct: 298 RHSDLKRIAKEIASSERAQESEWSFEAVYETVGKYKREAVRALILEERRRADGRGLKEVR 357 Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFL 381 I Q +L H S+LF RG+TQA+VV TLG D Q + L+ G+ + FM+HYNF Sbjct: 358 PIDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSSKERFMVHYNFP 417 Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441 + GE +GAP RRE+GHG LA+RA+ P + + T+R+VSEI ES+GSSSMATV Sbjct: 418 SFSVGEAGMVGAPGRRELGHGNLAKRALEPTIEEWG--AQTIRLVSEILESNGSSSMATV 475 Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501 CG SLAL AG+ + VAG+AMGL+ + + IL+DI G EDH G MDFK+AGT +GIT Sbjct: 476 CGGSLALKAAGINTTALVAGVAMGLIVEAEKHAILTDIMGLEDHDGDMDFKIAGTSTGIT 535 Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561 AMQMD+K+GG+S I+ AL QAK GR HIL M K SE + E P ++I +I P Sbjct: 536 AMQMDIKLGGLSMEILKEALYQAKEGREHILGIMEKAQSEIIIN-DEILPSLQIFSINPG 594 Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT------ 614 +I ++IG GK I+ I+E+ ++++ D+G VK+ S+ ++EAA+E I SI+ Sbjct: 595 RIVDIIGQAGKTIKEIIERFEVAIDLNRDNGEVKVTGSNKQKVEAAKEHILSISNQEAPQ 654 Query: 615 -----DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 DV +++KG+V K++DFGAF+ DGL+H+S++ R + +V+KEG+ Sbjct: 655 RVRVADVYSAGEVFKGKVKKIVDFGAFIELPKGGDGLLHVSKIVQHRDQRIDEVIKEGEE 714 Query: 670 VWVKLLDFDDRGKIKL 685 + V++L ++ K++L Sbjct: 715 IEVQILSI-NKNKVEL 729 >gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] Length = 710 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 267/689 (38%), Positives = 434/689 (62%), Gaps = 13/689 (1%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR L +ETG +A Q++G+ + T ++ATVV K G +F PL ++Y+E+ A GK Sbjct: 15 GRTLSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYREKYSAGGK 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE RP++ EIL R++DR +RPLF K + E Q++I+++ +D+ P ++ + Sbjct: 75 IPGGFIKREGRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMISLLSYDINVLPDGLAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 AS A+ LSG+PF+GPV ++ + +++NP +++ + S +DL V G+ +++LMVE E Sbjct: 135 VASTAVYLSGIPFKGPVSAVRIIRMKNLFIINPGIEDVKKSDIDLIVGGSINSILMVEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV---IDSKDFSKLEEEMSQMI 248 ++SE ++ I H K I+A L K K+ + I + +F L+E+++ + Sbjct: 195 MKEVSEKEIMKIIKIAHFYIKRQIKAQINLLKKIKKKSKIDFNIKNNNFFYLKEKLNFLF 254 Query: 249 KEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 E + + +K +R K+I+ L + F ++H +E EI +F +I+ K++R ++ Sbjct: 255 FEKIYNIYKKFYKKKIRLKKINILLNNIKKIFFNDHIIIHENEIDIIFFEIKKKIIREII 314 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 + +R+DGR + +R+IS++V L HGS++F RG+TQA+ VTLG+ D +D++ Sbjct: 315 CKENIRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVI 374 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + F +HYNF P +TGE+ + SRREIGHG LA+RA+ ++P PYT+R+VS Sbjct: 375 IQDKQKFYLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQRALKNIIPFDN--PYTIRVVS 432 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDH 485 ++ ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+ K + +ILSDI GDED+ Sbjct: 433 DVLESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIFNKFTGEALILSDILGDEDN 492 Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 +G MDFK+ GT G+TA QMD+KI GIS +I++ + +AK+G + I+N M L+ R+ Sbjct: 493 IGDMDFKITGTKYGMTACQMDLKIYGISYDILLKTILKAKKGIIFIINNMLTTLNSPRIS 552 Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAE 602 L P++ IP I VIG GGK+I+ I T + I++ G ++I + + Sbjct: 553 LKPTAPKIYTFNIPKTFIGAVIGPGGKIIQEIQYSTETNLKIEEKENLGKIEILGKNYNK 612 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+ A E I+ I P++ KIYK +V + FG FV +GL+HIS++S +++ + Sbjct: 613 IKDAIEKIKYIVFFPKIGKIYKAKVKYIKPFGVFVELSKGIEGLLHISEISWKKLTNLEN 672 Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +K G+ + VK L +++ GKIKLS K++ Sbjct: 673 YLKIGNFINVKYLGKNNKNGKIKLSHKIL 701 >gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL030PA1] Length = 733 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S + PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDGMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|227833344|ref|YP_002835051.1| polyribonucleotide nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262184330|ref|ZP_06043751.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium aurimucosum ATCC 700975] gi|257096677|sp|C3PH09|PNP_CORA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|227454360|gb|ACP33113.1| polyribonucleotide nucleotidyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 756 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 288/717 (40%), Positives = 423/717 (58%), Gaps = 42/717 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+ G+V E T++L+T ++G DFFPLTV+ +ER Y Sbjct: 35 DFGTRTIRFETGQLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 94 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV++ V+ D E V Sbjct: 95 AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMDPEEYYDV 154 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV---- 178 V++ ASA+ LSGLP GPV G ++ I GQ+V P ++ + +L V Sbjct: 155 VAINGASASTQLSGLPVSGPVGGVRMALIADDKHPKGQWVAFPNNEQHERALFEMVVAGR 214 Query: 179 ---SGTQD--AVLMVELEAN-QLSEDVVLDA-------IIFGHNECKPVI----EAISKL 221 G +D A++MVE A ++E + A + G KP I EA + L Sbjct: 215 IVKKGRKDDVAIMMVEAGAGVNVAERIKEGAPAPQESTVAEGLEAAKPFIKSLCEAQAGL 274 Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 A+ AKE P+ D ++ +E+ S+ +++ L + + ++ ++ K+ Sbjct: 275 AERAAKETQEFPLFPPYGDDVYAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEAKL 334 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + F + +I + F + +VRT +L + R+DGR +RD+ +V L+ R Sbjct: 335 IEDFDDLDEADASKQIRNAFNAVMKDIVRTKILTEGFRIDGRGVTDIRDLGVEVDLIPRA 394 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGSSLF RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P Sbjct: 395 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPYSTGETGRVGSPK 454 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L +AGVP+ Sbjct: 455 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 514 Query: 456 SKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGL V + F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ G Sbjct: 515 KAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDG 574 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I +++ AL+QA+ R IL+ MS+V+ ES ++ PR+ + IP ++I +IG G Sbjct: 575 IPSHVLADALEQARDARAAILDTMSEVI-ESPDEMSGLAPRITSVTIPVNKIGELIGPKG 633 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K I I E+TGA V+I++DGTV I++++ +AA + + SI + +P+V + + G VVK Sbjct: 634 KTINAITEETGADVSIEEDGTVYISAATGEAADAAIDRVNSIANPQLPKVGERFLGTVVK 693 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + FGAFV RDGLVHIS+L ER+ K DVV GD + V++ D D+RGKI L Sbjct: 694 TVAFGAFVSLTPGRDGLVHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 750 >gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes J139] gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium acnes J139] gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL001PA1] gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL082PA2] gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL110PA3] gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL110PA4] gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL060PA1] gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL103PA1] Length = 733 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 279/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GPV G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|118466887|ref|YP_882853.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium 104] gi|187610285|sp|A0QIW5|PNP_MYCA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118168174|gb|ABK69071.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Mycobacterium avium 104] Length = 748 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E ++L+ +S K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183 ++ AASA+ L GLPF GP+ G +V I+G +V P +++ ++ D+ V+G + Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 192 Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAIS--------K 220 A++MVE EA +E VV G KP IE + K Sbjct: 193 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 248 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 A+ + P D D + ++ + ++L + I K R + D+LK ++++ + Sbjct: 249 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 306 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 E E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+L Sbjct: 307 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 365 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIG Sbjct: 366 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 425 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVA Sbjct: 426 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 485 Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 GIAMGLV D GD F+ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 486 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 545 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI ++ AL QAK RL IL M++ + E ++ + PRV + +P D+I VI Sbjct: 546 KLDGIPSQVLAGALSQAKDARLTILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 604 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625 G GK+I I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G Sbjct: 605 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 664 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 VVK DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI Sbjct: 665 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 724 Query: 685 LSM 687 L + Sbjct: 725 LVL 727 >gi|333024088|ref|ZP_08452152.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces sp. Tu6071] gi|332743940|gb|EGJ74381.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces sp. Tu6071] Length = 738 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 284/712 (39%), Positives = 420/712 (58%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227 A++MVE EA + + +V + + G + KP I+ + K + Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++ +L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + VVR ++ K R+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL VK ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720 >gi|296117686|ref|ZP_06836270.1| polyribonucleotide nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295969417|gb|EFG82658.1| polyribonucleotide nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 779 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/730 (38%), Positives = 429/730 (58%), Gaps = 67/730 (9%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R + ETG++ARQ+DG+V + + T++L TV ++G DFFPLTV+ +ER Y Sbjct: 58 DFGTRTITFETGQLARQADGSVTTYFDDDTMLLTTVTASNQPREGLDFFPLTVDVEERMY 117 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE+RP+ IL R+IDR +RP F K +NE QVI V+ D V Sbjct: 118 AAGKIPGSFFRREARPSTEAILACRLIDRPLRPTFVKGLRNEVQVINTVLSLDPAEYYDV 177 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181 +++ +SAA LSGLP GPV G ++ + GQ+V P ++ + +L ++ V+G Sbjct: 178 IAINGSSAATQLSGLPVSGPVGGVRMALLADDKHPEGQWVAFPNAEQHERALFEMVVAGR 237 Query: 182 ------------QDAVLMVELEAN-QLSEDVVLDA-------IIFGHNECKPVI----EA 217 A++MVE A + E V A + G KP I EA Sbjct: 238 IVSRKNKGKNVDDVAIMMVEAGAGVHVHERVAEGAPAPQESTVAAGLEAAKPFIKTLCEA 297 Query: 218 ISKLAKMCAKEPIVIDSKDFS---------------KLEEEMSQMIKEDLRVSCFIPEKY 262 + LA+ AKE +K+F K E+++S++ + ++ Sbjct: 298 QAGLAERAAKE-----TKEFQLFPPYADEVYDAVARKAEKKLSKL----MTIAAKQERDE 348 Query: 263 VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV 322 +++++ +++ F+ + +S +I + + + ++VR +L + R+DGR +E + Sbjct: 349 ATNAHMEEVEAQLLEVFTEDDASK---QIRAAYNQLMKEIVREKILTEGFRIDGRAAEDI 405 Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382 RD+ A++GL+ R HGS+LF RG+TQ + V TL + EQ +DSL+ + ++ HYNF P Sbjct: 406 RDLGAEIGLIPRVHGSALFERGETQILGVTTLDMLKMEQTIDSLTPVESKRYIHHYNFPP 465 Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442 +TGE R+G+P RREIGHG LA RA+ PV+P QFPYT+R VSE S+GS+SM +VC Sbjct: 466 YSTGETGRVGSPKRREIGHGALAERALLPVIPPREQFPYTIRQVSEALGSNGSTSMGSVC 525 Query: 443 GSSLALMDAGVPISKPVAGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDS 498 S+++L +AGVP+ PVAGIAMGLV DG++ F+ L+DI G ED G MDFKVAGT Sbjct: 526 ASTMSLYNAGVPLKAPVAGIAMGLVSGEVDGEERFVALTDILGAEDAFGDMDFKVAGTSD 585 Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558 ITA+Q+D K+ GI ++ AL QA+ R IL+ M++ + + ++ P++ + I Sbjct: 586 YITALQLDTKLDGIPSEVLANALSQARNAREEILDIMAEGI-DGPDEMSPLAPKITSIKI 644 Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--V 616 P +I +IG GK I I E+TGA V+I+DDGTV ++++S +AA E + +I + + Sbjct: 645 PVSKIGELIGPKGKTINTITEETGADVSIEDDGTVYVSATSGEAADAAIEKVNAIANPQL 704 Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLL 675 P+V + + G VVK + FGAFV RDGL+HIS L ER+ K DVV GD + V++ Sbjct: 705 PKVGERFLGTVVKTVAFGAFVSITPGRDGLIHISNLGGDERIEKVEDVVNVGDKIQVEIA 764 Query: 676 DFDDRGKIKL 685 D D+RGKI L Sbjct: 765 DIDNRGKISL 774 >gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL044PA1] gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Propionibacterium sp. P08] Length = 735 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/707 (39%), Positives = 421/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 E+ F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M+ + +S ++ PR+ + IP D+I VIG GK+I I + TG Sbjct: 557 KEARTAILEVMNDAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGTN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas denitrificans DSM 1251] gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 721 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 292/719 (40%), Positives = 423/719 (58%), Gaps = 56/719 (7%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + ++I+ + + G +A+Q++GA G TV+LATVV D + DF PLTV Y Sbjct: 3 YDIKIDLKNKNEEYSFGEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYI 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GKIPGG+ +RE++ ++ E L SR++DRS+RPLF K + + TQ+ I V D ES Sbjct: 63 EKAYAAGKIPGGFFKRETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKES 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AASAAL +S + V +V I+G+ +LNP L E D+ +LDL++SGT++ Sbjct: 123 DLQVLALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKE 182 Query: 184 AVLMVELEA-------NQLSEDVVLD-----AIIFGH-NECKPVIEAISKLAKMCAKEPI 230 +LM+E+ + L D ++D AII H + P E I+ LAK E + Sbjct: 183 DLLMIEMRSKGGIKVDTNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKA---EEL 239 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPE------KYVRCKQIDDLKKKMVSYFSSEHS 284 + ++ + EE + KE + C KYVR D+K M SE S Sbjct: 240 LFETN--AMYEEMFKEFKKETSPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERS 297 Query: 285 S---------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329 + W+E E+ V E ++ + VR +L+ +VR DGR +R IS Sbjct: 298 TALRQLRKKIIITKEEWDEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISIST 357 Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGE 387 +L H S LF RG TQA+VV+T+G +D Q ++L+ GTQ +FM+HYNF + GE Sbjct: 358 NVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGE 417 Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447 S + RRE+GHG LA+RA+ P++ Q T+R+VSEI ES+GSSSMATVCG +A Sbjct: 418 ASPIMGTKRRELGHGNLAKRALEPIVNLEGQ---TVRLVSEILESNGSSSMATVCGGYMA 474 Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 L A + S +AGIAMG+V +GD + ILSDI G EDH G +DFKV G+ GITAMQMD+ Sbjct: 475 LRAADIETSDTIAGIAMGMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDI 534 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNV 566 K+GGIS NI+ AL QAK GR HI+N M + +E + + P + I P I ++ Sbjct: 535 KLGGISLNILKEALYQAKEGRAHIINIMQE--AEKNISFNDGVLPSTDFFHINPSFIGDI 592 Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK---- 621 IG GK IR I+E+ ++ID DG VK+ S + ++AARE I I P++ K Sbjct: 593 IGQAGKTIREIIEKFEVAIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYK 652 Query: 622 ---IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 I+KG V K+++FGAF+ DGL+HIS++S +RV K SD++KEG+ + V++L+F Sbjct: 653 VGDIHKGIVKKIVEFGAFIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF 711 >gi|41408989|ref|NP_961825.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413535|sp|Q73VX0|PNP_MYCPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|41397348|gb|AAS05208.1| GpsI [Mycobacterium avium subsp. paratuberculosis K-10] Length = 757 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E ++L+ +S K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183 ++ AASA+ L GLPF GP+ G +V I+G +V P +++ ++ D+ V+G + Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 201 Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI--------SK 220 A++MVE EA +E VV G KP IE + K Sbjct: 202 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 257 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 A+ + P D D + ++ + ++L + I K R + D+LK ++++ + Sbjct: 258 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 E E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+L Sbjct: 316 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 374 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIG Sbjct: 375 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 434 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVA Sbjct: 435 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 494 Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 GIAMGLV D GD F+ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 495 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 554 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI ++ AL QAK RL IL M++ + E ++ + PRV + +P D+I VI Sbjct: 555 KLDGIPSQVLAGALSQAKDARLTILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 613 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625 G GK+I I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G Sbjct: 614 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 673 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 VVK DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI Sbjct: 674 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 733 Query: 685 LSM 687 L + Sbjct: 734 LVL 736 >gi|84496941|ref|ZP_00995795.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp. HTCC2649] gi|84383709|gb|EAP99590.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp. HTCC2649] Length = 807 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 282/726 (38%), Positives = 430/726 (59%), Gaps = 47/726 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV A E T++L+T + ++G DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLAKQAGGAVSAYLDEDTMLLSTTTAGKHPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV+I+V+ + ++ V+ Sbjct: 78 AGKIPGSFFRREGRPSTEAILTCRLIDRPLRPTFKKGLRNEVQVVISVLALNPDAQYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG------TQ 182 ++ AASA+ +SGLPF GP+ +V IN Q+V P+ D ++ + D+ V+G + Sbjct: 138 AINAASASTQISGLPFSGPIGAVRVSLINDQWVAFPQFSDIERSTFDMVVAGRIVDDGSD 197 Query: 183 DAVLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKLA--------KMC 225 A++MVE EA + + ++V D + G K I+ + + K Sbjct: 198 VAIMMVEAEATEQTWNLVKNEGKTAPTEDVVAQGLEAAKGFIKVLCEAQADLAAKAAKPI 257 Query: 226 AKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-- 281 + PI +D +D ++ +E + + D + I K R ++D++K M + + Sbjct: 258 QEFPIFLDYEDDAYAAVEAK----VGSDAAAALQIAGKQEREDRLDEIKDSMKAALAGTD 313 Query: 282 -EHSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E S+ E E+ + ++ +Q K++R +L KVR+DGR +R +SA+V +L R HGS Sbjct: 314 GESGSFAGREKELSAAYKSVQKKLIRERILKDKVRIDGRGLADIRALSAEVEVLPRVHGS 373 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 ++F RG+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RRE Sbjct: 374 AIFERGETQIMGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRRE 433 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ P Sbjct: 434 IGHGALAERALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAP 493 Query: 459 VAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGLV DG + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 494 VAGIAMGLVSAEVDGVTQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPA 553 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 ++ AL QA+ RLHIL+ M++ + ++ F PRV + +P D+I VIG GK+I Sbjct: 554 EVLGSALTQAREARLHILDVMNEAIDVPD-EMSPFAPRVISVQVPVDKIGEVIGPKGKMI 612 Query: 575 RGIVEQTGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632 I ++TGA+++I+DDGT+ I ++ AE A + +PE+ + + G VVK Sbjct: 613 NQIQDETGAQISIEDDGTIYIGATDGPSAEAARAAINAIANPQMPEIGERFLGTVVKTTT 672 Query: 633 FGAFVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 FGAF+ +DGL+HIS+ + +R+ DV+ G V V+L + D RGK+ L Sbjct: 673 FGAFISLLPGKDGLLHISEVRKLVGGKRIDAVEDVLAVGQKVQVELKEIDPRGKLSLGAV 732 Query: 689 VVDQNT 694 + D ++ Sbjct: 733 LADDDS 738 >gi|318062386|ref|ZP_07981107.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. SA3_actG] gi|318078519|ref|ZP_07985851.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. SA3_actF] Length = 738 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V + + G KP I+ + +K AK + Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 256 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++ +L + I K R ++D +K +K++ F Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + VVR ++ K R+DGR +R ++A+V + R HGS+LF R Sbjct: 313 ---REKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489 Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL VK ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 490 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 668 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720 >gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL050PA2] Length = 733 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFFPLTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ + Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINS 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GPV G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M++ + +S ++ PR+ + IP D+I VIG GK+I I + TGA Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|254776111|ref|ZP_05217627.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium subsp. avium ATCC 25291] Length = 748 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E ++L+ +S K+ DFFPLTV+ +ER YA Sbjct: 13 FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 73 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183 ++ AASA+ L GLPF GP+ G +V I+G +V P +++ ++ D+ V+G + Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 192 Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAIS--------K 220 A++MVE EA +E VV G KP IE + K Sbjct: 193 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 248 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 A+ + P D D + ++ + ++L + I K R + D+LK ++++ + Sbjct: 249 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 306 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 E E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+L Sbjct: 307 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 365 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIG Sbjct: 366 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 425 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVA Sbjct: 426 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 485 Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 GIAMGLV D GD F+ L+DI G ED G MDFKVAGT +TA+Q+D Sbjct: 486 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 545 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI ++ AL QAK RL IL M++ + E ++ + PRV + +P D+I VI Sbjct: 546 KLDGIPSQVLAGALSQAKDARLIILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 604 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625 G GK+I I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G Sbjct: 605 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 664 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 VVK DFGAFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI Sbjct: 665 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 724 Query: 685 LSM 687 L + Sbjct: 725 LVL 727 >gi|302522241|ref|ZP_07274583.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78] gi|302431136|gb|EFL02952.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78] Length = 739 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 78 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227 A++MVE EA + + +V + + G KP I+ + +K AK + Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 257 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++ +L + I K R ++D +K +K++ F Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 313 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + VVR ++ K R+DGR +R ++A+V + R HGS+LF R Sbjct: 314 ---REKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 370 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 371 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 430 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 431 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 490 Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL VK ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 491 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 550 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 551 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 609 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 610 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 669 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 670 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721 >gi|295836212|ref|ZP_06823145.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74] gi|295825905|gb|EDY46178.2| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74] Length = 739 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 282/712 (39%), Positives = 420/712 (58%), Gaps = 45/712 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 78 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AAS + L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197 Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227 A++MVE EA + + +V + + G + KP I+ + K + Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 257 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283 PI +D +D + E ++ ++ +L + I K R ++D +K +K++ F Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 313 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E EI + + + VVR ++ K R+DGR +R ++A+V + R HGS+LF R Sbjct: 314 ---REKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 370 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 371 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 430 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIA Sbjct: 431 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 490 Query: 464 MGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ + ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 491 MGLISETHGGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 550 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I E Sbjct: 551 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 609 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA++ I+DDGT+ I ++ EAAR I SI + +PEV + Y G VVK FGAFV Sbjct: 610 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 669 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 670 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721 >gi|1588265|prf||2208281A 100RNP protein Length = 779 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 279/702 (39%), Positives = 407/702 (57%), Gaps = 60/702 (8%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 ++V+I + R + +ETG I RQ+ GAV T GET+V TV + DFFPL+VNYQ Sbjct: 76 YSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQ 135 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER A G+ GG+ +RE RP +NE+L+ R+IDR +R K + +ETQ++ V+ +D Sbjct: 136 ERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLH 195 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 P +++ AA A+ LS L PV G +V + G+Y++NP +E + S LDL V+GT Sbjct: 196 PPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTDS 255 Query: 184 AVLMVE-----------LEANQLSEDVV-------------------LDAIIFGHNECKP 213 A+LM+E LEA ++ +D V +DAI E Sbjct: 256 AILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELYK 315 Query: 214 VIEAIS--KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEK----YV 263 +E I+ +L + + K LEE++ ++ + V+ IPE YV Sbjct: 316 HVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLYV 375 Query: 264 RCKQIDDLKKKMVSYFSSEHSS----------WNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 ++ +++ H ++E ++ VF++ +K +R +++ R Sbjct: 376 DEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGRR 435 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372 DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++ Q +D+L G + Sbjct: 436 SDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDESK 495 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 F + Y+F P GE R+GAPSRREIGHG LA RA+ P+LP +FPYT+R+ S ITES Sbjct: 496 RFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITES 555 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486 +GSSSMA+VCG SLAL+DAGVP+ P+AGIAMG+V D +F +ILSDI+G ED Sbjct: 556 NGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDAS 615 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAG +TA QMD+K+GGI+ ++M AL QAK GR IL EMSK L L Sbjct: 616 GDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKTL 675 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605 + P + +M + P+++ +IG GGK +R I+E TG + ++ DDGTVKI + L +E Sbjct: 676 SIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLEK 735 Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGL 646 ++ MI ++T VP + IY+ +K + +GAFV R+G Sbjct: 736 SKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGF 777 >gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] Length = 992 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 272/701 (38%), Positives = 421/701 (60%), Gaps = 26/701 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E R + ETG+IAR ++G+V+ +T VL+TV ++ +DF PLTV+YQE+ Sbjct: 56 EFEVGSRVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKT-DSPRDFLPLTVDYQEKQ 114 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G IP Y+RRE P E E+L R+IDR IRPLF + +E Q++ +V+ D + P Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPD 174 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +++ A+SAALMLS +P+ GP+ ++ I GQ+V+NP +DE S L+L + T+D + Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241 M+++++ ++SE + A+ H E ++ +LA+ K+ ++ K K+ Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAIKYLDPQIRLAEKAGKQKKEYKLSMLSEKTLEKVT 294 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + I+ + K+ R + +D++ K + F E + + + ++ K Sbjct: 295 DLAATRIESVFTDPSY--GKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKK 352 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ M+ R+DGR + VR I + L HGS+LF RGDTQ + VTLG + Q Sbjct: 353 VVRSRMISDGFRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQ 412 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G + FM+HY+F P T EV + G +RRE+GHG LA +A+ VLP FPY Sbjct: 413 SLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPY 472 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474 T+RI SE+ SDGS+SMA+VCG S+ALMDAG+P+ VAG+++GL+ D D D+ Sbjct: 473 TVRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYR 532 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 I++DI G EDHLG MDFK+AGT +G+TA+Q+D+K GI +I+ +L+ A+ RL IL+ Sbjct: 533 IVTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDH 592 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + ++ R Q G ++PR+ D +R++IG G + R I E+TGA+++I D+GT+ Sbjct: 593 MERNINSPRAQDGAYSPRLATFKYTNDSLRSLIGPMGVLKRKIEEETGARLSI-DNGTLT 651 Query: 595 IASSSLAEIEAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 I + + +E A+E + R I V +YKG V + ++GAFV F G + GL+H+ Sbjct: 652 IVAKNQDVMEKAQEKVDFIIGREIV----VGGVYKGTVTSIKEYGAFVEFSGGQQGLLHM 707 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S+LS E V+K SDV+ G + ++ D RG IKLS K + Sbjct: 708 SELSHEPVSKVSDVLHIGQYITTMCIETDVRGNIKLSRKAM 748 >gi|184201241|ref|YP_001855448.1| polynucleotide phosphorylase/polyadenylase [Kocuria rhizophila DC2201] gi|226702657|sp|B2GKI3|PNP_KOCRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|183581471|dbj|BAG29942.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase [Kocuria rhizophila DC2201] Length = 751 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 285/720 (39%), Positives = 422/720 (58%), Gaps = 46/720 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ + E T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 YGKRVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F K +NE QV++ VM + + V Sbjct: 78 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQVVVTVMSIAPDEIYNTV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG--QYVLNPRLDE-DQGSLDLFVSG--- 180 ++ AAS + LSG+PF+GPV G ++ + NG Q++ P+ + + D+ V+G Sbjct: 138 AINAASMSTTLSGMPFQGPVGGVRMALMAEENGGHQWIAFPKHSQLENAVFDMAVAGRVV 197 Query: 181 -TQD-----AVLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKL-AKM 224 T+D A++MVE EA + +++ + + G KP I+A+ A + Sbjct: 198 TTKDGGQDVAIMMVEAEATDNAWELIKGQGAVAPSEELVAEGLEASKPFIKALCDAQADL 257 Query: 225 CAKE-PIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 A+ +D F ++ +Q ++ E + I K R D+L ++ Sbjct: 258 AARNRKPELDLPRFGGFGDDAAQAVEQFVGERMAQVYSIAGKQEREAATDELHHDTLAEL 317 Query: 280 SSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336 + E + EG E+ ++ + + VR +L KVR+DGR +R +SA+V +L R H Sbjct: 318 TGEGKPF-EGRADEVNGAYQALTKQTVRQRILKDKVRIDGRGLTDIRQLSAEVDVLPRVH 376 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 GS+LF RG+TQ + V TL + EQ +DSLS + ++ HYNF P +TGE R+G+P R Sbjct: 377 GSALFERGETQIMGVTTLNMLKMEQQIDSLSPVKHKRYIHHYNFPPYSTGETGRVGSPKR 436 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+LAL +AGVP+ Sbjct: 437 REIGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLALYNAGVPLR 496 Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 PVAGIAMGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI Sbjct: 497 APVAGIAMGLVSDTVDGEVQYAALTDILGAEDALGDMDFKVAGTREFVTAIQLDTKLDGI 556 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 +++ AL QA+ RL+IL+ ++ + ++ ++ EF PRV + +P +I VIG GK Sbjct: 557 PASVLASALTQAREARLYILDVLTSAI-DAPDEMSEFAPRVISVTVPVSKIGEVIGPKGK 615 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I E TG ++I+DDGTV I ++ EAAR I +I + VPEV + Y G VVK Sbjct: 616 MINQIQEDTGTDISIEDDGTVYIGATDGPSAEAARSAINAIANPQVPEVGERYLGTVVKT 675 Query: 631 MDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAFV +DGL+HIS++ +RV + DV+ G V V++ DDRGK+ L+ Sbjct: 676 TTFGAFVSLTPGKDGLLHISEMRQLNDDKRVNEVDDVLSVGQKVQVEITKVDDRGKLSLA 735 >gi|296171645|ref|ZP_06852859.1| polyribonucleotide nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894006|gb|EFG73769.1| polyribonucleotide nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 751 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 285/714 (39%), Positives = 423/714 (59%), Gaps = 45/714 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A E ++L+ ++ K+ DFFPLTV+ +ER YA Sbjct: 22 FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ ++ D V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTILSLDPNDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----A 184 ++ AASA+ +SGLPF GP+ G +V I+G +V P +++ ++ D+ V+G + A Sbjct: 142 AINAASASTQISGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDDDVA 201 Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKE 228 ++MVE EA +E VV + G KP I + +LA AK Sbjct: 202 IMMVEAEATDKVIELVEGGAQAPTETVVAE----GLEAAKPFINVLCTAQQELADAAAKP 257 Query: 229 PIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 V + F +E++ + + ++L + I K R + D+LK ++++ + E Sbjct: 258 --VGEYPTFPDYQEDVYYSVAAVATDELAKALTIGGKAERDARTDELKAEVLTRLA-ETY 314 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG Sbjct: 315 EGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERG 374 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG L Sbjct: 375 ETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 434 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ PVAGIAM Sbjct: 435 AERALLPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 494 Query: 465 GLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GLV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ GI + Sbjct: 495 GLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQV 554 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QAK RL IL M++ + ++ ++ + PRV + +P D+I VIG GK+I Sbjct: 555 LAGALAQAKDARLTILEVMAEAI-DAPDEMSPYAPRVTTIKVPVDKIGEVIGPKGKIINA 613 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E+TGA+++I+DDGTV + ++ +AA + I +I + +P V + + G VVK DFG Sbjct: 614 ITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVKTTDFG 673 Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 AFV RDGLVHIS+L +R+AK DVV GD + V++ D D RGKI L + Sbjct: 674 AFVSLLPGRDGLVHISKLGRGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 727 >gi|116669995|ref|YP_830928.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter sp. FB24] gi|187470967|sp|A0JUV8|PNP_ARTS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116610104|gb|ABK02828.1| Polyribonucleotide nucleotidyltransferase [Arthrobacter sp. FB24] Length = 746 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/713 (39%), Positives = 416/713 (58%), Gaps = 41/713 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + E T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQV----DYINGQYVLNPRLDEDQGSLDLFV-----SG 180 ++ A+S + LSGLPF GP+ G +V D Q+V P+ + + S+ V +G Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADEHGSQWVAFPKHSQLENSVFNMVVAGRVAG 197 Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAK 223 A++MVE EA S +++ + + G KP I+A+ ++ AK Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257 Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 + P+ +D +D + E + K I +K R D LK + S + + Sbjct: 258 PTVEFPVFLDYEDDAYAAVEAAAAEKLAAVFQ--IADKQERDAASDQLKDDVTSSLAGQF 315 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F + VVR +L ++R+DGR +R ++A+V +L R HGS++F R Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSLS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ VAGIA Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL ++ + ++ +L EF PRV + IP D+I VIG GK+I I E Sbjct: 555 ALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I +++ +AAR I +I + VPE+ + Y G VVK FGAF+ Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFI 673 Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS+L +RV DVV G + V++ DDRGK+ LS Sbjct: 674 SLTPGKDGLLHISELRKIAGGKRVDNVEDVVSVGQKIQVEITKIDDRGKLSLS 726 >gi|302537281|ref|ZP_07289623.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C] gi|302446176|gb|EFL17992.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C] Length = 739 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 285/714 (39%), Positives = 418/714 (58%), Gaps = 49/714 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ VM + + V+ Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATVMALNPDHLYDVI 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIKGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196 Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------- 228 A++MVE EA + + E + + G KP I+ + K A + Sbjct: 197 AIMMVEAEATEQTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQADLAAKAAKPEGE 256 Query: 229 -PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSS 281 P+ +D + ++ LE Q ++ +L + I K R ++D +K+ K++ F Sbjct: 257 FPVFLDYEQDVYAALE----QAVRGELAQALTIAGKQDREAELDRVKEIAAEKLLPAFEG 312 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 E EI + + + +VR ++ KVR+DGR +R ++A+V + R HGS+LF Sbjct: 313 -----REKEISAAYRSLTKALVRERVIKDKVRIDGRGLTDIRTLAAEVEAIPRVHGSALF 367 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGH Sbjct: 368 ERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGH 427 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAG Sbjct: 428 GALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 487 Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGL+ D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 488 IAMGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVL 547 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QA+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG GK+I I Sbjct: 548 AAALTQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQI 606 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E TGA++ I+DDGT+ I ++ EAAR I +I + +PEV + Y G VVK FGA Sbjct: 607 QEDTGAEITIEDDGTIYIGAADGPAAEAARSTINAIANPTMPEVGERYLGTVVKTTTFGA 666 Query: 636 FVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FV +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 667 FVSLMPGKDGLLHISQIRKLAGGKRVENVEDVLAVGTKVQVEIAEIDQRGKLSL 720 >gi|296129365|ref|YP_003636615.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas flavigena DSM 20109] gi|296021180|gb|ADG74416.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas flavigena DSM 20109] Length = 744 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 276/711 (38%), Positives = 427/711 (60%), Gaps = 42/711 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T++L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREGFDFFPLTVDVEERQYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R+IDR +RPLF K +NE QV++ V+ + + + V+ Sbjct: 78 AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183 ++ AAS + +SGLPF GPV ++ I+GQ+V PR E ++ + ++ V+G Sbjct: 138 AINAASISTQISGLPFSGPVGAVRIALIDGQWVAFPRYTERERATFEIVVAGRVVEGGDV 197 Query: 184 AVLMVELEANQLSEDVV--------LDAIIF-GHNECKPVIEAI----SKLAKMCAKE-- 228 A+ M+E EA + S +++ +A++ G KP I+A+ +LA AKE Sbjct: 198 AIAMIEAEAPEKSWNLIRNEGGVAPTEAVVAEGLEASKPFIKALVTAQMELAAQSAKETQ 257 Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 P D + ++ +E+ ++ + L+++ K R ++D++K ++ + +++ Sbjct: 258 TFPTFPDYQPDAYAAVEQAATERLSAALQIAG----KQERENRLDEIKAEVQAELAAQFE 313 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E E+ + + +Q +++R +L R+DGR +R +SA+V +L RTHGS+LF RG Sbjct: 314 G-REKEVSAAYRSVQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERG 372 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL EQ +D+L+ R +M HYNF P +TGE R+G+P RREIGHG L Sbjct: 373 ETQILGVTTLNMLRMEQQLDTLAPETRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 432 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RAI PVLP +FPY +R VSE S+GS+SM +VC ++L+L++AGVP+ PVAGIAM Sbjct: 433 AERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAM 492 Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 GLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ A Sbjct: 493 GLVSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGA 552 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QAK RL IL+ +++ + ++ F PRV + +P D+I VIG GK+I I E+ Sbjct: 553 LTQAKEARLAILDVIAEAIDVPD-EMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEE 611 Query: 581 TGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638 TGA ++I+DDGTV I ++ AE A + +PE+ + + G VVK FGAF+ Sbjct: 612 TGADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFIS 671 Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 672 LSPGKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSL 722 >gi|120403341|ref|YP_953170.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium vanbaalenii PYR-1] gi|187610302|sp|A1T7L4|PNP_MYCVP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119956159|gb|ABM13164.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 754 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/720 (39%), Positives = 426/720 (59%), Gaps = 40/720 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ E GR+A+Q+ GAV+A ET++L+ +S K+ DFFPLT++ +ER YA Sbjct: 22 FGTRTIRFEAGRLAQQAAGAVVAYLDDETMLLSATTASKSPKEHFDFFPLTIDVEERMYA 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ D + V+ Sbjct: 82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLDPKDLYDVL 141 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183 ++ AASA+ +SGLPF GPV G +V I+GQ+V P +++ ++ D+ V+G + Sbjct: 142 AINAASASTQISGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRKVGDDHK 201 Query: 184 --AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMC 225 A++MVE EA + ++V + G KP I + K Sbjct: 202 DVAIMMVEAEATENVIELVAGGAGAPTETVVAEGLEAAKPFIAVLCDAQAALAGAAGKET 261 Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 A+ P+ D D + ++ + E L + I K R + D++K ++++ + +++ Sbjct: 262 AEYPLFPDYGD--DVYYSVASVATEALSEALTIAGKNERNDRTDEIKVEVLNRLAEQYAG 319 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E EI + + + K+VR +L R+DGR +R +SA+V ++ R HGS+LF RG+ Sbjct: 320 -REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVVPRAHGSALFERGE 378 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL + Q +DSL +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 379 TQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 438 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMG Sbjct: 439 ERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 498 Query: 466 LVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 LV D + F+ L+DI G ED G MDFK AGT +TA+Q+D K+ GI ++ Sbjct: 499 LVSDDIEIDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVL 558 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QAK R+ IL M++ + ++ ++ + PR+ + +P D+I VIG GK+I I Sbjct: 559 AGALAQAKDARITILEVMAEAI-DTPDEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSI 617 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E+TGA ++I+DDGTV + +S+ +AA + I +I + +P+V + + G VVK DFGA Sbjct: 618 TEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFGA 677 Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 FV RDGLVHIS+L +R+ K DV K GD + V++ D D+RGKI L + + T Sbjct: 678 FVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVLVAEESET 737 >gi|152965434|ref|YP_001361218.1| polynucleotide phosphorylase/polyadenylase [Kineococcus radiotolerans SRS30216] gi|187610277|sp|A6W815|PNP_KINRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151359951|gb|ABS02954.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Kineococcus radiotolerans SRS30216] Length = 746 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 287/712 (40%), Positives = 420/712 (58%), Gaps = 40/712 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 + R ++ ETGR+A+Q+ G+ A Y GE+ +L+ +S KD DFFPLTV+ +ER+Y Sbjct: 18 FGTRTIRFETGRLAKQAAGSA-AVYLDGESFLLSATTAGKSPKDQFDFFPLTVDVEERSY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV+++VM + + V Sbjct: 77 AAGKIPGSFFRREGRPSTEAILTCRLIDRPLRPSFVKGLRNEVQVVVSVMALHPDDAYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 V++ AS + LSGLPF GP+ G ++ I+GQ+V PR E ++ D+ V+G Sbjct: 137 VAINVASLSTQLSGLPFSGPIGGVRIALIDGQWVAFPRYSELERAVFDMVVAGRVVTTAD 196 Query: 181 -TQD-AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEP 229 +QD A++MVE EA + S +++ D + G KP I + + A Sbjct: 197 GSQDVAIMMVEAEATEGSWNLIKDQGATAPTEEVVAAGLEAAKPFIAELVRAQAEVAATA 256 Query: 230 IVIDS--KDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 + F ++++ Q + E DL + I K R +ID++K+ + + + Sbjct: 257 AKPTAAFPTFPDYQDDVYQAVFEAASADLTAALQIGGKQDRETRIDEVKEAVKAQLADAF 316 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + E E+ + + +Q ++R +L VR+DGR +R +SA+V +L R HGS+LF R Sbjct: 317 AG-REKEVSAAYRSVQKALIRQRVLKDGVRIDGRGLADIRTLSAEVEVLPRVHGSALFER 375 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 376 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 435 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ VAGIA Sbjct: 436 LAERALVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAAVAGIA 495 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGL+ D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 496 MGLISDTVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPASVLAG 555 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ RLHIL+ M++ + ++ ++ PR+ + +P D+I VIG GK+I I E Sbjct: 556 ALTQARDARLHILDVMAEAI-DAPDEMSPTAPRIITVKVPVDKIGEVIGPKGKMINQIQE 614 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I + EAAR + +I + +PEV + Y G VVK FGAFV Sbjct: 615 DTGADISIEDDGTVFIGAVDGPSAEAARAAVNAIANPTMPEVGERYLGTVVKTTTFGAFV 674 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQL +RV DVV G V V++ + D RGK+ L Sbjct: 675 SLMPGKDGLLHISQLRKLSGGKRVDNVEDVVAVGQKVQVEIAEIDPRGKLSL 726 >gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 713 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 276/691 (39%), Positives = 414/691 (59%), Gaps = 80/691 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+TYA GKIPGGY++RE Sbjct: 37 KVAKQATGAVLMKQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKTYAAGKIPGGYVKRE 95 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 96 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 155 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E + S LDL+V+G +D +LM+E+ A Sbjct: 156 DIPMKAPVCGVRIGRIDGNFILNPNNEELKNSTLDLYVAGVKDELLMIEMRALPDQKENE 215 Query: 193 -------------------NQLSEDVVLDA-------IIFGHNECKPVIEAISKLAKMCA 226 N+L+ED +L+A I+ G N K K +++ Sbjct: 216 IFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAILNGSNAYKEAFSKHRKNSQIEL 275 Query: 227 K------EPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 K E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 276 KNEIEYPEILAFVENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 323 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E I++ I+ K++R +LDK R DGR VR IS + +L HGS Sbjct: 324 IAK--DWSEESILNTLAKIKRKLIREQILDKGKRADGRSLNEVRPISIETNILPNAHGSC 381 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 382 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPINERFMVNYNFPGFSVGEASPIKAPG 439 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 440 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 497 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + IL+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 498 LKLVAGVAMGLIFEDNKHAILTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 557 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 558 TLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 616 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-----------DVP--EVNK 621 I+E+ G +++D + G VKIA + +I+AA++ I +IT D+ E+ + Sbjct: 617 EIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKNSKDISGFELGQ 676 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 ++G V K+ FGAFV DGL+H S++ Sbjct: 677 EFQGIVKKIAPFGAFVELKNGVDGLLHNSKI 707 >gi|54025857|ref|YP_120099.1| polynucleotide phosphorylase/polyadenylase [Nocardia farcinica IFM 10152] gi|81374135|sp|Q5YSV6|PNP_NOCFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|54017365|dbj|BAD58735.1| putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Nocardia farcinica IFM 10152] Length = 764 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 292/729 (40%), Positives = 428/729 (58%), Gaps = 46/729 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A ET++L+ ++ KD DFFPLTV+ +ER YA Sbjct: 30 YGTRTVRFETGRLARQAAGSVVAYLDDETMLLSATTAGKTPKDQFDFFPLTVDVEERMYA 89 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ D + VV Sbjct: 90 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVLSLDPKDLYDVV 149 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---------NGQYVLNPRLDEDQGS-LDLFVS 179 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ +G+ D+ V+ Sbjct: 150 AINAASASTQIAGLPFSGPVGGVRVALIPDQGANSAGGGQWVAFPTVEQLEGAVFDMVVA 209 Query: 180 G----TQD-AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISK----LA 222 G + D A++MVE EA + ++V +A++ G KP I + + LA Sbjct: 210 GRVVESGDVAIMMVEAEATEKVIELVEGGAQAPTEAVVAEGLEAAKPFIARLCRAQQDLA 269 Query: 223 KMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 ++ AK E + + E + + +L + I K R ++ID++K ++ + Sbjct: 270 ELAAKPTEEFPLFPPYGPDVYEAVEGAAEAELGEALSIAGKQEREEKIDEIKLAVLDRLA 329 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 E + E E+ + F + K+VR +L R+DGR +R +SA+V ++ R HGS+L Sbjct: 330 -EQFAGREKELGAAFRSVTKKLVRQRILTDGFRIDGRGLADIRALSAEVAVVPRAHGSAL 388 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P RREIG Sbjct: 389 FERGETQILGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIG 448 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVA Sbjct: 449 HGALAERALIPVLPSQEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVA 508 Query: 461 GIAMGLVKD------GDD---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 GIAMGLV D G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 509 GIAMGLVSDTVTNDKGEQEVRYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDG 568 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QA R IL+ M++ ++ ++ + PRV + IP D+I VIG G Sbjct: 569 IPSQVLAGALSQAHDARTTILDVMAEAIATPD-EMSPYAPRVTAIKIPVDKIGEVIGPKG 627 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629 KVI I E TGA ++I+DDGTV + ++ A+ + +P+V + + G VVK Sbjct: 628 KVINQITEDTGANISIEDDGTVFVGATDGPSAQAAIDAINAIANPQLPKVGERFLGTVVK 687 Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 FGAFV RDGLVHIS+L +RVAK DVV GD + V++ D D+RGKI S+ Sbjct: 688 TTAFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVNVGDKLRVEIADIDNRGKI--SLV 745 Query: 689 VVDQNTGKP 697 VD+N +P Sbjct: 746 PVDENADEP 754 >gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 997 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/693 (39%), Positives = 410/693 (59%), Gaps = 14/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E R + ETG+IAR ++GAV+ + ET VL+TV + +DF PLTV+YQE+ Sbjct: 61 EFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKG-DAARDFLPLTVDYQEKH 119 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 +A G IP ++RRE P E E+L R+IDR IRPLF + +E QV+ +V+ D + P Sbjct: 120 FAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 179 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V++ A SAALMLS +P+ GP+ ++ I GQ+++NP +DE L+L + T+D L Sbjct: 180 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTL 239 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M++++A ++SE + A+ H E +E +LA K S + E + Sbjct: 240 MIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVR 299 Query: 247 MIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + E + F K+ R + +D + + + E + + V + ++ +VV Sbjct: 300 NLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVV 359 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + +R+DGR VR + + G L HGSSLF RGDTQ + VTLG D Q + Sbjct: 360 RRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRL 419 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 DSL G FM+HY+F P + EV + +RRE+GHG LA +A+ VLP +FPYT+ Sbjct: 420 DSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTV 479 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIIL 476 RI SE+ SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D D+ IL Sbjct: 480 RINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRIL 539 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ L+ A RGRL IL+ M Sbjct: 540 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRME 599 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++ R Q +PR+ + D +R ++G G + R I E+TGA++++ DGT+ + Sbjct: 600 QEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISV-SDGTLTVV 658 Query: 597 SSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + + ++ +E + I E+ IYKG V V ++GAFV F G + GL+HIS+LS E Sbjct: 659 AKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHE 718 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V + SDVV G + + + D RG IKLS+K Sbjct: 719 PVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLK 751 >gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL037PA2] gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes HL037PA3] Length = 735 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/707 (38%), Positives = 420/707 (59%), Gaps = 44/707 (6%) Query: 16 LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 ++ E G +A+Q+DG+ A Y G+T++L+ ++ +D DFF LTV+ +ER YA G+I Sbjct: 23 VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFLLTVDVEERMYAAGRI 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 PG + RRE RP+E IL R+IDR +RP F K +NE QV++ VM + VV++ A Sbjct: 82 PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDVVAINA 141 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187 AS + L+GLPF GP+ G ++ I+ Q+V P +D+ + + D+ V+G A++M Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201 Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231 VE E+ + +V + + G KP I+ + +KL K P+ Sbjct: 202 VEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261 Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 D +D ++ +EE+ + + +++ K R + +LK ++ + + E E Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 E+ F+ + K+VR +LD+ VR+DGR +R +SA+VG++ R HGS+LF RG+TQ + Sbjct: 317 EVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL + EQ +D+LS +M +YN P +TGE R+G+P RREIGHG LA RA+ Sbjct: 377 GVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ VAGIAMGL+ + Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496 Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL+QA Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R IL M+ + +S ++ PR+ + IP D+I VIG GK+I I + TG Sbjct: 557 KEARTAILEVMNDAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGTN 615 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGT+ I + + E+AR MI +I + +PEV + Y G VVK FGAFV Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS++ +RV DV+ G + V++ + DDRGK+ L Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722 >gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 719 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/693 (39%), Positives = 412/693 (59%), Gaps = 82/693 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDSQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 ILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 IVE+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + ++G V K+ FGAFV DGL+H S++ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 690 >gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera] Length = 905 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 275/693 (39%), Positives = 410/693 (59%), Gaps = 14/693 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E R + ETG+IAR ++GAV+ + ET VL+TV + +DF PLTV+YQE+ Sbjct: 10 EFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKG-DAARDFLPLTVDYQEKH 68 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 +A G IP ++RRE P E E+L R+IDR IRPLF + +E QV+ +V+ D + P Sbjct: 69 FAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V++ A SAALMLS +P+ GP+ ++ I GQ+++NP +DE L+L + T+D L Sbjct: 129 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTL 188 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246 M++++A ++SE + A+ H E +E +LA K S + E + Sbjct: 189 MIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVR 248 Query: 247 MIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + E + F K+ R + +D + + + E + + V + ++ +VV Sbjct: 249 NLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVV 308 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++ + +R+DGR VR + + G L HGSSLF RGDTQ + VTLG D Q + Sbjct: 309 RRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRL 368 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 DSL G FM+HY+F P + EV + +RRE+GHG LA +A+ VLP +FPYT+ Sbjct: 369 DSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTV 428 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIIL 476 RI SE+ SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D D+ IL Sbjct: 429 RINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRIL 488 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ L+ A RGRL IL+ M Sbjct: 489 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRME 548 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 + ++ R Q +PR+ + D +R ++G G + R I E+TGA++++ DGT+ + Sbjct: 549 QEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISV-SDGTLTVV 607 Query: 597 SSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 + + + ++ +E + I E+ IYKG V V ++GAFV F G + GL+HIS+LS E Sbjct: 608 AKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V + SDVV G + + + D RG IKLS+K Sbjct: 668 PVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLK 700 >gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 991 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 271/697 (38%), Positives = 418/697 (59%), Gaps = 18/697 (2%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E R + ETG+IAR ++G+V+ ET VL+TV ++ +DF PLTV+YQE+ Sbjct: 56 EFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKT-DSPRDFLPLTVDYQEKQ 114 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G IP Y+RRE P E E+L R+IDR IRPLF + +E Q++ +V+ D + P Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPD 174 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 +++ A+SAALMLS +P+ GP+ ++ I GQ+V+NP +DE S L+L + T+D + Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241 M+++++ ++SE + A+ H E ++ +LA+ K+ ++ K K+ Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVA 294 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 + + I+ + K+ R + +D++ K + F E + + + ++ K Sbjct: 295 DLAATRIESVFTDPSY--GKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKK 352 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 VVR+ M+ R+DGR + VR I + L HGS+LF RGDTQ + VTLG + Q Sbjct: 353 VVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQ 412 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DSL G + FM+HY+F P T EV + G +RRE+GHG LA +A+ VLP FPY Sbjct: 413 SLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPY 472 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474 T+RI SE+ SDGS+SMA+VCG S+ALMDAG+P+ VAG+++GL+ D D D+ Sbjct: 473 TIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYR 532 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 I++DI G EDHLG MDFK+AGT G+TA+Q+D+K GI +I+ +L+ A+ RL IL+ Sbjct: 533 IVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDH 592 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + ++ R Q G ++PR+ + D +R +IG G + R I +TGA+++I D+GT+ Sbjct: 593 MERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI-DNGTLT 651 Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + +E A+E + I V +YKG V + ++GAFV F G + GL+H+S+LS Sbjct: 652 IVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELS 711 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 E V+K SDV+ G + ++ D RG IKLS K + Sbjct: 712 HEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKAL 748 >gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 748 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 286/718 (39%), Positives = 421/718 (58%), Gaps = 44/718 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R L+ ETG++ARQ+DG+V TY +T++LAT ++G DFFPLTV+ +ER Sbjct: 28 DFGTRTLRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 86 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV++ VM D E Sbjct: 87 YAAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYD 146 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV--- 178 VV++ ASAA LSGLP G V G ++ I GQ+V P ++ + +L V Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206 Query: 179 ----SGTQD--AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISK 220 G +D A++MVE A + + D + G KP I EA + Sbjct: 207 RIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIKTLCEAQNG 266 Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274 LA+ AKE P+ D F+ +E+ ++ +++ L + + ++ +++K Sbjct: 267 LAERAAKETQEFPLFPAYGDDVFAAVEKAAAKKLEKLLTIPGKQERDDATNEYMEQVEEK 326 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 ++ F + +I + + ++VR +L + R+DGR +RD+S +V L+ R Sbjct: 327 LLDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPR 386 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGSSLF RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSP 446 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L +AGVP Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506 Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 + PVAGIAMGL V + F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ Sbjct: 507 LKAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLD 566 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI ++ AL+QA+ R IL M++V+ ++ ++ P++ + IP ++I +IG Sbjct: 567 GIPSKVLAQALEQARDARSTILETMAEVI-DTPDEMSGLAPKITSVKIPVNKIGELIGPK 625 Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628 GK I I E+TGA V+I+DDGTV +++++ +AA + + SI + +P+V + + G VV Sbjct: 626 GKTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVV 685 Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 K + FGAFV RDGL+HIS L ER+ K DV+ GD V V++ D D+RGKI L Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743 >gi|229490937|ref|ZP_04384772.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis SK121] gi|229322327|gb|EEN88113.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis SK121] Length = 756 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 296/717 (41%), Positives = 423/717 (58%), Gaps = 48/717 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM + + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFV---- 178 ++ AASA+ ++GLPF GPV G +V I GQ+V P +D+ + D+ V Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSDENKTGQWVAFPTVDQLENAVFDMVVAGRV 204 Query: 179 -SGTQD----AVLMVELEA--NQLSE-----DVVLDAIIF-GHNECKPVIEAI------- 218 SG+ D A++MVE EA N +++ +AI+ G KP I + Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264 Query: 219 -SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 SK AK P+ +D F+ +E S E L + I K R + D++K ++ Sbjct: 265 ASKAAKPTGDYPVFPAYQDDVFAAVEAAAS----EKLNAALTIAGKQERDDKTDEVKVEV 320 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + + E E+ + F + K+VR +L + R+DGR +R +SA+V ++ R Sbjct: 321 LEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRA 379 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P Sbjct: 380 HGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPK 439 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ Sbjct: 440 RREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPL 499 Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 500 RAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 559 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK R IL M++ + ++ ++ F PRV + +P D+I VIG G Sbjct: 560 IPSQVLAGALSQAKDARTTILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKG 618 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I EQTGA ++I+DDGTV + ++ +AA +MI +I + +P+V + + G VVK Sbjct: 619 KMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVK 678 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L S +R+AK DVV G + V++ D D RGKI L Sbjct: 679 TTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735 >gi|226306131|ref|YP_002766091.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase [Rhodococcus erythropolis PR4] gi|257096704|sp|C0ZYB7|PNP_RHOE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226185248|dbj|BAH33352.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase [Rhodococcus erythropolis PR4] Length = 756 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 296/717 (41%), Positives = 423/717 (58%), Gaps = 48/717 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM + + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFV---- 178 ++ AASA+ ++GLPF GPV G +V I GQ+V P +D+ + D+ V Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSEDNKAGQWVAFPTVDQLENAVFDMVVAGRV 204 Query: 179 -SGTQD----AVLMVELEA--NQLSE-----DVVLDAIIF-GHNECKPVIEAI------- 218 SG+ D A++MVE EA N +++ +AI+ G KP I + Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264 Query: 219 -SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 SK AK P+ +D F+ +E S E L + I K R + D++K ++ Sbjct: 265 ASKAAKPTGDYPVFPAYQDDVFAAVEAAAS----EKLNAALTIAGKQERDDKTDEVKVEV 320 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 + + E E+ + F + K+VR +L + R+DGR +R +SA+V ++ R Sbjct: 321 LEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRA 379 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGS+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P Sbjct: 380 HGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPK 439 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ Sbjct: 440 RREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPL 499 Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ G Sbjct: 500 RAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 559 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL QAK R IL M++ + ++ ++ F PRV + +P D+I VIG G Sbjct: 560 IPSQVLAGALSQAKDARTTILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKG 618 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I EQTGA ++I+DDGTV + ++ +AA +MI +I + +P+V + + G VVK Sbjct: 619 KMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVK 678 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L S +R+AK DVV G + V++ D D RGKI L Sbjct: 679 TTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735 >gi|296127904|ref|YP_003635154.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas flavigena DSM 20109] gi|296019719|gb|ADG72955.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas flavigena DSM 20109] Length = 791 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 284/724 (39%), Positives = 428/724 (59%), Gaps = 44/724 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T++L+ + ++ DFFPLTV+ +ER YA Sbjct: 56 FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREAFDFFPLTVDVEERQYA 115 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ + IL R+IDR +RPLF K +NE QV++ V+ + + + V+ Sbjct: 116 AGKIPGAFFRREGRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 175 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AAS + LSGLPF GPV ++ ++GQ+V PR E ++ + D+ V+G A Sbjct: 176 AINAASISTQLSGLPFSGPVAATRLALVDGQWVAFPRYSERERSTFDIVVAGRVVGDDVA 235 Query: 185 VLMVELEANQ-------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228 + M+E +A + +E+VV + K ++EA +LA AKE Sbjct: 236 IAMIEADAPENAWNLIHGGGGTAPTEEVVAQGLEASKPFIKVLVEAQQQLAAQAAKETQT 295 Query: 229 -PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 P D + F+ +E+ S+ + L+++ K R ++D++K ++ +++ Sbjct: 296 FPTFPDYQPDAFAAVEQAASERLSAALQIAG----KQERENRLDEIKGEVAGELAAQFEG 351 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E EI + + +Q +++R +L R+DGR +R +SA+V +L RTHGS+LF RG+ Sbjct: 352 -REKEISAAYRSLQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGE 410 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL EQ +DSLS R +M HYNF P +TGE R+G+P RREIGHG LA Sbjct: 411 TQILGVTTLNMLRMEQQIDSLSPETRKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 470 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RAI PVLP +FPY +R VSE S+GS+SM +VC ++L+L++AGVP+ PVAGIAMG Sbjct: 471 ERAIVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMG 530 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 LV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Sbjct: 531 LVSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGAL 590 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 QAK RL IL+ +++ + ++ F PRV + +P D+I VIG GK+I I E+T Sbjct: 591 TQAKEARLAILDVIAEAIDVPD-EMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEET 649 Query: 582 GAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGTV I ++ AE A + +PE+ + + G VVK FGAF+ Sbjct: 650 GADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFISL 709 Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD--QN 693 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L V+D Q Sbjct: 710 SPGKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSLH-AVLDEAQT 768 Query: 694 TGKP 697 G P Sbjct: 769 EGDP 772 >gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] Length = 731 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 284/729 (38%), Positives = 424/729 (58%), Gaps = 80/729 (10%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL TVVLATV + + + +DF PLTV Y E+TYA G+IPGGY++RE Sbjct: 18 KVAKQASGAVLLRVKNTVVLATVAREDT-QVSEDFLPLTVQYIEKTYAAGRIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P + E L SR+IDRS+RPLF K Y TQ+++ V+ D E VV++ AAS AL LS Sbjct: 77 TKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P PV G +V YI+ ++V+NP E + S LDL+V+G +D +LM+E+ + Sbjct: 137 DIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIPTEKDEI 196 Query: 193 ----------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230 N+ SED++++AI A + KE Sbjct: 197 VPIALDPMMDPNLSGVIAMQDMNEFSEDLIVEAIAEAGKAILRASNAYEEAFSKHKKEDA 256 Query: 231 VIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 ++ K ++E E +++ K D++ + K R ++ + K++++ ++ Sbjct: 257 QLELK--PEIENESVAVYLNEFYKNDVKAAINQMAKSERASELTKIAKQILTDEVAQKEG 314 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 W E + +V + K+VR ++++ VR DGR+ + VR IS + +L HGS LF RG Sbjct: 315 WEEEVVSNVLAKFKKKIVREQIINEGVRADGRELKEVRPISIETNILPNAHGSCLFTRGQ 374 Query: 346 TQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 TQA+VV TLGT D Q D L+ G + FM +YNF + GE S + AP RRE+GHG Sbjct: 375 TQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGN 434 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA+RA+ P + + PYT+R+VSEI ES+GSSSMA+VCG SLAL AGV K VAG+A Sbjct: 435 LAKRALAPSIDVNS--PYTIRLVSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVA 492 Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 MGL+ +GD +L+DI G EDH G MDFKVAG+ GITA+QMD+K+GGIS +++ AL Q Sbjct: 493 MGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLDVLKEALLQ 552 Query: 524 AKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 A+ GRLHILN M K + + + E P++E+ ++ P +I ++IG GK I+ I+E+ Sbjct: 553 AREGRLHILNLMEK--ANENISVNEDILPKLELFSVDPGKIVDIIGQAGKTIKEIIEKFD 610 Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSITD--------------------VPEVN- 620 +++D + G VKIA + + ++AA++ I I PE N Sbjct: 611 VAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDNGKGFGGKRGGKDGKPHKTPEFNI 670 Query: 621 -KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 ++G+V V++FGAF+ G DGL+HIS++ T +K GD V VK+ + Sbjct: 671 GDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP--------LKAGDKVKVKI--SEQ 720 Query: 680 RG-KIKLSM 687 +G KI LS+ Sbjct: 721 KGHKISLSL 729 >gi|11514054|pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase Gpsi Enzyme Length = 757 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 280/708 (39%), Positives = 415/708 (58%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 34 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 93 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 94 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 153 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D+ V+G +D Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 213 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227 A++MVE EA + + +V D + G + KP I+ + K + Sbjct: 214 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + E +S ++ +L + I K R ++D +K E Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA R Sbjct: 391 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 510 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ M + + ++ ++ PR+ + IP D+I VIG ++I I E TGA Sbjct: 571 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGA 629 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I I + PEV + G VVK FGAFV Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737 >gi|325962822|ref|YP_004240728.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Arthrobacter phenanthrenivorans Sphe3] gi|323468909|gb|ADX72594.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Arthrobacter phenanthrenivorans Sphe3] Length = 767 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 278/715 (38%), Positives = 422/715 (59%), Gaps = 45/715 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + + T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 32 FGKRVIRFETGRLAKQAAGAAMVYIDDDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 91 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 92 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 151 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG-QYVLNPRLDEDQGSLDLFV-----SG 180 ++ A+S + LSGLPF GP+ G +V + NG Q+V P+ + + S+ V +G Sbjct: 152 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRIAG 211 Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223 A++MVE EA S +++ + + G KP I+A+ + K Sbjct: 212 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 271 Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 + P+ +D +D ++ +E + + +++ +K R D LK ++ + + Sbjct: 272 PTVEFPVFLDYEDDVYAAVESAAADKLAAVFQIA----DKQERDNASDALKDEVTASLAG 327 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 + E E+ + F + VVR +L ++R+DGR +R ++A+V +L R HGS++F Sbjct: 328 QFEG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIF 386 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL + EQ +DSLS + +M +YNF P +TGE R+G+P RREIGH Sbjct: 387 ERGETQIMGVTTLNMLKMEQQIDSLSPVKTKRYMHNYNFPPYSTGETGRVGSPKRREIGH 446 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ VAG Sbjct: 447 GALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAG 506 Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 507 IAMGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVL 566 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL+QA+ RLHIL ++ + ++ +L EF PRV + IP D+I VIG GK+I I Sbjct: 567 AAALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQI 625 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E TGA ++I+DDGTV I +++ EAAR I +I + VPE+ + Y G VVK FGA Sbjct: 626 QEDTGADISIEDDGTVYIGATNGPSAEAARSAINAIANPQVPEIGERYLGTVVKTTTFGA 685 Query: 636 FVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FV +DGL+HIS+L + +RV DVV G V V++ DDRGK+ L+ Sbjct: 686 FVSLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLA 740 >gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 719 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 274/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + LL HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNLLPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSIDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + F +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDSKFAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA + +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 719 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 274/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+ + AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMGLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDSQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 ILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 IVE+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified eubacterium SCB49] gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified eubacterium SCB49] Length = 739 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/696 (38%), Positives = 429/696 (61%), Gaps = 25/696 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+ G+V+ G+ ++L TVV + KD F PLTV+Y+E+ A G+ Sbjct: 15 GREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLPLTVDYREKFAAAGR 73 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE+RP++ E+L R++DR +RPLF K Y ETQV+I +M HD + P ++ + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKNYSAETQVMIQLMSHDDDVMPDAMAGL 133 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191 AASAA+ LS PFE + A+V ++G++++NP R ++ +D+ + + D+V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQMIK 249 +++SE+ +++AI F H K I+A +LA K+ + +++ + +EE+ + + Sbjct: 194 MDEISEEEMIEAIKFAHEAIKVQIDAQLRLADAVGKKEV----REYEEAGDDEELVKRVH 249 Query: 250 EDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + + K KQ +K+++ F+ E G + + + VR Sbjct: 250 DLAYDKVYAVAKAGSTKQERTAAFAAIKEEVKETFTEEELEEYGGLVSEYYRKAEKAAVR 309 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + +++ +R+DGR ++ VRDI ++ L HGS++F RG+TQA+ VTLGT D +D Sbjct: 310 DLTVNEGLRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKID 369 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 S +F +HYNF P TGE + SRRE+GHG LA+R + ++P+ PYT+R Sbjct: 370 MPSYEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPEDC--PYTVR 427 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482 +VSE+ ES+GSSSMATVC ++A+MDAG+ ++KPV+GIAMGL+ D + + +L+DI GD Sbjct: 428 VVSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAVLTDILGD 487 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED+LG MDFKV GT GITA QMD+K+ G+S I+V AL+QA+ GRLHIL ++ ++ Sbjct: 488 EDYLGDMDFKVTGTADGITACQMDIKVKGLSYEILVSALKQARDGRLHILEKIVATIATP 547 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597 R + ++ P++ + I + I +IG GGKVI+ + ++TG + I++D G V+I Sbjct: 548 REDVKDYAPKMVGVRIANEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILG 607 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655 + I+A I SIT P V Y+ +V+K++DFGA V + A + L+H+S+L+ E Sbjct: 608 TGQEGIDAVLAKIDSITFKPVVGSAYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 R SDVV GD VK D R K K+S K + Sbjct: 668 RTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAL 703 >gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] Length = 727 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/722 (39%), Positives = 420/722 (58%), Gaps = 56/722 (7%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + V IE R G +ARQ++G+ G++V+LATVV D + DF PLTV Y Sbjct: 3 YDVNIELENRVEDYSFGDVARQANGSAWLKSGDSVILATVVIDETEIVKDDFLPLTVQYI 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V ++ Sbjct: 63 EKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSAGSDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AASAAL S + V + ++G+ VLNP L + + +LDL++SGT+D Sbjct: 123 DLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGTKD 182 Query: 184 AVLMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--- 235 +LM+E+ + Q+ E+ ++D +I ++ + K + E I I K Sbjct: 183 DLLMIEMRSFGSNETQIEENYIIDPMIDPALSMPSIL--VHKSNAIAEDELIKIFEKTQN 240 Query: 236 ----DFSKLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSS 285 +K EE KE + + C + Y+R + D+ M SE S+ Sbjct: 241 ALFASNTKYEEAFGDYKKETVAIECKAHVINTEMQTYIRDNHMSDIAAAMNQMAKSERST 300 Query: 286 ---------------WNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 W++ E + E ++ + VR+ +L+++VR DGR VR IS Sbjct: 301 ALRQLRKNIIKTKTEWSDVEQEVSLKDAIESVKKEQVRSQILNERVRADGRALTEVRPIS 360 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCA 384 +L + H S LF RG+TQA+VV+T+G +D Q +SL+ GTQ +FM+HYNF + Sbjct: 361 ISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGTQNENFMVHYNFPGFS 420 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 GE S + RRE+GHG LA+RA+ P++ Q T+R+VSEI ES+GSSSMATVCG Sbjct: 421 VGEASPIMGTKRRELGHGNLAKRALEPIVDLDGQ---TVRLVSEILESNGSSSMATVCGG 477 Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504 +AL A + S VAGIAMG+V DGD + ILSDI G EDH G MDFKV G+ GITAMQ Sbjct: 478 YMALRAADIDTSDTVAGIAMGMVSDGDKYAILSDIMGLEDHDGDMDFKVTGSKDGITAMQ 537 Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQI 563 MD+K+GGIS +I+ AL QAK GR HI++ M + +E +++ + P + I P I Sbjct: 538 MDIKLGGISLDILKEALYQAKDGRSHIIDIM--IDAEQKIEFNDGVLPSTDFFHIDPSVI 595 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 VIG GKVIR I+E+ ++ID DG VK+ + + + ARE I I + P++ KI Sbjct: 596 GEVIGQAGKVIREIIEKFEVAIDIDKKDGKVKVTGKNKSAVLGAREHIEGIANSPKIEKI 655 Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 Y+G V K++DFGAF+ DGL+HIS++S +RV K SDVV EGD + V++L Sbjct: 656 KYQVGDKYEGVVKKIVDFGAFIGLPDGTDGLIHISKISDQRVEKVSDVVSEGDKIMVEIL 715 Query: 676 DF 677 +F Sbjct: 716 EF 717 >gi|256832257|ref|YP_003160984.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Jonesia denitrificans DSM 20603] gi|256685788|gb|ACV08681.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Jonesia denitrificans DSM 20603] Length = 735 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 285/715 (39%), Positives = 413/715 (57%), Gaps = 37/715 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ A G+T++L+T + KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLARQAAGSACAYLDGDTMLLSTTAVGKHPKDQFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ + + V+ Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVKGLRNEVQVVITVLSIHPDEAYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGT----QDA 184 ++ AAS + LSGLP+ GPV G +V I+ Q+V P+ D+++ D+ VSG A Sbjct: 138 AINAASMSTQLSGLPYSGPVGGVRVALIDDQWVAFPKHSDKERAVFDMVVSGRIVGDDVA 197 Query: 185 VLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAKMCAK 227 ++MVE EA + S ++V + + G KP I A+ +K AK + Sbjct: 198 IMMVEAEATENSWNLVKNQGATAPTEGVVAEGLEAAKPFIRALCEAQIELAAKSAKPQME 257 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + E + +DLR + I +K R + D++K ++ + E Sbjct: 258 FPLFLDYQD--DVYEAVKNAATDDLRTALTIADKQERENRQDEIKDATLASLA-EQFEGR 314 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 + EI + + +VR +L VR+DGR +R +SA+V ++ R HGS+LF RG+TQ Sbjct: 315 DKEISAAIRSLTKSLVRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSALFERGETQ 374 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + + TL + EQ +DSL R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 375 IMGITTLNMLKMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL+ Sbjct: 435 ALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI 494 Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Q Sbjct: 495 SDTVDGETRYAALTDILGAEDAYGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQ 554 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ R IL+ + + + + + PRV + +P D+I VIG GK+I I E TGA Sbjct: 555 ARDARYTILDVIEEAIDQPD-DMSPHAPRVIAVQVPVDKIGEVIGPKGKMINQIQEDTGA 613 Query: 584 KVNIDDDGTVKI--ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 + I+DDGTV I A + AE A + VPEV + + G VVK FGAFV Sbjct: 614 DITIEDDGTVYIGAADGTSAEAARAAINAIANPHVPEVGERFVGTVVKTTTFGAFVSLTP 673 Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +DGL+HISQ+ RV DVV G + V++ + D RGK+ L V D+ Sbjct: 674 GKDGLLHISQIRRLVGGRRVENVDDVVSVGQKLQVEIAEIDPRGKLSLHAVVDDE 728 >gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis DSM 15436] gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis DSM 15436] Length = 782 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 282/714 (39%), Positives = 421/714 (58%), Gaps = 48/714 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETGR+ARQ+ G+ +A ET +L+ + KD DFFPLTV+ +ER Y Sbjct: 18 KFGKRVIRFETGRLARQAAGSAMAYLDDETAILSATTVGKHPKDQFDFFPLTVDVEERQY 77 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP IL R++DR +RP F K +NE QV+ V+ + + V Sbjct: 78 AAGKIPGSFFRREGRPGTEAILACRLMDRPLRPAFVKGLRNEVQVVGTVLAIHPDDAYDV 137 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QD 183 +++ AAS + ++GLPF GP+ G ++ I+GQ+V PR E ++ + ++ V+G Sbjct: 138 LAINAASMSTQIAGLPFSGPIGGTRLALIDGQWVAFPRYSEMERSTFNIVVAGRVVGDDV 197 Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK 227 A++MVE +E+VV D G KP+I EA ++AK +K Sbjct: 198 AIMMVEAGGGDDMVDLMAAGGTVPTEEVVAD----GLEAAKPIIRQLCEAQLEVAKHASK 253 Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 E P+ D D ++ +E+ ++ + E + ++ +P R +ID++++ M++ Sbjct: 254 ETVEFPLYFDYTDEQYAAVEKAVTADLSEAITIAAKLP----REARIDEIQEAMLASLEE 309 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 E E ++ + F I+ ++R +L VR+DGR +R +SA+V +L R HGS+LF Sbjct: 310 EFPE-QEKDLKAAFRSIEKSLIRNRVLRDGVRIDGRKPTDIRSLSAEVEVLPRVHGSALF 368 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL EQ +D+LS +M YNF P +TGE R+G+P RREIGH Sbjct: 369 QRGETQILGVTTLNMLRMEQQLDNLSPVTAKRYMHQYNFPPFSTGETGRVGSPKRREIGH 428 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L+ AGVP+ PVAG Sbjct: 429 GALAERALVPVIPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLQAGVPLRAPVAG 488 Query: 462 IAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGL+ DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 489 IAMGLMTGEVDGVQKAVTLTDILGIEDGFGDMDFKVAGTREYITALQLDTKLDGIDSEVL 548 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QA+ R IL+ +++ +SE ++ ++ PR+ + IP D+I VIG GK+I I Sbjct: 549 AGALAQARDARFAILDLINQAISEPD-EMSKYAPRIISVQIPVDKIGEVIGPKGKMINQI 607 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E TGA++ I+DDGTV I + + EAAR M+ +I + +PEV + Y G VVK FGA Sbjct: 608 QEDTGAELTIEDDGTVYIGAETGEAAEAARAMVNAIANPQLPEVGERYVGTVVKTTSFGA 667 Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FV +DGL+HISQ + +R+ DV+ G V V++ + D RGK+ L Sbjct: 668 FVSLTPGKDGLLHISQVRRLVGGKRIESVEDVLGVGQQVEVEIAEIDARGKLSL 721 >gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 785 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 291/726 (40%), Positives = 425/726 (58%), Gaps = 50/726 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ LA + T VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 19 FGKRTIRFETGRLARQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERAYA 78 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ V+ D + + V+ Sbjct: 79 AGRIPGSFFRREGRPGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG---TQD-- 183 ++ AAS + ++GLPF GP+ G ++ ++GQ+V PR E ++ ++ V+G T+D Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALVDGQWVAFPRWSELERSVFNIVVAGRIVTKDDG 198 Query: 184 ----AVLMVELE------------ANQLSEDVVLDAI----IFGHNECKPVIEAISKLAK 223 A++MVE A +E+VV D + F C+ +E +K +K Sbjct: 199 SEDVAIMMVEAGGGKNEWELIQAGATAPTEEVVADGLEAAKPFIKALCRAQLEVAAKASK 258 Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 A+ P+ +D D +S +EE + + E L K R +D +K++M++ + Sbjct: 259 ETAEFPLFLDYTDEEYSAVEECVGGKLAEAL----LTEGKLARDGAVDAVKEEMLAALAD 314 Query: 282 EHSSWNEGE--IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + EGE + + F ++ +R L ++RMDGR +R +SA+V +L R HGS+ Sbjct: 315 R---FPEGEKNLKAAFRSLEKATIRARTLRDEIRMDGRTPRQIRSLSAEVEVLPRVHGSA 371 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 LF RG+TQ + V TL EQ +D+LS +M YNF P +TGEV R+G+P RREI Sbjct: 372 LFQRGETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREI 431 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GSSSM +VC S+L+L+ AGVP+ PV Sbjct: 432 GHGDLAERALVPVLPTREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPV 491 Query: 460 AGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGL+ DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI Sbjct: 492 AGIAMGLMTGEVDGQPKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQ 551 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL QA+ RL IL+ +++ + + ++ PR+ + +P D+I VIG GK+I Sbjct: 552 LLRAALGQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMIN 610 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I + TGA + I+DDGTV IASS A EAAR I I + +PEV + + G VVK F Sbjct: 611 QIQDDTGADITIEDDGTVYIASSDGASAEAARTTINQIANPQMPEVGERFVGTVVKTTSF 670 Query: 634 GAFVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 GAFV +DGL+HISQ + +R+ DV++ G V V++ + DRGK+ L V Sbjct: 671 GAFVSLTPGKDGLLHISQVRRLVGGKRIESVDDVLQVGQQVEVEINEIGDRGKLSLH-AV 729 Query: 690 VDQNTG 695 +D G Sbjct: 730 IDGEAG 735 >gi|255326374|ref|ZP_05367458.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296591|gb|EET75924.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] Length = 739 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 288/718 (40%), Positives = 424/718 (59%), Gaps = 53/718 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+A+Q+ G+VL T ET +L+ +S ++G DFFPLTV+ +ER YA GK Sbjct: 21 RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAGGK 80 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP Y RRE RP+ IL +R+IDR +RP F+K +NE QV++ V+ ++ + + ++ Sbjct: 81 IPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYEPDEIYNTFAIN 140 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183 AASA+ LSG PF GP+ G ++ I+GQ+V P+ + + D+ V+G T+D Sbjct: 141 AASASTSLSGAPFNGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGTED 200 Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKL-AKMCAK--EPI 230 A++MVE EA S ++ + + G KP I A+ K A + A+ +P Sbjct: 201 VAIMMVEAEATDNSWKLIKEDGQTAPTEEIVAEGLEAAKPFIAALCKAQADLVARAGKP- 259 Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI----------DDLKKKMVSYFS 280 ++ F E++ D V F ++ I +L+++++ + Sbjct: 260 ALELPFFGGHGEDV------DAAVEAFAADRLAEVYSIAGKQEREAAAAELQEELMEALT 313 Query: 281 SEHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E + E E+ F + VVR +L ++VR+DGR +R ++A+V +L R HGS Sbjct: 314 GEGKEFEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGS 373 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + + TL + EQ +DSL + ++ HYNF P +TGE R+G+P RRE Sbjct: 374 ALFERGETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRRE 433 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ P Sbjct: 434 IGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 493 Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI Sbjct: 494 VAGIAMGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPA 553 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 +++ AL QA+ RLHIL + + ++ ++ EF PR+ + IP +I VIG GK+I Sbjct: 554 SVLAGALTQAREARLHILEVLVSAI-DAPDEMSEFAPRIISVKIPVAKIGEVIGPKGKMI 612 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I E TGA ++I+DDGTV I ++ EAAR + +I + VPEV + Y G VVKV D Sbjct: 613 NQIQEDTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTD 672 Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAF+ +DGL+HIS++ +RV DVV G V V++ DDRGK+ L+ Sbjct: 673 FGAFISLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLA 730 >gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni RM1221] gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni RM1221] gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 719 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 274/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++ + Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 IAKE--WSEESVLNTLAKVKRKLIRGQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 IVE+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus subsp. fetus 82-40] gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 728 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/731 (38%), Positives = 420/731 (57%), Gaps = 78/731 (10%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 + ++A+Q+ GAVL TVVLA V + + + +DF PLTV Y E+ YA G+IPGGY Sbjct: 14 FDLNKVAKQAAGAVLMRVKNTVVLAAVAREDAQVE-EDFLPLTVQYIEKQYAAGRIPGGY 72 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 ++RE++P + E L SR+IDRS+RPLF K Y TQ+++ V+ D E VVS+ AAS A Sbjct: 73 VKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQVVSLNAASVA 132 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192 L LS +P PV G +V +ING++V+NP E + S LDL+V+G +D +LM+E+ + Sbjct: 133 LYLSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDLYVAGVKDELLMIEMRSLPNE 192 Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 N+ SED+++DAI A + + Sbjct: 193 QNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKLATEAILKGSNAYEEAFRN 252 Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 KE ++ K ++E E +++ KED++ + K R ++ + K++ Sbjct: 253 YKKETANLEYK--PEIENENVAIYINEFYKEDVKAAINQMAKSERASELSKIAKQIALSE 310 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E I ++ + K+VRT ++ K R DGR + VR IS + +L HGS Sbjct: 311 VAQKEGWDEALISNILGKYKKKLVRTGIIKDKKRADGRGLKDVRPISIETNILPNAHGSC 370 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN----DFMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLGT D Q + L T++N FM +YNF + GE S + AP Sbjct: 371 LFTRGQTQALVVTTLGTDNDAQMSEYL--TEKNAVADKFMFNYNFPGFSVGEASPLKAPG 428 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + PY+LR+VSEI ES+GSSSMA+VCG SL+L AGV Sbjct: 429 RRELGHGNLAKRALYPSIDLNS--PYSLRVVSEILESNGSSSMASVCGGSLSLRAAGVET 486 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGLV +GD+ +L+DI G EDH G MDFKVAG+ GITA+QMD+K+GGIS + Sbjct: 487 IKLVAGVAMGLVFEGDEHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLD 546 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL QAK R HILN M K E + + P++E+ ++ P +I ++IG GK I+ Sbjct: 547 VLKEALYQAKEARDHILNLMVKADEEIVVN-EDVLPKLELFSVDPSKIVDIIGQAGKTIK 605 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE---------------- 618 I+E+ +++D D G VKIA ++EAA++ I IT + Sbjct: 606 EIIEKFEVSIDLDRDKGEVKIAGGERQKVEAAKDYIIQITQKEQRSGGFRNKREYKNVTP 665 Query: 619 --VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 + ++G++ K+ FGAF+ DGL+HIS++ + +KEGDT+ VK+ D Sbjct: 666 FNIGDEFEGEIKKMAAFGAFISLRDGVDGLLHISKIVSP--------LKEGDTIKVKVSD 717 Query: 677 FDDRGKIKLSM 687 GKI L + Sbjct: 718 IKG-GKISLDL 727 >gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] Length = 983 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 265/697 (38%), Positives = 421/697 (60%), Gaps = 21/697 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E GR + ETG++AR ++G+V+ + +T VL+TV +S + +DF PLTV+YQE+ Sbjct: 71 EFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 130 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G IP Y+RRE P E E+L R+IDR IRPLF + +E Q+++NV+ D + P Sbjct: 131 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVLSSDGKQDPD 190 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V++ A+SAALMLS +P+ GP+ +V I+G ++LNP +DE S L+L + ++D L Sbjct: 191 VMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFILNPTVDELGSSDLNLIYACSRDKTL 250 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241 M++++A +++E + + H+E I+ +LAK KE +I + K+ Sbjct: 251 MIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKEKKEYKISLISDTSYEKIR 310 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I+E S + K+ R + ++ + + + + E+ + + + ++ + Sbjct: 311 TFSEAPIEEVFTDSSY--GKFERGEALEKITQTVKAKLEEENDEDSLKFLHKAVDTVRKQ 368 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V+R ++++ +R+DGR + VR + + HGS+LF RGDTQ + VTLG D Q Sbjct: 369 VIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQ 428 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G FM+HY+F P + EV++ G +RRE+GHG LA +A+ VLP + FPY Sbjct: 429 RLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPY 488 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474 +R+ SE+ SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV D ++ Sbjct: 489 AVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYR 548 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ +L+ A++ R IL+ Sbjct: 549 ILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDR 608 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + +S +R +PR+ ++ D +R ++ K I ++TGA+V++ DGTV Sbjct: 609 MDQEISTARAINDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV-SDGTVT 663 Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + ++ A E + + EV + YKG V + ++GAFV F G + GL+HIS+LS Sbjct: 664 IVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELS 723 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 E VAK SDVV G ++ ++ + D RG IKLS+K Sbjct: 724 HEPVAKVSDVVTVGQSLSLRCIGQDVRGNIKLSLKAT 760 >gi|326333597|ref|ZP_08199836.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] gi|325948613|gb|EGD40714.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] Length = 753 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 290/715 (40%), Positives = 427/715 (59%), Gaps = 40/715 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R +K ETG +ARQ+ G+V A ET++L+ + KD DFFPLT++ +ER Y Sbjct: 17 KFGTRTVKFETGLLARQAAGSVTAYLDDETMLLSATTVSKQPKDHFDFFPLTIDVEERMY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + R E RP E+ IL R+IDR +RP F K +NE QV+I VM D + V Sbjct: 77 AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALDPDQPYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD 183 +++ AAS + LSGLPF GPV G +V I GQ+V P + + D+ V+G T D Sbjct: 137 LAINAASMSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196 Query: 184 -AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE-- 228 A++MVE E+ + + D+V + G + KP I EA ++LAK AK Sbjct: 197 VAIMMVEAESTEQTWDLVQSGAQAPTEPIVAGGLDAAKPFIKQLVEAQAELAKQSAKPVQ 256 Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCF---IPEKYVRCKQIDDLKKKMVSYFSS 281 PI +D +D + +E + + + V + K R ++ D +K ++ + Sbjct: 257 EYPIFLDYQDDVYEAVEATVGADVTDLYSVKGSRERVLTKLEREEEGDRIKLALLEKIGA 316 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 + EGEI + ++ + K +RT +L KVR+DGR +R + ++VG++ R HGS+LF Sbjct: 317 QFEG-REGEIGAAYKALTKKAIRTQVLRDKVRIDGRGLADIRPLHSEVGVIPRVHGSALF 375 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL + EQ +D+LS + +M Y F P +TGE R+G+P RRE+GH Sbjct: 376 ERGETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYIFPPFSTGETGRVGSPKRREVGH 435 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LARRA+ PVLP +FPY +R +SE S+GS+SM +VC S+++L++AGVP+ PVAG Sbjct: 436 GALARRALLPVLPSREEFPYAIRQLSEAMGSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 495 Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGL+ DG+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 496 IAMGLISGEIDGETKYVALTDILGAEDAFGDMDFKVAGTSEFVTALQLDTKLDGIPAEVL 555 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QAK R IL+ M + + ++ PR+ + +P D+I VIG GKVI I Sbjct: 556 AQALNQAKDARTTILDVMHEAIGGVE-EMAPTAPRIITVKVPVDKIGEVIGPKGKVINQI 614 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 E TGA+++I+DDGTV I ++ A EAAR + +I + +PEV + Y G VVK +FGA Sbjct: 615 QEDTGAQISIEDDGTVLIGATDGAAAEAARAAVNAIANPTMPEVGERYLGTVVKTTNFGA 674 Query: 636 FVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FV +DGL+HI++L +RV DVV+ G + V++ + DDRGK+ L+ Sbjct: 675 FVALLPGKDGLLHITKLRALNGGKRVESVEDVVEVGQKIQVEIAEIDDRGKLSLA 729 >gi|308176844|ref|YP_003916250.1| polyribonucleotide nucleotidyltransferase [Arthrobacter arilaitensis Re117] gi|307744307|emb|CBT75279.1| polyribonucleotide nucleotidyltransferase [Arthrobacter arilaitensis Re117] Length = 745 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 284/717 (39%), Positives = 425/717 (59%), Gaps = 46/717 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGRIA+Q+ G+ + ET +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 YGTRTIRFETGRIAKQAAGSAMVYIDDETALLSATTAGKHPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE QV++ V+ + + VV Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQVVVTVLSIEPDELYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVG---AQVDYING-QYVLNPRLDEDQGSLDLFV-----SG 180 ++ A+S + LSGLPF GP+ G A VD NG Q+V P+ E + ++ V +G Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVDDGNGAQWVAFPKHSELKNAVFNMVVAGRIAG 197 Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223 A++MVE EA + +++ + + G KP I+ + + K Sbjct: 198 DDVAIMMVEAEATDNAWELIKERGAQAPTEEVVAEGLEAAKPFIKVLCEAQADLAARAAK 257 Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 + P+ D ++ ++ +E S + E ++ +K R + K ++V+ ++ Sbjct: 258 ETVEFPVFRDYEEDAYTAVEAAASTRLAEIYTIA----DKQERDNAAGEFKDEIVAQLTA 313 Query: 282 EHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 E S++ E GEI F + +VR +L ++VR+DGR +R +SA+V +L R HGS+ Sbjct: 314 EGSAFAERAGEISKAFGAVTKHIVRQRILTEQVRIDGRGLADIRQLSAEVEVLPRVHGSA 373 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399 +F RG+TQ + V TL + EQ +DSLS + +M +YNF P +TGE R+G+P RREI Sbjct: 374 IFERGETQIMGVTTLNMLKMEQQIDSLSPVKSKRYMHNYNFPPYSTGETGRVGSPKRREI 433 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ V Sbjct: 434 GHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAV 493 Query: 460 AGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 AGIAMGLV D D + L+DI G ED +G MDFKVAGT +TA+Q+D K+ GI + Sbjct: 494 AGIAMGLVSDTVDGETRYAALTDILGAEDAMGDMDFKVAGTSEFVTAIQLDTKLDGIPAS 553 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 ++ AL QA+ RLHILN +++ + ++ +L PR+ + IP D+I VIG GK+I Sbjct: 554 VLAAALTQAREARLHILNVLNQAI-DAPDELNVNAPRIISVKIPVDKIGEVIGPKGKMIN 612 Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633 I E TGA ++I+DDGTV I +++ EAAR I +I + VPEV + Y G VVK+ F Sbjct: 613 QIQEDTGADISIEDDGTVLIGATNGESAEAARSAINAIANPQVPEVGERYLGTVVKLTTF 672 Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 GAFV +DGL+HIS+L +RV DVV G + V++ DDRGK+ L+ Sbjct: 673 GAFVSLTPGKDGLLHISELRKINGGKRVEDVEDVVGVGQKLQVEITKIDDRGKLSLA 729 >gi|28493388|ref|NP_787549.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei str. Twist] gi|81437795|sp|Q83G94|PNP_TROWT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28476429|gb|AAO44518.1| polyribonucleotide nucleotidyltransferase [Tropheryma whipplei str. Twist] Length = 738 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 289/728 (39%), Positives = 421/728 (57%), Gaps = 62/728 (8%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A GET++L++ + K+ DFFPLTV+ +ER+YA Sbjct: 16 FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 75 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG Y RRE RP+ IL R+IDR +RP F+ +NE QVI+ V+ + Sbjct: 76 AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV--------SG 180 ++ AASA+ ++SGLPF GP+ G ++ I+GQ+V PR ++ G+ DL V SG Sbjct: 136 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 195 Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKD 236 +D A++MVE EA + + D +I H KP VIE + AK+ + I Sbjct: 196 KEDIAIMMVEAEATESAWD-----LIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDL 250 Query: 237 FSKLEEEMSQ-----------------MIKEDLRV-------SCFIPEKYVRCKQIDDLK 272 SKL ++ ++K DL S + P D++K Sbjct: 251 ASKLSLSHTEPDLYPDYSDSVHSFVEGLVKSDLEKVYRGNHDSGYAPNA---LSASDEIK 307 Query: 273 KKMVSYF-----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 +K F S + + ++ + VVRT +L+ RMDGR +R + A Sbjct: 308 QKAYDAFHDAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDA 367 Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387 +V ++ R HGS++F RG+TQ + V TL + EQ +DSL+ ++ HYNF P +TGE Sbjct: 368 EVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGE 427 Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447 V R+G+P RREIGHG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+ Sbjct: 428 VGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLS 487 Query: 448 LMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503 L++AGVP+ PVAGIAMGL+ DG+ ++ L+DISG ED LG MDFKVAGT ITA+ Sbjct: 488 LLNAGVPLRAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITAL 547 Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563 Q+D K+ GI +++ AL A+ RL IL+ +++V+ +S Q+ E+ PRV + IP +I Sbjct: 548 QLDTKLDGIPAHVLSEALAHARSARLAILDVLTRVI-DSPDQMSEYAPRVVRVKIPVQKI 606 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNK 621 +IG GKVI I ++TGA+++I+DDGTV I SS E A M+ SI + P V Sbjct: 607 GELIGPKGKVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGS 666 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDF 677 + G VVK M FG+F+ +DGL+HIS++ + +V+ G V V++ Sbjct: 667 QFLGTVVKNMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKI 726 Query: 678 DDRGKIKL 685 DDRGK+ L Sbjct: 727 DDRGKLCL 734 >gi|28572501|ref|NP_789281.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei TW08/27] gi|81628250|sp|Q820Y9|PNP_TROW8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28410633|emb|CAD67019.1| mRNA processing exonuclease [Tropheryma whipplei TW08/27] Length = 735 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 289/728 (39%), Positives = 421/728 (57%), Gaps = 62/728 (8%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V+A GET++L++ + K+ DFFPLTV+ +ER+YA Sbjct: 13 FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 72 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG Y RRE RP+ IL R+IDR +RP F+ +NE QVI+ V+ + Sbjct: 73 AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 132 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV--------SG 180 ++ AASA+ ++SGLPF GP+ G ++ I+GQ+V PR ++ G+ DL V SG Sbjct: 133 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 192 Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKD 236 +D A++MVE EA + + D +I H KP VIE + AK+ + I Sbjct: 193 KEDIAIMMVEAEATEPAWD-----LIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDL 247 Query: 237 FSKLEEEMSQ-----------------MIKEDLRV-------SCFIPEKYVRCKQIDDLK 272 SKL ++ ++K DL S + P D++K Sbjct: 248 ASKLSLSHTEPDLYPDYSDSVHSFVEGLVKSDLEKVYRGNHDSGYAPNA---LSASDEIK 304 Query: 273 KKMVSYF-----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 +K F S + + ++ + VVRT +L+ RMDGR +R + A Sbjct: 305 QKAYDAFHDAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDA 364 Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387 +V ++ R HGS++F RG+TQ + V TL + EQ +DSL+ ++ HYNF P +TGE Sbjct: 365 EVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGE 424 Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447 V R+G+P RREIGHG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+ Sbjct: 425 VGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLS 484 Query: 448 LMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503 L++AGVP+ PVAGIAMGL+ DG+ ++ L+DISG ED LG MDFKVAGT ITA+ Sbjct: 485 LLNAGVPLRAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITAL 544 Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563 Q+D K+ GI +++ AL A+ RL IL+ +++V+ +S Q+ E+ PRV + IP +I Sbjct: 545 QLDTKLDGIPAHVLSEALAHARSARLAILDVLTRVI-DSPDQMSEYAPRVVRVKIPVQKI 603 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNK 621 +IG GKVI I ++TGA+++I+DDGTV I SS E A M+ SI + P V Sbjct: 604 GELIGPKGKVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGS 663 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDF 677 + G VVK M FG+F+ +DGL+HIS++ + +V+ G V V++ Sbjct: 664 QFLGTVVKNMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKI 723 Query: 678 DDRGKIKL 685 DDRGK+ L Sbjct: 724 DDRGKLCL 731 >gi|220912209|ref|YP_002487518.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter chlorophenolicus A6] gi|254782702|sp|B8HG67|PNP_ARTCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219859087|gb|ACL39429.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Arthrobacter chlorophenolicus A6] Length = 752 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/713 (39%), Positives = 420/713 (58%), Gaps = 41/713 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + E T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG-QYVLNPRLDEDQGSLDLFV-----SG 180 ++ A+S + LSGLPF GP+ G +V + NG Q+V P+ + + S+ V +G Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRVAG 197 Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAK 223 A++MVE EA S +++ + + G KP I+A+ ++ AK Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257 Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 + P+ +D +D + + + L I +K R D LK ++ S + + Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQERDTASDALKDEVTSSLAGQF 315 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F + VVR +L ++R+DGR +R ++A+V +L R HGS++F R Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSLS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ VAGIA Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL ++ + ++ +L EF PRV + IP D+I VIG GK+I I E Sbjct: 555 ALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I +++ +AAR I +I + VPE+ + Y G VVK FGAFV Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS+L + +RV DVV G V V++ DDRGK+ LS Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLS 726 >gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium urealyticum DSM 7109] gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] Length = 765 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/724 (40%), Positives = 411/724 (56%), Gaps = 54/724 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +ARQ+DGAV A E T++L+T RS ++G DFFPLTV+ +ER Y Sbjct: 42 DFGSRTLRFETGLLARQADGAVTAYLDEDTILLSTTTASRSPREGIDFFPLTVDVEERMY 101 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 + G+IPG + RRE RP + IL +R+IDR +RP F K +NE QV+I VM D V Sbjct: 102 SAGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVKGLRNEVQVVITVMSIDPNEMYDV 161 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDE-DQGSLDLFVSG- 180 +++ ASA+ LSGLP V G ++ ++ GQ+V P ++ Q +L V+G Sbjct: 162 LAINGASASTQLSGLPVSSSVGGVRMALVVDEEHPEGQWVAFPTREQVSQSVFELVVAGR 221 Query: 181 --------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV-----IEAISK- 220 AV+MVE A D V++ I G IEA Sbjct: 222 VTEPAKGGRGKKSQPNVAVMMVEAGAT----DNVVERIAEGAPAPTEAVVAEGIEAAKPF 277 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL----RVSC--------FIPEKYVRCKQI 268 +A +CA + + D+ D E E+ ED+ C I +K R + + Sbjct: 278 IATLCAAQDALRDAVDTESREFELFPPFDEDVYSAVEAECDADVAQIMTIADKQERDESL 337 Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328 + ++ V E E EI + D+ +VR +L+ R+DGRD ++RD+ Sbjct: 338 AENMQETVDALI-EQFPERESEIRAAHNDLTRTIVRQRILEDGFRIDGRDHTSIRDLGIV 396 Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388 V LL R HGS+LF RG+TQ + V TL T + EQ +DSL ++ HYNF P +TGE Sbjct: 397 VQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETSKRYIHHYNFPPYSTGET 456 Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448 R+G+P RREIGHG LA RA+ PVLP +FPYT+R VSE S+GS+SM +VC S+L+L Sbjct: 457 GRVGSPKRREIGHGALAERALTPVLPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSL 516 Query: 449 MDAGVPISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504 +AGVP+ PVAGIAMGLV DG + F+ L+DI G ED G MDFKVAGT +TA+Q Sbjct: 517 YNAGVPLKAPVAGIAMGLVSGLVDGKEKFVSLTDILGAEDAFGDMDFKVAGTSEYVTALQ 576 Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564 +D K+ G+ ++ AL QA+ RL IL M + ++ Q+ E PR+ ++IP ++I Sbjct: 577 LDTKLDGLPSEVLASALGQARSARLEILQLMEDAI-DAPDQMSELAPRITKISIPQNKIG 635 Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKI 622 VIG GK I I E+TGA ++I+DDGTV +++ EAA E I +I + P+V Sbjct: 636 EVIGPKGKTINQITEETGANISIEDDGTVFVSAVGGEAAEAAIEKINAIANPQQPKVGDR 695 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G VVK FGAF+ RDGL+HIS + + R+ K D + GD + V++ D D+RG Sbjct: 696 FLGTVVKTTAFGAFISLLPGRDGLLHISNIGGDRRIEKVEDELNVGDKIQVEIADIDNRG 755 Query: 682 KIKL 685 KI L Sbjct: 756 KISL 759 >gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae FF5] Length = 472 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/452 (51%), Positives = 321/452 (71%), Gaps = 4/452 (0%) Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 S + E + I + ++ K R ++ +LK ++V+ + E S + E+ + F Sbjct: 15 LSAIRSEFGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFG 70 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+ + VR +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT Sbjct: 71 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 130 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP Sbjct: 131 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 190 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL Sbjct: 191 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 250 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M+ Sbjct: 251 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 310 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +++ +SR +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI Sbjct: 311 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 370 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S EAAR+ + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS R Sbjct: 371 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 430 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V K +D++KEG V V +LD D+RG+IKLS+K Sbjct: 431 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSIK 462 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 26/194 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66 RPL +E G + ++ G+ L T GET +V+AT+ R + +G+ P ++Y Sbjct: 97 RPLNIEVG-VLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 155 Query: 67 TYAVGKIP--GGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDL 122 ++VG+ GG RRE I R+ RS++ + + + +V+ + + + Sbjct: 156 PFSVGECGRMGGAGRRE-------IGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNG 208 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLF 177 SS + S+ AS ALM +G+P + PV G + + G+ +L L DED G +D Sbjct: 209 SSS--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFK 266 Query: 178 VSGTQDAVLMVELE 191 V+GT V ++++ Sbjct: 267 VAGTSKGVTALQMD 280 >gi|119960529|ref|YP_947337.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter aurescens TC1] gi|187470966|sp|A1R525|PNP_ARTAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119947388|gb|ABM06299.1| putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase alpha chain [Arthrobacter aurescens TC1] Length = 750 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 281/719 (39%), Positives = 420/719 (58%), Gaps = 41/719 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + E T +L+ + ++G DFFPLTV+ +ER YA Sbjct: 18 FGKRVIRFETGRLAKQAAGASMVYIDEDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R++DR +RP F K +NE Q+++ V+ + + VV Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVLNPRLDEDQGSLDLFV-----SG 180 ++ A+S + LSGLPF GP+ G +V I Q+V P+ + + ++ V +G Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIADEQGSQWVAFPKHSQLENAVFNMVVAGRIAG 197 Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223 A++MVE EA S +++ + + G KP I+A+ + K Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 257 Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 + P+ +D +D + + + L I +K R D+LK +++ + + Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQDRDNASDELKDEVLGALAGQF 315 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 E E+ + F + VVR +L +VR+DGR +R ++A+V +L R HGS++F R Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQ + V TL + EQ +DSLS R +M +YNF P +TGE R+G+P RREIGHG Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ VAGIA Sbjct: 435 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494 Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 MGLV D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL+QA+ RLHIL ++ + ++ +L EF PRV + IP D+I VIG GK+I I E Sbjct: 555 ALKQAREARLHILEVINAAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637 TGA ++I+DDGTV I +++ +AAR I +I + VPE+ + Y G VVK FGAFV Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673 Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 +DGL+HIS+L + +RV DVV G V V++ DDRGK+ LS V ++ Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLSPVVAEE 732 >gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] Length = 705 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 275/689 (39%), Positives = 408/689 (59%), Gaps = 15/689 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG++A+ + GAV+ GET VL TVV D L G+DF PL V Y+E++YA GKIP Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 ++RRE P E E+L R+IDRSIRPLF K Y ETQ++ NV+ D E P +++ AAS Sbjct: 75 TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLSSDGEQDPDILAANAAS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL LS +P+ GP+ ++ ++G++V+NP +D GS L+L S T + LM+E +A + Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDL 252 ++ A+ H+E +IE +LA K P+ + D L E++ + +E + Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDAPVL-EKIRGLSEEHI 253 Query: 253 RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + P K+ R K + + + E+ F+ ++ ++VR + K Sbjct: 254 KAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQK 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 +R+DGR VRD+ + G+ HGSSLF RG+TQ + VTLG ED Q +DS+ G Sbjct: 314 NIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPP 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL-PQTAQFPYTLRIVSEI 429 + FM+HY+F P + EV ++G +RRE+GHG LA +A+ +L P+ FPY++R+ SE+ Sbjct: 374 KKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEV 433 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGD 482 SDGSSSMATVCG SLALMDAG+P+ VAGI++GL+ + D ++ IL+DI G Sbjct: 434 MASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLITNVDAETGEIKNYKILTDILGL 493 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFK+AGT G+TA+Q+D+K+ G+ +I+ AL+ A R IL+ M K +S+ Sbjct: 494 EDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKP 553 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + TPR + I + I +IG G IR + +GA++ + +DG V I S S Sbjct: 554 RDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKS 613 Query: 603 IEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+ MI ++ V + Y G V + DFGAF+ F G + GL+HIS++S E V+ + Sbjct: 614 FKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVSSIA 673 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ G + V D RG +K S K V Sbjct: 674 DVLSVGQQITVLCTGRDFRGNLKFSRKAV 702 >gi|300933063|ref|ZP_07148319.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium resistens DSM 45100] Length = 787 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 288/735 (39%), Positives = 422/735 (57%), Gaps = 73/735 (9%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ E+G +ARQ+DGAV A E T++L+T R+ ++G DFFPLTV+ +ER Y Sbjct: 61 DFGKRTVRFESGLLARQADGAVTAYLDEDTMLLSTTTASRNPREGIDFFPLTVDVEERMY 120 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QVI+ V+ D + V Sbjct: 121 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPTFVKGLRNEVQVIVTVLSMDPQEMYDV 180 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDEDQGS-LDLFVSG- 180 +++ AASA+ LSGLP V G ++ D+ GQ+V P ++ S +L V+G Sbjct: 181 LAINAASASTQLSGLPVSSAVGGVRMALVVDEDHPEGQWVAFPTREQLSASVFELVVAGR 240 Query: 181 -----------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNEC 211 T AV+MVE A +E VV + I Sbjct: 241 VTEPVKGARGRRTKGGDTNVAVMMVEAGATADAVERIAQGAPAPTEAVVAEGI----EAA 296 Query: 212 KPVI-------EAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIP 259 KP I +A+S+ + A+E P D ++ +E E + + E + ++ Sbjct: 297 KPFIATLCEAQDALSRAIETEAREFELFPPFGEDV--YTSVEAETVEALGEIMSIAD--- 351 Query: 260 EKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317 + ++ D L + M + E EGEI + D+ ++VR +L++ R+DGR Sbjct: 352 ----KQERDDALAENMQATVDELLEEFPEREGEIRAAHNDVTKQLVRQRILEEGFRIDGR 407 Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377 D+ T+RD+ V L+ R HGS+LF RG+TQ + V TL T + EQ +DSL ++ H Sbjct: 408 DATTIRDLGIVVQLVPRAHGSALFERGETQILGVTTLDTLKMEQQIDSLGTETSKRYIHH 467 Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437 YNF P +TGE R+G+P RREIGHG LA RA+ PV+P +FPYT+R VSE S+GS+S Sbjct: 468 YNFPPFSTGETGRVGSPKRREIGHGALAERALVPVIPSRDEFPYTIRQVSEAMGSNGSTS 527 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKV 493 M +VC S+L+L +AGVP+ PVAGIAMGLV + D ++ L+DI G ED G MDFKV Sbjct: 528 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGNKDKYVTLTDILGAEDAFGDMDFKV 587 Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553 AGT+ +TA+Q+D K+ GI +++ AL QA+ RL IL M + ++ + EF PR+ Sbjct: 588 AGTEDFVTALQLDTKLDGIPSDVLAEALGQARTARLEILQLMEDAI-DAPDDMSEFAPRI 646 Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613 ++IP ++I VIG GK I I E+TGA ++I++DGTV I+++ AA E I +I Sbjct: 647 TTISIPANKIGEVIGPKGKTINQITEETGADISIEEDGTVFISATGGQAAAAAEEKINAI 706 Query: 614 TD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTV 670 + +P++ + G VVK FGAFV RDGL+HIS L + R+ + D V GD + Sbjct: 707 ANPQLPKIGDRFLGTVVKTTAFGAFVSLVPGRDGLIHISNLGGDRRIERVEDEVSVGDKI 766 Query: 671 WVKLLDFDDRGKIKL 685 V++ D D+RGKI L Sbjct: 767 EVEIADIDNRGKISL 781 >gi|46203340|ref|ZP_00051652.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum magnetotacticum MS-1] Length = 386 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/367 (62%), Positives = 284/367 (77%) Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391 + R HGS+L +TQA++ TLGT +DEQ D L+G R FM+HYN P + GE RM Sbjct: 1 MPRAHGSALLSLVETQALLFATLGTGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGRM 60 Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451 G+P RREIGHG+LA RA+ P LP FPYT+R+VSEITES+GSSSMATVCGSSLA+MDA Sbjct: 61 GSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEITESNGSSSMATVCGSSLAMMDA 120 Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 GVP+ KPVAGIAMGL+K+G+DF +LSDI GDEDHLG MDFKVAGT G+TA+QMD+KI Sbjct: 121 GVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITS 180 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I+E IM +AL QAK GR+HIL EM+K L +R + PR+ ++IP ++IR VIG GG Sbjct: 181 ITEEIMKIALGQAKDGRIHILGEMNKGLDHARDSVSGNAPRITSISIPKEKIREVIGTGG 240 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631 KVIR I EQTGAK++IDDDGT+K+AS + A + IR I PE+ IY G+VVKV+ Sbjct: 241 KVIREICEQTGAKIDIDDDGTIKVASVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVV 300 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 DFGAFV+F G+RDGLVHIS+L+ ERVAKT+DVVK+GD V VK+L FDDRGK+KLSMK VD Sbjct: 301 DFGAFVNFLGSRDGLVHISELARERVAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVD 360 Query: 692 QNTGKPI 698 Q TG+ I Sbjct: 361 QTTGEDI 367 Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 16/149 (10%) Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVM 118 ++Y Y+VG+ R P EI ++ R++RP + + +V+ + Sbjct: 45 LHYNCPPYSVGEAG-----RMGSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEIT 99 Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GS 173 + + SS + ++ +S A+M +G+P PV G + I N VL+ L DED G Sbjct: 100 ESNGSSS--MATVCGSSLAMMDAGVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGD 157 Query: 174 LDLFVSGTQDAV--LMVELEANQLSEDVV 200 +D V+GT D V L ++++ ++E+++ Sbjct: 158 MDFKVAGTVDGVTALQMDIKITSITEEIM 186 >gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter upsaliensis JV21] gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter upsaliensis JV21] Length = 736 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 281/717 (39%), Positives = 429/717 (59%), Gaps = 70/717 (9%) Query: 22 RIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80 ++A+Q+ G+VL G++VVLATV D+ ++ +DF PLTV Y E+ YAVG+IPGGY++R Sbjct: 37 KVAKQAAGSVLMRVGKSVVLATVAREDKQVE--EDFLPLTVQYIEKAYAVGRIPGGYIKR 94 Query: 81 ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140 E++P +NE L +R+IDRS+RPLF K Y TQ+++ V+ D E V+S+ AAS AL L Sbjct: 95 ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVALYL 154 Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA------- 192 SG+P + PV G ++ IN ++VLNP + + +LDL+V+G +D +LM+E+ A Sbjct: 155 SGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKDELLMIEMRALPSESEG 214 Query: 193 ----------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230 N+LSED +L A+ K ++ + + K Sbjct: 215 EAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAK---KAILNGSNAYEEAFFKHRK 271 Query: 231 VIDSKDFSKLEE-EMSQMIKEDLRVSC-FIPEKYVRCKQIDDLKKKMVSYFSSEH--SSW 286 + + +LE E+ + IK++ F + + ++ +L+K + E+ + Sbjct: 272 KEELELKEELENVELFEFIKQNYTNEVKFAINQMAKSERASELEKIVKELMKLENIIDKY 331 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 ++ ++ + ++ ++VR +L ++ R DGR+ VR I + +L HGS LF RG T Sbjct: 332 SQEDVFNALSKVKKELVRAQILKERKRADGRNLNEVRAIEIETNILPNAHGSCLFTRGQT 391 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPSRREIGHG 402 QA+VV TLG D Q VD LS ++N FM++YNF + GE S + AP RRE+GHG Sbjct: 392 QALVVATLGGENDAQMVDLLS--EKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHG 449 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP K VAG+ Sbjct: 450 NLAKRALYPSVDEN--YPYVVRLVSEILESNGSSSMATVCGGSLALRAAGVPSIKLVAGV 507 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGLV + +D+ IL+DI G EDH G MDFKVAGT GITA+QMD+K+GGI ENI+ AL Sbjct: 508 AMGLVLEDNDYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGIDENILKNALY 567 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA+ RLHIL+ M + S+ + E P++E+ ++ P +I ++IG GK I+ I+E+ G Sbjct: 568 QAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIGQAGKTIKEIIEKFG 626 Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSIT--------DVPEVN---KIYKGQVVKV 630 +++D + G VKIA + +I+AA++ I SIT D+ + + ++ +V KV Sbjct: 627 VSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKDLTQFKVGEEFFEAEVKKV 686 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 FGAF+ DGL+H S++ T+ + E D V VK+ + + GKI + + Sbjct: 687 APFGAFIALKDGVDGLLHSSKMKTK--------LSENDKVDVKISEIKN-GKISVDL 734 >gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198] gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198] Length = 454 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/434 (51%), Positives = 312/434 (71%) Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319 +K R +QI+ ++ ++++ +E + +E EI +F ++ +VR +L + R+DGR+ Sbjct: 7 KKQERYEQIEAIRDEVIATLLAEDETLDEAEISEIFSGLEKNIVRARVLAGEPRIDGREK 66 Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379 + VR + + GLL RTHGS+LF RG+TQA+V TLGT D Q +D + G + F++HYN Sbjct: 67 DMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTDTFLLHYN 126 Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439 F P + GE MG+P RREIGHGRLA+R + V+P +FPYT+R+VSEITES+GSSSMA Sbjct: 127 FPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMA 186 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 +VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ +G Sbjct: 187 SVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRNG 246 Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559 ++A+QMD+KI GI+ IM +AL QAK RLHIL M +S+ R + EF PR+ + I Sbjct: 247 VSALQMDIKIEGITREIMQVALNQAKSARLHILGVMEDAISKPRADISEFAPRIHTIKIN 306 Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619 PD+I++VIG GG VIR + E+TG + I+DDGTVKIA++S + + A I IT EV Sbjct: 307 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATSGDQAKQAIARIEEITAEVEV 366 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K SD ++ G V VK+L+ D Sbjct: 367 GRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVSDYLEMGQEVPVKVLEIDR 426 Query: 680 RGKIKLSMKVVDQN 693 +G+I+LSMK N Sbjct: 427 QGRIRLSMKEAQAN 440 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 28/195 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----------DFFPLTVNY 63 R L + TG + R + G+ L T GET L T + +D Q D F L N+ Sbjct: 70 RALDIRTGLLPR-THGSALFTRGETQALVTATLG-TARDAQTIDDIMGEHTDTFLLHYNF 127 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ G + P EI R+ R + + + +V+ + + + Sbjct: 128 P--PYSVGET--GMM---GSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESN 180 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDL 176 SS + S+ AS ALM +G+P + V G + + + VL+ L DED G +D Sbjct: 181 GSSS--MASVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDF 238 Query: 177 FVSGTQDAVLMVELE 191 V+G+++ V ++++ Sbjct: 239 KVAGSRNGVSALQMD 253 >gi|227497565|ref|ZP_03927791.1| polynucleotide phosphorylase/polyadenylase [Actinomyces urogenitalis DSM 15434] gi|226832965|gb|EEH65348.1| polynucleotide phosphorylase/polyadenylase [Actinomyces urogenitalis DSM 15434] Length = 789 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 275/717 (38%), Positives = 410/717 (57%), Gaps = 36/717 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A GET VL+ + KD DFFPLTV+ +ER YA Sbjct: 20 FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R + IL R+IDR +RP F K +NE QV+ V+ + + V+ Sbjct: 80 AGRIPGSFFRREGRAGTSAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDAYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AAS + ++GLPF GPV G ++ I+GQ+V PR E ++ + ++ V+G Sbjct: 140 AINAASMSTQIAGLPFAGPVAGTRLALIDGQWVAFPRYSELERATFNMVVAGRVLEDGDV 199 Query: 181 ---------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228 T++A ++ A +E VV A+ K + EA K+AK +K Sbjct: 200 AIMMVEAGATENAWDLIRAGATAPTEPVVASALEAAKPHIKALCEAQMKVAKHASKPTAE 259 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D D + E DL + K R D ++ +++ + + + Sbjct: 260 FPLYLDYSD-EQYEAVEKAATAHDLAGAIATEGKQARDLATDAVRDAVLADLAEQFGTEE 318 Query: 288 E-GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + + + F+ + K+VR L + +RMDGR + +R + A+V +L R HGS++F RG+T Sbjct: 319 DVKALKAAFKSVTKKLVRHRTLTEGIRMDGRGLKDIRTLGAEVEVLPRVHGSAIFERGET 378 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL EQ +D LS +M Y F P +TGE R+GAP RREIGHG LA Sbjct: 379 QIMGVTTLNMLRMEQQIDDLSPITHKRYMHQYIFPPFSTGETGRVGAPKRREIGHGALAE 438 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA+ PV+P +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGL Sbjct: 439 RALVPVIPSRDEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498 Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 + DG+ + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ +++ AL Sbjct: 499 MHEEIDGETKWATLTDILGSEDAFGDMDFKVAGTREFITALQLDTKLDGLPSDVLAGALG 558 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA+ R IL+ M + + + ++ PRV + IP D+I VIG GK+I I E TG Sbjct: 559 QARDARFFILDVMEQAI-DGPDEMAPTAPRVLTVHIPVDKIGEVIGPKGKMINQIQEDTG 617 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640 A + ++DDGTV I +S EAAR+ + +I + +PE+ + + G VVK FGAFV Sbjct: 618 ADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677 Query: 641 GARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +DGL+HISQ+ +RV DV+ GD V V+L + D RGK+ L + D+ Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLTDEQ 734 >gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81116] gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni M1] Length = 719 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 273/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL S4-378] Length = 520 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 236/521 (45%), Positives = 339/521 (65%), Gaps = 6/521 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295 +LE E+ + ++ + EK R I+++K++++ + E+ + GE+ + Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILXXXKAKELENEAEILGEVAHIL 299 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQI 520 >gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens] Length = 817 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/713 (38%), Positives = 417/713 (58%), Gaps = 24/713 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E + ETG++AR + GAV+ GET VL TVV D G+DF PL V Y+E+ Sbjct: 88 EAEVGNMKMSFETGKLARFASGAVVVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQ 147 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIP ++RRE P E E+L R+IDRS+RPLF K + ++Q+I NV+ D + P Sbjct: 148 YAQGKIPATFMRREGAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPD 207 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 V+++ AASAAL++S +P++GP+ ++ + G++++NP +DE S L+L + T + + Sbjct: 208 VLAVNAASAALVISDIPWKGPIGCVRIGRVKGKFIVNPNMDEFSLSDLNLVYACTAEKTV 267 Query: 187 MVELEANQLS-EDVVLDAIIFGHNECK---PVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 M+E +A +++ +D V + K P +E +K+A + P++ + + E Sbjct: 268 MIETQAREITNQDYVAALHLAHAEATKLIPPQLELAAKVAVLKRPLPVLTVPPE---VLE 324 Query: 243 EMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 ++ + K + P+ K+ R + + +++++ + SE + + F+ ++ Sbjct: 325 KVRSLAKIAIEAVMGNPQFGKFERGQTLGAIEEEVKNRLISEGDEVSVKLLPYAFDAVKK 384 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +V+R + +K +R+DGR VR++ + G HGSS+F RG+TQ + VT+G +D Sbjct: 385 EVLRRNIFEKGMRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDA 444 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Q +DSL G R FM+HY+F P + EV R G +RRE+GHG LA +A+ +LP FP Sbjct: 445 QRLDSLVGIDRKRFMVHYSFPPFSINEVGRTGGLNRREVGHGTLAEKALVALLPPEEDFP 504 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DF 473 Y++R+ SE SDGSSSMATVCG SLALMDAG+P+ V +++GLV D ++ Sbjct: 505 YSVRVTSECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEY 564 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ AL+ A GR IL+ Sbjct: 565 RILTDILGLEDHLGDMDFKIAGTKKGITAIQLDIKPAGIPLHILCEALEPALVGRTQILD 624 Query: 534 EMSKVLSESRLQLG-EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M +V+S R E PR M I D I +IG G I+ I + + A++NI DG Sbjct: 625 FMEQVISSPRDSTARENLPRSGTMNIQQDSIGRLIGPQGSNIKNIQKVSDARINISGDGV 684 Query: 593 VKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V I + A + A++M+ S+ EV Y +VV + DFGAF+ G GL+HIS+ Sbjct: 685 VTIFARDQASFDLAKQMVEASVGKEVEVGGTYSARVVAIKDFGAFMELNGGYQGLLHISE 744 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-----VVDQNTGKPIV 699 ++ ER+ + SD + G + V + D RG +KLS K VV +N +P + Sbjct: 745 IAHERIERVSDYLSIGQELSVVCIGRDLRGNLKLSRKMTLPLVVPENATQPPI 797 >gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 719 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 273/693 (39%), Positives = 409/693 (59%), Gaps = 82/693 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNGELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + ++G V K+ FGAFV DGL+H S++ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 690 >gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium jeikeium K411] gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium K411] Length = 764 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 291/745 (39%), Positives = 415/745 (55%), Gaps = 71/745 (9%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG +ARQ+DGAV A E T++L+T R ++G DFFPLTV+ +ER Y Sbjct: 30 DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VG+IPG + RRE RP + IL +R+IDR +RP F + +NE QVI+ V+ D + V Sbjct: 90 SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNP-RLDEDQGSLDLFVSG- 180 +++ ASA+ LSGLP GPV G ++ D+ GQ+V P R E++ +L V+G Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209 Query: 181 -----------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217 AV+MVE A D V++ I G P E Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGAT----DNVVERIAEGA--PAPTEEV 263 Query: 218 ISK--------LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSC------------F 257 +++ +A +C + + + D E E+ ED+ S Sbjct: 264 VAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMA 323 Query: 258 IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317 I +K R + + + V E E EI + ++ VVR +L+ R+DGR Sbjct: 324 IADKQERDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGR 382 Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377 DS T+RD+ V L+ R HGS+LF RG+TQ + V TL + EQ +DSL ++ H Sbjct: 383 DSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHH 442 Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437 YNF P +TGE R+G+P RREIGHG LA RA+ PV+P FPYT+R VSE S+GS+S Sbjct: 443 YNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTS 502 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLV-----KDG-DDFIILSDISGDEDHLGHMDF 491 M +VC S+L+L +AGVP+ PVAGIAMGLV K G D ++ L+DI G ED G MDF Sbjct: 503 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDF 562 Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551 KVAGT +TA+Q+D K+ GI +++ ALQQA+ RL IL M + + +S + + P Sbjct: 563 KVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAI-DSPDDMSDLAP 621 Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611 + + IP ++I VIG GK I I E+TGA + I+DDGTV I++ A E I Sbjct: 622 HITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKIN 681 Query: 612 SITDV--PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGD 668 +I + P+V + G VVK FGAFV RDGL+HIS L + R+ + D V GD Sbjct: 682 AIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGD 741 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQN 693 + V++ D D+RGKI S+ +V++N Sbjct: 742 KLEVEIADIDNRGKI--SLVLVEEN 764 >gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 719 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 272/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G+++VLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSIVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|332670053|ref|YP_004453061.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas fimi ATCC 484] gi|332339091|gb|AEE45674.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Cellulomonas fimi ATCC 484] Length = 742 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 283/707 (40%), Positives = 414/707 (58%), Gaps = 36/707 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ A GET++L+ + KD DFFPLT++ +ER YA Sbjct: 18 FGTRTVRFETGRLAKQAAGSAAAYLDGETMLLSATTAGKHPKDQFDFFPLTIDVEERQYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL R++DR +RPLF K +NE QV+I V+ + + + Sbjct: 78 AGKIPGSFFRREGRPSTEAILACRLVDRPLRPLFVKGLRNEVQVVITVLAIHPDDAYDTL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AAS + LSGLPF GPV G ++ ++GQ+V PR E ++ + D+ V+G A Sbjct: 138 AINAASISTQLSGLPFSGPVGGVRIALVDGQWVAFPRYSERERATFDMVVAGRVVGDDVA 197 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE---- 228 + M+E EA + S +++ + + G KP I EA +LA AKE Sbjct: 198 IAMIEAEAPEKSWNLIQEGATAPTEEVVAQGLEAAKPFIKVLVEAQQELAAKAAKETQVF 257 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P D +D + L + I +K R ++D++K ++V + E E Sbjct: 258 PTFPDYQD--DAFAAVEAAATTSLGEALSIADKQTRENRLDEIKAEVVGQLA-EQFEGRE 314 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + + +Q K++R +L R+DGR +R +SA+V +L R HGS++F RG+TQ Sbjct: 315 KELSAAYRSVQKKLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRVHGSAIFERGETQI 374 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 375 LGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMGLV Sbjct: 435 LMPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVS 494 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL QA Sbjct: 495 DTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGALTQA 554 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K RL IL+ +++ + ++ F PRV + +P D+I VIG GK+I I E+TGA Sbjct: 555 KEARLAILDVIAEAIDVPD-EMSPFAPRVITVKVPVDKIGEVIGPKGKMINQIQEETGAD 613 Query: 585 VNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGTV I ++ AE A + +PEV + + G VVK FGAFV Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEVGERFVGTVVKTTTFGAFVSLSPG 673 Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 674 KDGLLHISQIRKLVGGKRVENVEDVLSVGQKVQVEIGEIDPRGKLSL 720 >gi|289705304|ref|ZP_06501702.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Micrococcus luteus SK58] gi|289557967|gb|EFD51260.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Micrococcus luteus SK58] Length = 753 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 282/721 (39%), Positives = 417/721 (57%), Gaps = 39/721 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + E T +L+ +S ++G DFFPLTV+ +ER YA Sbjct: 18 YGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F K +NE QV++ V + V Sbjct: 78 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181 ++ AAS + LSGLPF GP+ G ++ ++ Q+V P+ + +G+ ++ V+G Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVV 197 Query: 182 --QDAVLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCA 226 A++MVE EA S +V + + G KP I EA + L K Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257 Query: 227 KEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS 284 K+P+ + +D+ + + D F I +K R D +++ + E Sbjct: 258 KDPVDVPVFQDYQDDAYAAVEKLATDRLAEIFSIGDKQERESASDAYLLEVLEELAGEGK 317 Query: 285 SWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E GEI + + ++VR +L +VR+DGR +R ++A+V +L R HGS++F Sbjct: 318 DFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFE 377 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +DSL+ +M HYNF P +TGE R+G+P RREIGHG Sbjct: 378 RGETQIMGVTTLNMLKMEQQIDSLAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 437 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGI Sbjct: 438 ALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGI 497 Query: 463 AMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 498 AMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLA 557 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 AL QA+ RLHIL+ ++ + ++ ++ PR+ + IP D+I VIG G +I I Sbjct: 558 AALTQAREARLHILSVLNAAI-DAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQ 616 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 + TGA + I+DDGTV I ++ A EAAR + +I + VPEV + Y G VVK+ FGAF Sbjct: 617 DDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAF 676 Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 V +DGL+HIS+L +RV DV+ G V V++ DDRGK+ LS V + Sbjct: 677 VSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLSPVVAES 736 Query: 693 N 693 + Sbjct: 737 D 737 >gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 764 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 289/739 (39%), Positives = 410/739 (55%), Gaps = 69/739 (9%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG +ARQ+DGAV A E T++L+T R ++G DFFPLTV+ +ER Y Sbjct: 30 DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +VG+IPG + RRE RP + IL +R+IDR +RP F + +NE QVI+ V+ D + V Sbjct: 90 SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNP-RLDEDQGSLDLFVSG- 180 +++ ASA+ LSGLP GPV G ++ D+ GQ+V P R E++ +L V+G Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209 Query: 181 -----------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217 AV+MVE A D V++ I G P E Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGAT----DNVVERIAEGA--PAPTEEV 263 Query: 218 ISK--------LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSC------------F 257 +++ +A +C + + + D E E+ ED+ S Sbjct: 264 VAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMA 323 Query: 258 IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317 I +K R + + + V E E EI + ++ VVR +L+ R+DGR Sbjct: 324 IADKQERDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGR 382 Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377 DS T+RD+ V L+ R HGS+LF RG+TQ + V TL + EQ +DSL ++ H Sbjct: 383 DSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHH 442 Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437 YNF P +TGE R+G+P RREIGHG LA RA+ PV+P FPYT+R VSE S+GS+S Sbjct: 443 YNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTS 502 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLV-----KDG-DDFIILSDISGDEDHLGHMDF 491 M +VC S+L+L +AGVP+ PVAGIAMGLV K G D ++ L+DI G ED G MDF Sbjct: 503 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDF 562 Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551 KVAGT +TA+Q+D K+ GI +++ ALQQA+ RL IL M + + +S + + P Sbjct: 563 KVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAI-DSPDDMSDLAP 621 Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611 + + IP ++I VIG GK I I E+TGA + I+DDGTV I++ A E I Sbjct: 622 HITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKIN 681 Query: 612 SITDV--PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGD 668 +I + P+V + G VVK FGAFV RDGL+HIS L + R+ + D V GD Sbjct: 682 AIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGD 741 Query: 669 TVWVKLLDFDDRGKIKLSM 687 + V++ D D+RGKI L + Sbjct: 742 KLEVEIADIDNRGKISLVL 760 >gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 720 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 273/692 (39%), Positives = 408/692 (58%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++++ Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKHKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P L + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSLDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFDVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 780 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 289/722 (40%), Positives = 423/722 (58%), Gaps = 46/722 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETGR+A+Q+ G+ LA + T VL+ ++ KD DFFPLTV+ +ER YA G+ Sbjct: 22 RTVRFETGRLAKQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE R IL +R+IDR +RP F K +NE QV+ V+ D + + V+++ Sbjct: 82 IPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVLAIN 141 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183 AAS + ++GLPF GP+ G ++ I+ Q+V PR E ++ ++ V+G T+D Sbjct: 142 AASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDGTED 201 Query: 184 -AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228 A++MVE A +EDVV D + K + EA K+A+ +KE Sbjct: 202 VAIMMVEAGGGKNEWDLIQAGATAPTEDVVADGLEAAKPFIKALCEAQMKVAEKASKETA 261 Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 P+ +D D ++ ++E + I + L K R + +D +K++M+ + E Sbjct: 262 EFPLFLDYTDEEYAAVQEWAGEKIAQALLTEG----KLARDEAVDAVKEEMLEALA-ERF 316 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 E + + F ++ +R L +++RMDGR +R +SA+V +L R HGS+LF RG Sbjct: 317 PEGEKSLKAAFRSLEKATIRGRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRG 376 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQ + V TL EQ +D+LS +M YNF P +TGEV R+G+P RREIGHG L Sbjct: 377 ETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL 436 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A RA+ PVLP FPY +R VSE S+GSSSM +VC S+L+L+ AGVP+ PVAGIAM Sbjct: 437 AERALLPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAM 496 Query: 465 GLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 GL+ DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ A Sbjct: 497 GLMTGEVDGQAKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVLRAA 556 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QA+ RL IL+ +S+ + + ++ PR+ + +P D+I VIG GK+I I ++ Sbjct: 557 LAQARDARLAILDLISQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQDE 615 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA V I+DDGTV IAS+ A EAAR M+ I + +PEV + + G VVK FGAFV Sbjct: 616 TGADVTIEDDGTVYIASADGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGAFVS 675 Query: 639 FCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 +DGL+HISQ + +R+ DV++ G V V++ + DRGK+ L V+D Sbjct: 676 LTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEINEIGDRGKLSLH-AVIDGEA 734 Query: 695 GK 696 G+ Sbjct: 735 GE 736 >gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC 17982] gi|153798723|gb|EDN81143.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC 17982] Length = 781 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 287/725 (39%), Positives = 426/725 (58%), Gaps = 46/725 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ LA + T VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 19 FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL +R+IDR +RP F K +NE QV+ V+ D + + V+ Sbjct: 79 AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AAS + ++GLPF GP+ G ++ I+ Q+V PR E ++ ++ V+G Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198 Query: 181 TQD-AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227 ++D A++MVE A +ED+V D + K + EA K+A+ +K Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDIVADGLEAAKPFIKVLCEAQLKVAEKASK 258 Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 E P+ +D D ++ +EE ++ + + L K R + +D +K++M+ + Sbjct: 259 ETVEFPLFLDYTDEEYAAVEEYAAEKVAQALLTEG----KLARDEAVDAVKEEMLEALA- 313 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 E +E + + F ++ +R L +++RMDGR +R +SA+V +L R HGS+LF Sbjct: 314 ERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALF 373 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + V TL EQ +D+LS +M YNF P +TGEV R+G+P RREIGH Sbjct: 374 QRGETQILGVTTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGH 433 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PVLP FPY +R VSE S+GSSSM +VC S+L+L+ AGVP+ PVAG Sbjct: 434 GDLAERALVPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAG 493 Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGL+ DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 494 IAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVL 553 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QA+ RL IL+ +++ + + ++ PR+ + +P D+I VIG GK+I I Sbjct: 554 RAALAQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQI 612 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 ++TGA V I+DDGTV IASS A EAAR M+ I + +PEV + + G VVK FGA Sbjct: 613 QDETGADVTIEDDGTVYIASSDGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGA 672 Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FV +DGL+HISQ + +R+ DV++ G V V++ + DRGK+ L V+D Sbjct: 673 FVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSLH-AVID 731 Query: 692 QNTGK 696 G+ Sbjct: 732 GEAGE 736 >gi|319441544|ref|ZP_07990700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium variabile DSM 44702] Length = 762 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/727 (39%), Positives = 420/727 (57%), Gaps = 57/727 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L ETG +ARQ+DG+V A + T++L+T + ++ DFFPLTV+ +ER Y Sbjct: 37 DFGTRTLTFETGLLARQADGSVTAYLDDDTMLLSTTTASKHPRENLDFFPLTVDVEERMY 96 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL R+IDR +RP F+K +NE QV++ V+ D E V Sbjct: 97 AAGRIPGSFFRREGRPGTEAILACRLIDRPLRPTFAKGLRNEVQVVVTVLSMDPEDMYDV 156 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180 V++ AASA+ LSGLP GPV G ++ + +GQ+V P R +Q +L V+G Sbjct: 157 VAINAASASTQLSGLPVSGPVGGVRMALVVDEAHADGQWVAFPTREQHEQAVFELVVAGR 216 Query: 181 --------------TQDAVLMVELEANQLSEDVVLDAIIFGHNEC--KPVIEAISK---- 220 D V+++ +EA +E+VV + I G K V E I Sbjct: 217 VSEVKKPRGRRKAVPGDDVVVMMVEAGA-TENVV-ERIAEGAPAPTEKIVAEGIEAARPF 274 Query: 221 LAKMCAKEPIVIDSKDFSKLEE-EMSQMIKED------------LRVSCFIPEKYVRCKQ 267 +A++C + ++D+ + S E E+ ED LR I +K R Sbjct: 275 IAELCGAQAALVDAVEASHAREFELFPAFGEDVYASVESESAEALRGIMAIADKQERD-- 332 Query: 268 IDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325 D L M + + E E EI + ++ ++VR +L R+DGRD+ +RD+ Sbjct: 333 -DALSANMDAAVDALGEQFEGRESEIRNAHNEVSRQIVRERILTDGFRIDGRDTTAIRDL 391 Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT 385 + L+ R HGS+LF RG+TQ + V TL + EQ +DSL ++ HYNF P +T Sbjct: 392 GVMIDLVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPVTSKRYIHHYNFPPYST 451 Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445 GE R+G+P RREIGHG LA RA+ PV+P FPYT+R VSE S+GS+SM +VC S+ Sbjct: 452 GETGRVGSPKRREIGHGALAERALLPVVPSREVFPYTIRQVSEALGSNGSTSMGSVCAST 511 Query: 446 LALMDAGVPISKPVAGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGIT 501 L++ +AGVP+ PVAGIAMGLV DG D ++ L+DI G ED G MDFKVAGT IT Sbjct: 512 LSMYNAGVPLKAPVAGIAMGLVTGEVDGKDTYVTLTDILGAEDAFGDMDFKVAGTADFIT 571 Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561 A+Q+D K+ GI ++ AL QA+ RL IL+ M++ + E ++ +F PR+ + IP + Sbjct: 572 ALQLDTKVDGIPAKVLAEALSQARGARLEILSTMAEAI-EGPEEMSDFAPRITTVKIPQN 630 Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEV 619 +I +IG GK I I E+TGA ++I+DDGTV +++++ EAA + + SI + +P+V Sbjct: 631 KIGELIGPKGKTINQITEETGANISIEDDGTVFVSAAAGKAAEAALDKVNSIANPQLPKV 690 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD 678 + G VVK FGAF+ RDGL+HIS L + RV K D V GD++ V++ D D Sbjct: 691 GDRFLGTVVKTTAFGAFISLLPGRDGLLHISNLGGDRRVEKVEDEVSVGDSLEVEIADID 750 Query: 679 DRGKIKL 685 +RGKI L Sbjct: 751 NRGKISL 757 >gi|300780976|ref|ZP_07090830.1| polyribonucleotide nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532683|gb|EFK53744.1| polyribonucleotide nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] Length = 759 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 289/724 (39%), Positives = 421/724 (58%), Gaps = 55/724 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+ G+V TY +T++L+TV ++G DFFPLTV+ +ER Sbjct: 33 DFGERTIRFETGQLARQAGGSV-TTYLDDDTMLLSTVTASNQPREGFDFFPLTVDVEERM 91 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV++ VM + E Sbjct: 92 YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSWNPEEYYD 151 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180 VV++ ASAA LSGLP G V G ++ I GQ+V P ++ + + ++ V+G Sbjct: 152 VVAINGASAATQLSGLPVSGAVGGVRMALIADDQHPEGQWVAFPNHEQHEAAVFEMVVAG 211 Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----E 216 QD A++MVE A + ++ + G KP I E Sbjct: 212 RIVEKKKGRKKVQDVAIMMVEAGAGANAVKLIDGGAPAPTERTVAEGLEAAKPFIQTLCE 271 Query: 217 AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF----IPEKYVR----CKQI 268 A + LA AKE D F +E+ +++ IP K+ R + + Sbjct: 272 AQNALADKSAKE--TQDFPLFPPYSDEVFDAVEKKASKKLSKLLTIPGKHERDDATNEYM 329 Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328 ++++ ++ F+ E +S EI + + + ++VR +L + R+DGR +RD+ + Sbjct: 330 EEIEADLLETFAGEDASK---EIRAAYNAVMKQIVRDKILSEGFRIDGRGVTDIRDLEVE 386 Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388 V L+ R HGSSLF RG+TQ + V TL + EQ +DSL ++ HYNF P +TGE Sbjct: 387 VELIPRAHGSSLFERGETQILGVTTLDMLKMEQQLDSLHPETSKHYIHHYNFPPYSTGET 446 Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448 R+G+P RREIGHG LA RA+ PV+P FPYT+R VSE S+GS+SM +VC S+L+L Sbjct: 447 GRVGSPKRREIGHGALAERALIPVIPSKEDFPYTIRQVSEALGSNGSTSMGSVCASTLSL 506 Query: 449 MDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504 +AGVP++ PVAGIAMGLV DG+ ++ L+DI G ED G MDFKVAGT ITA+Q Sbjct: 507 YNAGVPLAAPVAGIAMGLVSGEVDGETKYVALTDILGAEDAFGDMDFKVAGTSEFITALQ 566 Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564 +D K+ GI +++ AL QAK R IL+ M++V+ E ++ P++ + +P +I Sbjct: 567 LDTKLDGIPSDVLASALDQAKEARETILDTMAEVI-EGPDEMSALAPKITTVRVPVSKIG 625 Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKI 622 VIG GK I I E TGA V+I+DDGT+ +++++ +AA E I SI + P+V + Sbjct: 626 EVIGPKGKTINQITEDTGADVSIEDDGTIYVSAATGEAADAAIEQINSIANPQQPKVGER 685 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRG 681 Y G VVK + FGAFV RDGLVHIS+L + R+ DVV GD + V++ D D+RG Sbjct: 686 YLGTVVKTVAFGAFVSLTPGRDGLVHISKLGGDKRIENVEDVVNVGDKIEVEIADIDNRG 745 Query: 682 KIKL 685 KI L Sbjct: 746 KISL 749 >gi|329944611|ref|ZP_08292751.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530164|gb|EGF57047.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 790 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 282/723 (39%), Positives = 420/723 (58%), Gaps = 48/723 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A GET VL+ + KD DFFPLTV+ +ER YA Sbjct: 20 FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL R+IDR +RP F K +NE QV+ V+ + V+ Sbjct: 80 AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183 ++ AAS + ++GLPF GPV G ++ I+G +V PR E Q + + V+G + D Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199 Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227 A++MVE A + + +++ +A++ G KP I+A+ + +K A+ Sbjct: 200 AIMMVEAGATEHAWELINAGSVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259 Query: 228 EPIVIDSKD--FSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 P+ +D D + +E+ ++ I + + + + VR D++ ++ F Sbjct: 260 FPLYLDYSDEQYDAVEKAAEAHGLAGAIATEGKQARDLATDAVR----DEVLAELAESFP 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 +E + + + F + K+VR L + VRMDGR + +R ++A+V +L R HGS++ Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ VD LS +M +YNF P +TGE R+GAP RREIG Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVA Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492 Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL V DG+ + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ + Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ +++ + +S ++ PRV + IP D+I VIG GK+I Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DSPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA + ++DDGTV I +S EAAR+ + +I + +PE+ + + G VVK FG Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AFV +DGL+HISQ+ +RV DV+ GD V V+L + D RGK+ L + Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731 Query: 691 DQN 693 D+ Sbjct: 732 DEQ 734 >gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 719 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 271/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIKL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++ + Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR I+ + +L HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + ++ + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEA-AKKIIVNEEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|227504840|ref|ZP_03934889.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium striatum ATCC 6940] gi|227198531|gb|EEI78579.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium striatum ATCC 6940] Length = 746 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/717 (39%), Positives = 422/717 (58%), Gaps = 45/717 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG +ARQ+ G+V E T++L+T ++G DFFPLTV+ +ER Y Sbjct: 28 DFGTRTIRFETGLLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 87 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV++ V+ E V Sbjct: 88 AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMAPEEYYDV 147 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG- 180 +++ ASA+ LSGLP G V G ++ I GQ+V P ++ + +L ++ V+G Sbjct: 148 IAINGASASTQLSGLPVSGAVGGVRMALIADDKHPKGQWVAFPNHEQHERALFEMVVAGR 207 Query: 181 ------TQD-AVLMVELEA-NQLSEDVVLDA-------IIFGHNECKPVI----EAISKL 221 +D A++MVE A ++E + A + G KP I EA + L Sbjct: 208 IVKKGNKEDVAIMMVEAGAGTNVAERIKEGAPAPQESTVAEGLEAAKPFIKTLCEAQAGL 267 Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275 A+ AKE P+ D F+ +E+ S+ +++ L + + ++ ++ + Sbjct: 268 AERAAKETQEFPLFPPYTDDVFAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEADL 327 Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335 F E +S +I + + + +VR +L + R+DGR +RD+ +V L+ R Sbjct: 328 HEKFEDEDASK---QIRAAYNAVMKAIVRKKILTEGFRIDGRGVTDIRDLGVEVDLIPRA 384 Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395 HGSSLF RG+TQ + V TL + EQ +DSL+ +M HYNF P +TGE R+G+P Sbjct: 385 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVTGKRYMHHYNFPPYSTGETGRVGSPK 444 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +VC S+L+L +AGVP+ Sbjct: 445 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 504 Query: 456 SKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 PVAGIAMGLV DG + F+ L+DI G ED G MDFKVAGT ITA+Q+D K+ G Sbjct: 505 KAPVAGIAMGLVSGEVDGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLDG 564 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I ++ AL+QA+ R IL+ M++V+ E ++ P++ + IP ++I +IG G Sbjct: 565 IPSKVLAQALEQARDARATILDTMAEVI-EGPDEMSGLAPKITSVKIPVNKIGELIGPKG 623 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K I I E+TGA+V+I++DGTV I++++ +AA E + SI + +P+V + + G VVK Sbjct: 624 KTINSITEETGAEVSIEEDGTVYISAATGEAADAAIEKVNSIANPQLPKVGERFLGTVVK 683 Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 + FGAFV RDGL+HIS+L ER+ K DVV GD + V++ D D+RGKI L Sbjct: 684 TVAFGAFVSLTPGRDGLIHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 740 >gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] Length = 717 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 283/720 (39%), Positives = 426/720 (59%), Gaps = 76/720 (10%) Query: 22 RIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80 ++A+Q+ G+VL G++VVLATV D+ ++ +DF PLTV Y E+ YAVG+IPGGY++R Sbjct: 18 KVAKQAAGSVLMRVGKSVVLATVAREDKQVE--EDFLPLTVQYIEKAYAVGRIPGGYIKR 75 Query: 81 ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140 E++P +NE L +R+IDRS+RPLF K Y TQ+++ V+ D E V+S+ AAS AL L Sbjct: 76 ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVALYL 135 Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA------- 192 SG+P + PV G ++ IN ++VLNP + + +LDL+V+G +D +LM+E+ A Sbjct: 136 SGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKDELLMIEMRALPSESEG 195 Query: 193 ----------------------NQLSEDVVLDA-------IIFGHNECKPVIEAISKLAK 223 N+LSED +L A I+ G N + EA K K Sbjct: 196 EAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAILNGSNAYE---EAFFKHRK 252 Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 E +L + + Q ++++ + K R +++ + K+++ + Sbjct: 253 KEELELKEELEN--RELFDYIKQNFTKEVQFAINQMAKSERASELEKIAKELMK-LENII 309 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 +N+ ++ + ++ +++RT +L ++ R DGR VR I + +L HGS LF R Sbjct: 310 DKYNQEDVFNALSKVKKELIRTQILKERKRADGRALNEVRAIEIETNILPNAHGSCLFTR 369 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPSRREI 399 G TQA+VV TLG D Q VD LS ++N FM++YNF + GE S + AP RRE+ Sbjct: 370 GQTQALVVATLGGENDAQMVDLLS--EKNPISERFMVNYNFPGFSVGEASPIKAPGRREL 427 Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459 GHG L +RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGV K V Sbjct: 428 GHGNLVKRALYPSVDEN--YPYVVRLVSEILESNGSSSMATVCGGSLALRAAGVSSIKLV 485 Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 AG+AMGLV +GD++ IL+DI G EDH G MDFKVAGT GITA+QMD+K+GGI ENI+ Sbjct: 486 AGVAMGLVLEGDEYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGIDENILKN 545 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 AL QA+ RLHIL+ M + S+ + E P++E+ ++ P +I ++IG GK I+ I+E Sbjct: 546 ALYQAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIGQAGKTIKEIIE 604 Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEV-----------NKIYKGQV 627 + G +++D + G VKIA + +I+AA++ I SIT + + ++ +V Sbjct: 605 KFGVSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKNLTQFKIGEEFFEAEV 664 Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 KV FGAFV DGL+H S++ T+ + E D V VK+ + + GKI + + Sbjct: 665 KKVAPFGAFVGLKDGVDGLLHSSKMKTK--------LSENDKVDVKISEIKN-GKISVDL 715 >gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545] Length = 823 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 288/728 (39%), Positives = 421/728 (57%), Gaps = 57/728 (7%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 +ETG+I +Q++GAV+ + GET + T+ R + F PLTVNY ER A G+ GGY Sbjct: 36 VETGKIGKQANGAVIVSEGETQMYVTICAGRDVVADGGFVPLTVNYMERFSAAGRTSGGY 95 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 +R+ E+E LI R++DR +RP+ K + ETQ++ V+ +D S +++ AASAA Sbjct: 96 RKRDGGVREHETLIGRLVDRPLRPMIPKAWAYETQILQWVLSYDGNRSTDALAITAASAA 155 Query: 138 LMLSGLPFEGPVVGAQVDYINGQY--VLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 +S +P PV G +V ++ G ++NP ++ + S LDL ++GT+DAV+M+E + Sbjct: 156 AAVSDVPLSKPVCGVRVGFLPGDATPIVNPTTEQMENSRLDLLLAGTEDAVMMIEGYGDF 215 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMSQMIKED 251 LS D ++ AI GH V +SK A K ++ + D + E + + ++ Sbjct: 216 LSVDEMITAIAAGHAAIASVCRELSKWAAEVGKAKATERLLTAPD--GIYESVKAAVGDE 273 Query: 252 LRVSCFIPEKYVRCKQIDDLKKK---MVSYFSSE-------------------------- 282 L V+ I +K +R ++ L+ K MVS E Sbjct: 274 LAVAMAIGKKQIRGAAVERLRSKAIEMVSGLDKENAAYKASARAAQLPSAHMHALLKPRA 333 Query: 283 -----------HSSWNEGEIVSV-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 H + E V + E I+++ +R ++ + R DGRD TVR IS + G Sbjct: 334 LRTHARPTLGSHPGTSGPEDVRLACEKIESEALRDMIRSRGTRQDGRDVYTVRPISCEGG 393 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L RTHGSSLF RG+TQAI TLG++ D Q D ++ F +HY F P + GE R Sbjct: 394 FLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDDRRFYLHYFFPPSSVGECGR 453 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 +GA SRRE+GHG LA RA+ PVLP +FP+T+R+ S ITES+GSSSMATVC LAL D Sbjct: 454 VGAASRREVGHGNLAERALAPVLPSKDEFPFTVRLESTITESNGSSSMATVCAGCLALQD 513 Query: 451 AGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 AGVPI + VAGIAMGLV G+D I+L+DI G ED LG MDFKVAG G++A QMD Sbjct: 514 AGVPIRRKVAGIAMGLVLGDETKGEDAIVLTDILGSEDALGDMDFKVAGDGEGMSAFQMD 573 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL--QLGEFTPRVEIMAIPPDQIR 564 +K+ GIS +M AL++A+ G +HIL EM K R ++ ++ PR+E++ + I Sbjct: 574 IKVEGISLPVMRTALERAREGLIHILGEMDKADPSPRKGGEMSKYAPRIEVVEVNTKYIG 633 Query: 565 NVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623 +IG GG+ I+ I E+T ++I++DG + S ++ A E+I +T PE+ KIY Sbjct: 634 KIIGKGGEQIKSICEETRIDTIDINNDGVCVLTGSYGCDMARALEIIAELTIEPEIGKIY 693 Query: 624 KG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 + +V KV++FGAFV +GL H+S+L RVA DVV +GD + VKLL+ ++RG+ Sbjct: 694 RNSRVTKVLEFGAFVEILPGVEGLCHVSELDVTRVANVKDVVNDGDFIDVKLLETNERGQ 753 Query: 683 IKLSMKVV 690 KLS + V Sbjct: 754 YKLSRREV 761 >gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa] gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa] Length = 961 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 273/700 (39%), Positives = 407/700 (58%), Gaps = 24/700 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E R + ETG+IAR ++G+V+ ET VL+TV + +DF PLTV+YQE+ Sbjct: 59 EFEIGSRLITFETGKIARFANGSVVLGMEETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 117 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 +A G IP YLRRE P E E+L R+IDR IRPLF + +E QV+ +V+ D P Sbjct: 118 FAQGVIPSTYLRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGRRDPD 177 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V++ A SAALMLS +P+ GP+ ++ I GQ+V+NP +DE L+L + T+D L Sbjct: 178 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSLSDLNLVYACTKDKTL 237 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KL 240 M++++A ++E + + H E +E +LA K KD+ + Sbjct: 238 MIDVQAGGIAEKDLEAGLRLAHPEAVKYLEPQIRLAAKAGKH-----KKDYKLSLVSDRT 292 Query: 241 EEEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E++ + + + P K+ R + +D++ ++ E + + + V + + Sbjct: 293 LEKVRNLTEAKIEAVFTDPSYGKFERGEALDNIAQEAKRTLEEECDTESLTVLSKVVDRV 352 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VVR ++ + R+DGR + VR + + G L HGSSLF RGDTQ + VTLG Sbjct: 353 RKGVVRNRIIAEGFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPR 412 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +DSL G FM+HY+F P + EV + +RRE+GHG LA +A+ VLP Sbjct: 413 DAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDD 472 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471 FPYT+RI SE+ SDGS+SMATVCG S+A+MDAG+P+ + VAG+++GLV + D Sbjct: 473 FPYTVRINSEVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 532 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D+ I++DI G EDHLG MDFK+AGT G+TA+Q+D+K GI +I+ L+ A +GRL I Sbjct: 533 DYRIVTDILGLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQI 592 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L M + +S R Q +PR+ + D +R +IG G + R I E TGA++++ D+ Sbjct: 593 LARMDQEISAPRTQDHRNSPRLATLKFSNDALRRLIGPLGVLKRKIEEDTGARMSVSDE- 651 Query: 592 TVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 T+ I + + +E +E I I EV IYKG V + ++GAFV F G + GL+H+S Sbjct: 652 TLTILAKNQTVLERVQEKIDFIIGREIEVGGIYKGIVSSIKEYGAFVEFNGGQQGLLHVS 711 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +LS E V+K SDV+ G + + + D RG IKLS+K Sbjct: 712 ELSHEPVSKISDVISVGQQLSLMCIGQDVRGNIKLSLKAT 751 >gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. doylei 269.97] gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 718 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 273/693 (39%), Positives = 410/693 (59%), Gaps = 83/693 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ G VL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQATG-VLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 75 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 76 TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 135 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 136 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 195 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 196 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 255 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K +++ ++QM K + R +++ + K++++ Sbjct: 256 KNEIEHPEILAFIENNFQKQIKKAINQMAKSE------------RASELNKIAKEILNLE 303 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E I++ ++ K++R +L++ R DGR VR IS + +L HGS Sbjct: 304 IAK--DWSEESILNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 361 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 362 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 419 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 420 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 477 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ GITA+QMD+K+GGI + Sbjct: 478 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQE 537 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + E + E P++E+ ++ P +I ++IG GK I+ Sbjct: 538 TLKQALYQAKEGRIHILNIMEEATKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 596 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ E+ Sbjct: 597 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFEL 656 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + ++G V K+ FGAFV DGL+H S++ Sbjct: 657 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 689 >gi|312139341|ref|YP_004006677.1| polyribonucleotide nucleotidyltransferase pnp [Rhodococcus equi 103S] gi|311888680|emb|CBH47992.1| polyribonucleotide nucleotidyltransferase Pnp [Rhodococcus equi 103S] Length = 752 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/716 (39%), Positives = 427/716 (59%), Gaps = 50/716 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ D + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSG-- 180 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ + D+ V+G Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204 Query: 181 --TQD-AVLMVELEANQLSEDVV----------LDAIIF-GHNECKPVIEAI-------- 218 + D A++MVE EA +E+V+ +AI+ G KP I ++ Sbjct: 205 VESGDVAIMMVEAEA---TENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALA 261 Query: 219 SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276 K AK + P+ +D ++ +E+ + + E L ++ K R + D++K +++ Sbjct: 262 EKAAKPTGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAG----KQERDDKTDEVKAEVL 317 Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336 + + E EI + F + K+VR +L + R+DGR +R +SA+V ++ R H Sbjct: 318 EQVAPQFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAH 376 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 GS+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P R Sbjct: 377 GSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKR 436 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 437 REIGHGALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLK 496 Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT + +TA+Q+D K+ GI Sbjct: 497 APVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGI 556 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 ++ AL QA R IL M++ + ++ ++ + PR+ + +P D+I VIG GK Sbjct: 557 PSQVLAGALSQAHDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGK 615 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I E+TGA ++I+DDGTV + ++ +AA + I +I + +P+V + + G VVK Sbjct: 616 MINSITEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKT 675 Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L +R+AK DVV G + V++ D D+RGKI L Sbjct: 676 TAFGAFVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731 >gi|325672779|ref|ZP_08152475.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC 33707] gi|325556656|gb|EGD26322.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC 33707] Length = 752 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/716 (39%), Positives = 427/716 (59%), Gaps = 50/716 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ V+ D + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSG-- 180 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ + D+ V+G Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204 Query: 181 --TQD-AVLMVELEANQLSEDVV----------LDAIIF-GHNECKPVIEAI-------- 218 + D A++MVE EA +E+V+ +AI+ G KP I ++ Sbjct: 205 VESGDVAIMMVEAEA---TENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALA 261 Query: 219 SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276 K AK + P+ +D ++ +E+ + + E L ++ K R + D++K +++ Sbjct: 262 EKAAKPAGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAG----KQERDDKTDEVKAEVL 317 Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336 + + E EI + F + K+VR +L + R+DGR +R +SA+V ++ R H Sbjct: 318 EQVAPQFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAH 376 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 GS+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P R Sbjct: 377 GSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKR 436 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 437 REIGHGALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLK 496 Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT + +TA+Q+D K+ GI Sbjct: 497 APVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGI 556 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 ++ AL QA R IL M++ + ++ ++ + PR+ + +P D+I VIG GK Sbjct: 557 PSQVLAGALSQAHDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGK 615 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630 +I I E+TGA ++I+DDGTV + ++ +AA + I +I + +P+V + + G VVK Sbjct: 616 MINSITEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKT 675 Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L +R+AK DVV G + V++ D D+RGKI L Sbjct: 676 TAFGAFVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731 >gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] Length = 719 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 270/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GAVL G++VVLATV + + +DF PLTV Y E+ YA GKIPGGY++RE Sbjct: 18 KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P++ E L +R+IDRS+RPLF K Y TQ+++ V+ D + V+S+ AAS AL LS Sbjct: 77 TKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192 +P + PV G ++ I+G ++LNP +E Q S LDL+V+G +D +LM+E+ A Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196 Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226 N+LSED +L+A+ N EA SK K Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256 Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 E + +F K ++E ++QM K + R +++ + K++ + Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E +++ ++ K++R +L++ R DGR VR I+ + +L HGS Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAHGSC 362 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395 LF RG TQA+VV TLG D Q +D L T++N FM++YNF + GE S + AP Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420 Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 RRE+GHG LA+RA++P + + +PY +R+VSEI ES+GSSSMATVCG SLAL AGVP Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+ G+TA+QMD+K+GGI + Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 + AL QAK GR+HILN M + ++ + E P++E+ ++ P +I ++IG GK I+ Sbjct: 539 TLKQALYQAKEGRIHILNIMEEA-AKKIIVNEEVLPKLELFSVDPSKIVDIIGQAGKTIK 597 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619 I+E+ G +++D + G VKIA S +I+AA++ I +IT D+ ++ Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFKL 657 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + ++G V K+ FGAFV DGL+H S+ Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689 >gi|111023614|ref|YP_706586.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus jostii RHA1] gi|123339641|sp|Q0S208|PNP_RHOSR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110823144|gb|ABG98428.1| polyribonucleotide nucleotidyltransferase [Rhodococcus jostii RHA1] Length = 757 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 291/715 (40%), Positives = 420/715 (58%), Gaps = 44/715 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM + + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDL-----F 177 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ + D+ Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204 Query: 178 VSGTQD----AVLMVELEA--NQLS-----EDVVLDAIIF-GHNECKPVIEAI------- 218 VSG+ D A++MVE EA N +S +AI+ G KP I + Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTEAIVAEGLEAAKPFIARLCTAQQQL 264 Query: 219 -SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277 +K +K P+ +D + + E L + I K R + D++K +++ Sbjct: 265 AAKASKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKVEVLE 322 Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337 + E E+ + F + K+VR +L + R+DGR +R +SA+V ++ R HG Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVPRAHG 381 Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 S+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+P RR Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 EIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGVP+ Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLKA 501 Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513 PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561 Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573 ++ AL QAK R IL M++ + ++ ++ F PRV + +P D+I VIG GK+ Sbjct: 562 SKVLAGALSQAKDARATILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620 Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631 I I EQTGA ++I+DDGTV + ++ +AA +MI +I + +P+V + + G VVK Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680 Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAFV RDGLVHIS+L S +R+AK DVV G + V++ D D+RGKI L Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735 >gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces odontolyticus F0309] gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces odontolyticus F0309] Length = 781 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/725 (39%), Positives = 427/725 (58%), Gaps = 46/725 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ LA + T VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 19 FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL +R+IDR +RP F K +NE QV+ V+ D + + V+ Sbjct: 79 AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180 ++ AAS + ++GLPF GP+ G ++ I+ Q+V PR E ++ ++ V+G Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198 Query: 181 TQD-AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227 ++D A++MVE A +EDVV D + K + EA K+A+ +K Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKPFIKVLCEAQLKVAEKASK 258 Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281 E P+ +D D ++ +E+ ++ + + L K R + +D +K++M+ + Sbjct: 259 ETVEFPLFLDYTDEEYAAVEDYAAEKVAQALLTEG----KLARDEAVDAVKEEMLEALA- 313 Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341 E +E + + F ++ +R L +++RMDGR +R +SA+V +L R HGS+LF Sbjct: 314 ERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALF 373 Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG+TQ + + TL EQ +D+LS +M YNF P +TGEV R+G+P RREIGH Sbjct: 374 QRGETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGH 433 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RA+ PVLP +FPY +R VSE S+GSSSM +VC S+L+L+ AGVP+ PVAG Sbjct: 434 GDLAERALVPVLPSREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAG 493 Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 IAMGL+ DG + L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 494 IAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVL 553 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QA+ RL IL+ +++ + + ++ PR+ + +P D+I VIG GK+I I Sbjct: 554 RAALAQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQI 612 Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635 ++TGA V I+DDGTV IASS A +AAR M+ I + +PEV + + G VVK FGA Sbjct: 613 QDETGADVTIEDDGTVYIASSDGASADAARTMVNQIANPQMPEVGERFVGTVVKTTSFGA 672 Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 FV +DGL+HISQ + +R+ DV++ G V V++ + DRGK+ L V+D Sbjct: 673 FVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSLH-AVID 731 Query: 692 QNTGK 696 G+ Sbjct: 732 GEAGE 736 >gi|226366103|ref|YP_002783886.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus opacus B4] gi|257096705|sp|C1B324|PNP_RHOOB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226244593|dbj|BAH54941.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase [Rhodococcus opacus B4] Length = 757 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 292/719 (40%), Positives = 419/719 (58%), Gaps = 52/719 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV+A ET++L+ + K+ DFFPLTV+ +ER YA Sbjct: 25 FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F +NE QV++ VM + + VV Sbjct: 85 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDL-----F 177 ++ AASA+ ++GLPF GPV G +V I GQ+V P +++ + D+ Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204 Query: 178 VSGTQD----AVLMVELEA--NQLS----------EDVVLDAIIFGHNECKPVIEAIS-- 219 VSG+ D A++MVE EA N +S E +V + G KP I + Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTETIVAE----GLEAAKPFIARLCTA 260 Query: 220 ------KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273 K AK P+ +D + + E L + I K R + D++K Sbjct: 261 QQQLAVKAAKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKV 318 Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333 +++ + E E+ + F + K+VR +L + R+DGR +R +SA+V ++ Sbjct: 319 EVLEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVP 377 Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393 R HGS+LF RG+TQ + V TL + Q VDSL +M HYNF P +TGE R+G+ Sbjct: 378 RAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGS 437 Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453 P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+LAL++AGV Sbjct: 438 PKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGV 497 Query: 454 PISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 P+ PVAGIAMGLV D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ Sbjct: 498 PLKAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKL 557 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GI ++ AL QAK R IL M++ + ++ ++ F PRV + +P D+I VIG Sbjct: 558 DGIPSKVLAGALSQAKDARATILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGP 616 Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627 GK+I I EQTGA ++I+DDGTV + ++ +AA +MI +I + +P+V + + G V Sbjct: 617 KGKMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTV 676 Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 VK FGAFV RDGLVHIS+L S +R+AK DVV G + V++ D D+RGKI L Sbjct: 677 VKTTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735 >gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis ATCC BAA-381] gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter hominis ATCC BAA-381] Length = 711 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 276/713 (38%), Positives = 411/713 (57%), Gaps = 60/713 (8%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 E ++A+Q+ GA L TVVLATV + + + +DF PLTV Y E+ YA G+IPGGY Sbjct: 14 FEINKVAKQAAGACLMKVKNTVVLATVARENTQVE-EDFLPLTVQYIEKQYAAGRIPGGY 72 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 ++RE++P + E L SR+IDRS+RPLF K Y TQ+++ V+ D E VV + AAS A Sbjct: 73 IKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEIDLQVVGLNAASVA 132 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192 L LS +P + PV G +V YIN +V+NP E Q S LDL+V+G +D +LM+E+ + Sbjct: 133 LYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEMLMIEMRSLPNM 192 Query: 193 -------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 N+ SED +++AI F G + A+ K +P V D + Sbjct: 193 NGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAALEYKPEVEDENIAN 252 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 +E+ + D++ + K R ++D + K++ ++ + W + + ++ Sbjct: 253 FIEQNFTS----DVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQKNVVSNIIGKF 308 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + K++R+ +++++ R DGR + +R IS + +L HGS LF RG TQA+VV TLG Sbjct: 309 KRKIIRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGET 368 Query: 359 DEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q DSL+ FM YNF GE S + +P RRE+GHG LA+RA+ P +P Sbjct: 369 DAQVSDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAKRALTPSVPLN 428 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 P +R VSEI ES+GSSSMA+VCG SL+L AGV K VAG+AMGL+ + D IL Sbjct: 429 N--PQVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAIL 486 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI G EDH G MDFKVAGT GITA+QMD+K+GGIS I+ AL QAK GR +ILN M Sbjct: 487 TDIMGLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKDGRNYILNLM- 545 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKI 595 +V ++ + E P++EI + P+++ ++IG GGK I+ ++++ ++++ D G VKI Sbjct: 546 EVANDDIIINEEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSIDLERDSGEVKI 605 Query: 596 ASSSLAEIEAAREMIRSI---------------------TDVPEVNKIYKGQVVKVMDFG 634 ++ +E A+ I +I T +V + + G V K+MDFG Sbjct: 606 QGANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKETSNFQVGEEFDGVVKKIMDFG 665 Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 AF+ DGL+H+S++ T+ + EGDT+ VK+ + RGKI L + Sbjct: 666 AFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEI-KRGKISLEL 709 >gi|325067095|ref|ZP_08125768.1| polynucleotide phosphorylase/polyadenylase [Actinomyces oris K20] Length = 770 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A GET VL+ + KD DFFPLTV+ +ER YA Sbjct: 20 FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL R+IDR +RP F K +NE QV+ V+ + V+ Sbjct: 80 AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183 ++ AAS + ++GLPF GPV G ++ I+G +V PR E Q + + V+G + D Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199 Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227 A++MVE A + + +++ +A++ G KP I+A+ + +K A+ Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259 Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 P+ +D D + +E+ I + + + + VR D++ ++ F Sbjct: 260 FPLYLDYTDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 +E + + + F + K+VR L + VRMDGR + +R ++A+V +L R HGS++ Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ VD LS +M +YNF P +TGE R+GAP RREIG Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVA Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492 Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL V DG+ + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ + Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ +++ + ++ ++ PRV + IP D+I VIG GK+I Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DAPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA + ++DDGTV I +S EAAR+ + +I + +PE+ + + G VVK FG Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AFV +DGL+HISQ+ +RV DV+ GD V V+L + D RGK+ L + Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731 Query: 691 DQN 693 D+ Sbjct: 732 DEQ 734 >gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] Length = 705 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 275/689 (39%), Positives = 407/689 (59%), Gaps = 15/689 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG++A+ + GAV+ GET VL TVV D L G+DF PL V Y+E++YA GKIP Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 ++RRE P E E+L R+IDRSIRPLF K Y ETQ++ NV+ D E P +++ AAS Sbjct: 75 TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLCSDGEQDPDILAANAAS 134 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AAL LS +P+ GP+ ++ ++G++V+NP +D GS L+L S T + LM+E +A + Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDL 252 ++ A+ H+E +IE +LA K P+ + D L E++ + +E + Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDVPVL-EKIRGLSEEHI 253 Query: 253 RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + P K+ R K + + + E+ F+ ++ ++VR + K Sbjct: 254 KAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQK 313 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 +R+DGR VRD+ + G+ HGSSLF RG+TQ + VTLG ED Q +DS+ G Sbjct: 314 NIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPP 373 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL-PQTAQFPYTLRIVSEI 429 + FM+HY+F P + EV ++G +RRE+GHG LA +A+ +L P+ FPY++R+ SE+ Sbjct: 374 KKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEV 433 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGD 482 SDGSSSMATVCG SLALMDAG+P+ VAGI++GL+ + D ++ IL+DI G Sbjct: 434 MASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLMTNVDAETGEIKNYKILTDILGL 493 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFK+AGT G+TA+Q+D+K+ G+ +I+ AL+ A R IL+ M K +S+ Sbjct: 494 EDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKP 553 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + TPR + I + I +IG G IR + +GA++ + +DG V I S S Sbjct: 554 RDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKS 613 Query: 603 IEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 + A+ MI ++ V + Y G V + DFGAF+ F G + GL+HIS++S E V + Sbjct: 614 FKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVTAIA 673 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 DV+ G + V D RG +K S K V Sbjct: 674 DVLSVGQQITVLCTGRDFRGNLKFSRKAV 702 >gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus 525.92] gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter curvus 525.92] Length = 735 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 277/703 (39%), Positives = 406/703 (57%), Gaps = 73/703 (10%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 + ++A+Q+ GAV+ TVVLATV D ++ +DF PLTV Y E+ YA G+IPGGY Sbjct: 14 FDLNKVAKQAAGAVMLRVKNTVVLATVARD-DVQVEEDFLPLTVQYIEKAYAAGRIPGGY 72 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 ++RE++P + E L +R+IDRS+RPLF K Y TQ+++ V+ D E VV + AAS A Sbjct: 73 VKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVGLNAASVA 132 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192 L LS +P PV G +V YI+ ++V+NP E + S LDL+V+GT+D +LM+E+ + Sbjct: 133 LYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDELLMIEMRSIAQQ 192 Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 N+ SED +++AI F A + K Sbjct: 193 SSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILRASNAYEEAFKE 252 Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 KE +++ K ++E E + + K D++ + K R ++ + K++ S Sbjct: 253 HKKEDAILELK--PEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGKIAKQIASDE 310 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W EG I +V + K+VR ++++ VR DGR + VR IS + +L HGS Sbjct: 311 VAQKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETNVLPNAHGSC 370 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRR 397 LF RG TQA+VV TLGT D Q D L+ FM +YNF + GE S + AP RR Sbjct: 371 LFTRGQTQALVVATLGTDGDAQMYDILTEKTALIEKFMFNYNFPGFSVGEASPLKAPGRR 430 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 E+GHG LA+RA+ P + + PYT+R+VSEI ES+GSSSMA+VCG +LAL AGV K Sbjct: 431 ELGHGNLAKRALAPSIDINS--PYTIRLVSEILESNGSSSMASVCGGALALRAAGVDTQK 488 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 VAG+AMGL+ +GD +L+DI G EDH G MDFKVAG+ GITA+QMD+K+GGIS ++ Sbjct: 489 LVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIKLGGISLEVL 548 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 AL QAKRGR HILN M + ++S++++ E P++E+ ++ P +I ++IG GK I+ Sbjct: 549 KEALYQAKRGREHILNLMHQ--ADSKIEVNEDVLPKLELFSVDPSKIVDIIGQAGKTIKE 606 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615 I+E+ +++D + G VKIA + ++AA++ I SIT Sbjct: 607 IIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPHGHDRRDKD 666 Query: 616 --VPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 P N + G V V+DFGAF+ DGL+HIS++ T Sbjct: 667 RQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHISKIKT 709 >gi|320533267|ref|ZP_08033971.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134517|gb|EFW26761.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 785 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A GET VL+ + KD DFFPLTV+ +ER YA Sbjct: 20 FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL R+IDR +RP F K +NE QV+ V+ + V+ Sbjct: 80 AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183 ++ AAS + ++GLPF GPV G ++ I+G +V PR E Q + + V+G + D Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199 Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227 A++MVE A + + +++ +A++ G KP I+A+ + +K A+ Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259 Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 P+ +D D + +E+ I + + + + VR D++ ++ F Sbjct: 260 FPLYLDYSDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 +E + + + F + K+VR L + VRMDGR + +R ++A+V +L R HGS++ Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ VD LS +M +YNF P +TGE R+GAP RREIG Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RAI PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVA Sbjct: 433 HGNLAERAIVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492 Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL V DG+ + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ + Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ +++ + ++ ++ PRV + IP D+I VIG GK+I Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DTPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA + ++DDGTV I +S +AAR+ + +I + +PE+ + + G VVK FG Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSADAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AFV +DGL+HISQ+ +RV DV+ GD V V+L + D RGK+ L + Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731 Query: 691 DQN 693 D+ Sbjct: 732 DEQ 734 >gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii] gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii] Length = 808 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 273/725 (37%), Positives = 413/725 (56%), Gaps = 55/725 (7%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H+V I R + LETG I RQ+ GAV + GET++ TV + DF PL V+Y Sbjct: 68 HSVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER A G+ GG+ +RE +P ++E+ ISR++DR +RP+ K Y +E QV+ V+ +D Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSYDGSH 187 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +++ AA AAL LS +P PV G +V YING+YVLNP E + SLD+ ++GT D Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIMAGTSD 247 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEE 242 +LM+E N LSED ++ A+ G K + + + + K K+ I+ S LEE Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289 + +++ +DL ++ I K R I L+KK+ S + E + W+E Sbjct: 308 RIKEIVGDDLYLALHIRGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367 Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320 EI F++ +K +++++ +KVR DGR Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427 Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-GTQRNDFMMHYN 379 VR IS LL R HGS++F RG+TQA+V V LG Q +D ++ + F + Y Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487 Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439 F GEV R+G SRREIGHGRL R++ P+ P ++FPYT+R+ S ITES+GSSSMA Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFP--SKFPYTVRVESTITESNGSSSMA 545 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493 +VCG+ LAL DAGVP+ P+AG+AMGL+ D ++ +IL+DI G ED G MD KV Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605 Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553 AG+ GITA QMD+K+ GI+ +I+ AL +AK R HIL EM+ +L + + Sbjct: 606 AGSKEGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665 Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612 + + + +++ V+G GGK +R I++ +G + V++ DG+++I +++ A E IRS Sbjct: 666 DFVKVGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725 Query: 613 ITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 IT P V +Y+ VK + FG F+ R+GL HIS+L+T R+++ + V G+ + Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785 Query: 672 VKLLD 676 VK+++ Sbjct: 786 VKVIE 790 >gi|326771722|ref|ZP_08231007.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus C505] gi|326637855|gb|EGE38756.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus C505] Length = 785 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A GET VL+ + KD DFFPLTV+ +ER YA Sbjct: 20 FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE R IL R+IDR +RP F K +NE QV+ V+ + V+ Sbjct: 80 AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183 ++ AAS + ++GLPF GPV G ++ I+G +V PR E Q + + V+G + D Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199 Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227 A++MVE A + + +++ +A++ G KP I+A+ + +K A+ Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259 Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 P+ +D D + +E+ I + + + + VR D++ ++ F Sbjct: 260 FPLYLDYTDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 +E + + + F + K+VR L + VRMDGR + +R ++A+V +L R HGS++ Sbjct: 316 TEEDTRA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ VD LS +M +YNF P +TGE R+GAP RREIG Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVA Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492 Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL V DG+ + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ + Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ +++ + ++ ++ PRV + IP D+I VIG GK+I Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DAPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA + ++DDGTV I +S EAAR+ + +I + +PE+ + + G VVK FG Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AFV +DGL+HISQ+ +RV DV+ GD V V+L + D RGK+ L + Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731 Query: 691 DQN 693 D+ Sbjct: 732 DEQ 734 >gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii] gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii] Length = 806 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 275/725 (37%), Positives = 411/725 (56%), Gaps = 55/725 (7%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 H V I R + LETG I RQ+ GAV + GET++ TV + DF PL V+Y Sbjct: 68 HCVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER A G+ GG+ +RE +P ++E+ ISR++DR +RP+ K Y +E QV+ V+ D Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSFDGLH 187 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 P +++ AA AAL LS +P PV G +V YING+YVLNP E + SLD+ V+GT D Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIVAGTSD 247 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEE 242 +LM+E N LSED ++ A+ G K + + + + K K+ I+ S LEE Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289 + +++ +DL ++ I K R I L+KK+ S + E + W+E Sbjct: 308 RIKEIMGDDLYLALHISGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367 Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320 EI F++ +K +++++ +KVR DGR Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427 Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-GTQRNDFMMHYN 379 VR IS LL R HGS++F RG+TQA+V V LG Q +D ++ + F + Y Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487 Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439 F GEV R+G SRREIGHGRL R++ P+ P ++FPYT+R+ S ITES+GSSSMA Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFP--SKFPYTVRVESTITESNGSSSMA 545 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493 +VCG+ LAL DAGVP+ P+AG+AMGL+ D ++ +IL+DI G ED G MD KV Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605 Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553 AG+ GITA QMD+K+ GI+ +I+ AL +AK R HIL EM+ +L + + Sbjct: 606 AGSKDGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665 Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612 + + I +++ V+G GGK +R I++ +G + V++ DG+++I +++ A E IRS Sbjct: 666 DFVKIGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725 Query: 613 ITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 IT P V +Y+ VK + FG F+ R+GL HIS+L+T R+++ + V G+ + Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785 Query: 672 VKLLD 676 VK+++ Sbjct: 786 VKVIE 790 >gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514] gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514] Length = 664 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 244/603 (40%), Positives = 378/603 (62%), Gaps = 16/603 (2%) Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160 PLF K + NE QV V+ D E+ P ++S++ ASA+LM+S +P+ GP+ ++ +NG+ Sbjct: 1 PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60 Query: 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219 ++ P E + LDL G ++ ++M E ++SE+ A+ FG + CKP+I A Sbjct: 61 FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120 Query: 220 KLAKMCAKEPIVIDSKDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID----DLKKK 274 +LA K+ + ++ +E + + + + P K R ++ ++ KK Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 +V F +E + + S + IQ + VR +++ + RMDGR + +R I ++ G+L R Sbjct: 181 LVEKFGAEKVTEFVLKDASYY--IQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPR 238 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGA 393 HGS+LF RG+TQ + + TLGT ED Q DS +G + F++HYNF + GE R+ Sbjct: 239 AHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISG 298 Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453 P RREIGHG LA R+I P++P ++PY +R+ SEI ES+GS+SMA+VCG +LALMDAGV Sbjct: 299 PGRREIGHGALAERSIEPMIPLD-KYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGV 357 Query: 454 PISKPVAGIAMGLVKDGDD------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 P+ +PVAGI++G+ + D + +LSDI G ED G MD K+AGT+ GIT Q+D+ Sbjct: 358 PMIRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDL 417 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI ++M L++A+ RL IL EM+K L+ R ++ ++ PR+E + I P++I +I Sbjct: 418 KLRGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALI 477 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 G GGK I+ +VE++G ++NI+DDGTV I S S ++ AR+ I +T E+ KIY+G+V Sbjct: 478 GPGGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKV 537 Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 V V +FGAFV F +DGLVHIS+L+ RV +T D+VK GD +WVK L D++G++KLS Sbjct: 538 VTVKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSR 597 Query: 688 KVV 690 + Sbjct: 598 RAA 600 >gi|161833811|ref|YP_001598007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri GWSS] gi|187611304|sp|A8Z660|PNP_SULMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152206301|gb|ABS30611.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri GWSS] Length = 728 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 263/712 (36%), Positives = 426/712 (59%), Gaps = 43/712 (6%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR L +ETG +AR+++G+ + G T +LATVV + K+ F PLT++Y+E+ A GK Sbjct: 15 GRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGGK 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGGY++RE RP + EIL R++DR +RPLF Y NE Q++I+++ +D+ P ++ + Sbjct: 75 IPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF----------VSGTQ 182 AS A+ +S + F+GPV ++ IN +++NP ++E + S D + V GT Sbjct: 135 VASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKS-DFYLDLDLDLDLIVGGTN 193 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDFS 238 + +++VE E ++SE +++AI+ H + IEA I+K K K+ I+ ++ Sbjct: 194 NYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNYY 253 Query: 239 KLEEEMSQ---MIKEDLRV-----------SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 + IKE ++ SC +K R +I ++ KK+ +F +E Sbjct: 254 YKYINFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQK--RSNKIYNILKKIKFHFYNESI 311 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 N EI +F++I+ ++++ ++ + +R+DGR + +R+I +QV L HGS++F RG Sbjct: 312 VINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRG 371 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 +TQA+ VTLG+ D +D+ + F +HYNF P +TGE+ + SRREIGHG L Sbjct: 372 ETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL 431 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ ++P T YT+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+M Sbjct: 432 AQRALKNIIPTT----YTIRVVSDVLESNGSSSMATVCASTLALMDSGIIVKRPVSGISM 487 Query: 465 GLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 GL+ + + IILSD+ GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++ + Sbjct: 488 GLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTIF 547 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 +AK+G L I+ +M LS R L ++ IP I VIG GGK I+ I T Sbjct: 548 KAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVSTE 607 Query: 583 AKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 + I + G ++I + +++ A I++IT VP+V IYK +V + FG FV Sbjct: 608 TNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVKI 667 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +GL+HI ++S + K +++GD + VK L +++ KIKLS K++ Sbjct: 668 SKYLEGLLHIYEISW--LTKVESFIRKGDIISVKYLGKNNKFRKIKLSHKMI 717 >gi|284030886|ref|YP_003380817.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Kribbella flavida DSM 17836] gi|283810179|gb|ADB32018.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Kribbella flavida DSM 17836] Length = 750 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 283/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ A G+T+VL+ + KD DFFPLTV+ +ER YA Sbjct: 24 FGTRTIRFETGRLAQQAAGSAAAYLDGDTMVLSATTASKKPKDQFDFFPLTVDVEERMYA 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+E IL R+IDR +RP F +NE QV+I V+ + + V+ Sbjct: 84 AGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVSGLRNEIQVVITVLALNPDKLYDVL 143 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183 ++ AAS + ++GLPF GP+ +V I+ Q+V P E + D+ V+G + D Sbjct: 144 AINAASMSTQIAGLPFSGPIGATRVALIDKQWVAFPTHSELEDAVFDMVVAGRVTDSGDV 203 Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228 A++MVE E+ +E++V + + K ++EA S LA +K Sbjct: 204 AIMMVEAESTPGTFDAVAAGKQAPTEEIVAEGLEAAKGFIKTLVEAQSALAAKASKPTGE 263 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 PI D + E+L + I K R + + +K +V +++ Sbjct: 264 FPIFPDYA--DDAFAAVQAAATEELTQALTITGKQEREEATEAVKAAVVDKLAADFEG-R 320 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E E+ + F + K+VR +L KVRMDGR +R + AQV +L R HGS+LF RG+TQ Sbjct: 321 EKELSAAFRSLTKKLVRQRVLRDKVRMDGRGLADIRPLKAQVKVLPRVHGSALFERGETQ 380 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R +M +YNF P +TGE R+G+P RREIGHG LA R Sbjct: 381 ILGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 440 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ PVLP FPY LR VSE S+GS+SM +VC S+L+L+ AGVP+ PVAGIAMGL+ Sbjct: 441 ALVPVLPSREDFPYALRQVSEALGSNGSTSMGSVCASTLSLLSAGVPLKAPVAGIAMGLI 500 Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 DG +++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Q Sbjct: 501 SGEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAGALTQ 560 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 AK RL IL+ M+K + ++ ++ EF PRV + +P D+I VIG GK+I I E TGA Sbjct: 561 AKEARLTILDVMAKAI-DAPGEMSEFAPRVISVKVPVDKIGEVIGPKGKMINQITEDTGA 619 Query: 584 KVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++I+DDGTV I ++ AE A + +PE + Y G VVK +FGAF+ Sbjct: 620 DISIEDDGTVYIGATDGPSAEAARAAINAIANPTMPEKGERYLGTVVKTTNFGAFISLLP 679 Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HIS+L +RV D++ G + V++ + DDRGK+ L Sbjct: 680 GKDGLLHISKLRGLAGGKRVEAVEDILSVGQKLQVEIAEIDDRGKLSL 727 >gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 726 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 288/723 (39%), Positives = 419/723 (57%), Gaps = 59/723 (8%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + V++E R + G +A+Q++G+ G+TV+LATVV D + DF PLTV Y Sbjct: 3 YDVKLELENRVEEYSFGDVAKQANGSAWIKSGKTVILATVVIDETEIVKDDFLPLTVQYI 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V D ES Sbjct: 63 EKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSADSES 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 V+++ AASAAL S + V + ++G+ +LNP L + SLDL++SGT+D Sbjct: 123 DMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGTKD 182 Query: 184 AVLMVEL--------EANQLSE------------DVVLDAIIFGHNECKPVIEAISKLAK 223 +LM+E+ E E +V+D + +IE + K K Sbjct: 183 DLLMIEMRSIGSEKVEVEDTYEPMLDPMMDPSLGTIVVDTHVSNAMPEDELIEVLDKTEK 242 Query: 224 M---------CAKEPIVIDSK----DFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCK 266 + A P D K L EEM +KE D+ + K R Sbjct: 243 LLFASNVEYEVAFGPYQKDIKPLDLKLDSLNEEMVAFVKERHMKDIADAMNQMAKSERST 302 Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326 + +L+K++++ + W+E E+ + E ++ + VR+ +L++KVR DGR +R I+ Sbjct: 303 ALRNLRKRILT----NNIEWDELELKAAIEAVKKEQVRSQILNEKVRADGRKLTEIRPIT 358 Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCA 384 +L H S LF RG TQA+VV+T+G +D Q + L+ GTQ +FM+HYNF + Sbjct: 359 IDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGTQNENFMVHYNFPGFS 418 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 GE S + RRE+GHG LA+RA+ P++ Q T+R+VSEI ES+GSSSMATVCG Sbjct: 419 VGEASPVMGTKRRELGHGNLAKRALEPIIDLDGQ---TVRLVSEILESNGSSSMATVCGG 475 Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504 +AL A + S VAGIAMG+V DG+ + ILSDI G EDH G MDFKV G+ GITAMQ Sbjct: 476 YMALRAADIETSDTVAGIAMGMVSDGERYAILSDIMGLEDHDGDMDFKVTGSKEGITAMQ 535 Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQI 563 MD+K+GGIS NI+ AL QAK GR HI++ M + +ES+++ + P E I P I Sbjct: 536 MDIKLGGISLNILKEALYQAKEGRAHIIDIM--LDAESKIEFNDGVLPSTEFFHIDPGFI 593 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +IG GK IR ++E+ ++ID +G VKI + ++ A+E I+ I + P+ KI Sbjct: 594 GEIIGQAGKTIREMIEKFEVAIDIDKKEGKVKITGKNKEGVQGAKEHIQKIVNAPKKEKI 653 Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKL 674 Y+G V K++DFGAFV DGL+HIS+LS + RV DV+KEG+ V V++ Sbjct: 654 KYEVGEKYEGTVKKIVDFGAFVELPDGTDGLLHISKLSKDKRVENVHDVLKEGEKVTVEI 713 Query: 675 LDF 677 L+F Sbjct: 714 LEF 716 >gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] Length = 735 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 287/738 (38%), Positives = 422/738 (57%), Gaps = 94/738 (12%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ GA L TVVLATV + + + +DF PLTV Y E+TYA G+IPGGY++RE Sbjct: 18 KVAKQASGAALLRVKNTVVLATVAREDT-QVSEDFLPLTVQYIEKTYAAGRIPGGYVKRE 76 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P + E L SR+IDRS+RPLF K Y TQ+++ V+ D E VV++ AAS AL LS Sbjct: 77 TKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVALYLS 136 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE--ANQLSE- 197 +P PV G +V YI+ ++V+NP E + S LDL+V+G +D +LM+E+ A Q E Sbjct: 137 DIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIATQKDEM 196 Query: 198 -----DVVLDAIIFGH-------NECKP--VIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243 D ++D + G NE ++EAI++ K + + EE Sbjct: 197 MPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAILRAS--------NAYEEA 248 Query: 244 MSQMIKEDLR-----------VSCFIPEKYV--------------RCKQIDDLKKKMVSY 278 SQ KED + ++ ++ E Y R +++ + K++++ Sbjct: 249 FSQHKKEDAQLELKPEIENESIAVYLDEFYKNEVKAAINQMAKSERAGELNKIAKQILTD 308 Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 ++ W E + +V + K+VR ++++ VR DGR + VR IS + +L HGS Sbjct: 309 EVAQKEGWEEEVVSNVLAKFKKKIVREQIINEGVRADGRGLKDVRPISIETNILPNAHGS 368 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 LF RG TQA+VV TLGT D Q D L+ G + FM +YNF + GE S + AP R Sbjct: 369 CLFTRGQTQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGEASPLKAPGR 428 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 RE+GHG LA+RA+ P + + PYT+R+VSEI ES+GSSSMA+VCG SLAL AGV Sbjct: 429 RELGHGNLAKRALAPSIDSDS--PYTIRLVSEILESNGSSSMASVCGGSLALRAAGVDTP 486 Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 K VAG+AMGL+ +G+ +L+DI G EDH G MDFKVAG+ GITA+QMD+K+GGIS ++ Sbjct: 487 KLVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLDV 546 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA GRLHILN M + E P++E+ ++ P +I ++IG GK I+ Sbjct: 547 LKEALLQACEGRLHILNLMETANKNISVN-EEILPKLELFSVDPGKIVDIIGQAGKTIKE 605 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615 I+E+ +++D + G VKIA + + ++AA++ I I Sbjct: 606 IIEKFDVAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDGGKGFGGRRGGRDGKEGR 665 Query: 616 ---VPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 PE N ++G+V V++FGAF+ G DGL+HIS++ T +K GD V Sbjct: 666 AHKTPEFNIGDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP--------LKAGDRV 717 Query: 671 WVKLLDFDDRG-KIKLSM 687 VK+ + +G KI LS+ Sbjct: 718 KVKI--SEQKGHKISLSL 733 >gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] Length = 721 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 267/679 (39%), Positives = 398/679 (58%), Gaps = 25/679 (3%) Query: 34 TYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISR 93 T G++V+ AT D+ +D DF PL+V +QER + G G + +R+ RP E+EIL+ R Sbjct: 2 TRGDSVLYATASRDKDKRD-IDFLPLSVEHQERFSSAGTTSGAFNKRDGRPAEHEILVCR 60 Query: 94 MIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQ 153 +IDR +RPL ++ +++ETQ++ ++ +D + +++ A++AAL LS +P PV A Sbjct: 61 LIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALWLSDVPLLKPVAAAM 120 Query: 154 VDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECK 212 V YI+GQ VLNP +++ + S L+L V+GT++AVLM+E A+ L ED++++A+ FGH K Sbjct: 121 VGYIDGQLVLNPTVEQMKHSRLNLTVAGTKEAVLMIEGAADFLPEDLMVEAVTFGHEAIK 180 Query: 213 PVIEAISKLAKMCAKEPIVIDSKD-FSKLEEEMSQMI--KEDLRVSCFIPEKYVRCKQID 269 + +L K+ K K L+E M ++ K D + + +K Q Sbjct: 181 IQCAGLEELGKVAGKAKKYDSIKPPVEGLQEAMDELFTDKVDEIFNGDMAKKDQSAAQ-S 239 Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329 L + ++ F ++ + + + F+D+ + + R+DGR VR I ++ Sbjct: 240 QLNEAVMLEFEEKYPE-EKAAVKAAFKDLLCRRMFAKAKASGTRIDGRKLNEVRVIDSEA 298 Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389 GL R HGS+LF RG+TQ + TLG Q +D +SG + F + Y F P GE Sbjct: 299 GLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEKRFYLQYTFPPSCVGETG 358 Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449 R+GAP RRE+GHG LA RA+ P LP A FPY +R+ S +TES+GSSSMA+VCG LALM Sbjct: 359 RVGAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALM 418 Query: 450 DAGVPISKPVAGIAMGLV---KDG---DDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503 DAGVPI P+AGIAMG++ K G ++ +I+SDI G ED LG MDFKVAG GIT Sbjct: 419 DAGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTF 478 Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563 Q+D+K G++ M AL QAK GRLHIL EM K L E R +L P++ + I PD I Sbjct: 479 QLDIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKEPRAELPASVPKMIKVTISPDSI 538 Query: 564 RNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNK 621 VIG GG+ IR ++E +++D+ G ++I + ++E A+EMI + + PE K Sbjct: 539 GKVIGPGGRQIRALIEDFKLDNIDVDESGEIQILGFDMEQMEKAKEMIPTYVGPEPEEGK 598 Query: 622 IYKGQVVKVMDFGAFVHFC-GARD-------GLVHISQLSTERVAKTSDVVK--EGDTVW 671 IY G++ + +FG FV GA D GL H+S+L ERV T ++ +T+ Sbjct: 599 IYTGKITGIHNFGVFVEILPGAEDGSTPGLEGLCHVSELHIERVRNTEGFIRAMNTETLE 658 Query: 672 VKLLDFDDRGKIKLSMKVV 690 V + +G+ +LS K V Sbjct: 659 VVYQGKNKKGQHQLSRKAV 677 >gi|75349253|sp|Q53597|PNP_STRAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|642066|gb|AAB17498.1| guanosine pentaphosphate synthetase [Streptomyces antibioticus] Length = 740 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 276/706 (39%), Positives = 407/706 (57%), Gaps = 33/706 (4%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ G+ +A + T+VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 17 FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ +M + + VV Sbjct: 77 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AASA+ L+GLPF GP G +V I GQ+V P E + D+ V+G +D Sbjct: 137 AINAASASTQLAGLPFSGPYGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKMCAKE------P 229 A++MVE EA + + +V D + G + KP I+ + K A + Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256 Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289 + S E +S ++ +L + I K R ++D +K E E Sbjct: 257 FPVPSSTTRTTSEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-REK 315 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI + + + ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ + Sbjct: 316 EISAAYRPWPSSSSAERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL 375 Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 V TL EQ +D+LS R +M +YNF P + GE R+G+P RREIGHG LA RAI Sbjct: 376 GVTTLNMLRMEQQLDTLSPVTRKPYMHNYNFPPISVGETGRVGSPKRREIGHGALAERAI 435 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK- 468 PVLP +FPY +R VSE S+GS+SM +VC S+++L++AGVP+ PVAGIAMGL+ Sbjct: 436 VPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQ 495 Query: 469 --DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 +G+ ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL+QA+ Sbjct: 496 EINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQAR 555 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 RLHIL+ M + + ++ ++ PR+ + IP D+I VIG ++I I E TGA++ Sbjct: 556 DARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEI 614 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 I+DDGT+ I ++ EAAR I I + PEV + G VVK FGAFV + Sbjct: 615 TIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGK 674 Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 675 DGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720 >gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 830 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 278/710 (39%), Positives = 418/710 (58%), Gaps = 38/710 (5%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 P+ +ETG+I RQ+ GAV T G++V+ AT +D+ K+ DF PL+V+YQER + G Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 GGY +R+ RP E+EIL R+IDR +RPL +++ETQ++ V+ +D E S ++++A+ Sbjct: 149 GGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIAS 208 Query: 135 SAALMLSGLPFEGPVVGAQVDYIN-GQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192 +++L +S +P PV QV + G V+NP L + L+L V+GT++AVLM+E A Sbjct: 209 ASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAA 268 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-----KLEEEMSQM 247 + L E ++ A+ GH + + + ++ L K+ KE + K +++E S Sbjct: 269 DFLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDR 328 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDIQAKVVR 304 I +D+ S K + K + DL +V ++ GE V++ F+D+ + + Sbjct: 329 I-DDMWSSGL--GKEAQGKIMTDLYTAVVGELIEDYP----GETVAIKGAFKDLLCRRMF 381 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ +R DGR +R ++ + GLL R HGS+LF RG+TQ + TLG Q ++ Sbjct: 382 FRAREEGLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIE 441 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L GT F + Y F P GE R+GAP RRE+GHG LA RA+ P +P A FPYT+R Sbjct: 442 KLDGTDEKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIR 501 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---KDG---DDFIILSD 478 + S ITES GSSSMA+VCG SLALMDAGVPI PVAGIAMG++ K G ++ +ILSD Sbjct: 502 VESLITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSD 561 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFKVAG GI+ Q+D+K G++ M AL+QA+ GRLH+L+EM KV Sbjct: 562 ILGTEDALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKV 621 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA 596 ++ R +L P++ +IP + I +IG GGK IR I+E VN+D ++G V+++ Sbjct: 622 IASPREELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDF-ELVNMDVGEEGGVQLS 680 Query: 597 SSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFC-GARD-------GLV 647 S A++ A+ I ++ P + Y G++ + FG F+ GA D GLV Sbjct: 681 SFDTAKMGEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLV 740 Query: 648 HISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQNTG 695 H+S+L+ ERV +K + + VK L D+GK++LS K + + G Sbjct: 741 HVSELAHERVRNCEGFMKSMNVEELTVKYLG-KDKGKLQLSRKALLEEQG 789 >gi|239917238|ref|YP_002956796.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Micrococcus luteus NCTC 2665] gi|281414287|ref|ZP_06246029.1| polynucleotide phosphorylase/polyadenylase [Micrococcus luteus NCTC 2665] gi|259534137|sp|C5C9U0|PNP_MICLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239838445|gb|ACS30242.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Micrococcus luteus NCTC 2665] Length = 753 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 279/714 (39%), Positives = 412/714 (57%), Gaps = 39/714 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GA + E T +L+ +S ++G DFFPLTV+ +ER YA Sbjct: 18 YGKRTVRFETGRLAQQAAGAAMVYLDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + IL R+IDR +RP F K +NE QV++ V + V Sbjct: 78 SGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181 ++ AAS + LSGLPF GP+ G ++ ++ Q+V P+ + +G+ ++ V+G Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGARQWVAFPKHSQLKGAVFNMAVAGRVV 197 Query: 182 --QDAVLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCA 226 A++MVE EA S +V + + G KP I EA + L K Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257 Query: 227 KEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS 284 K+P+ + +D+ + + D F I +K R +++ + E Sbjct: 258 KDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIADKQERESASYAYLLEVLEELAGEGK 317 Query: 285 SWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 + E GEI + + ++VR +L +VR+DGR +R ++A+V +L R HGS++F Sbjct: 318 DFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFE 377 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQ + V TL + EQ +DSLS +M HYNF P +TGE R+G+P RREIGHG Sbjct: 378 RGETQIMGVTTLNMLKMEQQIDSLSPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 437 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ VAGI Sbjct: 438 ALAERALVPVLPAREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAHVAGI 497 Query: 463 AMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 AMGLV DG + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ Sbjct: 498 AMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLA 557 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 AL QA+ RLHIL+ ++ + ++ ++ PR+ + IP D+I VIG G +I I Sbjct: 558 SALTQAREARLHILSVLNAAI-DAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQ 616 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636 + TGA + I+DDGTV I ++ A EAAR + +I + VPEV + Y G VVK+ FGAF Sbjct: 617 DDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAF 676 Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 V +DGL+H+S+L +RV DV+ G V V++ DDRGK+ LS Sbjct: 677 VSLTPGKDGLLHVSELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLS 730 >gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] Length = 554 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/454 (51%), Positives = 320/454 (70%), Gaps = 5/454 (1%) Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFEDIQAKVVR 304 KED ++ K R ++++L+ K++S + ++S+ + + +IV+ + + +VR Sbjct: 9 KEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVTALKTFERSLVR 68 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 + ++D R+DGR + +RDI +V +L + HGS+LF RG+TQA+VV LGT +DEQ VD Sbjct: 69 SKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVD 128 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI VLP+ + FPYT+R Sbjct: 129 DLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIR 188 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSEITESDGSSSMATVCG+SLALMD GVPI PVAGIAMGL+K+ D FIILSDI GDED Sbjct: 189 VVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDED 248 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT G+TA+QMDMKI GI +I+ AL QAK GR+HIL++M+ V+ ESR Sbjct: 249 HLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAVIQESRN 308 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 ++ PR+E + I D+IRNVIG GGK IR I E+TGAK+ I DGTV I + + +E Sbjct: 309 RIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTVMIYAVNNEAVE 368 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+ MI I PE+ K+++G VV++M FGAFV F G + GLVHIS++ E ++ V+ Sbjct: 369 YAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIRNEHISSVGSVI 428 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 D V V ++ DR I+LSM+ VDQ +G+PI Sbjct: 429 SLNDKVKVLVIGI-DREHIQLSMRRVDQESGEPI 461 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 25/182 (13%) Query: 26 QSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76 ++ G+ L T G T L + D D ++ F L N+ YAVG+ Sbjct: 98 KAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRENFLLHYNFP--PYAVGE--SA 153 Query: 77 YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPHVVSMVAA 134 LR P EI ++ R+IR + + K++ I V+ ES S + ++ A Sbjct: 154 ALRA---PGRREIGHGKLAWRAIRYVLPE--KSDFPYTIRVVSEITESDGSSSMATVCGA 208 Query: 135 SAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GSLDLFVSGTQDAVLMVE 189 S ALM +G+P + PV G + I + ++++ + DED G +D V+GT + V ++ Sbjct: 209 SLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDEDHLGDMDFKVAGTAEGVTALQ 268 Query: 190 LE 191 ++ Sbjct: 269 MD 270 >gi|269956017|ref|YP_003325806.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Xylanimonas cellulosilytica DSM 15894] gi|269304698|gb|ACZ30248.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Xylanimonas cellulosilytica DSM 15894] Length = 744 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 270/707 (38%), Positives = 413/707 (58%), Gaps = 36/707 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+V A GET++L+ + KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLARQAAGSVAAYLDGETMLLSATTAGKHPKDQFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R+IDR +RPLF K +NE QV++ V+ + + V+ Sbjct: 78 AGRIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLAIHPDDAYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184 ++ AAS + +SGLPF GPV G ++ I+GQ+V P+ D+++ ++ V+G A Sbjct: 138 AINAASLSTQISGLPFSGPVAGVRIALIDGQWVAFPKYSDKERAVFEMVVAGRVAGDDVA 197 Query: 185 VLMVELEANQLSEDVVLDAI--------IFGHNECKPVIEAISKLA--------KMCAKE 228 + M+E EA + ++ + + G KP + A+ + K + Sbjct: 198 IAMIEAEATDDAWKLIQEGVQAPTEAVVAEGIEAAKPFLRALCEAQSALAAQAAKDVQEF 257 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ D + E + + I +K R ++D++K ++++ ++ E Sbjct: 258 PLFPDYQ--PDAFEAVEAAASARAAEALAIADKQTREGRLDEIKAELLAELGAQFEG-RE 314 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + F +Q K++R +L +++R+DGR +R + A+V +L R HGS++F RG+TQ Sbjct: 315 KEVSAAFRSVQKKLMRHRVLTEQIRIDGRGPRDIRTLGAEVEVLPRVHGSAIFERGETQI 374 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +DSL R +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 375 MGVTTLNMLRMEQQIDSLGPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L++++AGVP+ PVAGIAMGL+ Sbjct: 435 LVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAPVAGIAMGLIS 494 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D D ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI +++ AL QA Sbjct: 495 DEVDGETRYVALTDILGAEDALGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQA 554 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 R+ IL+ +++ + ++ PRV + +P D+I VIG GK+I I E+TGA Sbjct: 555 HEARVTILDVLNEAIDVPD-EMSPNAPRVISVKVPVDKIGEVIGPKGKMINQIQEETGAD 613 Query: 585 VNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 ++I+DDGTV I ++ AE A + VPEV + + G VVK FGAF+ Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKTTSFGAFISLSPG 673 Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 674 KDGLLHISQIRKLVGGKRVENVDDVLSVGQKVQVEIGEIDPRGKLSL 720 >gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus 13826] gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter concisus 13826] Length = 732 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 273/700 (39%), Positives = 402/700 (57%), Gaps = 70/700 (10%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 + ++A+Q+ GAVL TVVLATV + ++ +DF PLTV Y E+ YA GKIPGGY Sbjct: 14 FDLNKVAKQASGAVLLRVKNTVVLATVARE-DVQVEEDFLPLTVQYIEKAYAAGKIPGGY 72 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 ++RE++P + E L +R+IDRS+RPLF K Y TQ+++ V+ D E VVS+ AAS A Sbjct: 73 VKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVSLNAASVA 132 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA---- 192 L LS +P PV G +V YI+ ++V+NP E Q ++DL+V+GT+D +LM+E+ + Sbjct: 133 LYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGTKDELLMIEMRSLPQQ 192 Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 N+ SED +++AI F A + K Sbjct: 193 TTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAGKAILRASSAYEEAFKE 252 Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 KE ++ K ++E E + + K +++ + K R ++ + K++ S Sbjct: 253 HKKEDAALELK--PEIENENIAIYIDKFYKAEVKNAINQMAKSERASELGKIAKQISSDE 310 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W+E I +V + K+VR ++++ +R DGR E VR IS + +L HGS Sbjct: 311 VAQKEGWDEAVITNVLGKYKKKIVREQIINEGIRADGRGLEEVRPISIETNVLPNAHGSC 370 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 LF RG TQA+VV TLGT D Q D L+ FM +YNF + GE S + AP RR Sbjct: 371 LFTRGQTQALVVATLGTDSDAQMYDILTEKAPLVEKFMFNYNFPGFSVGEASPLKAPGRR 430 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 E+GHG LA+RA+ P + + PYT+R+VSEI ES+GSSSMA+VCG SLAL AGV K Sbjct: 431 ELGHGNLAKRALAPSIDLAS--PYTIRVVSEILESNGSSSMASVCGGSLALRAAGVNTQK 488 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 VAG+AMGL+ +G+ +L+DI G EDH G MDFKVAGT GITA+QMD+K+GGIS ++ Sbjct: 489 LVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGTSDGITALQMDIKLGGISLEVL 548 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 AL QAKRGR HIL M++ ++ +++ E P++E+ + P +I ++IG GK I+ Sbjct: 549 KEALYQAKRGREHILALMTQ--ADKNIEINEDVLPKLELFNVDPSKIVDIIGQAGKTIKE 606 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------V 616 I+E+ +++D + G VKIA + ++AA++ I SIT Sbjct: 607 IIEKFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRSFGKKPFKHDKDRVK 666 Query: 617 PEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 P N + G V V+DFG F+ DGL+HIS++ + Sbjct: 667 PTFNIGDEFTGSVKSVVDFGVFIELKDGVDGLLHISKIKS 706 >gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 525 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/506 (45%), Positives = 340/506 (67%), Gaps = 2/506 (0%) Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245 MVE A+Q+ E+ +L+AI+FGH+E K +I ++ + KE + + + L + + Sbjct: 1 MVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVR 60 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVR 304 +M ++D+ + + EK+ R I+++KK+++ ++ +E + + G++ + I + VR Sbjct: 61 EMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 120 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ +K+R DGR + +R ++++VG+L RTHGS LF RG TQA + TLG D Q +D Sbjct: 121 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILD 180 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L + FM HYNF + GE M P RREIGHG L RA+ PV+P FPYT+R Sbjct: 181 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 240 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 +VSE+ ES+GS+S A++CGS+LA+MDAGVP+ PVAGIAMGLVK G+ + ILSDI G ED Sbjct: 241 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMED 300 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 HLG MDFKVAGT G+TA+QMD+KI G+S I+ ALQQAK GR+HILN M V++E R Sbjct: 301 HLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRT 360 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 +L + P++ IM I PD+IR+VIG GK I I+E+TG K++I+ DGTV I+S + + Sbjct: 361 ELSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMND 420 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A+++I I +V +IY+G+V +V FGAFV +DGLVHIS+L+ ERV K DVV Sbjct: 421 KAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVV 480 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 K GD + VK+++ D +G++ LS KV+ Sbjct: 481 KIGDVITVKVIEIDKQGRVNLSRKVL 506 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 16/203 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 RPL E G ++R + G+ L T G+T + +L D Q L V +R Sbjct: 139 RPLASEVGILSR-THGSGLFTRGQTQAXSICTLG-ALGDVQILDGLGVEESKRFMHHYNF 196 Query: 74 PG---GYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHV 128 P G R P EI + +R++ P+ K + +++ V++ + +S Sbjct: 197 PSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGSTSQ-- 254 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY--VLN--PRLDEDQGSLDLFVSGTQD 183 S+ ++ A+M +G+P + PV G + + +G++ +L+ +++ G +D V+GT Sbjct: 255 ASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDHLGDMDFKVAGTAQ 314 Query: 184 AV--LMVELEANQLSEDVVLDAI 204 V L ++++ + LS +++ +A+ Sbjct: 315 GVTALQMDIKIDGLSREILEEAL 337 >gi|145295879|ref|YP_001138700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glutamicum R] gi|187610291|sp|A4QEY2|PNP_CORGB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|140845799|dbj|BAF54798.1| hypothetical protein [Corynebacterium glutamicum R] Length = 753 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 290/728 (39%), Positives = 428/728 (58%), Gaps = 58/728 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DGAV TY +T++LAT ++G DFFPLTV+ +ER Sbjct: 25 DFGTRTIRFETGQLARQADGAV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 83 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE Q+++ VM + E Sbjct: 84 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYD 143 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG 180 VV++ ASAA +SGLP G V G ++ + GQ+V P +Q ++ V+G Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAG 203 Query: 181 ------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI- 215 + AV+MVE A++ +E +V D G KP I Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSD----GLEAAKPFID 259 Query: 216 ------EAISKLAKMCAKE-PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266 E +++ AKE P+ D +S +E ++S+ + L + Sbjct: 260 ILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKKLASLLTLKAKQERDDATNA 319 Query: 267 QIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 +++++ +++ F + +SS E EI + + + +VR ++L R+DGR +RD Sbjct: 320 YMEEIEAELLPKFEASYSSAAEASKEIRAAYNAVMKSIVRRMILTDHFRIDGRGVTDIRD 379 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ +V L+ R HGSSLF RG+TQ + V TL + EQ +DSL+ +M HYNF P + Sbjct: 380 LAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYS 439 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 TGE R+G+P RREIGHG LA RA+ PV+P +FPY++R VSE S+GS+SM +VC S Sbjct: 440 TGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYSIRQVSEALGSNGSTSMGSVCAS 499 Query: 445 SLALMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGI 500 +L+L +AGVP+ PVAGIAMGLV DG +++ L+DI G ED G MDFKVAGT I Sbjct: 500 TLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFI 559 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+Q+D K+ GI ++ AL+QA+ RL ILN M+ V++ ++ +F PR+ + IP Sbjct: 560 TALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGPD-EMSKFAPRITTVKIPV 618 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618 +I +IG GK I + E+TGA ++I+DDGTV I+++ A EAA E I ++ + +P+ Sbjct: 619 AKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPK 678 Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677 V + + G VVK FGAFV RDGLVHIS+L +RV K DVVK G+ + V++ D Sbjct: 679 VGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADI 738 Query: 678 DDRGKIKL 685 D+RGKI L Sbjct: 739 DNRGKISL 746 >gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri JV22] gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri JV22] Length = 725 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 278/726 (38%), Positives = 426/726 (58%), Gaps = 56/726 (7%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E G+ E ++A+QS+GAVLA G VVLATVV + +DF PLTV Y E+T Sbjct: 6 EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y T + + V+ D Sbjct: 66 YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +S+ AA+AAL S LP + V G +V I V+NP ++ + +LDL+V+G++D +L Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKDELL 185 Query: 187 MVELEA--------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226 M+E++ N++ ED +++AI F N K K + + Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245 Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 KE + ++ F+ +EE + +++ D++ + K R Q+ D+ K M+S +E Sbjct: 246 KEKVEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAK-MIS--KNE 301 Query: 283 HSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + NE E +++E + + ++VR ++++++VR DGR + VR IS + +L TH S Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 LF RG+TQA+V+ T+ +D Q + L+ T +FM+HYNF + GE M RR Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 E+GHG LA++A+ + + + T+R+VSEI ES+GSSSMATVCG SLAL AG+PIS Sbjct: 422 ELGHGNLAKKALEATIDK--DYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT GITA+QMD+K+GGI +++ Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QAK GR HIL+ M +E + P +E AI P +I VIG G I+ I Sbjct: 540 KEALLQAKEGRTHILSLMKD--AEKDIVPSNALPLIEQFAIDPSKIMVVIGKAGATIKEI 597 Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-DVP---------EVNKIYK-- 624 +E+ +++D ++GTVK++ + I A E I++I+ + P + K+Y Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657 Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 G+V ++ DFGAF+ +GL+HIS++S +RV +DV+ G + VK+L + Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716 Query: 681 GKIKLS 686 +I+LS Sbjct: 717 DRIELS 722 >gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 958 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 272/706 (38%), Positives = 418/706 (59%), Gaps = 26/706 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQER 66 E E + + LETG IAR ++GAV+ + +T VL+TV + D +DF PLTV+YQE+ Sbjct: 58 EFEIGSQVISLETGEIARFANGAVVLSMDQTKVLSTVTSSKG--DAVRDFLPLTVDYQEK 115 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +A G IP ++RRE P E E+L R+IDR IRPLF+ + +E QV+ +V+ D + P Sbjct: 116 QFAQGVIPNTFMRREGAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMASVLSSDGKQDP 175 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V++ A SAALMLS +P+ GP+ ++ I GQ+++NP +DE L+L + T+D Sbjct: 176 DVMAANATSAALMLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSDLNLVYACTKDKT 235 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEE 243 LM++++A ++SE + A+ H E +E +LA K D KD+ S + E Sbjct: 236 LMIDVQAREISEKDLEAALRLAHPEAVKYLEPQIRLAAKAGK-----DKKDYKLSMVSER 290 Query: 244 MSQMIKE--DLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + + ++ + ++ + K+ R + +D++ + + E + + + Sbjct: 291 ILEKVRNLAETQIEAVFTDSSYGKFERGEALDNITQDVKRTLEEECDEESLNVLRKAVDT 350 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +VVR ++ + R+DGR + VR + + G L HGSSLF RGDTQ + VTLG Sbjct: 351 VRKQVVRRRIISEGFRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAP 410 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q ++SL G FM+HY+F P + EV + +RRE+GHG LA +A+ VLP Sbjct: 411 GDAQRLESLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPED 470 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471 FPYT+RI SE+ SDGS+SMATVCG S+ALMDAG+P+ + VAG+++GLV + D Sbjct: 471 DFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPSTGEI 530 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D+ +L+DI G EDHLG MDFK+AGT +G+TA+Q+D+K GI +I+ L A +GRL Sbjct: 531 KDYRVLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICECLDHALKGRLQ 590 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+ M + ++ R Q+ + PR+ D +R +IG G + R I E+TGA+++I D Sbjct: 591 ILDHMEQEINVPRTQVDKTRPRLATFKFSNDTLRQLIGPLGVLKRKIEEETGARLSI-SD 649 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 G + + + + A ++ +E I I E +YKG V + ++GAF+ F G + GL+HI Sbjct: 650 GMLTVGAKNQAVMDKVQEKIDFIIGCEIETGGVYKGIVTSIKEYGAFIQFNGGQQGLLHI 709 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 S+LS E V+K SDVV G + + + D RG IKLS+K G Sbjct: 710 SELSHEPVSKVSDVVSVGQQLSLMCIGQDVRGNIKLSLKATSPPLG 755 >gi|293977923|ref|YP_003543353.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri DMIN] gi|292667854|gb|ADE35489.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Candidatus Sulcia muelleri DMIN] Length = 730 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/713 (36%), Positives = 429/713 (60%), Gaps = 43/713 (6%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR L +ETG +AR+++G+ + G T +LATVV + K+ F PLT++Y+E+ A GK Sbjct: 15 GRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGGK 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGGY++RE RP + EIL R++DR +RPLF Y NE Q++I+++ +D+ P ++ + Sbjct: 75 IPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-----------DLFVSGT 181 AS A+ +S + F+GPV ++ IN +++NP ++E + S DL V GT Sbjct: 135 VASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSYLDLDLDLDLDLDLIVGGT 194 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDF 237 + +++VE E ++SE +++AI+ H + IEA I+K K K+ I+ ++ Sbjct: 195 NNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNY 254 Query: 238 S-----------KLEEEMSQMIKEDLRV---SCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283 ++E++ + E++ SC +K R +I ++ KK+ +F +E Sbjct: 255 YYKYINFNLNVFYIKEKIKFLSYEEIDYIYKSCLFKQK--RSNKIYNILKKIKFHFYNES 312 Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 N EI +F++I+ ++++ ++ + +R+DGR + +R+I ++V L HGS++F R Sbjct: 313 IVINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNIWSKVDCLPGVHGSAIFTR 372 Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G+TQA+ VTLG+ D +D+ + F +HYNF P +TGE+ + SRREIGHG Sbjct: 373 GETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGN 432 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA+RA+ ++P T+ T+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+ Sbjct: 433 LAQRALKNIIPTTS----TIRVVSDVLESNGSSSMATVCASTLALMDSGILVKRPVSGIS 488 Query: 464 MGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 MGL+ + + IILSDI GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++ + Sbjct: 489 MGLIMNYLTGEAIILSDILGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTI 548 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +AK+G L I+ +M LS R L ++ IP I VIG GGK I+ I T Sbjct: 549 FKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVST 608 Query: 582 GAKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638 + I + G ++I + +++ A I++IT VP+V IYK +V + FG FV Sbjct: 609 ETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVK 668 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690 +GL+HI ++S + K +++GD + VK L +++ KIKLS K++ Sbjct: 669 ISKYLEGLLHIYEISW--LTKVESFLRKGDIISVKYLGKNNKFRKIKLSHKMI 719 >gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis MIT 98-5491] gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] Length = 715 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 280/717 (39%), Positives = 419/717 (58%), Gaps = 74/717 (10%) Query: 21 GRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80 + A+Q G+V G VVLAT+ D +DF PLTV Y E+ YA GK PGGY++R Sbjct: 18 NKFAKQCSGSVYLQSGNNVVLATIAIDTQEVVEEDFLPLTVQYIEKAYAAGKFPGGYIKR 77 Query: 81 ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140 E++P + E L +R+IDRS+RPLF K Y TQ+ + V+ D ++ ++++ AASAAL + Sbjct: 78 EAKPGDFETLSARIIDRSLRPLFPKDYCYPTQITLMVLSADEDADLQLLALNAASAALYV 137 Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE-------- 191 S +P PV ++ I G++V+NP L ++ +LDLFVSG ++ +LM+E+ Sbjct: 138 SEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVSGVKEDLLMIEMRSFGGVAIH 197 Query: 192 -------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 AN+LSE+ +++ + +A + K C K P+V+++K + + E+ Sbjct: 198 QENTEFSANELSEEEMIEVLEIAKKAISQRSQAFEESFKDCVKTPLVLENKRKNFVSSEI 257 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------WNEG--- 289 + IKE +++LK + S +E +S W E Sbjct: 258 VEYIKES---------------HLEELKDIIQSLSKTERNSLLHAFARKIQKEWEEKNLK 302 Query: 290 EIVS----VFED---IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 EI S V E I+ +++RT++L++ R DGR+ + VR IS + L H S+LF Sbjct: 303 EIESLEKCVLESVLKIKREIIRTMILEESKRADGRELKEVRPISIETNFLPNAHSSALFT 362 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 RG TQA+VV TLG D Q + L+ + FM+HYNF P + GE S + AP RRE+G Sbjct: 363 RGQTQALVVATLGGEMDAQSYELLTDKAPLKERFMVHYNFPPFSVGEASSISAPGRRELG 422 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA+RA+ + T+R+VSEI ES+GSSSMATVCG SLAL AG+ + +A Sbjct: 423 HGNLAKRALEASVINGDL--KTIRLVSEILESNGSSSMATVCGGSLALAAAGIKCTSLIA 480 Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 G+AMGLV + D + IL+DI G EDH G MDFK+AG+ GITAMQMD+K+GG+ I+ A Sbjct: 481 GVAMGLVCENDKYAILTDIMGLEDHDGDMDFKIAGSRRGITAMQMDIKLGGLKSEILQKA 540 Query: 521 LQQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 L QAK R HIL+ M + VL+ES L P +I +I P +I +VIG G+ I+ Sbjct: 541 LMQAKEARNHILDLMEEAKEKIVLNESVL------PSSQIFSIEPSKIIDVIGQAGRTIK 594 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE----VNKIYKGQVVKV 630 I+E+ V+++ ++G VK++ S+ ++EAA+ I I P+ + IY+G+V K+ Sbjct: 595 EIIEKFSVAVDLNRENGEVKVSGSNKEKVEAAKMHILKIIKNPQELYKIGDIYQGKVKKI 654 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 ++FGAFV DGL+HIS+++ R K SDV+KEGD V V++L + K++L + Sbjct: 655 VEFGAFVELPKGYDGLLHISKITNNREQKVSDVLKEGDNVEVEVLSL-SKNKVELKL 710 >gi|297571213|ref|YP_003696987.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Arcanobacterium haemolyticum DSM 20595] gi|296931560|gb|ADH92368.1| guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Arcanobacterium haemolyticum DSM 20595] Length = 809 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 277/704 (39%), Positives = 403/704 (57%), Gaps = 36/704 (5%) Query: 14 RPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 R ++ ETG +ARQ+ G LA GET VL+ K+ DFFPLTV+ +ER+YA G+ Sbjct: 37 RTIRFETGLLARQAAGCALAYLDGETTVLSATAVSSQPKEHFDFFPLTVDVEERSYAAGR 96 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPG + RRE RP + IL +R+IDR +RP F K +NE QV+ V+ + + VV++ Sbjct: 97 IPGSFFRREGRPGTDAILAARLIDRPLRPAFVKGLRNEVQVVATVLTIHPDDAYDVVAIN 156 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDAVLM 187 AAS + LSGLPF GP+ G ++ I+GQ+V PR E + + + V+G A++M Sbjct: 157 AASMSTQLSGLPFSGPIGGVRISLIDGQWVAFPRWSEMPRATFTMVVAGRIVGDDVAIMM 216 Query: 188 VELEANQ------------LSEDVVLDAI----IFGHNECKPVIEAISKLAKMCAKEPIV 231 VE E + +E+VV + F C+ E ++ AK + P+ Sbjct: 217 VEAEGGENAVENIAKGGVKPTEEVVAQGLEAAKTFIRTLCEAQQELAAQAAKPTEEYPLF 276 Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291 +D + + I I +K+ R +++L +V E + Sbjct: 277 PSYEDAEY--DAVGGKIGSRFEELWGITDKHERDDALNELTTDIVESLGEEFPEREQALA 334 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 ++V + K +R +L RMDGR +R I+A+ +L R HGS+LF RG+TQ + V Sbjct: 335 LAVNAHWK-KAMRERVLTTGERMDGRTPVEIRTITAESDILPRVHGSALFQRGETQIMGV 393 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TL + EQ +D+LS ++ HYNF P +TGE R+G+P RREIGHG LA RA+ P Sbjct: 394 TTLNMLKMEQQLDNLSPVTAKRYIHHYNFPPYSTGETGRVGSPKRREIGHGMLAERALVP 453 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--- 468 VLP +FPY +R VSE S+GS+SM +VC S+++LM+AGVP+ VAGIAMGLV Sbjct: 454 VLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTISLMNAGVPLKAVVAGIAMGLVSGEI 513 Query: 469 DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 DG+ ++ L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI ++ AL QA Sbjct: 514 DGEQRYVALTDILGAEDALGDMDFKVAGTRDFVTALQLDTKLDGIPAEVLAAALGQAHDA 573 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R IL+ + + + E + E PR+ + IP D+I VIG GK+I I + TGA++ I Sbjct: 574 RQAILDLIEEAVPEPD-DMAETAPRIISVKIPVDKIGEVIGPKGKMINQIQDDTGAEITI 632 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 ++DGTV I +++ + EAAR+ I I + +PEV + + G VVK FGAF+ +DG Sbjct: 633 EEDGTVFIGATNGSSAEAARQTINQIANPTMPEVGERFVGTVVKTTTFGAFISLAPGKDG 692 Query: 646 LVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 L+HISQ+ +RV DV+ GD V V+L + D RGK+ L Sbjct: 693 LLHISQIRRLVGGKRVENVEDVLNVGDKVEVELAEIDQRGKLSL 736 >gi|304390809|ref|ZP_07372761.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325692|gb|EFL92938.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 830 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 280/723 (38%), Positives = 421/723 (58%), Gaps = 42/723 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +A+Q+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 55 KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ V+ + + V Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 V++ A+S A L+GLPF GP+ GA++ I+GQ+V P E +Q + ++ ++G Sbjct: 175 VAINASSMATQLAGLPFSGPIGGARLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234 Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222 +D A++MVE + + D++ D + + KP I+ + + Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294 Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 K + P+ D +D E M ++ DL + I +K R + +++ + + E Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352 Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 + E E+ + F+ ++ K+VR +L + R+DGR + +R +SA+V +L R HGS+L Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIG Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPATHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+A Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532 Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL+ ++G F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ M + + +L PR+ + IP D+I VIG GK+I Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK FG Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AF+ +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L V Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHAVVD 771 Query: 691 DQN 693 D++ Sbjct: 772 DED 774 >gi|19553179|ref|NP_601181.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glutamicum ATCC 13032] gi|62390815|ref|YP_226217.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium glutamicum ATCC 13032] gi|81760356|sp|Q8NP50|PNP_CORGL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21324745|dbj|BAB99368.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Corynebacterium glutamicum ATCC 13032] gi|41326153|emb|CAF20316.1| PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE PENTAPHOSPHATESYNTHETASE [Corynebacterium glutamicum ATCC 13032] Length = 753 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 292/736 (39%), Positives = 433/736 (58%), Gaps = 59/736 (8%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DGAV TY +T++LAT ++G DFFPLTV+ +ER Sbjct: 25 DFGTRTIRFETGQLARQADGAV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 83 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+ IL R+IDR +RP F K +NE Q+++ VM + E Sbjct: 84 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYD 143 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG 180 VV++ ASAA +SGLP G V G ++ + GQ+V P +Q ++ V+G Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAG 203 Query: 181 ------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI- 215 + AV+MVE A++ +E +V D G KP I Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSD----GLEAAKPFID 259 Query: 216 ------EAISKLAKMCAKE-PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266 E +++ AKE P+ D +S +E ++S+ + L + Sbjct: 260 ILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKKLASLLTLKAKQERDDATNA 319 Query: 267 QIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 +++++ +++ F + +SS E EI + + + +VR ++L R+DGR +RD Sbjct: 320 YMEEIEAELLPKFEASYSSAAEASKEIRAGYNAVMKAIVRRMILTDHFRIDGRGVTDIRD 379 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ +V L+ R HGSSLF RG+TQ + V TL + EQ +DSL+ +M HYNF P + Sbjct: 380 LAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYS 439 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 TGE R+G+P RREIGHG LA RA+ PV+P +FPY +R VSE S+GS+SM +VC S Sbjct: 440 TGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 499 Query: 445 SLALMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGI 500 +L+L +AGVP+ PVAGIAMGLV DG +++ L+DI G ED G MDFKVAGT I Sbjct: 500 TLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFI 559 Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560 TA+Q+D K+ GI ++ AL+QA+ RL ILN M+ V++ ++ +F PR+ + IP Sbjct: 560 TALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGPD-EMSKFAPRITTVKIPV 618 Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618 +I +IG GK I + E+TGA ++I+DDGTV I+++ A EAA E I ++ + +P+ Sbjct: 619 AKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPK 678 Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677 V + + G VVK FGAFV RDGLVHIS+L +RV K DVVK G+ + V++ D Sbjct: 679 VGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADI 738 Query: 678 DDRGKIKLSMKVVDQN 693 D+RGKI L + VV+++ Sbjct: 739 DNRGKISL-VPVVEED 753 >gi|227875834|ref|ZP_03993960.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris ATCC 35243] gi|227843582|gb|EEJ53765.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris ATCC 35243] Length = 794 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 285/729 (39%), Positives = 427/729 (58%), Gaps = 45/729 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +ARQ+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 17 KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ VM + + V Sbjct: 77 AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183 V++ A+S + L+GLPF GP+ G ++ I+GQ+V P + +Q + ++ V+G +D Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196 Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228 A++MVE E Q + + ++ G E KPVI + + A + Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286 P+ D +D E M ++ DL + I +K R + +++ + + E + Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314 Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E E+ + F+ ++ K+VR +L + R+DGR + +R ++A+V +L R HGS+LF RG+ Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIGHG LA Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+AGIAMG Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494 Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 L+ + G+D F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++V A Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QA+ RL IL+ M + ++ +L PR+ + IP D+I VIG GK+I I E Sbjct: 555 LGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK FGAF+ Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673 Query: 639 FCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL-------SM 687 +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L ++ Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSLLAVVDDEAV 733 Query: 688 KVVDQNTGK 696 D+N+G+ Sbjct: 734 TTADENSGE 742 >gi|227549063|ref|ZP_03979112.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium lipophiloflavum DSM 44291] gi|227078845|gb|EEI16808.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium lipophiloflavum DSM 44291] Length = 776 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/719 (38%), Positives = 419/719 (58%), Gaps = 45/719 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETG++ARQ+ G+V E T++LAT ++ +D DFFPLTV+ +ER Y Sbjct: 53 DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLATTTASKNPRDNIDFFPLTVDVEERMY 112 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ + + V Sbjct: 113 AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPDEYYDV 172 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSGT 181 V++ ASAA LSGLP G V ++ + GQ+V P ++ D ++ V+G Sbjct: 173 VAINGASAATQLSGLPVSGAVGAVRMALLTDDQHPEGQWVAFPNHEQHDHCVFEMVVAGR 232 Query: 182 ----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMC 225 A++MVE A +V D + G + KP I+ + + LA+ Sbjct: 233 VVDGDVAIMMVEAGAGASVVKLVADGAPAPTEETVAEGLDAAKPFIKTLCETQAALAEET 292 Query: 226 AKE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 AKE P D K +S +E+ ++ + L + ++++++ ++ Sbjct: 293 AKETQEFELFPAYSD-KVYSAVEKRAAKKLATLLTIQGKKDRDDATNAYMEEIEETLLDK 351 Query: 279 FSSEHS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333 F + + EI + + + +VR +L + R+DGR +RD+ +V L+ Sbjct: 352 FDFDDDDEDEYTQASKEIRAAYNALMKSIVREKILTEGFRIDGRGVSDIRDLEVEVELIP 411 Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393 R HGS+LF RG+TQ + V TL + EQ +DSL ++ HYNF P +TGE R+G+ Sbjct: 412 RAHGSALFERGETQILGVTTLDMLKMEQTLDSLQPETAKRYIHHYNFPPYSTGETGRVGS 471 Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453 P RREIGHG LA RA+ PV+P +FPYT+R VSE S+GS+SM +VC S+L+L +AGV Sbjct: 472 PKRREIGHGALAERALIPVIPPREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAGV 531 Query: 454 PISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 P++ PVAGIAMGLV DG ++ L+DI G ED G MDFKV+GT ITA+Q+D K+ Sbjct: 532 PLAAPVAGIAMGLVSGEVDGATKYVALTDILGAEDAFGDMDFKVSGTPDFITALQLDTKL 591 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GI ++V AL+QA+ R IL+ M++V+ + ++ P++ + +P +I VIG Sbjct: 592 DGIPSEVLVSALEQARDAREAILDTMAEVI-DGPDEMNPLAPKITAINVPVSKIGEVIGP 650 Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627 GK+I I E+TGA+++I+DDGT+ +++++ +AA + I I + +P+V + Y G V Sbjct: 651 KGKMINSITEETGAEISIEDDGTIYVSAATGESADAAIDKINGIANPQMPKVGERYLGTV 710 Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 VK + FGAFV DGLVHIS+L ++R+ K DVV G+ + V++ D D+RGKI L Sbjct: 711 VKTVAFGAFVSILPGTDGLVHISKLGGSQRIDKVEDVVNVGEKIEVEIADIDNRGKISL 769 >gi|269977469|ref|ZP_06184441.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris 28-1] gi|306819115|ref|ZP_07452829.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] gi|269934385|gb|EEZ90947.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris 28-1] gi|304648091|gb|EFM45402.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] Length = 794 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 285/729 (39%), Positives = 426/729 (58%), Gaps = 45/729 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +ARQ+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 17 KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ VM + + V Sbjct: 77 AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183 V++ A+S + L+GLPF GP+ G ++ I+GQ+V P + +Q + ++ V+G +D Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196 Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228 A++MVE E Q + + ++ G E KPVI + + A + Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286 P+ D +D E M ++ DL + I +K R + +++ + + E + Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314 Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E E+ + F+ ++ K+VR +L + R+DGR + +R ++A+V +L R HGS+LF RG+ Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIGHG LA Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+AGIAMG Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494 Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 L+ + G+D F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI +++V A Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QA+ RL IL+ M + ++ +L PR+ + IP D+I VIG GK+I I E Sbjct: 555 LGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK FGAF+ Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673 Query: 639 FCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL-------SM 687 +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L + Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSLLAVVDDEAA 733 Query: 688 KVVDQNTGK 696 D+N+G+ Sbjct: 734 TTADENSGE 742 >gi|298345251|ref|YP_003717938.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii ATCC 43063] gi|315656413|ref|ZP_07909302.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235312|gb|ADI66444.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii ATCC 43063] gi|315492972|gb|EFU82574.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 830 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 281/729 (38%), Positives = 422/729 (57%), Gaps = 43/729 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +A+Q+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 55 KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ V+ + + V Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 V++ A+S A L+GLPF GP+ G ++ I+GQ+V P E +Q + ++ ++G Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234 Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222 +D A++MVE + + D++ D + + KP I+ + + Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294 Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 K + P+ D +D E M ++ DL + I +K R + +++ + + E Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352 Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 + E E+ + F+ ++ K+VR +L + R+DGR + +R +SA+V +L R HGS+L Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIG Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+A Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532 Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL+ ++G F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ M + + +L PR+ + IP D+I VIG GK+I Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK FG Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AF+ +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L VV Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHA-VV 770 Query: 691 DQNTGKPIV 699 D G+ + Sbjct: 771 DDEDGEAVT 779 >gi|257068221|ref|YP_003154476.1| polynucleotide phosphorylase/polyadenylase [Brachybacterium faecium DSM 4810] gi|256559039|gb|ACU84886.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Brachybacterium faecium DSM 4810] Length = 753 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 275/719 (38%), Positives = 414/719 (57%), Gaps = 47/719 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV + T+V + K+ DFFPLT++ +ER YA Sbjct: 20 YGRREIRFETGRLAQQAAGAVAVYLDDDTMVFSATAVSNKPKEHFDFFPLTIDVEERMYA 79 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP + IL +R+ DR +RP F K +NE QV++ VM + + + VV Sbjct: 80 AGRIPGSFFRREGRPGTDAILAARLTDRPLRPAFVKGLRNEVQVVLTVMANGPDDAYDVV 139 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-----NGQYVLNPRLDE-DQGSLDLFVSG--T 181 + ASA+ +SGLPF GP+ ++ + GQ+V P + D+ + V+G Sbjct: 140 GINGASASTQISGLPFSGPIGAVRIALMPNSQGGGQWVAFPTFSQLDEAVFSMVVAGRIV 199 Query: 182 QD--AVLMVELEANQLS-------------EDVVLDAI----IFGHNECKPVIEAISKLA 222 +D A++MVE EA S E VV + I +F + C E + A Sbjct: 200 EDDVAIMMVEAEATDNSWNLIKEQGAIAPTESVVAEGIEAAKVFIRSLCVAQQELAATAA 259 Query: 223 KMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 K + P+ +D +D + +E ++ + E + ++ K R ++ + L ++ S Sbjct: 260 KPVREFPLFLDYQDDAYEIVEAAATERLAEVMSIAA----KTEREERTEQLLAEITEELS 315 Query: 281 SEHSSWN--EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E E E+ F + +VVR +L + VR+DGR +R +SA+V +L R HGS Sbjct: 316 GEGKQLEDREKEVTGAFRALTKQVVRKKVLTEGVRIDGRGLRDIRALSAEVEVLPRVHGS 375 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 +LF RG+TQ + V TL + EQ +DSL +R ++ HYNF P +TGE R+G+P RRE Sbjct: 376 ALFQRGETQIMGVSTLNMLKMEQQIDSLGPVERKRYIHHYNFPPYSTGETGRVGSPKRRE 435 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 +GHG LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ P Sbjct: 436 VGHGMLAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 495 Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGL+ D + + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ Sbjct: 496 VAGIAMGLISDTIEGEIRYAALTDILGAEDAFGDMDFKVAGTGEFITAIQLDTKLDGLPA 555 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 +++ AL QA RL IL + + + ++ ++ PRV + +P D+I VIG G++I Sbjct: 556 SVLTGALSQAHEARLAILGVLGEAI-DAPDEMSPNAPRVLAVTVPVDKIGAVIGPKGQMI 614 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 I + TGA + I+DDGTV I ++ EAAR + +I + VPEV + Y G VV+V+D Sbjct: 615 NQIQDDTGADITIEDDGTVYIGATDGPSAEAARSAVNAIANPMVPEVGERYLGTVVRVVD 674 Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 FGAF+ +DGL+H++QL +RV DV G + V++ + D RGKI L++ Sbjct: 675 FGAFISLTPGKDGLLHVTQLRKLNGGKRVDNVEDVATVGQKIEVEIREIDARGKISLAV 733 >gi|269219591|ref|ZP_06163445.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210833|gb|EEZ77173.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 765 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 283/709 (39%), Positives = 414/709 (58%), Gaps = 40/709 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETG +ARQ++G+ LA + T V A ++ K+ DFFPLTV+ +ER+YA Sbjct: 18 FGTRTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ VM + + + V+ Sbjct: 78 AGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAYDVL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AAS A L+GLPF GP+ G ++ I+GQ+V PR E + + + ++G A Sbjct: 138 AINAASMATSLAGLPFSGPIGGTRMALIDGQWVAFPRWSELKRATFSMAIAGRVVGDDVA 197 Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCAKEPIV 231 ++MVE +A + + D V+ A + G KPVI EA SKL + C K V Sbjct: 198 IMMVEAQAPEHA-DAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCEAQSKLVEECGKP--V 254 Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEHSSW 286 D F +E + ++E + F P K R + +++L + +V + Sbjct: 255 GDFPFFPDYTDEQYEAVEEKIG-GRFAPILGIVAKAERDEALNELTESVVEELAEAFPEE 313 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 +V + K +R +L + VRMDGR +R I+A+ G+L R HGS+LF RG+T Sbjct: 314 EAAIAAAVNAAFK-KTMRHHVLTEGVRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGET 372 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 Q + V TL + EQ +D+LS ++ HYNF P +TGE R+G+P RREIGHG LA Sbjct: 373 QILGVTTLNMLKMEQQLDNLSPATSRRYIHHYNFPPYSTGETGRVGSPKRREIGHGHLAE 432 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 A+ LP +FPY +R VSE S+GSSSM +VC S+L+L +AGVP+ PVAGIAMGL Sbjct: 433 IALESQLPGREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAMGL 492 Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 V DG+ + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI ++ AL Sbjct: 493 VSATIDGETKYCTLTDILGAEDALGDMDFKVAGTREYVTALQLDTKLDGIPAAVLDAALG 552 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA+ R IL+ +++ + + ++ PR+ + IP D+I VIG GK+I I E TG Sbjct: 553 QARDARFAILDLITEAI-DGPDEMAATAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640 A+++I+DDGTV I ++ EAAR+ + +I + +PEV + + G VVK FGAF+ Sbjct: 612 AEISIEDDGTVFIGATDGPSAEAARQAVNAIANPQMPEVGERFVGTVVKTTTFGAFISLA 671 Query: 641 GARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 RDGL+HISQ+ +RV DV+ GD V V++ + D RGK+ L Sbjct: 672 PGRDGLLHISQIRRIVGGKRVENVEDVLNVGDKVEVEIAEIDPRGKVSL 720 >gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] Length = 481 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 235/481 (48%), Positives = 335/481 (69%), Gaps = 2/481 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ +G+ F +L+D Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480 Query: 479 I 479 I Sbjct: 481 I 481 >gi|315655673|ref|ZP_07908571.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] gi|315489737|gb|EFU79364.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] Length = 830 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 281/729 (38%), Positives = 421/729 (57%), Gaps = 43/729 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +A+Q+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 55 KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ V+ + + V Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 V++ A+S A L+GLPF GP+ G ++ I+GQ+V P E +Q + ++ ++G Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234 Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222 +D A++MVE + + D++ D + + KP I+ + + Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294 Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 K + P+ D +D E M ++ DL + I K R + +++ + + E Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIAYKLTRENRETEIRDAAIEKLAVE 352 Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 + E E+ + F+ ++ K+VR +L + R+DGR + +R +SA+V +L R HGS+L Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412 Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIG Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+A Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532 Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 GIAMGL+ ++G F L+DI G ED G MDFKVAGT ITA+Q+D K+ GI ++ Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ RL IL+ M + + +L PR+ + IP D+I VIG GK+I Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634 I E TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK FG Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711 Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 AF+ +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L VV Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHA-VV 770 Query: 691 DQNTGKPIV 699 D G+ + Sbjct: 771 DDEDGEAVT 779 >gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp. SB155-2] gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp. SB155-2] Length = 732 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 279/724 (38%), Positives = 420/724 (58%), Gaps = 64/724 (8%) Query: 19 ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYL 78 E G +A+Q++G+VL G+TV+LATVV ++ + D +DF PLTV Y E++YA GKIPGG++ Sbjct: 17 EFGEVAKQTNGSVLLKSGKTVMLATVVMEKEMVD-EDFLPLTVQYIEKSYAAGKIPGGFV 75 Query: 79 RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138 +RE +P + E L +R++DR++RPLF K Y T + + V+ D ES V+++ AASAAL Sbjct: 76 KREQKPGDFETLTARIVDRALRPLFPKGYLYPTVITVMVLSADPESDLQVLALNAASAAL 135 Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL------- 190 +S +P V G +V ++G+ + NP L + + +LDL+++GT++ +LM+E+ Sbjct: 136 FVSDIPVRKAVSGLRVAKVDGEVLFNPPLSKLKESTLDLYLAGTKEELLMIEMAAIGSYK 195 Query: 191 ------------------------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226 E N + E+ + I G + + K A Sbjct: 196 TEVVPTTVDPLMDPTLAEEVITIKEPNAMKEEELASIIAQGKDVIQIACNEYEKYFIESA 255 Query: 227 KE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279 KE P ID ++ +EE + IKE ++ K R + + ++ KK+ Sbjct: 256 KEQLELELLPQTIDEDIWTYVEEIYAADIKEAVQAMA----KSERNELLKEIAKKISEDD 311 Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 ++ W I V E + K+VR ++L++ R DGR + VR I + +L HGS Sbjct: 312 VAKEQGWEYETIYKVVEKYKRKIVREMILNEGKRADGRGLKDVRPIDIKTNILPSAHGSC 371 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 LF RG+TQA+VV T+G + D Q + L+ G + FM+HYNF P + GE + AP RR Sbjct: 372 LFTRGETQALVVCTIGEKTDAQMYEMLTSKGPEYEHFMVHYNFPPFSVGEAKPISAPGRR 431 Query: 398 EIGHGRLARRAIHPVL--PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455 E+GHG LARRA+ PV+ P+ T R+VSEI ES+GSSSMATVCG +LAL A + + Sbjct: 432 ELGHGNLARRALEPVVDVPEDK----TYRLVSEILESNGSSSMATVCGGALALKAANIDL 487 Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 + VAG+AMGL+ + D + IL+DI G EDH G MDFKVAGT G+TAMQMD+K+GG+ + Sbjct: 488 ADLVAGVAMGLIVEDDKYAILTDIMGLEDHDGDMDFKVAGTHDGVTAMQMDIKLGGVQQE 547 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I+ ALQQA+ RLHIL M + + + E P + + P +I ++IG GK I+ Sbjct: 548 ILEQALQQAREARLHILKIMEEAAEKIEIN-EENLPSSHTITVHPSKIVDIIGQAGKTIK 606 Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP-------EVNKIYKGQV 627 I+E+ ++ID D G VK+ + ++ AA + I+ IT+ P + I KG++ Sbjct: 607 EIIEKFEVSIDIDRDKGKVKVTGKNRPKVIAACDYIQEITNKPKPEPVKFQEGDILKGKI 666 Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686 + +FGAFV G DGL+HIS+LS+ RV + DVV GD V V++L +G KI+L Sbjct: 667 KRTTNFGAFVELPGGVDGLLHISKLSSGRVERVEDVVNIGDEVEVEVL--SQKGHKIELG 724 Query: 687 MKVV 690 ++ V Sbjct: 725 LRQV 728 >gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa] gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa] Length = 730 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 260/709 (36%), Positives = 402/709 (56%), Gaps = 70/709 (9%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I R + +ETG I RQ+ G+V T GET+V +V D + DF+PL+VNYQE Sbjct: 22 SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPSDFYPLSVNYQE 81 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +RE + ++E+LI R+IDR +RP K + +ETQ++ V+ +D S Sbjct: 82 RFSAAGRTSGGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQILSWVLSYDGLHS 141 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 P +++ AA A+ LS +P + G +V ++ ++++NP E ++ LDL ++GT A Sbjct: 142 PDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESELDLLLAGTDSA 201 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEEE 243 + M+E N L+E+ +LDA+ G + + + + L K C K ++ K ++L + Sbjct: 202 IFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNEVGVLVKKCGKAKMLDAIKLPPAELYKH 261 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSS------------ 285 + ++ ++L I K R K + L++K++S Y S + Sbjct: 262 VEEIAGDELVKILQITSKVPRRKALASLEEKVLSILTEKGYVSKDERFGTPETVADLLEV 321 Query: 286 -------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314 ++E ++ VF+++ +K +R +++ R Sbjct: 322 EDEDEEIVVDGEVDEGDVHIKPIGRKFSPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 381 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373 DGR + +R I ++ G+L R HGS+LF RG+TQ++ VVTLG ++ Q VD+L + Sbjct: 382 DGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEFKR 441 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433 F + Y F P GEV R+GAPSRREIGHG L RA+ P+LP FPYT+R+ S ITES+ Sbjct: 442 FYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFPYTVRVESTITESN 501 Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487 GSSSMA+VCG LAL DAGVP+ +AGIAMG+V D ++F +ILSDI+G ED G Sbjct: 502 GSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDASG 561 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFKVAG + GITA QMD+K+GGI+ +M AL QA+ GR HIL EM K +L Sbjct: 562 DMDFKVAGNEDGITAFQMDIKVGGITLPVMRKALLQARDGRQHILAEMLKCSPFPSERLS 621 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606 ++ P + IM + P ++ +IG GGK ++ I+E+TG + ++ +DG VKI + L+ IE + Sbjct: 622 KYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEETGVEAIDTREDGIVKITAKDLSSIEKS 681 Query: 607 REMIRSITDVPEVNKIYK-----------GQVVKVMDFGAFVHFCGARD 644 + +I +T VP V IY+ ++ V +G FV R+ Sbjct: 682 KSIINQLTMVPNVGDIYRHVLSLSCFSLNCEIKSVAPYGVFVEIAPGRE 730 >gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri RM4018] gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri RM4018] Length = 725 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 277/726 (38%), Positives = 425/726 (58%), Gaps = 56/726 (7%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E G+ E ++A+QS+GAVLA G VVLATVV + +DF PLTV Y E+T Sbjct: 6 EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y T + + V+ D Sbjct: 66 YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +S+ AA+AAL S LP + V G +V I V+NP ++ + +LDL+V+G+++ +L Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKEELL 185 Query: 187 MVELEA--------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226 M+E++ N++ ED +++AI F N K K + + Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245 Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282 KE ++ F+ +EE + +++ D++ + K R Q+ D+ K M+S +E Sbjct: 246 KEKFEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAK-MIS--KNE 301 Query: 283 HSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + NE E +++E + + ++VR ++++++VR DGR + VR IS + +L TH S Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361 Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 LF RG+TQA+V+ T+ +D Q + L+ T +FM+HYNF + GE M RR Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 E+GHG LA++A+ + + + T+R+VSEI ES+GSSSMATVCG SLAL AG+PIS Sbjct: 422 ELGHGNLAKKALEATIDK--DYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517 VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT GITA+QMD+K+GGI +++ Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539 Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577 AL QAK GR HIL+ M +E + P +E AI P +I VIG G I+ I Sbjct: 540 KEALLQAKEGRTHILSLMKD--AEKDIVPSGALPLIEQFAIDPSKIMVVIGKAGATIKEI 597 Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-DVP---------EVNKIYK-- 624 +E+ +++D ++GTVK++ + I A E I++I+ + P + K+Y Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657 Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 G+V ++ DFGAF+ +GL+HIS++S +RV +DV+ G + VK+L + Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716 Query: 681 GKIKLS 686 +I+LS Sbjct: 717 DRIELS 722 >gi|323356776|ref|YP_004223172.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum StLB037] gi|323273147|dbj|BAJ73292.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum StLB037] Length = 765 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 278/731 (38%), Positives = 421/731 (57%), Gaps = 48/731 (6%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+A+Q+ GAV A E T++L+ + ++G DFFPLTV+ +ER+YA Sbjct: 18 FGTRTIRFETGRLAQQAQGAVAAYLDEETMLLSATSAGKHPREGFDFFPLTVDVEERSYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL+ R+IDR +RP F +NE Q+++ V+ + Sbjct: 78 AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPGEFYDAL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDE-DQGSLDLFVSGT- 181 ++ AAS + +SGLPF GP+ G ++ I G Q+V P+ ++ + DL V+G Sbjct: 138 AINAASMSTQISGLPFSGPIAGVRLALIPGHGEHADQWVAFPKAEQLEDAVFDLIVAGRV 197 Query: 182 ----QDAVLMVELEANQLS------------EDVVLDAIIFGHNECKPVIEAISKLAKMC 225 A++MVE EA + S E VV + + + +++A +++A+ Sbjct: 198 LDDGDVAIMMVEAEATEGSWNLIKGGATKPNEQVVAEGLEAAKPFLRQLVDAQNEVARTA 257 Query: 226 AKEPIVIDSKDFSKLEEEMSQMIK---EDLRVSCF-IPEKYVRCKQIDDLKKK-----MV 276 +KE + F +E + D V + I +K R D++K + Sbjct: 258 SKE--IQSFPVFPAYSQETYDFVAGRAYDRLVPVYQIADKQERQNADDEVKTSVKEQLLA 315 Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336 + S E + E + ++ + +VR +L + VRMDGR +R + A+V ++ R H Sbjct: 316 AVESGELPAVATLEFNAAYKSVTKTIVRGRILAEGVRMDGRGLADIRPLDAEVQVIPRVH 375 Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 GS++F RG+TQ + V TL + EQ +DSLS ++ HYNF P +TGE R+G+P R Sbjct: 376 GSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITSKRYLHHYNFPPYSTGETGRVGSPKR 435 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 REIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 436 REIGHGFLAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLR 495 Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512 PVAGIAMGLV D D + L+DI G ED LG MDFKVAGT ITA+Q+D K+ GI Sbjct: 496 APVAGIAMGLVTDEVDGQTRYAALTDILGAEDALGDMDFKVAGTAEFITAIQLDTKLDGI 555 Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572 +++ AL QAK RL ILN ++ + ++ ++ PRV + IP D+I +IG GK Sbjct: 556 PSSVLAAALTQAKEARLTILNVLNAAI-DAPDEMAPTAPRVISVQIPVDKIGELIGPKGK 614 Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKV 630 I I ++TGA+++I+DDGTV I ++ EAAR + +I + PEV + + G VVK+ Sbjct: 615 TINSIQDETGAQISIEDDGTVYIGATDGPSAEAARAQVNAIANPTNPEVGEQFLGTVVKI 674 Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAFV +DGL+H+S++ +RV DV+ G + V++ DDRGK+ L Sbjct: 675 ATFGAFVSLLPGKDGLLHVSEVRKLAGGKRVENVEDVLSVGRKILVRITKIDDRGKLSLE 734 Query: 687 MKVVDQNTGKP 697 V+D++ P Sbjct: 735 -PVLDEDAATP 744 >gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] Length = 746 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 280/727 (38%), Positives = 408/727 (56%), Gaps = 78/727 (10%) Query: 19 ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYL 78 + G++A+Q+ GA L TV+LATV D + + ++F PLTV Y E++YAVGKIPGGY+ Sbjct: 15 DIGKVAKQAAGAALLKIKNTVILATVARDDT-QVSENFVPLTVQYVEKSYAVGKIPGGYI 73 Query: 79 RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138 +RE++P + E L SR+IDRS+RPLF K Y TQ+ + V+ D E V ++ AA AAL Sbjct: 74 KRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQVAALNAAGAAL 133 Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLMVELEA----- 192 LS +P V G ++ Y++G YV+NP + +LDL+V+GT++ +LM+E+ + Sbjct: 134 YLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKEELLMIEMRSIASME 193 Query: 193 ---------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225 N+ ED +L AI N A Sbjct: 194 SVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAITEATTAYENTFVSL 253 Query: 226 AKEPIVIDSKD-------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278 KE ++D K F+ ++E + + + + K +D + K ++ Sbjct: 254 KKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASELSKIVDAILKDNIAT 313 Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 W++ + SV + + K+VR ++++K+VR DGR +R IS + LL HGS Sbjct: 314 L----EGWDKALVDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIETNLLPLAHGS 369 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 LF RG TQA+V+ TLG +D Q D L+ + + FM++YNF + GE S + AP R Sbjct: 370 CLFTRGQTQALVIATLGNDKDAQMYDLLTEKSSVSDTFMVNYNFPGFSVGEASPLRAPGR 429 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 RE+GHG LARRA+ PV+ T+R+VSEI ES+GSSSMAT+CG +LAL AGV I Sbjct: 430 RELGHGNLARRALEPVV--DINRLQTIRLVSEILESNGSSSMATICGGALALKAAGVEIE 487 Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 K VAGIAMGLV +GD +LSDI G EDH G MDFKVAGT GITA+QMD+K+GGIS ++ Sbjct: 488 KLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGISRDV 547 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QA+ GR HIL M K SE + P++E+ + P +I ++IG GK IR Sbjct: 548 LKEALYQAREGREHILAIMEKA-SEEIVINNAVLPKLELFNVDPSKIVDIIGQAGKTIRE 606 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615 I+E+ +++D + G VKIA + +++AA+E I IT+ Sbjct: 607 IIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGHGRDRDNKYPT 666 Query: 616 -----VPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 VP +++ G V +++DFGAFV G DGL+H+S+++ RV K SD + Sbjct: 667 KESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVDKVSDYLALEQ 726 Query: 669 TVWVKLL 675 V VK+L Sbjct: 727 KVRVKIL 733 >gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] Length = 982 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 266/703 (37%), Positives = 419/703 (59%), Gaps = 27/703 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E GR + ETG++AR ++G+V+ + +T VL+TV +S + +DF PLTV+YQE+ Sbjct: 64 EFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 123 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI------INVMQHD 121 YA G IP Y+RRE P E E+L R+IDR IRPLF + +E QV+ +NV+ D Sbjct: 124 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNATIIMVNVISSD 183 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180 + P V++ A+SAALMLS +P+ GP+ +V I+G +VLNP +DE L+L + Sbjct: 184 GKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYAC 243 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSK 235 ++D LM++++A +++E + + H E I +LAK K+ +I K Sbjct: 244 SRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDK 303 Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 + K+ I+E S + K+ R + ++++ + + + E + + Sbjct: 304 SYEKIRTLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAV 361 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + ++ +V+R +++K +R+DGR + VR + + HGS+LF RGDTQ + VTLG Sbjct: 362 DTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLG 421 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 D Q +DS+ G FM+HY+F P + EV++ G +RRE+GHG LA +A+ VLP Sbjct: 422 APGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPP 481 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471 +FPYT+R+ SE+ SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D Sbjct: 482 EGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTG 541 Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + IL+DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ +L+ A++ R Sbjct: 542 DISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKAR 601 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL+ M + +S +R +PR+ ++ D +R ++ K I ++TGA+V++ Sbjct: 602 NQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV- 656 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 DGTV I + + ++ A E + + EV + YKG V + ++GAFV F G + GL+ Sbjct: 657 SDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLL 716 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 HIS+LS ++V+K SDVV G + + + D RG IKLS+K Sbjct: 717 HISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKAT 759 >gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group] Length = 865 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/675 (38%), Positives = 397/675 (58%), Gaps = 74/675 (10%) Query: 89 ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM--------- 139 +L+ R+IDR +RP K + ETQ++ V +D SP +++ AA A+ Sbjct: 124 VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYLPQSF 183 Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 LS +P + + G ++ IN Q+V+NP ++ D LDL ++GT A+LM+E + Sbjct: 184 LCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDF 243 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKEDL 252 L+E+ +L A+ G + + +AI L + C K+ + D+ D +L + + ++L Sbjct: 244 LTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYRHVEDISGDEL 302 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW-------------------- 286 + I EK +R K + L++K+++ Y + + SS Sbjct: 303 VKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVD 362 Query: 287 ---NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 +EGE+ VS VF+++ +K +R +++ R DGR +R Sbjct: 363 GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRP 422 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-DFMMHYNFLPC 383 I++Q GLL R HGS+LF RG+TQA+ VVTLG + Q +D+L T+ + F + Y F P Sbjct: 423 INSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPS 482 Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443 + GEV R+GAP+RREIGHG LA RA+ P+LP FPYT+R+ S ITES+GSSSMA+VCG Sbjct: 483 SVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCG 542 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGTD 497 LAL DAGVPI PVAGIAMGLV D +F +ILSDI+G ED G MDFKVAG + Sbjct: 543 GCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNE 602 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 +GI+A QMD+K+ GI+ IM AL QA+ GR HILNEMSK L + P + +M Sbjct: 603 NGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMK 662 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616 + P+++ +IG GGK I+ I+E+TG ++ DDGTVKI + L+ +E ++ +I ++T V Sbjct: 663 VKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMV 722 Query: 617 PEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 P+V +IY+ +K + +GAFV R+GL HIS+LS+ +AK D K GD + VKL+ Sbjct: 723 PKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLI 782 Query: 676 DFDDRGKIKLSMKVV 690 + +D+G+++LS + + Sbjct: 783 EINDKGQLRLSSRAL 797 >gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group] Length = 778 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 264/675 (39%), Positives = 397/675 (58%), Gaps = 74/675 (10%) Query: 89 ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM--------- 139 +L+ R+IDR +RP K + ETQ++ V +D SP +++ AA A+ Sbjct: 37 VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYLPQSF 96 Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 LS +P + + G +V IN Q+V+NP ++ D LDL ++GT A+LM+E + Sbjct: 97 LCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDF 156 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKEDL 252 L+E+ +L A+ G + + +AI L + C K+ + D+ D +L + + ++L Sbjct: 157 LTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYRHVEDISGDEL 215 Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW-------------------- 286 + I EK +R K + L++K+++ Y + + SS Sbjct: 216 VKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVD 275 Query: 287 ---NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324 +EGE+ VS VF+++ +K +R +++ R DGR +R Sbjct: 276 GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRP 335 Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-DFMMHYNFLPC 383 I++Q GLL R HGS+LF RG+TQA+ VVTLG + Q +D+L T+ + F + Y F P Sbjct: 336 INSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPS 395 Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443 + GEV R+GAP+RREIGHG LA RA+ P+LP FPYT+R+ S ITES+GSSSMA+VCG Sbjct: 396 SVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCG 455 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGTD 497 LAL DAGVPI PVAGIAMGLV D +F +ILSDI+G ED G MDFKVAG + Sbjct: 456 GCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNE 515 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 +GI+A QMD+K+ GI+ IM AL QA+ GR HILNEMSK L + P + +M Sbjct: 516 NGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMK 575 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616 + P+++ +IG GGK I+ I+E+TG ++ DDGTVKI + L+ +E ++ +I ++T V Sbjct: 576 VKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMV 635 Query: 617 PEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 P+V +IY+ +K + +GAFV R+GL HIS+LS+ +AK D K GD + VKL+ Sbjct: 636 PKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLI 695 Query: 676 DFDDRGKIKLSMKVV 690 + +D+G+++LS + + Sbjct: 696 EINDKGQLRLSSRAL 710 >gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489] Length = 714 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 280/716 (39%), Positives = 415/716 (57%), Gaps = 74/716 (10%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 + A+Q G+V G VVLATV D +DF PLTV Y E+ YA GK PGGY++RE Sbjct: 19 KFAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQYIEKAYAAGKFPGGYIKRE 78 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 ++P + E L +R++DRS+RPLF K Y TQ+ I V+ D ++ ++++ AASAAL +S Sbjct: 79 AKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILVLSADQDADLQLLALNAASAALYVS 138 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE--------- 191 +P PV ++ I +V+NP L + ++ SLDLFVSG + +LM+E+ Sbjct: 139 EIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVNEDLLMIEMRTFGGIKTQE 198 Query: 192 ------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245 AN+L E+ +++A+ N AIS+ +K+ V KD+ K + Sbjct: 199 GQAIFSANELQEEEMIEALEIAKN-------AISQKSKL-----FVEHFKDYIKPSLNLE 246 Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------WNEG---- 289 Q K + C +Y++ + + +LK + S +E S W E Sbjct: 247 QTRKTYV---CQKILEYIQSEHLGELKGIIQSLSKTERHSLLMAFARKIQKEWEEKYPQD 303 Query: 290 ------EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343 + I+ +++R ++L++ R DGR + VR IS L H S LF R Sbjct: 304 TQDLSKRTLETILKIKREIIRAMVLEESTRADGRGLKEVRPISIDTNFLPNAHSSVLFTR 363 Query: 344 GDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 G TQA+VV TLG D Q + L+ + + FM+HYNF P + GE S + AP RRE+GH Sbjct: 364 GQTQALVVATLGGDMDAQSYELLTNKASSKERFMVHYNFPPFSVGEASSISAPGRRELGH 423 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA+RA+ + T+R+VSEI ES+GSSSMATVCG SLAL+ AG+ + VAG Sbjct: 424 GNLAKRALEASIINGDM--RTIRLVSEILESNGSSSMATVCGGSLALVAAGIECTSLVAG 481 Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 +AMGLV + D +++L+DI G EDH G MDFKVAG+ GITAMQMD+K+GG++ I+ AL Sbjct: 482 VAMGLVCENDKYVVLTDIMGLEDHDGDMDFKVAGSRHGITAMQMDIKLGGLNMQILKDAL 541 Query: 522 QQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 QAK R HILN M + +L+ES L P +I +I P +I VIG GK I+ Sbjct: 542 NQAKEARNHILNLMEEARGKIILNESVL------PSSQIFSIEPSKIIEVIGQAGKTIKE 595 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT----DVPEVNKIYKGQVVKVM 631 I+E+ G ++++ ++G VK++ S+ ++EAA+E I IT D+ +V IY+G+V KV+ Sbjct: 596 IIEKFGVAIDLNRENGEVKVSGSNKEKVEAAKEHILKITKNLQDIYKVGDIYQGKVKKVV 655 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +FGAFV DGL+HIS+++ R K SDV+ G+ V V++L ++ K++L + Sbjct: 656 EFGAFVELPEGYDGLLHISKITNSRDEKASDVLSVGEMVEVEVLSL-NKNKVELGL 710 >gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari RM2100] gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari RM2100] Length = 702 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 271/673 (40%), Positives = 399/673 (59%), Gaps = 49/673 (7%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 +T ++A+Q+ GAVL VVLATV + + + +DF PLTV Y E+ YA GKIPGGY Sbjct: 14 FDTDKVAKQAAGAVLMQEKNAVVLATVAREEKMVE-EDFLPLTVQYIEKAYAAGKIPGGY 72 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 ++RE++P ++E L +R+IDRS+RPLF K Y TQ+++ V+ D E V+S+ AAS A Sbjct: 73 VKRETKPGDSETLSARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVMSLNAASVA 132 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192 L LS +P + PV G ++ IN ++VLNP E + S LDL+V+G +D +LM+E+ A Sbjct: 133 LYLSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYVAGVKDELLMIEMRALSNK 192 Query: 193 -------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238 N+LSED L A+ F G NE + A K +K+ K I+S + Sbjct: 193 KDNQHCMNELSEDDTLKALDFASSAILRGSNEYEKAFAAYRKNSKLEFK----IESDNIQ 248 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++ + I + L+++ K R +I + K++ S + + W +I Sbjct: 249 IIDYIKNTYITK-LKIAINQMAKSERASEILQIAKEIESESMAIENEWKFEDIEKALHVC 307 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + ++VR ++++ R DGR + VR I + +L HGS LF RG TQA+VV TLG Sbjct: 308 KRELVRNQIINENKRADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVVATLGNDN 367 Query: 359 DEQYVDSLSGTQRN----DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 D Q D L T++N FM++YNF + GE S + AP RRE+GHG LA+RA++P + Sbjct: 368 DAQMSDML--TEKNPICEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSV- 424 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 A + +T+R+VSEI ES+GSSSMATVCG +LAL AGV K VAG+AMGLV + + + Sbjct: 425 -DADYIHTIRLVSEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEEEKYA 483 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDH G MDFKVAG+ GITA+QMD+K+GGI + ++ AL QAK R +ILN Sbjct: 484 ILTDIMGLEDHDGDMDFKVAGSHDGITALQMDIKLGGIEQKVLQEALYQAKEARGYILNL 543 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTV 593 M + E + P+VEI + P++I ++IG GGK I+ I+E+ +++D D G V Sbjct: 544 MQEA-CEKIIVNEAILPKVEIFNVDPNKIPDIIGQGGKTIKDIIEKFEVNIDLDRDKGEV 602 Query: 594 KIASSSLAEIEAAREMI------------RSITDVP--EVNKIYKGQVVKVMDFGAFVHF 639 KIA I ++E I R ++P ++ + + G+V KV++FG FV Sbjct: 603 KIAGIDHNLISQSKEYILNLLHSKGSNKRRDKKEMPKFDIGEEFLGRVQKVVEFGVFVEL 662 Query: 640 CGARDGLVHISQL 652 DGL+H S++ Sbjct: 663 KEGVDGLLHNSKI 675 >gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens BL2] Length = 740 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 277/712 (38%), Positives = 415/712 (58%), Gaps = 40/712 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + ++ ETGR+A+Q+ G+ +A ET++ + ++ ++G DFFPLTV+ +ER YA Sbjct: 17 YGSHTIRFETGRLAQQAAGSAVAYLDDETMLFSATSAGKNPREGFDFFPLTVDVEERMYA 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ + +L R+IDR +RP F K +NE QV++ VM + + Sbjct: 77 AGRIPGSFFRREGRPSTDAVLTCRLIDRPLRPSFVKGLRNEVQVVVTVMSIHPDHIYDAL 136 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184 ++ AAS + LSGLPF GP+ G ++ I+ Q+V P + D ++ V+G A Sbjct: 137 AINAASMSTQLSGLPFSGPIGGVRIALIDDQWVAFPNHSQLDDAVFNMVVAGRVVGDDVA 196 Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK----LAKMCAKE---- 228 ++MVE EA + D + + + G KP I + + LA AK Sbjct: 197 IMMVEAEATDNAIDRIKTGATAPTEEVVAEGLEAAKPFISELCRAQQELADSAAKPTVEF 256 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ D +D + E + ++ + + I +K R + L ++ E + E Sbjct: 257 PVFKDYQD--DVYEAVRELAEAKQTENFQIADKQEREAAGEVLLSELFDKLG-ERFAGRE 313 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 EI + +VVR +L +++R+DGR + +R ++A+ ++ R HGS++F RG+TQ Sbjct: 314 KEIAGALNGLTKQVVRKRILTEQIRIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQI 373 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL + EQ++DSLS +M HYNF P + GE R+G+P RREIGHG LA RA Sbjct: 374 LGVTTLNMLKLEQHIDSLSPVTTKRYMHHYNFPPYSVGETGRVGSPKRREIGHGALAERA 433 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP+ FPY +R VSE S+GS+SM +VC S+LA++ AGVP+ PVAGIAMGLV Sbjct: 434 LVPVLPKREDFPYAIREVSEALGSNGSTSMGSVCASTLAMLSAGVPLQAPVAGIAMGLVS 493 Query: 469 D------GDD--FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 D GD + L+DI G ED G MDFKVAGT ITA+Q+D K+ G+ +++ A Sbjct: 494 DVISTDTGDQTAYAALTDILGAEDAFGDMDFKVAGTRDFITAIQLDTKLDGLPASVLGAA 553 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L+QA+ R+ IL+ +++ + ++ ++ PR+ + IP D+I VIG GK+I + E Sbjct: 554 LKQAQEARMVILDVIAEAI-DAPAEMAPTAPRIISVNIPVDKIGEVIGPKGKMINQMQED 612 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638 TGA ++I+DDGTV I ++ A EAAR MI +I + VPEV + Y G VVK M FGAFV Sbjct: 613 TGADISIEDDGTVLIGATDGAAAEAARSMINAIANPQVPEVGERYLGTVVKTMSFGAFVS 672 Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 +DGL+HIS+L +RV DVV G V V++ DDRGK+ LS Sbjct: 673 LTPGKDGLLHISELRKLNDGKRVEDVEDVVGVGQKVQVEITKIDDRGKLSLS 724 >gi|269795632|ref|YP_003315087.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Sanguibacter keddieii DSM 10542] gi|269097817|gb|ACZ22253.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [Sanguibacter keddieii DSM 10542] Length = 735 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 271/721 (37%), Positives = 418/721 (57%), Gaps = 41/721 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ A GET++L+ + KD DFFPLTV+ +ER YA Sbjct: 18 FGTRTVRFETGRLARQAAGSAAAYLDGETMLLSATTVGKHPKDQFDFFPLTVDVEERMYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 G+IPG + RRE RP+ IL R+IDR +RP F K +NE QV++ V+ + + + Sbjct: 78 AGRIPGSFFRREGRPSTEAILTCRLIDRPLRPTFVKGLRNEVQVVVTVLAAHPDDAYDTL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184 ++ AS + LSGLPF GPV ++ ++GQ+V P+ D+++ D+ V+G A Sbjct: 138 AINVASLSTQLSGLPFSGPVGAVRIALVDGQWVAFPKYSDKEKAVFDMVVAGRVAGDDVA 197 Query: 185 VLMVELEANQLS-------------EDVVLDAI----IFGHNECKPVIEAISKLAKMCAK 227 ++MVE EA S E+VV + + +F C+ ++ AK + Sbjct: 198 IMMVEAEATDNSWTLIKDEGVAAPTEEVVAEGLEASKVFIRQLCEAQAALAARAAKPVRE 257 Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 P+ +D +D ++ +E +++ + + L ++ +K R ++D++K + + + + Sbjct: 258 FPLFLDYQDDAYAAIEAQVATPLGQALTIA----DKQDRENRLDEIKAEALEALAGQFEG 313 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E E+ + + K++R +L VR+DGR +R +SA+V ++ R HGS++F RG+ Sbjct: 314 -REKELSAAVRSVTKKLIRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSAIFERGE 372 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + + TL EQ +DSL R +M +YNF P +TGE R+G+P RREIGHG LA Sbjct: 373 TQIMGITTLNMLRMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ PVAGIAMG Sbjct: 433 ERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMG 492 Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 L+ D D + L+DI G ED G MDFKVAGT +TA+Q+D K+ GI +++ AL Sbjct: 493 LISDTVDGKPRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGAL 552 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 QA+ R IL+ + + + ++ PRV + +P D+I VIG GK+I I E+T Sbjct: 553 TQARDARFAILDVLGEAIDVPD-EMSPHAPRVIAVKVPVDKIGEVIGPKGKMINQIQEET 611 Query: 582 GAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 GA ++I+DDGTV I ++ AE A + VPEV + + G VVK+ FGAF+ Sbjct: 612 GADISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKIAPFGAFISL 671 Query: 640 CGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L V + G Sbjct: 672 SPGKDGLLHISQIRKLVGGKRVENVEDVLSIGQKVQVEIGEVDPRGKLSLHAVVDEAEAG 731 Query: 696 K 696 + Sbjct: 732 Q 732 >gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1] gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1] Length = 729 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 271/715 (37%), Positives = 419/715 (58%), Gaps = 51/715 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 +EI K E +IA+Q+ GAV+ G+ V++A V D + +DF PLTV Y ER Sbjct: 6 IEINLNNLDEKYEFNKIAKQASGAVMYRQGKAVLIAAVAVDEKAVE-EDFLPLTVQYMER 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA KIPGG+++RE++P + E L SR++DRS+RPLF K + + + V+ D E Sbjct: 65 SYAAAKIPGGFIKRETKPGDFETLTSRIVDRSLRPLFPKGFYYPVTISVMVVSSDSEVDM 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AA+AAL +S + + + +V I + VLNP L + D+ LDL V G++ + Sbjct: 125 QVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVGSEQDI 184 Query: 186 LMVELEA--NQLSEDVVLDAI---------IFGHNECKPV-----IEAISKLAKMCAKEP 229 +M+E+ A ++ +D+ +D I I H EC V ++AI+ AK +E Sbjct: 185 IMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAIAFAAK-AIEEA 243 Query: 230 IVIDSKDFS--------------KLEEEMSQMIKEDLR--VSCFIPE--KYVRCKQIDDL 271 I K+F+ K++EE+ IKE+ V+ I K R ++ + Sbjct: 244 SAIYEKEFTPVMRTPLGLSLAEEKVDEELYAYIKENYSEAVAKAISHMAKSERSTELKKV 303 Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331 + +++ SE ++ + V + + VVR ++LDK +R DGR + VR I+ + + Sbjct: 304 RAQIMEALESEGKEADKELVSKVLDRYKTTVVRDMILDKGIRADGRGLDEVRPITIETNI 363 Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVS 389 L HGS LF RG TQA+V TLG ++D Q + ++ TQ +FM+HYNF + GE Sbjct: 364 LPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNTQSENFMVHYNFPGYSVGEAK 423 Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449 +GAP RRE+GHG LA+RA+ PV+P + T+R+VSE+ ES+GSSSMAT+CG +LAL Sbjct: 424 FIGAPGRRELGHGNLAKRALEPVIP--INYDGTIRLVSEVLESNGSSSMATICGGALALR 481 Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 A V + + VAGIAMGLV DG+ +L+DI G EDH G MDFK+AGT +GITA+QMD+K+ Sbjct: 482 AAEVDMVELVAGIAMGLVTDGERVAVLTDIMGLEDHDGDMDFKIAGTRNGITALQMDIKL 541 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GGI + +AL++A +G+ HIL+ M + +E +++ + P E +I P +I ++IG Sbjct: 542 GGIDLITLKVALEKAAQGKDHILDLMEE--AEKKMESSQALPSTEHFSINPQKIADIIGK 599 Query: 570 GGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP-------EVNK 621 G IR I+E+ +++D D G VK++ ++ AA+E I I + P EV K Sbjct: 600 AGATIRDIIEKFEVSIDLDRDKGGVKLSGHDKEKVAAAKEHIEKIANAPVRKQMQYEVGK 659 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 Y G+V K++DFG FV D L+HIS+++ ERV ++ EGD + V +++ Sbjct: 660 TYVGKVKKIVDFGIFVEMPDGFDALLHISKVAKERVNNLNERYHEGDDITVVVME 714 >gi|170781592|ref|YP_001709924.1| polynucleotide phosphorylase/polyadenylase [Clavibacter michiganensis subsp. sepedonicus] gi|257096675|sp|B0RGW7|PNP_CLAMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169156160|emb|CAQ01301.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 757 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 276/719 (38%), Positives = 413/719 (57%), Gaps = 45/719 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ E GR+A+Q+ GAV A E T++L+ + KD DFFPLT++ +ER+Y Sbjct: 17 KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL+ R+IDR +RP F +NE QV+I V+ + Sbjct: 77 AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 +++ AASA+ MLSG+PF GP+ G ++ I Q+V+ P+ + + D+ V+G Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDAQ 196 Query: 181 -TQD-AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAI--------SKLA 222 +D A++MVE EA + + D++ +A++ G KP I + + A Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQAGATKPDEAVVAQGLEAAKPFIRQLVAAQASLAQQAA 256 Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281 K P+ + S + +S + E+L I +K R D LK + ++ Sbjct: 257 KPTVDYPVFLPYAQQSY--DAVSALALEELGTVYRIADKIERQDADDALKTRTKEAVAAK 314 Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337 E E + ++ + VVR +L +RMDGR +R + A+V ++ R HG Sbjct: 315 VEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGIRMDGRGLADIRPLDAEVQVIPRVHG 374 Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 S++F RG+TQ + V TL + EQ +DSLS + FM HYNF P +TGE R+G+P RR Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRFMTHYNFPPYSTGETGRVGSPKRR 434 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 EIGHG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 435 EIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494 Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513 PVAGIAMGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI Sbjct: 495 PVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIP 554 Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573 +++ AL+QAK R IL +++ + ++ ++ PRV + IP D+I +IG GK Sbjct: 555 TSVLDGALKQAKEARTAILGVLNQAI-DAPDEMAPTAPRVISVNIPVDKIGELIGPKGKT 613 Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVM 631 I I ++TGA ++I++DG V I + EAAR + +I + PEV + + G VVK+ Sbjct: 614 INAIQDETGADISIEEDGAVYIGAVDGPSAEAARAQVNAIANPTNPEVGESFLGTVVKIA 673 Query: 632 DFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAFV +DGL+HIS++ +RV DV+ G + V++ DDRGK+ L+ Sbjct: 674 TFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSLA 732 >gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 725 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 282/722 (39%), Positives = 419/722 (58%), Gaps = 59/722 (8%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 + VE+ + ++A Q++GA G+TV+LATVV D + +DF PLTV Y Sbjct: 3 YNVELTLQNKTEAYAFNQVAAQANGAAWLKCGDTVILATVVIDETDFVDEDFLPLTVQYI 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E++YA GK PGG+++RE++P++ E L SR++DRS+RPLF K + N Q+ + V+ D E+ Sbjct: 63 EKSYAAGKFPGGFIKRETKPSDFETLTSRIVDRSLRPLFPKGFANPVQITVMVLSADREA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183 V+++ AASAAL +S + V +V I+G+ V NP L + Q S LDL+++G+++ Sbjct: 123 DLQVLALNAASAALYVSDIDIFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSKE 182 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE--------AISKLAKMCAKEPIVI--- 232 +LM+E++ E +LD I P+++ A+ + M E I I Sbjct: 183 DMLMIEMQTLGSDEVEILDIGII-----DPLVDPAMSTPSVAVRRSNAMSEDELIRILAS 237 Query: 233 ----DSKDFSKLEEEMSQMIKEDLRVSCFIPE------KYVRCKQIDDLKKKMVSYFSSE 282 S+ S E K + + E +YVR DDLK+ + +E Sbjct: 238 AQIALSEANSAYESAFKSYAKPPFELQTIVSEISGEMIEYVRSVHTDDLKRGINQMAKTE 297 Query: 283 HSS---------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 S+ WNE E+ E ++ +VR +LD+KVR DGR VR IS Sbjct: 298 RSTALRTIRKTILKEKPEWNEHELKKAIESVKRSMVRAQILDEKVRADGRALNEVRPISI 357 Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCAT 385 + +L H S+LF RG TQA+VV+TLG +D Q ++L SGTQ FM+HYNF + Sbjct: 358 ETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGTQNEGFMVHYNFPGFSV 417 Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445 GE S +GAP RRE+GHG LA+RA+ + Q T+R+VSE+ ES+GSSSMATVCG Sbjct: 418 GEPSPIGAPRRRELGHGNLAKRALEGACVRNGQ---TIRLVSEVLESNGSSSMATVCGGY 474 Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505 +AL + ++ P+AG+AMG+V++G IL+DI G EDH G +DFKVAG+ GITAMQM Sbjct: 475 MALRAGDIEVADPIAGVAMGMVQEGSRHAILTDIMGLEDHDGDLDFKVAGSKGGITAMQM 534 Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR 564 D+K+GGI +++ AL QAK R HI++ M + SE +++L E T P ++ I P I Sbjct: 535 DIKLGGIHLDVLKEALYQAKEARSHIIDIM--ISSEDKIELNEGTLPSTDLFHIDPSFIG 592 Query: 565 NVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKI 622 ++IG GK IR I+E+ ++ID G+VK+ + + AR+ I I + V K+ Sbjct: 593 DIIGQAGKTIREIIERFDVTIDIDKKKGSVKLTGKNRDGLRGARDHIEGIVSGATPVEKV 652 Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 KG+V K++DFGAF+ G DGL+HIS+LS V++ SDVV EGD + V+++ Sbjct: 653 EYKVGDVVKGKVKKIVDFGAFIELPGGVDGLIHISKLSDGHVSRVSDVVNEGDELMVEIV 712 Query: 676 DF 677 +F Sbjct: 713 EF 714 >gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus] Length = 834 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 274/744 (36%), Positives = 419/744 (56%), Gaps = 53/744 (7%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V + + GR L ETG++ RQ+ GAV+A GETVV +T DR +F PL V+Y Sbjct: 23 VSVLRVTVGGRDLSFETGKVGRQASGAVMARDGETVVYSTACTDRKTTT-SNFSPLRVDY 81 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 ER A G GGY +R+ R ++ E L+SR++DR +RP + +ETQ++ V+ +D Sbjct: 82 MERFSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTV 141 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLD-EDQGSLDLFVSGT 181 P +++ AASAAL LS +P + G V G+ V+NP + L+L ++GT Sbjct: 142 HPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGT 201 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-- 239 D VLM+E E++ + E+ ++ AI GH + + I + +++ KE D+ Sbjct: 202 ADGVLMIEGESDFVCEEDMMRAIEVGHAAVRDLCLGIEEWSEVAGKEKKT-DTLRLPPEG 260 Query: 240 LEEEMSQMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEI 291 L+E M + ++ + + F ++ +++ L ++ + E + ++ ++ Sbjct: 261 LDEIMERDFQDKVDHALFESGEGKDDQSSAMRELTGLTREALQVAEGEEPGNGRYSTYDV 320 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + + + +K +RT++ + R DGR ++ VR IS + GLL RTHGS LF RGDTQAI Sbjct: 321 ETALKKLYSKRLRTIVKETGRRCDGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIAT 380 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 VTLG Q D ++G F + Y F P GE R+G P RRE+GHG LA +A+ Sbjct: 381 VTLGGSGSSQKTDGITGMILKHFYLQYTFPPSCVGETGRIGGPGRREVGHGALAEKALSY 440 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-- 469 +P FPYT+R+ S ITES GSSSMA+VCG SLA+MDAG+P+S P+AG+AMGL+ D Sbjct: 441 TVPPVNDFPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLDEE 500 Query: 470 ---GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 G++ ++L+DI G ED LG MDFKVAG D GIT Q+D+K G++ ++ AL QAK Sbjct: 501 GGSGEEAVVLTDILGLEDALGTMDFKVAGNDKGITTFQLDIKCAGLTTALLGRALTQAKA 560 Query: 527 GRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK- 584 GRLHIL EM K + R ++ F P IM++ PDQI +IG GGK+IR I+E Sbjct: 561 GRLHILGEMQKAQPDGPRKEISPFVPTATIMSVDPDQIGKIIGPGGKIIRQIIEDFSLDG 620 Query: 585 VNIDDDGTVKIA----SSSLAEIEAAREMIRSIT------------------DVPE---- 618 +++++DG V I+ +S+ + ++ EM++ +T VP Sbjct: 621 MDVEEDGRVMISAFNSTSAASAVKYIEEMLKDVTLRGGGRGGGGGGGGRSSRGVPADFNA 680 Query: 619 ---VNKIYKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 + Y+ +VV + FGAFV F +GLVH+S+L RV + + + VK+ Sbjct: 681 TAIIGTTYRDCEVVSIQPFGAFVEFAPGLEGLVHVSELDVNRVVTAEGFLADKPAIDVKV 740 Query: 675 LDFDDRGKIKLSMKVV--DQNTGK 696 + +D+GK++LS K V D+ GK Sbjct: 741 IGLNDKGKVRLSRKAVLMDERGGK 764 >gi|50954610|ref|YP_061898.1| polynucleotide phosphorylase/polyadenylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|81391079|sp|Q6AFQ2|PNP_LEIXX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|50951092|gb|AAT88793.1| polyribonucleotide nucleotidyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 761 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/731 (38%), Positives = 419/731 (57%), Gaps = 52/731 (7%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGRIA+Q+ GAV A E T++L+ + KD DFFPLTV+ +ER+YA Sbjct: 18 FGARTVRFETGRIAQQAQGAVAAYLDEETMLLSATSASKHPKDNFDFFPLTVDVEERSYA 77 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+ IL+ R+IDR +RP F +NE Q+++ V+ + + Sbjct: 78 AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPDEFYDAL 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDE-DQGSLDLFVSG-- 180 ++ AASA+ +SGLPF GP+ G ++ I G Q+V P+ + ++ DL V G Sbjct: 138 AINAASASTQISGLPFSGPIAGVRLALIPGNGAHEDQWVAFPKASQLEEAVFDLIVVGRV 197 Query: 181 --TQD------AVLMVELEANQLSEDVVLDAIIFGHNE--------CKPVIE----AISK 220 +D A++MVE EA + S +++ + + E KP I A + Sbjct: 198 LTNEDGTEGDVAIMMVEAEATEGSWNLIQGGAVKPNEEVVAQGLEAAKPFIRQLVGAQAA 257 Query: 221 LAKMCAKEPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276 LAK AK + D F +E ++ + ++L I +K R D LK+++ Sbjct: 258 LAKQSAKA--IADYPVFLPYSQETYDSVAALAYDELVNVYQIADKVERQNADDALKERVK 315 Query: 277 SYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVM----LDKKVRMDGRDSETVRDISAQVGL 331 + + + + + E ++ F V + VM L + VR+DGR +R + A+V + Sbjct: 316 AALAEKAQAGALDAEALTQFSAAYKSVSKVVMRGRVLREGVRIDGRGLTDIRPLDAEVQI 375 Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391 + R HGS++F RG+TQ + V TL + EQ +DSLS + ++ HYNF P +TGE R+ Sbjct: 376 IPRVHGSAVFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRYLHHYNFPPYSTGETGRV 435 Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451 G+P RREIGHG LA RA+ PVLP +FPY +R VSE S+GS+SM +VC S+L+L++A Sbjct: 436 GSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNA 495 Query: 452 GVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 GVP+ PVAGIAMGL+ D D + L+DI G ED LG MDFKVAGT +TA+Q+D Sbjct: 496 GVPLRAPVAGIAMGLISDVIDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDT 555 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI +++ AL+QAK R IL+ + + ++ ++ PRV + IP D+I +I Sbjct: 556 KLDGIPSSVLASALKQAKDARTTILSVLDAAI-DAPDEMAPTAPRVISVQIPVDKIGELI 614 Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKG 625 G GK I I ++TGA ++ID+DGTV I + EAAR + I + PEV + + G Sbjct: 615 GPKGKTINAIQDETGADISIDEDGTVYIGAVDGPSAEAARAQVNVIANPTNPEVGEQFLG 674 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRG 681 VVK FGAFV +DGL+HIS++ +RV DV+ G + V++ DDRG Sbjct: 675 TVVKNAAFGAFVSLLPGKDGLLHISEVRKLAGGKRVESVDDVLSIGQKILVEITKIDDRG 734 Query: 682 KIKLSMKVVDQ 692 K+ L+ + D+ Sbjct: 735 KLSLAPVLADE 745 >gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis DSM 7299] Length = 725 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 291/726 (40%), Positives = 426/726 (58%), Gaps = 57/726 (7%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E G+ E ++A+Q++G+VLA G V+LATVV + +DF PLTV Y E+ Sbjct: 6 EFELNGKDEIFEFNKVAKQANGSVLAKCGNAVILATVVSEFDNPGSEDFTPLTVQYIEKA 65 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA KIPGG+ +RES+P+E E L SR+IDRS+RPLF K Y T + + V+ D + Sbjct: 66 YAAAKIPGGFFKRESKPSELETLTSRIIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQ 125 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVL 186 +++ AASAAL S +P + V G ++ I+G+Y++NP + D +LDL+V+G++D +L Sbjct: 126 TLALNAASAALYTSNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDLYVAGSKDELL 185 Query: 187 MVELEANQLSEDVV---LDAI--IFGHNEC--KPVIEAISKLAKMCAKEPIVIDSKDFSK 239 M+E+ A SED+V ++A I NE + ++EAIS +A++ KE F Sbjct: 186 MIEMRAIS-SEDMVEVDIEAFSKIHKTNEMTEEELVEAIS-IAQIALKEANSTYETGFEN 243 Query: 240 LEEEMSQM------IKEDLRV---SCFIPE---------KYVRCKQIDDLKKKMVSYFSS 281 + +E ++ I EDL V + ++ + K R ++ DL KK+ Sbjct: 244 VCKEKHEVELVEFTISEDLIVHVKNTYLHDVKDAVKKLAKSERATELKDLAKKIAK---D 300 Query: 282 EHSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E+ + NE +V+E + + +VVR ++++ VR DGR +TVR IS +L H S Sbjct: 301 EYCTSNEFPFENVYEAVSIVKKEVVRAMIVNDHVRADGRGLKTVRPISIDTNILPSAHSS 360 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396 LF RG+TQA+VV TL +D Q ++L+ T +FM+HYNF + GE M R Sbjct: 361 CLFTRGETQALVVATLAGAKDGQMFETLNEKSTSMENFMVHYNFPGFSVGEAKPMFGVGR 420 Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456 RE+GHG L +RA+ + + F T+R+VSEI ES+GSSSMATVCG SLAL AGVPIS Sbjct: 421 RELGHGNLGKRALEATIDR--DFADTVRLVSEILESNGSSSMATVCGGSLALKAAGVPIS 478 Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 VAG+AMG+V +GD +L+DI G EDH G MDFKVAG +GITA+QMD+K+GGI ++ Sbjct: 479 GLVAGVAMGMVVEGDKHCVLTDIMGLEDHDGDMDFKVAGPKTGITALQMDIKLGGIELSV 538 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + AL QAK GR HIL M + +E + P +E AI P +I VIG G I+ Sbjct: 539 LKEALLQAKEGREHILTLMEEASAE--IIPSPALPLMEQFAIDPSKIMVVIGKAGSTIKE 596 Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK---------IYK-- 624 I+E+ +++D D G VK+A + + A I++I+D K +YK Sbjct: 597 IIEKFSVSIDLDRDSGNVKVAGDNKQNVLDACAHIKTISDNAPSRKQNEKIIFDSLYKEE 656 Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 G V +++DFGAF+ +GL+HIS++S ERV SDV+ GD V +K+L R Sbjct: 657 EVLEGIVERIVDFGAFMKLPKGGEGLLHISKISKERVKNVSDVLSVGDKVELKVLKV-SR 715 Query: 681 GKIKLS 686 +I+L+ Sbjct: 716 DRIELA 721 >gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] Length = 752 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/469 (49%), Positives = 326/469 (69%), Gaps = 2/469 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ E +W +++ETG IARQ+ GAVL +TVVLATVV ++ K GQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179 + E + ++VAASAAL +SGLPF GPV A+V Y +GQY+LNP R LDL V+ Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT+ AVLMVE EA QLSE+V+L A+++GH + + I AI L + K + ++ Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 L ++S++ DL+ + + +K R +++ ++ + + + + E+ ++ ++ Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++K+VR +L+ + R+DGRD+ TVR I + +L R HGS+LF RG+TQA+VV TLGT+ Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 DEQ +D+L G R+ FM+HYN P ATGE R+G+P RREIGHGRLA+RA+ PVLP+ + Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 F YT+R+VSEITES+GSSSMA+VCG LALMDAGVP+ VAG+AMGL+ Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLI 469 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/209 (47%), Positives = 143/209 (68%) Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAGTD+ ITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M + +R +L Sbjct: 521 GDMDFKVAGTDNCITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTEL 580 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+S + A Sbjct: 581 SAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEA 640 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 + I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV + SD VKE Sbjct: 641 KRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKE 700 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G V VKLL D++G+++LS+K G Sbjct: 701 GQLVRVKLLSTDEKGRMRLSIKAAKAEEG 729 >gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase [Nasonia vitripennis] Length = 765 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/705 (36%), Positives = 405/705 (57%), Gaps = 31/705 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + L TG+ AR +DG +AT G+T V+ T V F PL V+Y+++ A G+ Sbjct: 50 GKHMILSTGKYARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLPLVVDYRQKAAAAGR 109 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP + RRE TE+EIL SR+IDRS+RPLF + Y ETQV+ N++ D + P V+S+ Sbjct: 110 IPTNFFRRELGHTEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVLSIN 169 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVEL 190 ASAAL +S +P+ GPV +V I+ + ++NP R + Q SL+L V+ T Q+ V+M+E Sbjct: 170 GASAALAVSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLNLIVTATQQNLVVMLEG 229 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK- 249 A+ + + A+ G EC+ ++++I KL K K ++ ++L EE+ + IK Sbjct: 230 SADNILVPELRKALKAGVKECQIIVQSIQKLQKNFGKPKRTVEPP--AELPEEIVESIKS 287 Query: 250 ---EDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304 + LR S + +K R I++L+ ++++ + HS + G + F + + R Sbjct: 288 LSEKKLRKIFSDYKHDKLSRDNAINNLRNEVLTTVKASHSELDSGLTLEAFSEFSKTLFR 347 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ + R DGR +R+I+ QV L + HGS+LF RG TQ + VTL + + +D Sbjct: 348 SLIFENNCRCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMD 407 Query: 365 SL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 ++ SG + +F +HY F P AT E R G RRE+GHG LA R + +LP+ ++P Sbjct: 408 TMSMLSSGVKEKNFFLHYEFPPYATNETGRTGPVGRREMGHGALAERGLRAILPK--EYP 465 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DF 473 +T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV D D+ Sbjct: 466 FTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYDKDTKHIKDY 525 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+DI G ED+LG MDFK+AGT G+TA+Q D+KI G+ I++ +L+QA + ILN Sbjct: 526 KILTDILGIEDYLGDMDFKIAGTKKGVTALQADIKIPGLPLKIVMESLEQATEAKTQILN 585 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M++ +S+ R P E + +P ++G+GG I+ I QTG +N ++D Sbjct: 586 IMNEAISKPRTDKKNNMPVTETIEVPAHLRGKLLGIGGTNIKKIFLQTGVHINQEEDTKF 645 Query: 594 KIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647 + + + ++ A+E I +T E IY ++V++ D G V + L+ Sbjct: 646 VLFAPNETAMDEAKETINQLTKQEREPTLEFGGIYTAKIVEMKDIGVMVTLYPSMPPALL 705 Query: 648 HISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 H SQL +V S + E G + VK D G ++LS KV+ Sbjct: 706 HNSQLDQRKVNHPSALGFEVGQELQVKYFGRDPASGNMRLSRKVL 750 >gi|148273228|ref|YP_001222789.1| polynucleotide phosphorylase/polyadenylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|187610254|sp|A5CSN9|PNP_CLAM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147831158|emb|CAN02110.1| putative polyribonucleotide nucleotidyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 757 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 276/718 (38%), Positives = 413/718 (57%), Gaps = 43/718 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ E GR+A+Q+ GAV A E T++L+ + KD DFFPLT++ +ER+Y Sbjct: 17 KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL+ R+IDR +RP F +NE QV+I V+ + Sbjct: 77 AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180 +++ AASA+ MLSG+PF GP+ G ++ I Q+V+ P+ + + D+ V+G Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDSE 196 Query: 181 -TQD-AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAI---SKLAKMCAK 227 +D A++MVE EA + + D++ +AI+ G KP I+ + A Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQGGATKPDEAIVAQGLEAAKPFIQQLVAAQASLAQQAA 256 Query: 228 EPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-- 281 +P V D F +E +S + ++L +K R D LK + ++ Sbjct: 257 KPTV-DYPVFLPYAQETYDAVSALALDELGTVYQTADKIERQDADDALKTRTKEAVAAKV 315 Query: 282 ---EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338 E E + ++ + VVR +L VRMDGR +R + A+V ++ R HGS Sbjct: 316 EAGELPQSALTEFSAAYKSVTKTVVRGRILRDGVRMDGRGLADIRPLDAEVQVIPRVHGS 375 Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 ++F RG+TQ + V TL + EQ +DSLS + ++ HYNF P +TGE R+G+P RRE Sbjct: 376 AIFQRGETQILGVTTLNMLKMEQQIDSLSPITKKRYLHHYNFPPYSTGETGRVGSPKRRE 435 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 IGHG LA RA+ PVLP FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ P Sbjct: 436 IGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 495 Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 VAGIAMGLV D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ GI Sbjct: 496 VAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPT 555 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 +++ AL+QAK R IL +++ + + ++ PRV + IP D+I +IG GK I Sbjct: 556 SVLDGALKQAKEARTAILGVLNQAI-DGPDEMAPTAPRVISVNIPVDKIGELIGPKGKTI 614 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVMD 632 I ++TGA ++I++DGTV I + +AAR + +I + PEV + + G VVK+ Sbjct: 615 NAIQDETGADISIEEDGTVYIGAVDGPSADAARAQVNAIANPTNPEVGESFLGTVVKIAT 674 Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAFV +DGL+HIS++ +RV DV+ G + V++ DDRGK+ L+ Sbjct: 675 FGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSLA 732 >gi|11514023|pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI Enzyme Length = 757 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 273/708 (38%), Positives = 402/708 (56%), Gaps = 37/708 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69 + R ++ ETGR+ARQ+ G+ +A + T VL+ ++ KD DFFPLTV+ +ER YA Sbjct: 34 FGTRTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYA 93 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 GKIPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ + + + VV Sbjct: 94 AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLYDVV 153 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183 ++ AASA+ L+GLPF GP+ G +V I GQ+V P E + D V+G +D Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDXVVAGRVLEDGDV 213 Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227 A+ VE EA + + +V D + G + KP I+ + K + Sbjct: 214 AIXXVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273 Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 P+ +D +D + E +S ++ +L + I K R ++D +K E Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 E EI + + + +VR ++ +K R+DGR +R ++A+V + R HGS+LF RG+TQ Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390 Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 + V TL EQ +D+LS R + +YNF P + GE R+G+P RREIGHG LA R Sbjct: 391 ILGVTTLNXLRXEQQLDTLSPVTRKRYXHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 AI PVLP +FPY +R VSE S+GS+S +VC S+ +L++AGVP+ PVAGIA GL+ Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLI 510 Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 +G+ ++ L+DI G ED G DFKVAGT +TA+Q+D K+ GI +++ AL+Q Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDXDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A+ RLHIL+ + + ++ + PR+ + IP D+I VIG + I I E TGA Sbjct: 571 ARDARLHILDVXXEAI-DTPDEXSPNAPRIITVKIPVDKIGEVIGPKRQXINQIQEDTGA 629 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641 ++ I+DDGT+ I ++ EAAR I I + PEV + G VVK FGAFV Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689 Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 +DGL+HISQ+ +RV DV+ G V V++ + D RGK+ L Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737 >gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni] gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni] Length = 769 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/718 (37%), Positives = 415/718 (57%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 +V +VE++++ GR + + +G++AR ++G + G+T V+ T V GQ+F PL V Sbjct: 36 EVPSVEVKFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++ D Sbjct: 96 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMD 155 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V G+ ++NP E Q S LDL VS Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLDLVVSA 215 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T Q+ V+M+E + + +L AI G E + +I+ I +L K + I++ S+ Sbjct: 216 TKQNLVVMLEGKGQVVLLQDLLKAIKQGTREAQFIIQEIERLQKSYGRHKRSIET--ISE 273 Query: 240 LEEEMSQMIK--EDLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 ++EE+ Q ++ ++R+ +K R ++D++ ++ S + I Sbjct: 274 VDEELQQAVRSMSEMRLREIFQDAQHDKISRDNAVNDVRSNVIDKVWSSYPDTEPAVIGE 333 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + + R ++ ++ R DGRD +++R+IS QV + + HGS+LF RG TQ V+ Sbjct: 334 EFNKVSRNIFRDLLFERTKRCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 393 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L + E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA RA Sbjct: 394 LDSPESAMKLDSLAALESGGLKSKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERA 453 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP + +P+T+R+ SE+ ES+GSSSMA+VCG SLAL+DAGVP+S P AG+A+GLV Sbjct: 454 LMPTLP--SDYPFTVRLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVT 511 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED+LG MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 512 RYENNDTKHLQDYRILTDILGIEDYLGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 571 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + IL+ MS+ + E R E P E + + P Q +IG G ++ I + Sbjct: 572 LQKATDAKSKILDIMSEAIREPRKYRKECWPVSETLTVEPQQRSQLIGPSGLHLKRIYLE 631 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGA 635 TG + D+G + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 632 TGTTLTAADEGQFTVFAPSQAAMDEAKELIEGYLVKERVPDLEFGGIYTAKITELRDTGV 691 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 692 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 749 >gi|88855410|ref|ZP_01130074.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium PHSC20C1] gi|88815317|gb|EAR25175.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium PHSC20C1] Length = 749 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 279/719 (38%), Positives = 426/719 (59%), Gaps = 45/719 (6%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R ++ ETGR+A+Q+ GAV A E T++L+ + ++G DFFPLTV+ +ER+Y Sbjct: 17 KFGKRTVRFETGRLAQQAQGAVAAYLDEETMILSATSAGKHPREGFDFFPLTVDVEERSY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A GKIPG + RRE RP+ IL+ R+IDR +RP F + +NE Q++I V+ + Sbjct: 77 AAGKIPGSFFRREGRPSTEAILVCRLIDRPMRPTFVEGLRNEVQIVITVLSIAPDEFYDA 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG---TQD- 183 +S+ AAS + +SGLPF GP+ G ++ IN Q+V P+ + DL V+G T D Sbjct: 137 LSINAASLSTQISGLPFYGPIAGIRLALINDQWVAFPKHSQLADAVFDLTVAGRMVTNDN 196 Query: 184 -----AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAISK----LAKMCA 226 A++MVE EA + S +++ +A++ G KP ++ + K +A A Sbjct: 197 GEEDIAIMMVEAEATENSWELIKAGATKPDEAVVAQGLEASKPFLKQLVKAQLEVANKAA 256 Query: 227 KEPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281 K V + + F ++ +S++ + +LR I +K R D+LK ++ + S Sbjct: 257 KP--VAEFQLFPPYSDQAYNAVSEIAEAELRDVYKIADKIQRQTADDELKARVKAEVQSK 314 Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337 E S+ G + ++ + KV+R +L + +R+DGR +R + A+V ++ R HG Sbjct: 315 VDAEELSADVLGMVGGAYKAVSKKVMRQRVLTEGIRIDGRGLSDIRALDAEVEVIPRVHG 374 Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397 S++F RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P RR Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLAPVTKKRYMHHYNFPPYSTGETGRVGSPKRR 434 Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 EIGHG LA RAI PVLP +FPY +R VSE S+GS+SM +VC S+L+L++AGVP+ Sbjct: 435 EIGHGFLAERAIAPVLPPREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494 Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513 PVAGIAMGL+ D D + L+DI G ED LG MDFKVAGT +TA+Q+D K+ G+ Sbjct: 495 PVAGIAMGLISDEVDGVTRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLAGLP 554 Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573 +++ AL+QAK R IL+ ++ + ++ ++ PRV + IP D+I +IG GK Sbjct: 555 SSVLDGALKQAKEARTAILSVLNAAI-DAPDEMAPTAPRVISVQIPIDKIGELIGPKGKN 613 Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVM 631 I I + TGA ++I+DDGTV I + EAAR + +I + PEV + + G VVK+ Sbjct: 614 INQIQDDTGADISIEDDGTVYIGAVDGPSAEAARAAVNAIANPLNPEVGERFLGTVVKIA 673 Query: 632 DFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 FGAFV +DGL+HIS++ +RV DV+ G + V++ DDRGK+ L+ Sbjct: 674 TFGAFVSLTPGKDGLLHISEVRKLAGGKRVENVEDVLAVGQKIQVEITKIDDRGKLSLA 732 >gi|261878984|ref|ZP_06005411.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM 17361] gi|270334369|gb|EFA45155.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM 17361] Length = 616 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 248/606 (40%), Positives = 365/606 (60%), Gaps = 26/606 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR + +ETG++A+Q+DGA + G TV+LATV + G DF PL V+Y+E+ A G+ Sbjct: 13 GRTISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 PGG+ +RE +P++ EIL SR+IDR++RPLF Y E V + ++ D P ++ Sbjct: 73 FPGGFTKREGKPSDEEILTSRLIDRALRPLFPADYHCEVYVQVMLLSADGVDQPDALAGF 132 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 AASAA+ S +PF+ + +V +NG++V+NP + ++ +DL V T+D ++MVE E Sbjct: 133 AASAAMACSDIPFDYTISEVRVARVNGEFVINPTFQQMEEADMDLMVGATKDNIMMVEGE 192 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQMI 248 ++ E ++ A+ H KP+ +L+K + D+K + E +E+ Q I Sbjct: 193 MKEVQETDLIAALKAAHEAIKPMCVLQEELSK-----ELGTDTKREYEDEVNDDELCQQI 247 Query: 249 KEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI-------VSVFE 296 K++L + EK+ R + D + + + + H+ E E+ +E Sbjct: 248 KDELYQPVYDVNRQALEKHARHEAFDKIFADFIEKYDAAHTDLTEDELEEKHAEAARYYE 307 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D+ +R +LD+ +R+DGR + +R I +V L HGS++F RG+T ++ TLGT Sbjct: 308 DVMRDAMRRCILDEGLRLDGRGTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGT 367 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ VD++ F++HYNF P +TGE RREIGHG LA R I +P+ Sbjct: 368 KLDEKLVDNVLNRGYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGIKDQIPE- 426 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474 FPYT+R+VS+I ES+GSSSMATVC +LALMDAGVP+ KPVAGIAMGL+K+ D + Sbjct: 427 -DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLIKNPGEDKYA 485 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDI GDEDHLG MDFK GT G+TA QMD+K G+S I+ AL QAK R HI+ E Sbjct: 486 ILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKDAREHIMGE 545 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTV 593 M K LSE R ++ PR+ + IP + I VIG GGK+I+ + E TG+ + ID+ DG Sbjct: 546 MMKTLSEPRKEMKPQVPRIVAIEIPKEFIGAVIGPGGKIIQQLQEDTGSTITIDEVDGVG 605 Query: 594 KIASSS 599 K+ S+ Sbjct: 606 KVQVSA 611 >gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] Length = 693 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/687 (37%), Positives = 416/687 (60%), Gaps = 37/687 (5%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +A+Q+ G+VL G TV+LA+V D +G DF PL+V Y E++YA GKIPGG+++RE Sbjct: 20 VAKQASGSVLYERGGTVILASVAIDDKDVEG-DFLPLSVQYIEKSYATGKIPGGFIKREG 78 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 +P E E L SR+IDR++RPLF K Y+ T + + V+ +D ES V ++ AA+ AL+LS Sbjct: 79 KPGEFETLTSRIIDRTLRPLFPKHYRKTTHISVFVLSYDGESDLQVCALNAAANALLLSA 138 Query: 143 LPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQ-----LS 196 PF P ++ I+G +VLNP R + +LDL++SG+ +LM+E++ ++ Sbjct: 139 APFCVPTAAVRIGRIDGVFVLNPSRSELANSALDLYISGSFGDLLMIEMKGGSTKESGIN 198 Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMC----AKEPIVIDSKDFSKLEEEMSQMIKEDL 252 E+ +L+AI K I+ +S L + K P+ + K +EE+ ++K++ Sbjct: 199 EEELLEAITL----AKAHIQELSSLYEQNIAPHKKAPLALPEK-IELFDEEIDTLLKQEY 253 Query: 253 --RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 R + + K R K ++ L +++ + + W+ ++ + +V+R +L Sbjct: 254 FSRTQEILNQMSKSERNKDLESLGEEIYQKYQN-FKPWSLEQVQYTLWQYKKQVMRNQVL 312 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 ++ +R DGR + VR IS + +L HGS LF RG TQ++VV TLG+ D Q ++L+ Sbjct: 313 ERGIRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLND 372 Query: 369 T--QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + Q+ +F HYNF + GE +G+ RRE+GHG LA++A+ + + + TLR+V Sbjct: 373 SIPQKENFTFHYNFPGFSVGEALMIGSVGRRELGHGNLAKKALEDSIIEKDR---TLRLV 429 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEI ES+GSSSMA+VCG SLA+ G+ S VAG+AMGL+K+G ++ +L+DI G EDH Sbjct: 430 SEILESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAVLTDIMGLEDHD 489 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MDFKVAG ++ ITAMQMD+K+GG+ I+ AL QA+ RLHIL +++ E+R ++ Sbjct: 490 GDMDFKVAGNENFITAMQMDIKLGGLELGILKEALYQARDARLHIL----QIMQEARARI 545 Query: 547 ---GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAE 602 + P+VE +PP +I +IG GGK I+ I+E+ G +++D + G VK+ +++ Sbjct: 546 VVNHDIIPKVETFCVPPSKIIEIIGSGGKTIKEIIERFGVSIDLDREKGEVKVFATNAKT 605 Query: 603 IEAAREMIRSITDVPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ + I I N+I+ G V K++DFG FV DGL+HIS+ + ++ K+ Sbjct: 606 LQDCKNYILQIIGSQGYVENEIFLGVVKKIVDFGVFVSLPRGGDGLLHISKFAQDKSKKS 665 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSM 687 SD +EG + K+L F ++GK+ L + Sbjct: 666 SDYFQEGQKISCKILGF-NKGKVDLDL 691 >gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 691 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 235/684 (34%), Positives = 404/684 (59%), Gaps = 22/684 (3%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ + +ETG++A Q++G + G+T ++AT+V + K+G +F PL ++Y+E A GK Sbjct: 15 GQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLIIDYKENYSAGGK 74 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IPGG+++RE RP++ E+L R+IDR +RPLF + + E Q+II ++ +D P ++ + Sbjct: 75 IPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDGLAGL 134 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191 ASAA+ +SG+PF+GPV ++ +++NP + + S ++L + GT++++LM+E E Sbjct: 135 VASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLIIGGTKNSILMIEGE 194 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEA---ISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 ++SE+ ++ I H K I A + K K+ V ++ +F L+ ++ + Sbjct: 195 MKEISENEIIYFIKIAHFFIKLQITAQINLIKNLKIKRNNLPVFNNLNFIYLKNKIKYIF 254 Query: 249 KEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 E ++ C + +R +Q++ L K+ +YF ++ NE E +FE ++ +++R + Sbjct: 255 YE--KIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNYIFEILKKEILREI 312 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L + R+DGR + +R I +Q L HGS++F RG+TQA+ VTLG+ D +D++ Sbjct: 313 ILKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNV 372 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 + F +HYNF P +TGE+ + SRREIGHG LA+RA+ ++P + PYT+R+V Sbjct: 373 ILQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNIIP--FKTPYTIRVV 430 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484 S+I ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+ + D+ IILSDI GDED Sbjct: 431 SDILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTDEAIILSDILGDED 490 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 ++G MDFK+ GT GITA QMD+ G + +++ ++ +AK L ++ ++ + R Sbjct: 491 NIGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFLIKKILNTIQYPRF 550 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLA 601 E +P++ I I VIG GGK+I+ I T + I+++ G ++I + Sbjct: 551 SFKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEENLGIIEIYGKTDK 610 Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +I+ A I+++ P+ K+YK ++ + + + + L Sbjct: 611 QIKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSGQT-----MDLKKSENLNLY 665 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKL 685 +++GD W+K+ + GKI Sbjct: 666 SFLRKGD--WIKIKSVNQNGKINF 687 >gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis] gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis] Length = 770 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/718 (36%), Positives = 410/718 (57%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 DV +VE+ ++ GR + + +G++AR ++G + G+T V+ T V GQ+F PL V Sbjct: 36 DVPSVEVSFSNGRKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++ D Sbjct: 96 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMD 155 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T Q+ V+M+E + N + +L AI G E + +I I +L K ++ +D + + Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKRDVD--ELPE 273 Query: 240 LEEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + E+ Q +K ++R+ +K R +++++ ++ S + + I Sbjct: 274 PQAELVQAVKSMCEMRLREIFQDASHDKISRDTAVNEVRANVIDKVWSSYPDLDPAAIGE 333 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + ++ R ++ + R DGRD +++R I+ QV + + HGS+LF RG TQ V+ Sbjct: 334 EFNNACREIFRELIFESNRRCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVS 393 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L + E +D+L+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 394 LDSPESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERS 453 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV Sbjct: 454 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVT 511 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 512 KYENNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 571 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + IL+ M + + E R + P E + + P Q +IG G ++ I + Sbjct: 572 LQKATDAKSKILDIMGETIREPRKYRKDCWPVSENLVVEPHQRSQLIGPSGLHMKRIYLE 631 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VP--EVNKIYKGQVVKVMDFGA 635 TG + DD + + S A ++ A+EMI VP E IY + ++ D G Sbjct: 632 TGTTLTPSDDSNFTVFAPSQAAMDEAKEMIEGYMHKERVPDLEFGGIYTATITELRDTGV 691 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + G L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 692 MVILYPGMPPALLHNSQLDQRKIAHPSALGLEVGQEIQVKYFGRDPVSGFMRLSRKVL 749 >gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter winghamensis ATCC BAA-430] gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter winghamensis ATCC BAA-430] Length = 736 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 266/717 (37%), Positives = 411/717 (57%), Gaps = 56/717 (7%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +A+Q+ G+V G V+LAT+ D +DF PLTV Y E+ YA GK PGGY++RE+ Sbjct: 20 VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAAGKFPGGYIKREA 79 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 +P + E L +R++DRS+RPLF K Y TQ+ I V+ D ++ ++++ AASAAL S Sbjct: 80 KPGDFETLTARIVDRSLRPLFPKDYCYPTQITIMVLSADNDADLQLLALNAASAALYTSE 139 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE---------- 191 +P V G ++ I ++V+NP L E +Q +LDLFVSG + +LM+E+ Sbjct: 140 IPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDLFVSGVNEDLLMIEMRTFGGVDIQTP 199 Query: 192 -------------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 AN+L+E ++ A+ + + + K C KEP+ + Sbjct: 200 SNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKTHISKKSKLVEEHFKACIKEPLEL 259 Query: 233 DSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--- 285 + + + + + IK+ LR K R ++ K++V ++ + Sbjct: 260 TQARKNYICQSVQEFIKQGYLGGLREILAELSKTERHSRLKAFAKQIVQDYAKSNPQDIE 319 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 + E + + ++R ++L + +R DGR + VR IS + +L + H S LF RG Sbjct: 320 FLEQRVNETLNLQKRAMLRAMILQEGIRADGRGLKEVRPISIETNILPKAHSSVLFTRGQ 379 Query: 346 TQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 TQA+VV TLG D Q + L+ GT + FM+HYNF P + GE +GA RRE+GHG Sbjct: 380 TQALVVCTLGGEMDAQSYELLTDKGTSKERFMVHYNFPPFSVGEAIPIGATGRRELGHGN 439 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA+RA+ + Q T+R+VSEI ES+GSSSMA+VCG SLAL A + + +AG+A Sbjct: 440 LAKRALECSVINGDQ--KTIRLVSEILESNGSSSMASVCGGSLALAAADIECTSLIAGVA 497 Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 MGLV +G+ + +L+DI G EDH G MDFKVAG+ SGITA+QMD+K+GG+S I+ AL Q Sbjct: 498 MGLVCEGEKYAVLTDIMGLEDHDGDMDFKVAGSKSGITALQMDIKLGGLSTEILECALLQ 557 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 AK R HIL M ++ ++ L P + AI P +I VIG GK I+ I+E+ Sbjct: 558 AKEARFHILEIMES--AKEKIVLNTVALPSSQTFAIHPSKIVEVIGQAGKTIKEIIEKFE 615 Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSIT----DVPEVNKIYK------GQVVKVM 631 ++++ D+G VK++ + +++AA+E I IT D P + ++YK G+V KV+ Sbjct: 616 VAIDLNRDNGEVKVSGGNKEKVDAAKEYIIGITSASSDKPSIAELYKVGDVYEGRVKKVV 675 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 DFGAFV DGL+HIS++++ R A+ SD + GD + V++L ++ K++L ++ Sbjct: 676 DFGAFVELPHNYDGLLHISKITSSRGAQASDYLSVGDLLRVEVLSL-NKNKVELGLQ 731 >gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi] gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi] Length = 760 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/718 (36%), Positives = 409/718 (56%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 D TVE++++ GR + L +G++AR ++G + G+T V+ T V GQ+F PL V Sbjct: 29 DAPTVEVQFSNGRNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVV 88 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+++ A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+NETQ++ N++ D Sbjct: 89 DYRQKNAASGRIPMNFMRRELGPSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMD 148 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP ++++ AAS AL +S +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 149 AVHSPDILAINAASMALSVSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSA 208 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T Q+ V+M+E + N + +L AI G E + +I I +L K ++ +D+ + Sbjct: 209 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKSYGRQKRDVDA--LPE 266 Query: 240 LEEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 E E+ Q ++ ++R+ +K R +++++ ++ S + I Sbjct: 267 SEPELVQAVRSMCEMRLREIFQDAQHDKISRDTAVNEVRANVLDKVWSSYPDAEPATIGE 326 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ + R DGRD +++R+I+ QV + + HGS+LF RG TQ V+ Sbjct: 327 EFNKACRSIFRELIFESNRRCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVS 386 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +D+L+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R Sbjct: 387 LDSQESAMKLDTLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERG 446 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI P AG+A+GLV Sbjct: 447 LLPTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVT 504 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 505 KYENEDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 564 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + IL+ M+ + E R E P E +++ P Q +IG G ++ I + Sbjct: 565 LQKATDAKAKILDIMADTIREPRTYRKECWPVSETLSVEPHQRAQLIGPSGLHMKRIYLE 624 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + DD + I + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 625 TGTTLTAADDNSFTIFAPSQAALDEAKELIDGYMLKERVPQLEFGGIYTAKITELRDTGV 684 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 685 MVILYPSMPPALLHNSQLDQRKIAHPSALGLEVGQELQVKYFGRDPVSGFMRLSRKVL 742 >gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] Length = 638 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/586 (43%), Positives = 359/586 (61%), Gaps = 26/586 (4%) Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAV 185 P + +++AASAAL LSG+PF GPVVG V+ + N + E + L+LFV+ T+++V Sbjct: 14 PEIPALIAASAALQLSGIPFSGPVVGVDVNMHGSETTCN-EIRETEDGLELFVACTEESV 72 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDFSKLEEEM 244 +MVE EAN+ SE+ V+ A+ KP+ I++ K + +P+ + + EE+ Sbjct: 73 VMVEAEANEASEEEVVHALSEALKSAKPIFSFINEFVKSVTTVKPVGVLYDN-----EEL 127 Query: 245 SQMIKEDLRVSCFIPEKYVRCKQI-------DDLKKKMVSYFSS-EHSSWNEGEIVSVFE 296 E +R +C + V ++I + L + + F+ E + E EI+ Sbjct: 128 C----EKVRAACNAQLESVYNERISSKEERHNKLNQVYANTFARLEDDGYTESEILFFIR 183 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 ++ ++VR +L++ +R DGR +R IS + L THGS+LF RG TQ++VV TLG+ Sbjct: 184 KLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGS 243 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +DEQ +D + G +R ++HYNFLP A GEV + AP RREIGHGRLA +A+ VLP Sbjct: 244 YQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVKAVLPGK 303 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAGIAMGL+ DG IL Sbjct: 304 EVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGARSAIL 363 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 SDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS + AL QA GRLHIL +M Sbjct: 364 SDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRNALNQALAGRLHILEKME 423 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +++ R L + P++ I D + VIG GGK IRGI T K++ID + V I Sbjct: 424 HAIAKPREGLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSTKIDIDQNNYVYIM 483 Query: 597 S---SSLAEIEAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 + +L E + +M +D ++ ++Y+G++V ++DFG FV ++GLVHI Sbjct: 484 ADTEEALMEAKTRVDMASGTSDSNVSQLKIGELYEGKIVSIVDFGLFVVLPNKQEGLVHI 543 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 S++S RV EG +V V++ D GKIKL+M++ + G Sbjct: 544 SEISRNRVNDIRAEHTEGQSVTVRIKDIGSDGKIKLTMRIDEDRVG 589 >gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] Length = 725 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 265/713 (37%), Positives = 416/713 (58%), Gaps = 53/713 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V+I+ G+ K ++ARQ+D ++ G TV+LAT+ Y+ +DF PL V Y ER Sbjct: 5 VDIKINGKEQKFILNKVARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVER 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIP G+++RE +P + E L +R++DRS+RPLF K + +T + I + D +S Sbjct: 65 AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKNFGYDTIITIMALSADEDSDL 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V +M AA+A + +S LPF V G ++ I+G+ + NP L + ++G +LFV+GT+D + Sbjct: 125 QVAAMNAAAACMYMSSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKGDFNLFVTGTKDEL 184 Query: 186 LMVELEANQLSE-------DVVLDA-------IIFGHNECKP--VIEAISKLAKMCAKEP 229 LM+E + E D++LD I + NE +IE + K + + Sbjct: 185 LMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKAQEKIKEGA 244 Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------ 283 +S + ++E++ + ++++ ++ +I K ++ K ID+L++ + SE Sbjct: 245 ETYESALKNFVKEKIEFVERKEVDLTPYI--KLIKEKYIDELREIIKHLSKSERDYLLKE 302 Query: 284 ------SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333 + NE + I+ ++++ ++VR ++L + +R DGR + +R IS + +L Sbjct: 303 FARKIAKTLNEEDNFEAILKAVKEVKREIVRGMILYEGIRADGRKLDEIRPISIETNVLP 362 Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSRM 391 R HGS LF RG TQA+ V T G D Q +L+ + FM+HYNF A GE R+ Sbjct: 363 RAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEEKLEKFMLHYNFPAFAVGEAVRL 422 Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451 G PSRRE+GHG LA+RAI P+L +F T+R+VSEI ES+GSSSMAT+C SS+AL A Sbjct: 423 GPPSRRELGHGNLAKRAIEPLL--DPEFDETVRVVSEILESNGSSSMATICASSIALKAA 480 Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511 VP+ K AGIAMGLV +G+ + IL+DI G EDH G MDFKVAGT GITAMQMD+K+GG Sbjct: 481 KVPLLKLAAGIAMGLVSEGEKYAILTDIMGLEDHDGDMDFKVAGTWDGITAMQMDIKLGG 540 Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I+ +I+ AL QA+ R IL +M + + + P+ + PD+I ++IG G Sbjct: 541 IALDILKEALYQAREARAFILEKMENAVENIKYN-EDVLPKSLSFKVEPDRIIDIIGTAG 599 Query: 572 KVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT---DVP-----EVNKI 622 K ++ I+ + G +++D + G VKI S +++AA++ I ++ D P E+ I Sbjct: 600 KTVKEIIAKFGITIDLDRETGKVKIFGDSHEQMQAAKDYILNVICKEDTPKIPEFEIGSI 659 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 +G + + + FG FV +GL+HIS+L+ K+ D + GD + VK+L Sbjct: 660 LEGVIKRKVPFGLFVELAPDVEGLLHISKLN----GKSLDDFEIGDKIKVKVL 708 >gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura] gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis] gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura] gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis] Length = 769 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/717 (36%), Positives = 413/717 (57%), Gaps = 32/717 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 +V +VE++++ GR + + +G++AR ++G + G+T V+ T V GQ+F PL V Sbjct: 36 EVPSVEVKFSNGRNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTPGQNFMPLVV 95 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF+K Y+ ETQ++ N++ D Sbjct: 96 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMD 155 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP ++++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 156 AVHSPDILAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237 T Q+ V+M+E + N + +L AI G E + +I+ I +L K ++ ++S + Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIQEIERLQKAYGRKKREVESPNRVD 275 Query: 238 SKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +L+E + M + LR +K R +++++ ++ S + G I F Sbjct: 276 PELQEAVRSMCEMRLREIFQDANHDKISRDNAVNEVRSNVIDKVWSSYPDTEPGVIGEEF 335 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + R ++ ++ R DGRD +T+R+IS QV + + HGS+LF RG TQ V+L Sbjct: 336 NQTCRSIFRELIFERNYRCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 395 Query: 356 TREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 + E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R++ Sbjct: 396 SPESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSLL 455 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467 P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 456 PTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKY 513 Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+K+ GI +++ +LQ Sbjct: 514 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMESLQ 573 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 +A + IL+ M++ + E R + P E +++ P Q +IG G ++ I +TG Sbjct: 574 KATDAKSKILDIMAEAIREPRKYPKDSWPVSETISVEPHQRSQLIGPSGLHMKRIYLETG 633 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRS------ITDVPEVNKIYKGQVVKVMDFGAF 636 A + D+ + + S A ++ A+E+I I D+ E IY +V ++ D G Sbjct: 634 ATLTAADESHFAVFAPSQAAMDEAKELIEGYMVKERIPDL-EFGGIYTAKVTELRDTGVM 692 Query: 637 V-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++ S + E G + VK D G ++LS KV+ Sbjct: 693 VILYPSMPPALLHNSQLDQRKIGHPSALGLEVGQDIQVKYFGRDPVSGFMRLSRKVL 749 >gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis RM3268] gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis RM3268] Length = 704 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 265/706 (37%), Positives = 402/706 (56%), Gaps = 53/706 (7%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 +IE G + ++A+Q+ GA L TVVLATV + + + +DF PLTV Y E+ Sbjct: 4 KIEVNGNTEIFDINKVAKQAAGAALLRVKNTVVLATVAREET-QVQEDFLPLTVQYIEKM 62 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y TQ+++ V+ D E Sbjct: 63 YAAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVYVLSADPEVDLQ 122 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186 VV++ AASAAL LS +P + PV G ++ Y NG ++LNP + S LDL+V+G D +L Sbjct: 123 VVALNAASAALYLSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAGVGDELL 182 Query: 187 MVELEA-----------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKE 228 M+E+ + N+ SED+++DAI F G N + + K + Sbjct: 183 MIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAISAGSNAYEEAFLPLKKPDASLEYK 242 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P I+ +D + + K+ ++ + K R +++ + ++++ + + W++ Sbjct: 243 P-EIEDEDIADF---IDANYKDAVKAAINQMAKSERATELNKIVDQILATEVAAQNEWSK 298 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 I SV + ++RT +++ + R DGR + VR IS + +L HGS LF RG TQA Sbjct: 299 EVISSVIGKYKRGIIRTQIIEDRRRADGRALDEVRPISIETNILPCAHGSCLFTRGQTQA 358 Query: 349 IVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 +VV TLG D Q DSL+ + FM +YNF GE S + +P RRE+GHG LA+ Sbjct: 359 LVVTTLGGDSDAQLSDSLTQLEPISERFMFNYNFPGFCVGEASPLKSPGRRELGHGNLAK 418 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 RA++P + + P ++R+VSEI ES+GSSSMA+VCG +L+L AGVP K VAG+AMGL Sbjct: 419 RALYPSINLNS--PQSIRVVSEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGL 476 Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + +G+ +L+DI G EDH G MDFKVAGT GITA+QMD+K+GGIS ++ AL QA++ Sbjct: 477 IFEGEKHAVLTDIMGLEDHDGDMDFKVAGTYEGITALQMDIKLGGISLEVLKEALAQARQ 536 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R HIL M + + + + P++EI + +I ++IG GGKVI+ I E G ++ Sbjct: 537 ARAHILGLMEQADAAIVINR-DVLPKLEIFNVEASKIPDIIGQGGKVIKEITESFGVNID 595 Query: 587 ID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------EVNKIYKGQVVKV 630 +D + G VKI + + + A+E I SI ++ + + G V V Sbjct: 596 LDREKGEVKIQGAKASGVSGAKEKILSIVSNSRDFRKPRGERKEVKFQIGEEFDGVVQSV 655 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 +DFG F+ DGL+ ++T K GD V V++ D Sbjct: 656 LDFGTFISLRDGVDGLLRAKFITTP--------YKAGDVVRVRVTD 693 >gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae] gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae] Length = 771 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/713 (36%), Positives = 406/713 (56%), Gaps = 30/713 (4%) Query: 6 TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +VE+ ++ GR + +GR+AR ++G+ + G+T V+ T V GQ F PL V+Y+ Sbjct: 41 SVEVNFSNGRNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTPGQGFMPLVVDYR 100 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + A G+IP ++RRE P+E EIL +R+IDRS+RPLFSK Y+ ETQ++ N++ D Sbjct: 101 LKNAASGRIPMNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVH 160 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS T Q Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSATKQ 220 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KL 240 + V+M+E + N + + +L AI G E + +I I +L K ++ +++ + +L Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEAPTATDPEL 280 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E+ + M + LR +K R +++++ ++ S +I +F Sbjct: 281 EQAVRSMCEMRLREIFQDAHHDKISRDNAVNEVRSNVIDKVWSSFPDTEPSQIGELFNQT 340 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 ++ R ++ +++ R DGR + +R+IS QV L + HGS+LF RG TQ V+L + E Sbjct: 341 SREIFRELIFEREQRCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPE 400 Query: 359 DEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R + P L Sbjct: 401 SAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERGLLPTL 460 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467 P +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV Sbjct: 461 PH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYEND 518 Query: 468 --KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ +LQ+A Sbjct: 519 DTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKAT 578 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL+ M + + E R + P E + + P Q +IG G ++ I +TGA + Sbjct: 579 DAKSKILDIMGEAIREPRKYRKDSWPVSETLTVEPHQRAQLIGPSGLHMKRIYLETGATL 638 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HF 639 D+ + + S A ++ A+E+I VP E IY ++ ++ D G V + Sbjct: 639 TAADESNFSVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILY 698 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 699 PSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans] gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans] Length = 771 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/715 (36%), Positives = 404/715 (56%), Gaps = 34/715 (4%) Query: 6 TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V+Y+ Sbjct: 41 SVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYR 100 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 101 LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 160 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS T Q Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQ 220 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDF 237 + V+M+E + N + + +L AI G E + +I I +L K ++ ++ + Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPEL 280 Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 K M +M ++E + S +K R +++++ ++ S I F Sbjct: 281 GKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFN 338 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+L + Sbjct: 339 QTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDS 398 Query: 357 REDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R++ P Sbjct: 399 QESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLP 458 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467 LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 459 TLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE 516 Query: 468 ----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 K +D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ +LQ+ Sbjct: 517 NDDTKHLEDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQK 576 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A + IL+ MS+ + E R E P E + + P Q +IG G ++ I +TG Sbjct: 577 ATDAKSKILDIMSEAIREPRKYRKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGT 636 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV- 637 + D+ + + S A ++ A+E+I VP E IY ++ ++ D G V Sbjct: 637 SLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVI 696 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 697 LYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster] Length = 771 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V Sbjct: 38 EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 98 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ ++ Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + K M +M ++E + S +K R +++++ ++ S I Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 335 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+ Sbjct: 336 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 396 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 455 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 456 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 573 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + +IL+ MS+ + E R E P E + + P Q +IG G ++ I + Sbjct: 574 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + D+ + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 634 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSTLNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster] gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster] gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster] gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster] gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster] gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster] Length = 771 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V Sbjct: 38 EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 98 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ ++ Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + K M +M ++E + S +K R +++++ ++ S I Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 335 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+ Sbjct: 336 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 396 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 455 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 456 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 573 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + +IL+ MS+ + E R E P E + + P Q +IG G ++ I + Sbjct: 574 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + D+ + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 634 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis] gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis] Length = 769 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 262/717 (36%), Positives = 407/717 (56%), Gaps = 34/717 (4%) Query: 4 VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 V VE+ ++ GR + + +G++AR ++G + G+T V+ T V GQ+F PL V+ Sbjct: 36 VPAVEVSFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVVD 95 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++ D Sbjct: 96 YRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDA 155 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS T Sbjct: 156 VHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLDLVVSAT 215 Query: 182 -QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 Q+ V+M+E + N + +L AI G E + +I I +L K + +D+ + Sbjct: 216 KQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRHKREVDA--LPEA 273 Query: 241 EEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 E+ Q +K ++R+ +K R +++++ ++ S + + I Sbjct: 274 NSELVQAVKSMCEMRLREIFQDAQHDKISRDTAVNEVRSNVIDKVWSSYPDTDPAAIGEE 333 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F + R ++ + R DGRD +++R+IS QV + + HGS+LF RG TQ V+L Sbjct: 334 FNKACRDIFRELIFESNRRCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSL 393 Query: 355 GTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + E +D+L+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R++ Sbjct: 394 DSPESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSL 453 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467 P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV Sbjct: 454 LPTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTK 511 Query: 468 ------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ +L Sbjct: 512 YENNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESL 571 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 Q+A + IL+ M + + E R + P E +A+ P Q +IG G ++ I +T Sbjct: 572 QKATDAKSKILDIMGESIKEPRKYRKDCWPVSERLAVEPHQRAQLIGPSGLHMKRIYLET 631 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VP--EVNKIYKGQVVKVMDFGAF 636 G + DD T + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 632 GTTLTAADDSTFTVFAPSQAALDEAKELIDGYMHKERVPDLEFGGIYTAKITELRDTGVM 691 Query: 637 VH-FCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E D + VK D G ++LS KV+ Sbjct: 692 VTLYPSMPPALLHNSQLDQRKIAHPSALGLEVDQEIQVKYFGRDPVSGFMRLSRKVL 748 >gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group] Length = 1030 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 266/751 (35%), Positives = 419/751 (55%), Gaps = 75/751 (9%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E E GR + ETG++AR ++G+V+ + +T VL+TV +S + +DF PLTV+YQE+ Sbjct: 64 EFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 123 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G IP Y+RRE P E E+L R+IDR IRPLF + +E Q+++NV+ D + P Sbjct: 124 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPD 183 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 V++ A+SAALMLS +P+ GP+ +V I+G +VLNP +DE L+L + ++D L Sbjct: 184 VMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTL 243 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241 M++++A +++E + + H E I +LAK K+ +I K + K+ Sbjct: 244 MIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIR 303 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I+E S + K+ R + ++++ + + + E + + + ++ + Sbjct: 304 TLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQ 361 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V+R +++K +R+DGR + VR + + HGS+LF RGDTQ + VTLG D Q Sbjct: 362 VIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQ 421 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLA--------------- 405 +DS+ G FM+HY+F P + EV++ G +RRE+GH RL Sbjct: 422 RLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTDGLHGPIRL 481 Query: 406 ---------RRAIHP-----------------------------VLPQTAQFPYTLRIVS 427 +A+ P VLP +FPYT+R+ S Sbjct: 482 GDELRVWIEHKALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNS 541 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDIS 480 E+ SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D + IL+DI Sbjct: 542 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTGDISSYRILTDIL 601 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ +L+ A++ R IL+ M + +S Sbjct: 602 GLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEIS 661 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 +R +PR+ ++ D +R ++ K I ++TGA+V++ DGTV I + + Sbjct: 662 SARAFNDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV-SDGTVTIVAKTQ 716 Query: 601 AEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 ++ A E + + EV K YKG V + ++GAFV F G + GL+HIS+LS ++V+K Sbjct: 717 PIMDKAIEKVEFLVGREIEVGKTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSK 776 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 SDVV G + + + D RG IKLS+K Sbjct: 777 VSDVVSVGQVLSLTCIGQDLRGNIKLSLKAT 807 >gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba] gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba] Length = 771 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/715 (36%), Positives = 403/715 (56%), Gaps = 34/715 (4%) Query: 6 TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V+Y+ Sbjct: 41 SVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYR 100 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 101 LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 160 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS T Q Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSATKQ 220 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDF 237 + V+M+E + N + + +L AI G E + +I I +L K ++ ++ + Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVTADVDPEL 280 Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 K M +M ++E + S +K R +++++ ++ S I F Sbjct: 281 GKAVRSMCEMRLREIFQDSTH--DKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQFN 338 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+L + Sbjct: 339 QTSRAIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDS 398 Query: 357 REDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 +E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R++ P Sbjct: 399 QESAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLP 458 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467 LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 459 TLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE 516 Query: 468 ----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ +LQ+ Sbjct: 517 NDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQK 576 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A + IL+ MS+ + E R + P E + + P Q +IG G ++ I +TG Sbjct: 577 ATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGT 636 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV- 637 + D+ + + S A ++ A+E+I VP E IY ++ ++ D G V Sbjct: 637 SLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVI 696 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 697 LYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta] gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta] Length = 771 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V Sbjct: 38 EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKSKPNPGQGFMPLVV 97 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 98 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 158 AVHSPDVLAINAASVALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ ++ Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + K M +M ++E + S +K R +++++ ++ S I Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAE 335 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+ Sbjct: 336 QFNQTCRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 396 LDSQESAMKLDSLTALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERS 455 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP ++P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 456 LLPTLPN--EYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+K+ GI +++ + Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMES 573 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + IL+ MS+ + E R + P E + + P Q +IG G ++ I + Sbjct: 574 LQKATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + D+ I + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 634 TGTSLTAVDETHFSIFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751 >gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group] Length = 941 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/725 (35%), Positives = 410/725 (56%), Gaps = 64/725 (8%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +AR ++G+V+ + +T VL+TV +S + +DF PLTV+YQE+ YA G IP Y+RRE Sbjct: 1 MARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQYAQGVIPTTYMRREG 60 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 P E E+L R+IDR IRPLF + +E Q+++NV+ D + P V++ A+SAALMLS Sbjct: 61 APKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPDVMAANASSAALMLSD 120 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201 +P+ GP+ +V I+G +VLNP +DE L+L + ++D LM++++A +++E + Sbjct: 121 IPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTLMIDVQAREITERDLQ 180 Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMSQMIKEDLRVSC 256 + H E I +LAK K+ +I K + K+ I+E S Sbjct: 181 AGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIRTLSEAPIEEVFTDST 240 Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316 + K+ R + ++++ + + + E + + + ++ +V+R +++K +R+DG Sbjct: 241 Y--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQVIRKRIIEKGLRVDG 298 Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376 R + VR + + HGS+LF RGDTQ + VTLG D Q +DS+ G FM+ Sbjct: 299 RQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFML 358 Query: 377 HYNFLPCATGEVSRMGAPSRREIGH----------------------------------- 401 HY+F P + EV++ G +RRE+GH Sbjct: 359 HYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLTNRLVF 418 Query: 402 --------GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453 G LA +A+ VLP +FPYT+R+ SE+ SDGS+SMA+VCG S+ALMDAG+ Sbjct: 419 WERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGI 478 Query: 454 PISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 P+ + VAG+++GLV + D + IL+DI G EDHLG MDFK+AGT GITA+Q+D Sbjct: 479 PVREHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLD 538 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 +K GI +I+ +L+ A++ R IL+ M + +S +R +PR+ ++ D +R + Sbjct: 539 IKPAGIPLDIICESLEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKL 598 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKG 625 + K I ++TGA+V++ DGTV I + + ++ A E + + EV + YKG Sbjct: 599 LFHRKK----IEQETGARVSV-SDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKG 653 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V + ++GAFV F G + GL+HIS+LS ++V+K SDVV G + + + D RG IKL Sbjct: 654 VVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKL 713 Query: 686 SMKVV 690 S+K Sbjct: 714 SLKAT 718 >gi|332141240|ref|YP_004426978.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551262|gb|AEA97980.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep ecotype'] Length = 382 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 267/367 (72%) Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 +R + G+L RTHGS+LF RG+TQAI+ TLGT D Q +D L G + + FM+HYNF Sbjct: 2 IRALDVATGILPRTHGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61 Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441 P GE +G+P RREIGHGRLA+R I V+P +FPY +R+VSEITES+GSSSMA+V Sbjct: 62 PYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMASV 121 Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501 CG+SLALMDAGVPI VAGIAMGLVK D+F++LSDI GDEDHLG MDFKVAGT GIT Sbjct: 122 CGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVAGTTDGIT 181 Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561 A+QMD+KI GI++ IM +AL+QAK RLHILN M + + R +L EF PR+ M I D Sbjct: 182 ALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHREELSEFAPRIYTMKIDQD 241 Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621 +IR+VIG GG +IR I E++ + I+DDGT+KI ++ A+ + A I +T EV K Sbjct: 242 KIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERAKADIAIGKIEQVTAEIEVGK 301 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 Y G++ +++DFGAFV ++GLVHISQ++ ERV K +D +KEG+ V VK+++ D + Sbjct: 302 TYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVTDYLKEGEMVDVKVMEIDRQN 361 Query: 682 KIKLSMK 688 +++LS+K Sbjct: 362 RVRLSIK 368 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66 R L + TG + R + G+ L T GET ++ AT+ +R + G+ ++Y Sbjct: 3 RALDVATGILPR-THGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES-- 124 Y VG+ G + P EI R+ R I+ + + E ++ V+ ES Sbjct: 62 PYCVGET--GMI---GSPKRREIGHGRLAKRGIQAVMPS--EEEFPYVVRVVSEITESNG 114 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ---YVLNPRL-DEDQ-GSLDLFVS 179 S + S+ S ALM +G+P + V G + + VL+ L DED G +D V+ Sbjct: 115 SSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVA 174 Query: 180 GTQDAVLMVELE 191 GT D + ++++ Sbjct: 175 GTTDGITALQMD 186 >gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster] Length = 720 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/704 (36%), Positives = 396/704 (56%), Gaps = 33/704 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + +GR+AR ++G + G+T V+ T V GQ F PL V+Y+ + A G+IP Sbjct: 1 MTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRIPM 60 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D SP V+++ AAS Sbjct: 61 NFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAAS 120 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEAN 193 AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS T Q+ V+M+E + N Sbjct: 121 MALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEGKGN 180 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDFSKLEEEMSQM- 247 + + +L AI G E + +I I +L K ++ ++ + K M +M Sbjct: 181 VVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMR 240 Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 ++E + S +K R +++++ ++ S I F + R ++ Sbjct: 241 LREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELI 298 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367 ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+L ++E +DSL+ Sbjct: 299 FERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLA 358 Query: 368 -----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 G + +FM+HY F P ATGEV R+G RRE+GHG LA R++ P LP +P+T Sbjct: 359 ALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPTLPN--DYPFT 416 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFI 474 +R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV K D+ Sbjct: 417 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYR 476 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ +LQ+A + +IL+ Sbjct: 477 ILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDI 536 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 MS+ + E R E P E + + P Q +IG G ++ I +TG + D+ Sbjct: 537 MSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFN 596 Query: 595 IASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HFCGARDGLVH 648 + + S A ++ A+E+I VP E IY ++ ++ D G V + L+H Sbjct: 597 VFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLH 656 Query: 649 ISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 657 NSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 700 >gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi DSM 13479] gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi DSM 13479] Length = 551 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/560 (40%), Positives = 346/560 (61%), Gaps = 21/560 (3%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF +++E+ AGR L +E GR+A+Q+ GA L YG+TVVL+T ++G DFFPL+ Sbjct: 1 MFKSYSMEL--AGRTLTVEVGRVAKQASGAALMHYGDTVVLSTATASDKPREGIDFFPLS 58 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+ + VM Sbjct: 59 VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ ++ A +S +PF+GP Q+ ++G+ V+NP + Q S + L V+ Sbjct: 119 DQDCSPELTAMLGSAIATCISDIPFDGPCATTQIGMVDGELVVNPTQAQKQASDMALTVA 178 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T++ V+M+E AN++ ED++++AI H+ + VI+ I + C K S Sbjct: 179 STREKVIMIEAGANEVPEDIMIEAIFKAHSVNQEVIKFIDTIVAECGKPK---HSYISCA 235 Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292 + EE+ IKE ++ V+ F +K R + I + K+ F ++ W GE V Sbjct: 236 VPEELFAAIKEIVPPAEMEVAVFTDDKQTREENIRTITAKLEEAF-ADKEEWLAVLGEAV 294 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + Q K VR ++L R DGR + +R ++A++ +L R HGS++F RG TQ + + Sbjct: 295 YQY---QKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQILNIC 351 Query: 353 TLGTREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 TL + Q +D + + + +M HYNF + GE P RREIGHG LA RA+ P Sbjct: 352 TLAPLSESQRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIP 411 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469 VLP +FPY +R VSE ES+GS+S A++C SS++LM AGVPI VAGI+ GLV Sbjct: 412 VLPSEEEFPYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKSAVAGISCGLVTGDT 471 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 DD+I+L+DI G ED G MDFKV GT GITA+QMD+KI G++ I+ A+++ + R+ Sbjct: 472 DDDYIVLTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRRTREARI 531 Query: 530 HILNE-MSKVLSESRLQLGE 548 +IL+E M+K ++E R ++G+ Sbjct: 532 YILDEVMAKAIAEPRKEVGK 551 >gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 762 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 401/711 (56%), Gaps = 32/711 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 +KL G+ AR SDG +AT G+T V+AT V + +F PLTV+Y+++ A G+IP Sbjct: 45 IKLSGGKYARLSDGCAVATLGDTSVMATTVSKSTKSS-SNFLPLTVDYRQKAAAAGRIPT 103 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 YLRRE +E+EIL SR+IDRS+RPLF Y +TQ++ N++ D + P ++S+ AAS Sbjct: 104 NYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIMCNLLAVDGINHPDILSINAAS 163 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDL-FVSGTQDAVLMVELEAN 193 AL LS +P+ GPV +V + V NP R + L+L VS ++ V+M+E AN Sbjct: 164 TALALSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELNLVVVSAAKNLVIMLEGSAN 223 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF----SKLEEEMSQMIK 249 + + VL AI FG EC+ ++ I L K K ++K+ LE + + Sbjct: 224 NVLQQDVLKAIKFGVKECQHIVNCIDNLQKEFGKPKREFETKNIDDTNGNLETVIDSFCE 283 Query: 250 EDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307 LR + K R + D+K +++ S + N +F+ + ++ R ++ Sbjct: 284 IKLREIFTNVNHHKISRDIAVKDVKTEVIENLKSNFDNLNLELCSIIFDKVCKRIFRNLI 343 Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL- 366 + R DGR + +R+IS +V L + HGS+LF RG TQ V L + + +D + Sbjct: 344 FENDTRCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSIDSALKLDPMT 403 Query: 367 ---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 SG +F +HY F P AT ++ RMG RREIGHG LA R + ++P+ FP+T+ Sbjct: 404 ILTSGINEKNFFLHYEFPPYATNDIGRMGPSMRREIGHGALAERGLRSIVPE--NFPFTI 461 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFII 475 R+ SE+ ES+GSSSMA++CG SLALMDAGVPIS+P AG+A+GL+ + D D+ I Sbjct: 462 RLTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDNDSKHIKDYRI 521 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 L+DI G ED+LG MDFK+AGT GITA+Q D+KI G+ I++ A++ A + I+N M Sbjct: 522 LTDILGIEDYLGDMDFKLAGTKKGITALQADIKIPGLPLKIVMEAVEAATSAKHKIINIM 581 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTV 593 + + +R Q + P EI+ +P + ++G GG ++ I+ +TGA++ N ++DG Sbjct: 582 NATIQSTRKQKKDNWPVTEILNVPIHKKGKLLGPGGINLKRIMLETGAQISSNSENDGFT 641 Query: 594 KIASSSLAEIEAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648 A + A EA + + + + E IYK +VV++ + G V + + LVH Sbjct: 642 IFAPNQDALDEAKETVDKLMAEKSEPQLEFGAIYKAKVVEIREIGVMVTLYPSMQPTLVH 701 Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697 SQL +++ S + ++EG + +K D G ++LS KV+ + P Sbjct: 702 NSQLDQRKISHPSALGLEEGHEIQIKYFGRDPVSGMMRLSRKVLQGPSSSP 752 >gi|328784963|ref|XP_396984.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Apis mellifera] Length = 747 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/705 (35%), Positives = 396/705 (56%), Gaps = 55/705 (7%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G +KL TG+ AR + G+V+AT G+T ++ TVV + L + PLTVNY+++ A+G+ Sbjct: 50 GSEIKLSTGKYARFTSGSVIATVGDTSIMTTVVRNNVLSNNS-IIPLTVNYRQKAAAIGR 108 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP + RRE T+NEIL+SR+IDRS+RPLF Y ETQ++ N++ D ++P V+S+ Sbjct: 109 IPTNFFRRELGYTDNEILVSRIIDRSLRPLFQPKYSYETQIVCNLLAIDGINNPDVLSIN 168 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-TQDAVLMVEL 190 AASAAL +S +P+ GPV ++ I+ Y++NP E Q L+L +S +++ ++M+E Sbjct: 169 AASAALSISDIPWNGPVAAVRIGLIDNTYIINPSKRELQQSKLNLVLSCISKNLIVMIEG 228 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMSQMI 248 AN + E + AI G EC+ +I +IS+L K K + I S D S +EE + + + Sbjct: 229 SANDILEPELRKAIKLGIKECQTIINSISELQKQIGKPKLNIVSDDESNNDVEEFVREFV 288 Query: 249 KEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 +LR + +K R I DL+ +M+ + S + E + +F +I ++ R++ Sbjct: 289 SNELREIFNYHFHDKISRDNAIFDLRNRMLEKIKNHDSKYIENAL-KIFSNISKEIFRSL 347 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + + + R DGR +R+IS QV L Q HGS+ F RG TQ + VTL + E +D++ Sbjct: 348 IFETEKRCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTI 407 Query: 367 ----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 SG + +F +HY F P A E ++ RREIGHG LA + + V+PQ +P+ Sbjct: 408 SMLSSGIKEKNFFLHYEFPPYAINETGKLTGIDRREIGHGALAEKGLQAVIPQ--NYPFA 465 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--------DDFI 474 +R+ SE+ ES+GSSSMA++CG SLALM+AG+PIS PVAG+AMGLV + D+ Sbjct: 466 IRLTSEVLESNGSSSMASICGGSLALMNAGIPISSPVAGVAMGLVCNNTNTADLKETDYK 525 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DISG EDHLG MDFK+AGT G TA Q D+K+ GI ++ + K Sbjct: 526 ILTDISGIEDHLGDMDFKIAGTKRGFTAFQADIKVPGIPFKVITKTTNKKKN-------- 577 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 P ++ + +P Q R+ +G+GG ++ I+ +TG + +D Sbjct: 578 ---------------KPVLDTIEVPIHQRRHFLGIGGLNLKKILHETGVNIYSVNDTVFS 622 Query: 595 IASSSLAEIEAAREMIRSITDV---PEV--NKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648 I + + ++ A+ MI I + P + IY ++ ++ + G V + L+ Sbjct: 623 IFAPNQNAMDEAKYMINKILETEVEPTLIFGDIYTAKITEIREIGVMVTLYPTMMPTLLP 682 Query: 649 ISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 SQL ++ DV + GD + VK D G+I+LS K++ Sbjct: 683 NSQLDQRKIHH-PDVLGLNVGDEIKVKYFGRDPVNGRIRLSRKIL 726 >gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 785 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 401/713 (56%), Gaps = 31/713 (4%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 TV ++ GR L++ +GR+AR +DG + GET V+ T V Q F PL V+Y+ Sbjct: 45 RTVTVDLGGRKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQ-FMPLVVDYK 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP +LRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNHLRREFGSSDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183 P V+++ ASAAL LS +P+ GP+ ++ I+G+Y++NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASAALSLSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTLNLVVAGAPN 223 Query: 184 A-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++M+E A + + AI G + +I+ I KL K + K FS E Sbjct: 224 SQIVMLEAAAENVLQQDFCHAIKVGMKHNQQIIQGIQKLMKESGRVKRT-PQKLFSAPPE 282 Query: 243 EMSQMIKEDLR-----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + + K + + + +K R I+ ++ + + + EI+ F Sbjct: 283 MVKFVNKHAMERIYAVFTDYNHDKVSRDDAINKIRLDIEELIKEKFPEADPYEIIESFNV 342 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + V R+++L++ R DGRD ++RDIS +V + + HGS+LF RG TQ + VT + Sbjct: 343 VSKDVFRSIVLNEYRRCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDSL 402 Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 E D ++SG + +FM+HY F P AT E ++ +RRE+GHG LA ++++PV+ Sbjct: 403 ESSLKSDPITTAISGIKEKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKSLYPVI 462 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467 P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GL+ Sbjct: 463 PK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSSN 520 Query: 468 KDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 K+G +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA Sbjct: 521 KEGEIEDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQAT 580 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + QTG V Sbjct: 581 AAKREILQIMNKTISKPRESRKENGPVVETVQVPLTKRAKFVGPGGYNLKRLQAQTGVTV 640 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639 N D+ T + + + + + ARE I I E +Y + ++ D G + + Sbjct: 641 NQVDEETFSVFAPTPSAMNEAREFITEICKDDQEHQLEFGAVYTATITEIRDTGVMIKLY 700 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL +V S + E G + VK D G+++LS KV+ Sbjct: 701 PNMTAVLLHNSQLDQRKVKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 753 >gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta] Length = 692 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/669 (36%), Positives = 386/669 (57%), Gaps = 30/669 (4%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 F PL V+Y+++ A G+IP +LRRE P+E+EIL SR+IDRSIRPLF + + TQ++ Sbjct: 15 FLPLVVDYRQKAAAAGRIPTNFLRRELGPSEHEILTSRVIDRSIRPLFPEGFYFNTQIMC 74 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-L 174 N++ D + P V+++ ASAAL +S +P+ GPV ++ I+ + ++NP + Q S L Sbjct: 75 NMLAIDGMNDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNEIIVNPTRRQIQDSIL 134 Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 +L ++ Q+ ++M+E AN++ E + AI G EC+ ++ AI+ L K C K V++ Sbjct: 135 NLIITAAKQNLIIMLEGSANEILEQQLRKAIKLGVKECQSIVAAITNLQKTCGKTKRVLE 194 Query: 234 SKD------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287 + + + E+S+ +D+ S +K R ++DL+ ++ ++++ + Sbjct: 195 TSEQQQDDSLNSSVRELSEAKLQDI-FSNHTHDKISRDNAVNDLRNNVIEILRNDNADLD 253 Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 S+F + V RT++L+K VR DGR + +RDIS QV L HGS+LF RG TQ Sbjct: 254 VKLAESIFGKVVKDVFRTLILEKGVRCDGRPMDGIRDISCQVDLFNPLHGSALFQRGQTQ 313 Query: 348 AIVVVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 + VTL + + +D+ +SG + +F +HY F P AT E RRE+GHG Sbjct: 314 VMCAVTLDSLQSALKMDTISMLISGMKEKNFFLHYEFPPYATNETGHASRAGRRELGHGA 373 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +A+ PVLP+ +P+T+R+ SE+ ES+GSSSMATVCG SLAL+DAG+PIS P AG+A Sbjct: 374 LAEKALRPVLPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALLDAGIPISSPTAGVA 431 Query: 464 MGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 +GLV + ++ IL+DI G ED+LG MDFK+AGT G TA+Q D+KI G+ I Sbjct: 432 IGLVTKCNETNTNIENYKILTDILGIEDYLGDMDFKIAGTKRGFTALQADIKISGVPLKI 491 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 ++ +QQA +L I+ M+ V+ E R + P V+ + +P Q +G+GG ++ Sbjct: 492 IMECIQQATNAKLQIIKTMNTVIREPRQTRKDKMPVVDNLEVPIHQRGKFLGIGGMNLKK 551 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVM 631 I+ +TG + D+ T I + + + A+EMI ++ + E IY ++V++ Sbjct: 552 ILLETGVHIYPHDENTYSIFAPNEDAMTEAKEMIENVLQKDREPILEFGAIYTAKIVEIR 611 Query: 632 DFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMK 688 + G V + L+ SQL ++ S + E G + VK D G+I++S K Sbjct: 612 ETGVMVTLYNNMIPTLLPNSQLDQRKILHPSALSLEVGQDIQVKYFGRDPVSGQIRISRK 671 Query: 689 VVDQNTGKP 697 V+ + T P Sbjct: 672 VLQKPTLTP 680 >gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] Length = 729 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 266/687 (38%), Positives = 396/687 (57%), Gaps = 62/687 (9%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQE 65 +EI G G++ARQ+DG+VL G+T++LATVV D+++ + F PLTV Y E Sbjct: 6 IEITSNGLQESFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVH--EPFLPLTVQYIE 63 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA KIPGG+++RES+P++ E L SR+IDRS+RPLF + + T + + V+ D E Sbjct: 64 KAYAAAKIPGGFVKRESKPSDFETLTSRIIDRSLRPLFPEDFAYPTVITVLVLSADSEVD 123 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184 V ++ AA+AAL++S LP E V ++ I+G+ LNP L ++ +LDL + G+ + Sbjct: 124 LQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESALDLLLVGSGEE 183 Query: 185 VLMVEL------------------------------EANQLSEDVVLDAIIFGHNE---- 210 +LM+E+ E+N+L E+ ++ I E Sbjct: 184 LLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALIGEARGEIAEA 243 Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL--RVSCFIP--EKYVRCK 266 C+ EA+ + P VID + E+++ +++E R++ + K R Sbjct: 244 CRRYEEALRPFKAEIREFPPVIDRAEL----EDLTALVREQFSDRIASALAGLSKSERAD 299 Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325 ID++ +++ +Y EH E +V E ++ +++R +L++ VR DGR + VR I Sbjct: 300 IIDEVVQEVEAYL-VEHGIHREPLVVYRAIEAVKREMLRRQILEEGVRPDGRKPDEVRPI 358 Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPC 383 S + LL HGS LF RG+TQA+ VTLG ++ Q + L+ + FM+HYNF P Sbjct: 359 SIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSPRTERFMVHYNFPPF 418 Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443 GE +GAPSRRE+GHG LA+RA+ PV+ + + T+R+VSEI ES+GSSSMATVC Sbjct: 419 CVGEARPIGAPSRRELGHGNLAKRALEPVIDR--ELSRTIRLVSEILESNGSSSMATVCA 476 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503 SLAL+ A IS VAG+AMGLVK+GD +L+DI G EDH G MDFKVAGT GITAM Sbjct: 477 GSLALVSAEAEISALVAGVAMGLVKEGDRHRVLTDIMGLEDHDGDMDFKVAGTRKGITAM 536 Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563 Q+D+K+GG+ I+ AL QAK+ R HIL+ M + ++ + P E I P +I Sbjct: 537 QLDIKLGGLDLEILSEALTQAKKARFHILDLMEE--AQKSIVPSAALPVAEHFHIDPSKI 594 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-----VP 617 +VIG G IR I+E+ K+++D + G VK+ + +++AARE I I VP Sbjct: 595 VHVIGKAGSTIREIIEKFEVKIDMDREKGKVKVTGADREKVKAAREHIEGIASREEPKVP 654 Query: 618 --EVNKIYKGQVVKVMDFGAFVHFCGA 642 EV Y+G V ++ D+G FV GA Sbjct: 655 KYEVGATYQGTVKRIADYGLFVELPGA 681 >gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex] Length = 743 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 405/711 (56%), Gaps = 41/711 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ L ++G+ AR +DG+ +A++G+T VL T V ++ F PLTV+Y+++ A G+ Sbjct: 23 GKKLVFQSGKYARFADGSAVASFGDTAVLVTAV-SKAKSSPASFLPLTVDYRQKAAAAGR 81 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP +LRRE +E EIL SRMIDRS+RPLF Y ETQV+ N++ D + P V+S+ Sbjct: 82 IPTNFLRRELGTSEREILTSRMIDRSLRPLFPDGYFYETQVVCNLLSVDGVNDPEVLSIN 141 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVEL 190 AASAAL +S +P+ GPV +V +I+ + V+NP R + L+L VS T + V+M+E Sbjct: 142 AASAALAISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTFPNLVVMLEA 201 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL----EEEMS- 245 A + + L AI G EC+ + +AI KL + K ++F+ L EE +S Sbjct: 202 SAENVYQQDFLKAIRTGVKECQTIAKAIEKLREDAGKP-----KREFTVLPSGSEELLSA 256 Query: 246 -QMIKED-LRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 +++ E+ LRV F +K R + ++ ++ + + I F + Sbjct: 257 VKLLSENRLRVILRDFNHDKISRDVAVATVRNDVMEKLRTSFPDTDPMIISESFNKFFKE 316 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 R ++LD+++R DGR +R+IS V L + HGS++F RG TQ + V + E Sbjct: 317 FFRQLILDEEIRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESAL 376 Query: 362 YVDSLS----GTQRNDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLP 414 D +S G + +F +HY F P AT E R+ G+ RRE+GHG LA + + PV+P Sbjct: 377 KSDPVSILMGGLKAKNFFLHYEFPPYATNETGRVGSGGSAGRRELGHGALAEKGLRPVVP 436 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------- 467 + +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI +P AG+A+GLV Sbjct: 437 --SDYPFTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVGLVSRVNPET 494 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 K DD+ IL+D+ G ED+LG MDFK+AGT GITA+Q D K+ G+ I++ ++ QA Sbjct: 495 KQIDDYRILTDLLGIEDYLGDMDFKLAGTKKGITALQADFKLPGVPLKIIMESVVQASDA 554 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 + HIL+ M++ + + R + P E + I + +G+GG ++ + +TG ++ Sbjct: 555 KSHILDIMAQTIKQPRNDKKDIWPLSEKLEIEAHKRPKFVGIGGSNLKKLTAETGVQITS 614 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSI-----TDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 DD T I + + + ++ A+EMI E IYK ++V++ + G V F Sbjct: 615 IDDLTFSIFAPNQSAMDEAKEMIEQFLKEEKEPELEFGAIYKARIVEMKETGVLVTFYPK 674 Query: 643 R-DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 L+H SQL +VA S + ++ GD + +K D G+++LS KV+ Sbjct: 675 MVPTLLHNSQLDVRKVAHPSALGLQVGDEISIKYFGRDPVSGRMRLSRKVL 725 >gi|298708135|emb|CBJ30476.1| Polyribonucleotide nucleotidyltransferase [Ectocarpus siliculosus] Length = 763 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/719 (34%), Positives = 383/719 (53%), Gaps = 55/719 (7%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + ETG+IA+ +DG V A G TVV+ + V +R+ D F PL+V+Y+E+ +A+GKIP Sbjct: 19 ITFETGKIAQLADGFVTARQGGTVVMVSAVSNRAEMDDSGFLPLSVDYREKAHALGKIPR 78 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 RR+ R T+ E+L++R +DR +RPLF Y +TQV+ V + P VV++ AAS Sbjct: 79 TPNRRDGRETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVVAINAAS 138 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-------EDQGSLDLFVSGTQDAVLMV 188 AAL +S +P++GP ++ ++G+ V+NP D D G DL + + VLM+ Sbjct: 139 AALCVSNIPWDGPAGCVRIGRVDGKLVVNPSPDTFSPTAWNDGGGFDLLYAANEHRVLMI 198 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E+ E ++ A+ H P+IEA L + KE ++ S M+ Sbjct: 199 EMGGGPTGERLMDSALKLAHKHVAPLIEAQRALQRDAGKEKVLPRSDAAPS-----PGML 253 Query: 249 KEDLRVSCFIPEK----YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--------SVFE 296 E +RV +P+ K DD S EG ++ + F Sbjct: 254 TEAMRVG--LPDAKALFAAPPKGGDDATAGESGNPSKADRGRAEGALLGRVRKALATSFP 311 Query: 297 DIQA------------KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 D + +R ++++ R DGR + RD++ +V +L HGS +F RG Sbjct: 312 DAPPAARVAAAEAVLKRAMRAAIVEEGRRPDGRGKDEARDLTGEVDVLPTVHGSGMFTRG 371 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRND------FMMHYNFLPCATGEVSRMGAPSRRE 398 TQ + +VTLG + L Q +HY F P E R+G +RR Sbjct: 372 QTQTLAIVTLGPALESAPQRFLGKAQEASDTLDARLYLHYEFPPYCVNETGRVGLVNRRM 431 Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458 +GHG LA RA+ V+P+T FPYT R+ +E+T S+GSSSMAT C +SLALMDAGVP+S P Sbjct: 432 VGHGNLAERAVLSVMPETETFPYTTRVSAEVTMSNGSSSMATACATSLALMDAGVPVSSP 491 Query: 459 VAGIAMGLV-----KDGDDF---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI- 509 V GI++GL+ DG+D IL DI G EDH G MDFKVAGT +GITA+Q+D+K+ Sbjct: 492 VGGISVGLMTTDAPADGEDIGPHSILMDIQGTEDHYGDMDFKVAGTATGITAIQLDVKLR 551 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569 GG+ ++ AL+ AK GR +L M K + L + PR EI+ D+ ++++G Sbjct: 552 GGVPLPVLSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGF 611 Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629 G+ ++GI E G +++ +G + S + + A ++R + E Y+G V Sbjct: 612 QGQTMKGIEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTT 671 Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFDD-RGKIKLS 686 V ++G V + GL+H+S ++ + A + D+VK GDTV V++++ D RG IKL+ Sbjct: 672 VHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLA 730 >gi|15612201|ref|NP_223854.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori J99] gi|81555135|sp|Q9ZK11|PNP_HELPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4155738|gb|AAD06718.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99] Length = 688 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 398/712 (55%), Gaps = 59/712 (8%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I R + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASA L L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227 Query: 241 EEEMSQMIKE------DLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHS 284 + E+ + KE + R+ + +Y + +++ K++ S HS Sbjct: 228 QNEL--LFKEGEGIVLNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEAHS 285 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 ++ EI E ++ +R +++ K+R D R E VR IS + LL H S LF RG Sbjct: 286 EFSLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRG 345 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 TQ++VV LG D Q ++L + FM HYNF P GE S +GA SRRE+GHG Sbjct: 346 QTQSLVVGVLGMDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHG 405 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+ Sbjct: 406 NLAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGV 462 Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMG+V + D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL Sbjct: 463 AMGMVSERQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALL 522 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QAKR R HIL M + + + P+ EI + PD+I +IG GG+VI+ IVE+ Sbjct: 523 QAKRARKHILKIMHEAKEKIVINFSHL-PQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFE 581 Query: 583 AKVNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGA 635 K++++ G VKI + L E + S+ E ++++ + QV +++DFGA Sbjct: 582 VKIDLNTPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGA 641 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 F+ +GL L + + K ++KEGD++ +++ F ++GKI L + Sbjct: 642 FLSLPKGGEGL-----LRKQNMDKCQVILKEGDSIRCRVISF-NKGKIALDL 687 >gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299] gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299] Length = 791 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/707 (36%), Positives = 395/707 (55%), Gaps = 39/707 (5%) Query: 18 LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77 ETGR+AR +DGA++A+ G++ V+ V R FFPL V+Y+ER A GKIP + Sbjct: 53 FETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPPTF 112 Query: 78 LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 RRE P + E+L R++DR+IRPLF K + +T V V+ D P V+++ ASAA Sbjct: 113 TRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGASAA 172 Query: 138 LMLSGLPFEGPVVGAQVDYIN--GQYVLNPR-LDEDQGSLDLFVSGTQDAVLMVELEANQ 194 L +S +P+ GPV +V + + +LNP D + L LF +G ++ LM+E +A Sbjct: 173 LSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQAGT 232 Query: 195 -----LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQM 247 + E VV A+ H K +IE +L + KE + V + + +KL ++ Sbjct: 233 ADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVFDR 292 Query: 248 IKEDLR------VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E LR + C K+ R K++ +LK ++V+ + E S+ ++ F + ++ Sbjct: 293 SSEKLRALYKEEIQC----KHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSR 348 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V+R ++ + K R+DGR +R + A+ +L HGSS+F RG+TQA+ VT+G D Q Sbjct: 349 VMRDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQ 408 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +D+ G M+HY+F + E R G SRREIGHG LA +++ ++P ++P+ Sbjct: 409 KLDAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPF 468 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-------FI 474 +RI +E ES+GSSSMA VC SLALMDAGVPI + V I++GLV D D+ + Sbjct: 469 AVRINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYE 528 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +LSDI G ED LG MDFK+AGT GIT +Q+D K GI +I++ A+ A R +++E Sbjct: 529 LLSDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDE 588 Query: 535 MSKVLSESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI------ 587 M + +S+ R + E + + + I +IG G IR + TGAKV+I Sbjct: 589 MDRAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDA 648 Query: 588 --DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 DD T+ I + + ++AA E I+ I VP+ + K +VV + +G F+ +DG Sbjct: 649 GVDDQCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLAYGWFLRLPNEQDG 708 Query: 646 LVHISQ-LSTERVAKTSD-VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 L+H S+ L T +V D + + G+ V VK+ D D G++ LS+K + Sbjct: 709 LLHASEYLHTRKVDPMKDNIFQIGEEVLVKIKDVSD-GRVGLSVKAL 754 >gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 765 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 260/713 (36%), Positives = 401/713 (56%), Gaps = 31/713 (4%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 HTV +E R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y+ Sbjct: 25 HTVSVEVGSRKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDYR 83 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE T+ EIL SR+IDRSIRPLF Y +TQ++ N++ D + Sbjct: 84 QKAAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQILCNLLAVDGVN 143 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ ASAAL LS +P+ GP+ +V I+G+ V+NP R + +LDL VS + Sbjct: 144 DPEVLAINGASAALTLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTLDLIVSSAPR 203 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 V+M+E A + + AI G + +I+ I +LAK P K F+ EE Sbjct: 204 SQVVMLEAAAENVLQQDFCHAIKVGVKHGQQIIQGIQQLAKEQGV-PKRTVQKLFTAPEE 262 Query: 243 EM---SQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + Q+ E + S F +K R + I+ ++ + + EI+ F Sbjct: 263 TVECAKQLASEKITAVFSDFTHDKISRDEAINKIRLETEEQLKEKFPDSEPYEIMEAFNV 322 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + + R ++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 323 VSKDIFRNLILNEYRRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSL 382 Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 E D ++SG + +FM+HY F P AT E+ ++ + +RRE+GHG LA +A+ PV+ Sbjct: 383 ESSVKSDLITTAISGIKEKNFMLHYEFPPYATNEIGKISSMNRRELGHGALAEKALKPVI 442 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467 P +FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV Sbjct: 443 PN--EFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTSPNSE 500 Query: 468 KDGD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 K+GD ++ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA Sbjct: 501 KNGDIENYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPLKIVMEAIQQAT 560 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K + + R E P VE + +P + +G GG ++ + +TG V Sbjct: 561 VAKREILQIMNKTIGKPRASRKENGPLVETVQVPLSKRARFVGPGGYNLKKLQAETGVTV 620 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + A + A+E I + E IY + ++ D G V + Sbjct: 621 SQVDEETFSIFAPTPAAMHEAQEFITEVCKDDQDYQLEFGAIYTATITELRDIGVMVKLY 680 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ S + E G + VK D G+++LS KV+ Sbjct: 681 PNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 733 >gi|308062494|gb|ADO04382.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Cuz20] Length = 688 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 256/710 (36%), Positives = 395/710 (55%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASA L LS + V ++ I ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASATLFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E +L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQQLNALEEPSMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ ++R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVEPDKIVEIIGQGGRVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|208435109|ref|YP_002266775.1| polynucleotide phosphorylase [Helicobacter pylori G27] gi|257096696|sp|B5Z8L0|PNP_HELPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|208433038|gb|ACI27909.1| polynucleotide phosphorylase [Helicobacter pylori G27] Length = 688 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/695 (36%), Positives = 391/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR+ RPLF K Y+ TQ+ + V+ HD+E+ V ++ AAS AL L+ Sbjct: 78 GRAQDFEILTSRLIDRTFRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASVALFLA 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I+ ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIDDEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFHEIAKKISEAHSEFSLEEIEWSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D+ ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAK R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYTIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V++EGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLREGDSIRCRVISF-NKGKIALDL 687 >gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST] gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST] Length = 737 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/705 (35%), Positives = 399/705 (56%), Gaps = 33/705 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R LK+ +G+ AR +DG + T G+T V+ T V + ++ F PL V+Y++++ A G+I Sbjct: 1 RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQKSQNAS-FLPLVVDYRQKSAAAGRI 59 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P +LRRE P+E EIL +R++DRSIRPLF ++ +TQ++ N++ D + P V ++ Sbjct: 60 PTNFLRRELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDVQAING 119 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVELE 191 ASAAL LS +P+ GPV +V ++ + ++NP E Q SLDL V+ T Q+ V+M+E Sbjct: 120 ASAALALSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSLDLVVTATRQNLVVMLEGR 179 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246 N ++E+ + AI G E + +I I +L KM K EP+ + + MS+ Sbjct: 180 GNVVNENELRMAIKKGTKEAQLIINGIERLQKMYGKPKRALEPLPAVDGEIQNAVQTMSE 239 Query: 247 M-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 M ++E R + +K+ R + + + + S + + G I F V R Sbjct: 240 MRLREIFR--DYSHDKFSRDQAVSKTRTDTIDKVWSSFPAADPGVISETFNKFVKGVFRE 297 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L++K R DGR + +R IS V L + HGS+LF RG TQ V L + E +D Sbjct: 298 MLLEEKRRCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDP 357 Query: 366 L----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 + SG + +F +HY F P ATGE ++G RREIGHG LA + + P++P + P+ Sbjct: 358 IASLDSGMRSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIPN--EHPF 415 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDF 473 T+R+ SE+ ES+GSSSMATVC S+ALMDAGVP+ + AG+A+GL+ K D+ Sbjct: 416 TVRLTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENNDTKHLQDY 475 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+D+ G ED++G MD KVAGT G+TA+Q D+K+ GI +++ ALQ++ R IL+ Sbjct: 476 CILTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMEALQKSMEARFKILD 535 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + + SR + P + + I Q ++G GG +R + +TG ++ DD+ + Sbjct: 536 LMDETIGASRTVRKDCWPVTDRLVIEAHQRAKLLGPGGTNLRRLYLETGVQLTPDDETSF 595 Query: 594 KIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647 +I + S A + A+E + ++ +P E IY ++V++ D G V + L+ Sbjct: 596 RIFAPSEAAMHEAKEYLENLLKAEKIPDLEFGAIYTARIVELRDTGVMVTLYPSMPPTLL 655 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 H SQL ++A S + ++ G + VK D G ++LS KV+ Sbjct: 656 HNSQLDQRKIAHPSALGLQVGAEIQVKYFGRDPVSGYMRLSRKVL 700 >gi|325186086|emb|CCA20587.1| polyribonucleotide nucleotidyltransferase putative [Albugo laibachii Nc14] Length = 826 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/715 (35%), Positives = 392/715 (54%), Gaps = 52/715 (7%) Query: 15 PLKL---------ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 PLKL G AR +DG V+ T G+ V+L T V K G+DF PL V+Y+ Sbjct: 94 PLKLLGSLDKPTYSIGEFARLADGGVMTTCGKCVILTTAVSQSGRKKGKDFLPLMVDYRV 153 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G IP R+E ++ EIL SR+IDR IRPLF K + ETQ+I V +D ++ Sbjct: 154 KYYASGIIPDTARRKEFAGSDEEILQSRVIDRVIRPLFPKGFLEETQIIATVHSYDPDND 213 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDA 184 V+++ + SAAL S +P++GPV +V ++GQ VLNP + + +L++ +G Q Sbjct: 214 SLVLAINSTSAALATSDIPWDGPVGCVRVVQVDGQLVLNPTESQKEAATLNILYAGNQKR 273 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 +M+E E Q+ E + +A+ F H+ V++A +L K+ KE DS K +E Sbjct: 274 TIMIEAEGEQIDEKRLSEALRFAHDGVADVLKAQRELIKLHGKEKRQYDSFTIDKTLKEQ 333 Query: 245 SQMI-----------KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 ++ I +D + + EK+V K I L+ + + +++ Sbjct: 334 AKKIGLQDAVQAIQNTKDTKKARQNAEKHVFGKIISVLRDQF------KDRQYDDQLFTI 387 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 D +R +++++ R DGR +R I+A+ +L HGS++F RGDTQA+ VT Sbjct: 388 AAHDTFELALRDQIMNQR-RFDGRPLAQIRQINARTSILPMAHGSAVFSRGDTQALCSVT 446 Query: 354 LGT-----REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 LG+ R +D ++ ++HY F P E R+G +RR +GHG LA +A Sbjct: 447 LGSLDQGLRLRSATIDPSDESEYKHAILHYEFPPYCVNETGRLGGINRRMVGHGALAEKA 506 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I P+LP +FPYT+R+ SEIT SDGSSSMAT+CG SLAL+DAGVPI P+AGI++GLV Sbjct: 507 ILPILPSIEEFPYTIRMTSEITGSDGSSSMATICGVSLALLDAGVPIEAPIAGISVGLVS 566 Query: 469 DGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 + + + +++DI G EDH G MDFKVAGT GITA+Q+D+KI G+ +++ ++ Sbjct: 567 EPRESSSRFGKYRLVTDILGSEDHYGDMDFKVAGTRKGITALQLDVKIPGVPPSVLFESI 626 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPR------VEIMAIPPDQIRNVIGMGGKVIR 575 ++A+ R IL+ M + L++ R L + +E+ IP IR +IG G IR Sbjct: 627 EKAREARYQILDSMDQTLAKPRDTLKNSASQTGEANIMEVFKIPSTSIRYLIGKAGSNIR 686 Query: 576 GIVEQTGAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632 + + TG ++ID DGTV++ +E A+ +I TD ++ Y +V ++MD Sbjct: 687 SMEKSTGCTISIDRYDGTVRVTGPP-GLVENAKNLIVEFTDGTFFKIGDTYTMKVAELMD 745 Query: 633 FGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGA + G +HIS+LS ++ +K GD + ++ GK+ + Sbjct: 746 FGASLESTRPGKHRAFIHISELSLQQSQDIRQHLKIGDEIKAVCIEAGISGKMSV 800 >gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] Length = 765 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 253/706 (35%), Positives = 400/706 (56%), Gaps = 36/706 (5%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R ++L +G++A+ +DG+ + G+T V+ T V ++ F PL V+Y+++ A G+I Sbjct: 36 RKMELSSGKLAKFADGSAVVQLGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRI 94 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P YLRRE T+ EIL SR+IDRSIRPLF Y +TQ++ N++ D + P ++++ Sbjct: 95 PTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDPDILAING 154 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG-TQDAVLMVELE 191 ASAAL LS +P+ GP+ +V ++G+ V+NP R + +L+L V+G Q+ V+M+E Sbjct: 155 ASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMASSTLNLVVAGAAQNQVVMLEAT 214 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEE--EMSQ 246 A + + AI G + + +I+ I +L KE V+ K F EE E+++ Sbjct: 215 AENILQQDFCHAIKVGVKQTQHIIQGIQQL----VKERGVVKRTVQKLFLAPEEIVELAK 270 Query: 247 MIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + + F +K R + I+ ++ + + EI+ F + + Sbjct: 271 KLASNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNVVSKDIF 330 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++L++ R DGRD ++RDI +V + + HGS+LF RG TQ + VT + E Sbjct: 331 RNLVLNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKS 390 Query: 364 D----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 D ++SG + +FM+HY F P AT E+ ++ +RRE+GHG LA RA+ PV+PQ F Sbjct: 391 DVISTAVSGIKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHGALAERALKPVIPQ--DF 448 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------DGDD 472 P+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S VAG+A+GLV D +D Sbjct: 449 PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQGKGDIED 508 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + +L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI I+V A+QQA + IL Sbjct: 509 YRLLTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATAAKREIL 568 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 M++ L++ R E P VE + +P + +G G ++ + QTG V+ D+ T Sbjct: 569 QIMNQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQLDEET 628 Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FCGARDGL 646 + + + + ARE I I D EVN IY + ++ D G V + L Sbjct: 629 YSVFAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVL 688 Query: 647 VHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 +H SQL ++ S + E G + VK D G+++LS K++ Sbjct: 689 LHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKIL 734 >gi|109948073|ref|YP_665301.1| polynucleotide phosphorylase/polyadenylase [Helicobacter acinonychis str. Sheeba] gi|123362511|sp|Q17VM4|PNP_HELAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109715294|emb|CAK00302.1| polyribonucleotide nucleotidyltransferase [Helicobacter acinonychis str. Sheeba] Length = 688 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 257/696 (36%), Positives = 392/696 (56%), Gaps = 57/696 (8%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ ++L G+T++LA+V +R L +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLLYRLGKTIILASVCVERELV-SEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV-VSMVAASAALML 140 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V A++A + Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137 Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQ 194 PF+ V ++ I+ ++++NP +Q SLDLFVSGT++++ M+E+ + N Sbjct: 138 HAAPFKS-VSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNA 196 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKE 250 L E ++L+A+ +LA+ KE + + F+ + + SQ I Sbjct: 197 LEEPLMLEAL---------------ELAQKSLKETCTLYEETFTPHQNALLFKESQGIVF 241 Query: 251 DLRVSCFIPEKYVR----------CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + R+ + +Y + +++ ++ S HS +N EI E ++ Sbjct: 242 NERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFNLEEIELSLEKVKK 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +++ K+R D R E VR IS + LL H S LF RG TQ++VV LGT D Sbjct: 302 TEIRRMIIRDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361 Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D+ ILSD Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSD 478 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 ISG ED G MDFK+AG GITAMQMD K+ GI I+ L QAKR R HIL M + Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQTLLQAKRVREHILKIMHEA 538 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMG 597 Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + L E + S+ E ++++ + QV +++DFGAF+ +GL+ Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQH 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + +VA +KEGD++ +++ F ++GKI L + Sbjct: 658 MERCQVA-----LKEGDSIRCRVISF-NKGKIALDL 687 >gi|260804641|ref|XP_002597196.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae] gi|229282459|gb|EEN53208.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae] Length = 723 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 266/712 (37%), Positives = 398/712 (55%), Gaps = 47/712 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R +++ TG+ AR +DG + G+T + T V R+ F PLTV+Y+++ A G+I Sbjct: 12 RVMRISTGKFARFADGCAVVEIGDTSAMVTAV-SRTRPSSAGFLPLTVDYRQKAAAAGRI 70 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P +LRRE T+ EIL+SR+IDRSIRPLF Y ETQVI N++ D + P + S+ Sbjct: 71 PTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASING 130 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQ-DAVLMVELE 191 AS AL LS P+ GP+ +V ++ +YV+NP R + L+L V+G + + V+M+E Sbjct: 131 ASTALALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGS 190 Query: 192 ANQLSEDVVLD----AIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEM 244 A E+V+L AI G E + +I I L K KE K F+ E E+ Sbjct: 191 A----ENVLLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRT-PPKLFTPPEEILEQA 245 Query: 245 SQMIKEDLRV--SCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSWNEGEIVSVFEDI 298 Q+ E L+V + K+ R + +++ +K+ F E + E +SV I Sbjct: 246 RQLATERLQVVFTDATHHKFSRDNAVQEIRAEVEQKLKELF-PEAEPFMINESISV---I 301 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +V R ++LD R DGRD ++RDIS V L + HGS+LF RG TQ + VT +++ Sbjct: 302 TKQVFRNLILDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQ 361 Query: 359 DEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 +D L G ++ DFM+HY F P AT E R+ + SRRE+GHG LA A+ PV+P Sbjct: 362 ASLKMDPIAEILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVP 421 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--- 471 + FP+T+R+ +E+ ES+GSSSMA+ C SLALMDAGVPIS PVAG+A+GLV D Sbjct: 422 --SDFPFTIRLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNN 479 Query: 472 -----DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 D+ +L+DI G ED++G MDFK+AGT G+TA+Q D+K+ G+ I++ A QQA Sbjct: 480 PTEIQDYKLLTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATM 539 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 + I+N M++ L++ R E+ P E + +P + +G GG IR I +TG + Sbjct: 540 AKSDIINIMNRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTIT 599 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD---VPEVN--KIYKGQVVKVMDFGAFVH-FC 640 D+ T + + + A + ARE I + P+++ IY + ++ + G V F Sbjct: 600 QVDEETFSVFAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFP 659 Query: 641 GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 + L+H SQL RV+ S + G + VK D G ++LS KV+ Sbjct: 660 TMQPTLLHNSQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRKVL 711 >gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] Length = 789 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/711 (35%), Positives = 400/711 (56%), Gaps = 31/711 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G++ V+ T V R+ F PL V+Y+E+ Sbjct: 53 VTVDLGARKLEISSGKLARFADGCAVLKLGDSSVMVTAV-SRTKPSPSQFMPLVVDYREK 111 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 + A G+IP +LRRE T +EIL SR+IDRS+RPLF Y ETQ++ N++ D + P Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184 V+++ ASAAL LS +P+ GPV +V ++G++++NP E S L+L ++ G Q Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LE 241 ++M+E A + + A+ G + +I+ I +LAK KE I K F + Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQ-KIFQAPVDIV 290 Query: 242 EEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 E Q E + S F +K R + I+ ++ + EI+ F + Sbjct: 291 ESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVS 350 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +V R ++L++ R DGRD ++R+I+ +V L + HGS+LF RG TQ + VT + E Sbjct: 351 KEVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIES 410 Query: 360 EQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 D +LSG + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ PV+P+ Sbjct: 411 SMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIPK 470 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KD 469 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GL+ K+ Sbjct: 471 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKN 528 Query: 470 GD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 G+ D+ +L+DI G ED+ G MDFK+AGT GITA+Q D+KI G+ I++ A+QQA Sbjct: 529 GEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVA 588 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 + I+ M+KV+S+ R E +P E + +P + +G GG ++ I +TG V+ Sbjct: 589 KKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQ 648 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641 D+ T + + + + + ARE I I E +Y + ++ D G V + Sbjct: 649 IDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPN 708 Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ S + E G + VK D G+++LS KV+ Sbjct: 709 MTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVL 759 >gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] Length = 789 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/711 (35%), Positives = 399/711 (56%), Gaps = 31/711 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G++ V+ T V R+ F PL V+Y+E+ Sbjct: 53 VTVDLGARKLEISSGKLARFADGCAVVKLGDSSVMVTAV-SRTKPSPSQFMPLVVDYREK 111 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 + A G+IP +LRRE T +EIL SR+IDRS+RPLF Y ETQ++ N++ D + P Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184 V+++ ASAAL LS +P+ GPV +V ++G++++NP E S L+L ++ G Q Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LE 241 ++M+E A + + A+ G + +I+ I +LAK KE I K F + Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQ-KIFQAPVDIV 290 Query: 242 EEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 E Q E + S F +K R + I+ ++ + EI+ F + Sbjct: 291 ESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVS 350 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 V R ++L++ R DGRD ++R+I+ +V L + HGS+LF RG TQ + VT + E Sbjct: 351 KDVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIES 410 Query: 360 EQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 D +LSG + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ PV+P+ Sbjct: 411 SMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIPK 470 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KD 469 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GL+ K+ Sbjct: 471 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKN 528 Query: 470 GD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 G+ D+ +L+DI G ED+ G MDFK+AGT GITA+Q D+KI G+ I++ A+QQA Sbjct: 529 GEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVA 588 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 + I+ M+KV+S+ R E +P E + +P + +G GG ++ I +TG V+ Sbjct: 589 KKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQ 648 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641 D+ T + + + + + ARE I I E +Y + ++ D G V + Sbjct: 649 IDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPN 708 Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ S + E G + VK D G+++LS KV+ Sbjct: 709 MTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVL 759 >gi|317011412|gb|ADU85159.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori SouthAfrica7] Length = 688 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 261/696 (37%), Positives = 395/696 (56%), Gaps = 57/696 (8%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ ++L G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GL-PFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQ 194 + PF+ V ++ ++ +++NP +Q SLDLFVSGT++++ M+E+ + N Sbjct: 138 HVAPFKS-VNACRIARVDNAFIINPSASLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNA 196 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKE 250 L E ++L+A+ +LA+ KE + + F+ + E+ SQ I Sbjct: 197 LEEPLMLEAL---------------ELAQKSLKETCTLYEETFTPYQNELLFKESQGIVF 241 Query: 251 DLRVSCFIPEKYVR----------CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 + R+ + +Y + +++ ++ S HS + EI E ++ Sbjct: 242 NERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFGLEEIEWSLEKVKK 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361 Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSD Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 ISG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAKR R HIL M + Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKRAREHILKIMHEA 538 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI Sbjct: 539 KEKIVINFSHL-PMTEIFNVAPDKIIEIIGQGGRVIREIVERFEVKIDLNKPSGEVKIMG 597 Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + L E + S+ E ++++ + QV +++DFGAF+ +GL+ Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQH 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + +VA +KEGD++ +++ F ++GKI L + Sbjct: 658 MERCQVA-----LKEGDSIRCRVISF-NKGKIALDL 687 >gi|332674015|gb|AEE70832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 83] Length = 688 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 260/710 (36%), Positives = 399/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ ++L G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL LS + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMMEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + GLL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDRAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora infestans T30-4] gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora infestans T30-4] Length = 893 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 270/751 (35%), Positives = 403/751 (53%), Gaps = 91/751 (12%) Query: 21 GRIARQSDGAVLATYGETVVLATVVY-----DRSLKDG---QDFFPLTVNYQERTYAVGK 72 G++A+ +DGAVLA+ G TV+L TVV + S+ G +DF PLTV+++ +++AVG Sbjct: 88 GKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGL 147 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP RRE ++ E+L SR++DR+IRPLF + Y TQV+ V +D + P VV++ Sbjct: 148 IPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVN 207 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191 +ASA L +S +P++GPV +V ++GQ V+NP + + ++D+ +GT + +MVE Sbjct: 208 SASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAEHAIMVEAS 267 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246 ++++E + +A+ H IE KLA K P+ I + ++K EE + + Sbjct: 268 GDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREYSPLFIAPEVWAKAEE-LGR 326 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS----YFSSEHSSWNEGEIVSVFEDIQAKV 302 E L S + K R + ++ KM++ +F++ + ++ I D +V Sbjct: 327 ADAEALIASGRV-NKLARQEGEREVYNKMLTGMRQHFATANPPVDDAAIQRAAHDTFQRV 385 Query: 303 VRTVML--------DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 +R +L +K VR+DGR VR + + +L HGSSLF RG+TQ + VTL Sbjct: 386 LRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTL 445 Query: 355 GT-----------REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403 G E + + + M+HY F P E R+G +RR IGHG Sbjct: 446 GPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGHGA 505 Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 LA +A+ P+LP +FPYT+R+ SE+ SDGSSSMATVCG SLALMDAGVP+ + VAGIA Sbjct: 506 LAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGIA 565 Query: 464 MGLVKDGDDFI------------ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI-G 510 +GLV GD F +++DI G EDH G MDFKVAGT SG+TA+Q+D+K+ G Sbjct: 566 IGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSGVTALQLDVKLPG 625 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL---GEFTPRVEI-MAIPPDQIRNV 566 G+ ++ L++AK RLHIL MS LSE R L G P V I I + I + Sbjct: 626 GVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSALPNVSIECVIATNLIGAL 685 Query: 567 IGMGGKVIRGIVEQTGAKVNIDD--DGTVKIASSSLAEIEAAREMIRSI----------- 613 IG+GG IR + + V+I D +G V++ ++ + E AR+ I++ Sbjct: 686 IGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAA-GDAEKARDWIQTELAGFASSGPRG 744 Query: 614 -----------TDVPEVNK----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 D NK Y V +VMDFGA + + G VHIS+L Sbjct: 745 SNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAILEASSGQRGFVHISEL 804 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 S ++V+ DVV EG + + L GK+ Sbjct: 805 SRDKVSNIHDVVSEGQEMEFECLQDGASGKM 835 >gi|217034082|ref|ZP_03439503.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10] gi|216943477|gb|EEC22931.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10] Length = 688 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 258/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKAEEFALKQVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL LS + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFGEIIKGIESSALSERENVFNEIAGKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + GLL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LG D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGADNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLNQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 362 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/356 (54%), Positives = 261/356 (73%) Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I+ VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT Sbjct: 4 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 63 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P Sbjct: 64 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 123 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LS Sbjct: 124 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 183 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + Sbjct: 184 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 243 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++ R + EF PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA+ Sbjct: 244 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 303 Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + + + A I IT EV +IY +V +++DFGAFV G ++GLVHISQ++ Sbjct: 304 TDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIA 359 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 22/192 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQ 64 R L + TG + R + G+ L T GET L T V D + + D F N+ Sbjct: 29 RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFP 87 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 Y+VG+ G + P EI R+ R + + K V + + Sbjct: 88 --PYSVGET--GMV---GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 140 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLFVS 179 S + S+ AS ALM +G+P + V G + + + VL+ L DED G +D V+ Sbjct: 141 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 200 Query: 180 GTQDAVLMVELE 191 G++D + ++++ Sbjct: 201 GSRDGISALQMD 212 >gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus ATCC 51449] gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus ATCC 51449] Length = 709 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/717 (34%), Positives = 406/717 (56%), Gaps = 49/717 (6%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 +++E+ + +A+ ++G +L G +V+LA+V + K +F PL+V Y E+ Sbjct: 4 IKLEFENLSEQYSFNYVAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEK 63 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA K P G+++RE +P+E EIL SR+IDR++RPLF K Y T +++ V+ +D +S Sbjct: 64 TYANNKFPSGFIKREGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDL 123 Query: 127 HVVSMVAASAALMLSGLPFEG----PVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181 + ++ AA+ AL +S LP E V G ++ +G +++NP +++ + L+LFVSG Sbjct: 124 QLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGR 183 Query: 182 QDAVLMVELE-------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234 D +LM+E++ AN+LSE+ L+A+ N K + + K P +S Sbjct: 184 DDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIKNATQTYHQQFAPYKKSPFAFES 243 Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYV----RCKQIDDLKKKMVSYFSSEHSSWNEGE 290 + +L+E++ +I+ K++ R Q+ L K++V E + Sbjct: 244 AN-DELDEQLLNIIQTHYHTPITEAIKHMAKSERHTQLKALIKQVVRECEIEDEKKVQEH 302 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 I++ + K+VR ++L +R DGR + VR IS Q +L HGS LF RG TQA+V Sbjct: 303 IMAY----KRKLVREMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALV 358 Query: 351 VVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 T+G D Q + L + F+ HYNF + GE S +G+ RRE+GHG LA+RA Sbjct: 359 SATIGGDNDAQNYEMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLAKRA 418 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 +H + + + T+R+VSEI ES+GSSSMA+VCG SLAL G+ + +AG+AMGLV Sbjct: 419 LHSSVQEQDK---TIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVT 475 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 + IL+DISG EDH G MDFKVAG GI+AMQMD+K+GGI++ I+ AL QAK R Sbjct: 476 QDEQCAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAKEAR 535 Query: 529 LHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 IL M + + +++ L + P+ E IPP +I VIG GG+VI+ I+E+ +V+I Sbjct: 536 EQILAIMEE--ARAKIVLNDVILPKSESFMIPPHKIVEVIGAGGRVIKDIIERF--EVSI 591 Query: 588 D---DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK--------------GQVVKV 630 D + G V +++S++ ++ A+ I + K Y+ G++ K+ Sbjct: 592 DLARESGMVSVSASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKI 651 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +DFG FV DGL+HIS+++ ++ + S++ + ++L ++ K++L + Sbjct: 652 VDFGIFVELPRGGDGLIHISKITKDKTQQLSEIFHNVSELECEILS-QNKNKVELGL 707 >gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi] Length = 738 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/705 (35%), Positives = 396/705 (56%), Gaps = 33/705 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R +++ +G+ AR +DG + T G+T V+ T V R F PL V+Y++++ A G+I Sbjct: 7 RVVRISSGKYARFADGCAVVTIGDTAVMVTAVA-RQKSQNTSFLPLVVDYRQKSAAAGRI 65 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P +LRRE P+E EIL +R++DRSIRPLF ++ +TQ++ N++ D + P V ++ Sbjct: 66 PTNFLRRELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDVQAING 125 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVELE 191 ASAAL LS +P+ GPV ++ ++ + ++NP E Q +LDL V+ T Q+ V+M+E Sbjct: 126 ASAALALSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSALDLVVTATRQNLVVMLEGR 185 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246 N ++E+ + AI G E + +I I +L K K EP ++ + M++ Sbjct: 186 GNVVNENEIRMAIKRGTKEAQLIINGIERLQKTHGKAKRPIEPSPTVDEEIAGAVRTMAE 245 Query: 247 M-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 M ++E R F +K+ R + + + + S + + + G I F V R Sbjct: 246 MRLREIFR--DFTHDKFSRDQAVSKTRTDTIDKVWSSYPTADPGLISEAFNKFTRSVFRE 303 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L+ VR DGR + +R IS V L + HGS+LF RG TQ V L + E +D Sbjct: 304 MLLEDGVRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDP 363 Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++ G + +F +HY F P ATGE ++G RREIGHG LA + + P++P A+ P+ Sbjct: 364 VTSLDAGMKSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIP--AEHPF 421 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DF 473 T+R+ SE+ ES+GSSSMATVC S+ALMDAGVP+++ AG+A+GLV + D+ Sbjct: 422 TIRLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENNDTKHLLDY 481 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ILSD+ G ED++G MD KVAGT GITA+Q D+KI GI +++ ALQ++ R IL+ Sbjct: 482 RILSDLLGIEDYMGDMDMKVAGTRRGITAIQADLKIPGIPLKVVMEALQKSMEARFKILD 541 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + +R + P + + I P Q ++G GG +R + +TG ++ +D+ + Sbjct: 542 IMDGTIGATRTIKKDCWPVTDRLVIEPSQRSRLLGPGGVNLRRLYLETGVQLTQEDETSF 601 Query: 594 KIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647 +I + S A + A+E + + +P E IY ++V++ D G V + L+ Sbjct: 602 RIFAPSEAAMHEAKEHLEELLKTEKIPDLEFGAIYTAKIVELRDTGVMVTLYPSMPPTLL 661 Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 H SQL ++A S + + G + VK D G ++LS KV+ Sbjct: 662 HNSQLDQRKIAHPSALGLPVGSEIQVKYFGRDPVSGFMRLSRKVL 706 >gi|307637887|gb|ADN80337.1| Poly ribonucleotide nucleotidyl transferase [Helicobacter pylori 908] gi|325996485|gb|ADZ51890.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori 2018] Length = 688 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 253/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I R + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ K++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR IS + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q ++L + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 KR R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KRAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + ++ ++ + + + ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + ++KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKIALDL 687 >gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum] gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum] Length = 747 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 254/709 (35%), Positives = 402/709 (56%), Gaps = 40/709 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 GR LK+ TG+ AR +DG +AT G+T V+ T V ++ +F PL V+Y++++ A G+ Sbjct: 43 GRSLKISTGQYARLADGCAVATLGDTSVMVTAV-SKTKPSPSNFLPLVVDYRQKSAAAGR 101 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP + RRE P+E EIL SR+IDRS+RPLF + + ETQV+ N++ D ++P VVS+ Sbjct: 102 IPTNFFRRELGPSEKEILTSRLIDRSLRPLFPERFAYETQVVCNMLAVDGVNNPDVVSIN 161 Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVEL 190 AASAAL LS +P+ GPV ++ I+ + ++NP E Q S L+L +S T ++ V+M+E Sbjct: 162 AASAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSILNLVLSATRKNLVVMLEG 221 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250 AN + + +L A+ G E + ++ +I KL K K +K + E S + E Sbjct: 222 NANNILQQDLLKAVKLGTKEVQQIVASIEKLQKSYGK------TKRNIEYPLEASHEVYE 275 Query: 251 DLR----------VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 LR ++ + +K R + D++ + S S + + I Sbjct: 276 ALRSLSEMRVRKILTDYSLDKLGRDNALTDVRSDVTEKIKSNFSDLDMSVFSETYNKIVK 335 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 ++ R ++ ++ R DGRD + +R+I +V L + HGS++F RG TQ VTL + + Sbjct: 336 QIFRDLVFEEGKRCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSA 395 Query: 361 QYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 +D + SG + +F +HY F P AT E R+G RREIGHG LA + + P +P Sbjct: 396 MKLDPMAMLISGVKEKNFFLHYEFPPFATKETGRIGPIGRREIGHGALAEKGLTPSIPD- 454 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471 FP+T+R+ SE+ ES+GSSSMA+VCG +LALMDAGVPI P AG+A+GL+ D Sbjct: 455 -DFPFTIRLTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDDEKAN 513 Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 D+ +L+D+ G ED++G MDFK+AGT GITA+Q D+KI G+ I++ ++Q+A + Sbjct: 514 ITDYRLLTDLLGIEDYMGDMDFKIAGTKKGITALQADIKIPGLPLKIVMESIQKATEAKQ 573 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 IL M + + + R + P E + + + ++G+GG ++ ++ +TG +V+ D Sbjct: 574 KILQIMHECIDKPRTVKKDNWPVSEKLKVEAHKRAKLVGVGGINLKKLLAETGVQVSAID 633 Query: 590 DGTVKIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGAR 643 D T +I + + + ++ A+E I + VP E IY +V++ D G V + G Sbjct: 634 DTTFEIFAPNQSAMDEAQEYINKLLTAEKVPDLEFGGIYTATIVELRDIGVMVTLYPGMP 693 Query: 644 DGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 L+H SQL +VA S + E G + VK D G ++LS KV+ Sbjct: 694 PALLHNSQLDQRKVAHPSALDLEVGQEIQVKYFGRDPVSGLMRLSRKVL 742 >gi|188528001|ref|YP_001910688.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Shi470] gi|257096697|sp|B2UUX6|PNP_HELPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188144241|gb|ACD48658.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Shi470] Length = 688 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 257/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R G+DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVGEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLKEIELSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRCMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I +AG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLIAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687 >gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia guttata] Length = 936 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 254/712 (35%), Positives = 402/712 (56%), Gaps = 34/712 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V +E GR ++L +G++A+ +DG+ + G+T V+ T V Q F PL V+Y+++ Sbjct: 200 VTVEVGGRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 258 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE T+ EIL SR+IDRSIRPLF Y +TQ++ N++ D + P Sbjct: 259 AAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDP 318 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ ASAAL LS +P+ GP+ +V ++G+ V+NP R + +L+L V+G Sbjct: 319 DILAINGASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMSSSALNLVVAGALHSQ 378 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242 V+M+E A + + AI G K + I + ++ ++ +V + K F EE Sbjct: 379 VVMLEATAENILQQDFCHAIKVG---VKQTQQIIQAIQQLVKEQGVVKRTVQKLFIAPEE 435 Query: 243 --EMSQMIKEDLRVSCFI---PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 E+++ + + + F +K R + I+ ++ + + EI+ F Sbjct: 436 IVELAKKLASNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNV 495 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + + R ++L++ R DGRD ++RDI +V + + HGS+LF RG TQ + VT + Sbjct: 496 VSKDIFRNLVLNEYRRCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSL 555 Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 E D ++SG + +FM+HY F P AT E+ ++ +RRE+GHG LA RA+ PV+ Sbjct: 556 ESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHGALAERALKPVI 615 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----- 468 PQ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S VAG+A+GLV Sbjct: 616 PQ--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQG 673 Query: 469 --DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 D +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI I+V A+QQA Sbjct: 674 KGDIEDYRLLTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATA 733 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 + IL+ M++ L++ R E P VE + +P + +G G ++ + QTG V+ Sbjct: 734 AKREILHIMNQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVS 793 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FC 640 D+ T + + + + ARE I I D EVN IY + ++ D G V + Sbjct: 794 QLDEETYSVFAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYP 853 Query: 641 GARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+HISQL ++ S + E G + VK D G+++LS K++ Sbjct: 854 NMTPVLLHISQLDQRKIKHPSALGLEVGHEIQVKYFGRDPTDGRMRLSRKIL 905 >gi|261838537|gb|ACX98303.1| polynucleotide phosphorylase [Helicobacter pylori 51] Length = 688 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 259/710 (36%), Positives = 399/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL LS + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFLINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + GLL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDTEGDMDFKIAGNLEGITAMQMDTKMSGIPLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|308183320|ref|YP_003927447.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori PeCan4] gi|308065505|gb|ADO07397.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori PeCan4] Length = 688 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 253/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIAKMDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQQLNALEEPLMLEAL---------------ELAQKSLKETCTLYEEAFTPY 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ S+ I + R+ + +Y + +++ K++ S HS + Sbjct: 228 QNELLFKESEGIALNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR IS + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 KR R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KRARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + + ++ + + + ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 519 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/391 (50%), Positives = 273/391 (69%), Gaps = 4/391 (1%) Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 S + E + I + ++ K R ++ +LK ++V+ + E S + E+ + F Sbjct: 21 LSAIRSEFGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFG 76 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +I+ + VR +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT Sbjct: 77 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 136 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 D Q +D+L G +++ FM+HYNF P + GE RMG RREIGHGRLARR++ +LP Sbjct: 137 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 196 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ F IL Sbjct: 197 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 256 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+IL +M+ Sbjct: 257 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 316 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 +++ +SR +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG++KI Sbjct: 317 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 376 Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 S EAAR+ + IT E+ KIY G Sbjct: 377 GESKEAAEAARQRVLGITAEAEIGKIYVGNT 407 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 26/194 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66 RPL +E G + + + G+ L T GET +V+AT+ R + +G+ P ++Y Sbjct: 103 RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 161 Query: 67 TYAVGKIP--GGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDL 122 ++VG+ GG RRE I R+ RS++ + + + +V+ + + + Sbjct: 162 PFSVGECGRMGGAGRRE-------IGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNG 214 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLF 177 SS + S+ AS ALM +G+P + PV G + + G+ +L L DED G +D Sbjct: 215 SSS--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFK 272 Query: 178 VSGTQDAVLMVELE 191 V+GT V ++++ Sbjct: 273 VAGTSKGVTALQMD 286 >gi|325998073|gb|ADZ50281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori 2017] Length = 688 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I R + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ K++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR IS + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q ++L + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 KR R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KRAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + ++ ++ + + + ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + ++KEGD++ +++ F ++GK+ L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKLALDL 687 >gi|317178490|dbj|BAJ56278.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori F30] Length = 688 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 258/695 (37%), Positives = 393/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I+ ++V+NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIDNEFVINPNASLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIVFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFGEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|297380394|gb|ADI35281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori v225d] Length = 688 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 258/695 (37%), Positives = 391/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 ERIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|317014601|gb|ADU82037.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Gambia94/24] Length = 688 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/710 (36%), Positives = 400/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I R + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCTERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVGACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ S+ I + R+ + +Y + +++ K++ S HS + Sbjct: 228 QNELLFKESEGIALNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR IS + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q ++L + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 KR R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KRARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVERFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELERYTIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + ++KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKIALDL 687 >gi|317180940|dbj|BAJ58726.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori F32] Length = 688 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 257/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQAISSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I+ ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQRSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|317182464|dbj|BAJ60248.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori F57] Length = 688 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 258/710 (36%), Positives = 397/710 (55%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL LS + V ++ I ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIVFNERLLDLLKNQYFGEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKVPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVTPDKIVEIIGQGGRVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|317177956|dbj|BAJ55745.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori F16] Length = 688 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 396/710 (55%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + + HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMALSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL LS + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG VIR IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVAPDKIVEIIGQGGHVIREIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|210135372|ref|YP_002301811.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori P12] gi|257096695|sp|B6JN53|PNP_HELP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|210133340|gb|ACJ08331.1| polynucleotide phosphorylase [Helicobacter pylori P12] Length = 688 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL L+ Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I+ ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L+A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLEAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQAIVLN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAK R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687 >gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus cuniculus] Length = 784 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 246/710 (34%), Positives = 402/710 (56%), Gaps = 30/710 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239 ++M+E A + + AI G + +I+ I +L + + + P + I S + K Sbjct: 226 IVMLEASAENILQQDFCHAIKVGMKHTQQIIQGIQQLVREIGVTKRTPQKLFIPSPEIVK 285 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++ M K + + +K R + ++ ++ + + EI+ F + Sbjct: 286 YAHKLA-MEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVA 344 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358 +V R ++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + E Sbjct: 345 KEVFRNIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLES 404 Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 ++ +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++PV+P+ Sbjct: 405 SIKSDRITTAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIPK 464 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------- 468 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS PVAG+A+GLV Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKNNSEKG 522 Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + Sbjct: 523 DIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 582 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL M+K LS+ R E P +E + +P + IG GG ++ + +TG ++ Sbjct: 583 KEILQIMNKTLSKPRASRKENGPIIETVQVPLSKRAKFIGPGGYHLKKLQAETGVTISQV 642 Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642 D+ T I + + + + ARE I I E +Y + ++ D G V + Sbjct: 643 DEETFSIFAPTPSAMHEAREFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 702 Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 703 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|308063994|gb|ADO05881.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Sat464] Length = 688 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/695 (36%), Positives = 392/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ +Q I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKENQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ ++R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687 >gi|317012994|gb|ADU83602.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori Lithuania75] Length = 688 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + K F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEKAFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K+ R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KKAREHILKIMHEAKEKIVINFSNL-PATEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|317009891|gb|ADU80471.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori India7] Length = 688 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 253/695 (36%), Positives = 392/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCAERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL L+ Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 RIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIVFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIGLSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + GLL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKEARKHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 SLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 + ++ + + + ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|254779759|ref|YP_003057865.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori B38] gi|254001671|emb|CAX29876.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Helicobacter pylori B38] Length = 688 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 252/696 (36%), Positives = 392/696 (56%), Gaps = 27/696 (3%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCIERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ I+ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ K ++ E + +S+ + L Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESEGIA-L 241 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 E + ++K + + +++ K++ S HS ++ EI E ++ Sbjct: 242 NERLLDLLKNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEKVKK 301 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Sbjct: 302 TEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361 Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 Q +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 362 QTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSD Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 ISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK R HIL M + Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEA 538 Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597 + + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMG 597 Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 + L E + S+ E ++++ + QV +++DFGAF+ +GL+ Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQN 657 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + +VA +KEGD++ +++ F ++GKI L + Sbjct: 658 MDRCQVA-----LKEGDSIKCRVISF-NKGKIALDL 687 >gi|170039801|ref|XP_001847711.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex quinquefasciatus] gi|167863390|gb|EDS26773.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex quinquefasciatus] Length = 759 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/675 (35%), Positives = 384/675 (56%), Gaps = 32/675 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD--FFPLTVNYQERTYAV 70 GR +++ +G+ AR +DG + T G+T V+ T V + G + F PL V+Y+++ A Sbjct: 51 GRVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAA 110 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IP +LRRE P+E EIL +R++DRS+RPLF ++ +TQ++ N++ D + P V + Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMV 188 + AASAAL LS +P+ GPV +V ++ + ++NP E Q +LDL VS T Q+ V+M+ Sbjct: 171 INAASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVML 230 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEE 243 E N ++E+ + AI G E + +I I KL K K EP+ ++ Sbjct: 231 EGRGNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRT 290 Query: 244 MSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 MS+M ++E R F +K+ R + + + + S + S + I F V Sbjct: 291 MSEMRLREIFR--DFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSV 348 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 R ++ ++ R DGR + +R IS+ V + + HGS+LF RG TQ V L ++E Sbjct: 349 FREMVFEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALK 408 Query: 363 VDSLS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 +D ++ G + +F +HY F P ATGE ++G RREIGHG LA + + P++P Sbjct: 409 LDPITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN- 467 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDG 470 P+T+R+ +E+ ES+GSSSMATVC S+ALMDAG+P+ + AG+A+GL+ K Sbjct: 468 -PFTIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHL 526 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D+ IL+D+ G ED+LG MD KVAGT G+TA+Q D+K+ GI +++ +LQ+A R Sbjct: 527 QDYRILTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFK 586 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+ M++ +S R + P + + I P Q ++G GG IR + +TG +++ +D+ Sbjct: 587 ILDLMNESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDE 646 Query: 591 GTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFVH-FCGARD 644 +I + S A + A+E + ++ VP E IY ++V++ D G V + Sbjct: 647 NQFRIFAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSP 706 Query: 645 GLVHISQLSTERVAK 659 L+H SQL +V++ Sbjct: 707 ALLHNSQLDQRKVSE 721 >gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL F2-208] Length = 424 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/402 (49%), Positives = 267/402 (66%) Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 1 EIIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 60 Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 61 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 120 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ I Sbjct: 121 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 180 Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 LSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL + Sbjct: 181 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 240 Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595 + +S R +L + P++ + I P++I++VIG GGK I I+++TG K++I+ DGTV I Sbjct: 241 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 300 Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 AS A A +I I EV ++Y G+V ++ FGAFV DGLVHIS+L+ E Sbjct: 301 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 360 Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 RV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 361 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 402 >gi|213850433|ref|ZP_03381331.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 369 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/348 (54%), Positives = 256/348 (73%) Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 F RG+TQA+V TLGT D Q +D L G + + F+ HYNF P + GE +G+P RREIG Sbjct: 1 FTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIG 60 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HGRLA+R + V+P +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VA Sbjct: 61 HGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 120 Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 GIAMGLVK+GD++++LSDI GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +A Sbjct: 121 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 180 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QAK RLHIL M + ++ R + EF PR+ + I D+I++VIG GG VIR + E+ Sbjct: 181 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEE 240 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640 TG + I+DDGTVKIA++ + + A I IT EV +IY +V +++DFGAFV Sbjct: 241 TGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIG 300 Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 G ++GLVHISQ++ +RV K +D ++ G V VK+L+ D +G+++LS+K Sbjct: 301 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 348 >gi|15645827|ref|NP_208005.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori 26695] gi|81341641|sp|O25812|PNP_HELPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2314375|gb|AAD08258.1| polynucleotide phosphorylase (pnp) [Helicobacter pylori 26695] Length = 688 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 257/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ ++L G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L+A+ +LA+ +E + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLEETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELFFKESQGIVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI I+ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KEARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL L + + K V+KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGL-----LRKQNMDKCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|315587104|gb|ADU41485.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 35A] Length = 688 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/695 (36%), Positives = 391/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL LS Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I+ ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIEWSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V + D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEEQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAK+ R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKKAREHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + D+I +IG GG+VIR IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PATEIFNVTSDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|308184960|ref|YP_003929093.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori SJM180] gi|308060880|gb|ADO02776.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori SJM180] Length = 688 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/710 (36%), Positives = 397/710 (55%), Gaps = 55/710 (7%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + K F+ Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEKAFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286 + E+ SQ I + R+ + +Y + +++ ++ S HS + Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287 Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346 + EI E ++ +R +++ K+R D R E VR I + LL H S LF RG T Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347 Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 Q++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+GHG L Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKIPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407 Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AM Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464 Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 G+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ AL QA Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQA 524 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 K R HIL M + + + P EI + PD+I +IG GG+VI+ IVE+ K Sbjct: 525 KEARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583 Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637 ++++ G VKI + L E + S+ E ++++ + QV +++DFGAF+ Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643 Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 +GL+ + +VA +KEGD++ +++ F ++GKI L + Sbjct: 644 SLPKGGEGLLRKQNMDRCQVA-----LKEGDSIKCRVISF-NKGKIALDL 687 >gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Camponotus floridanus] Length = 689 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/661 (35%), Positives = 378/661 (57%), Gaps = 26/661 (3%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 F PL V+Y+++ A G+IP +LRRE PTENEIL SR+IDRSIRPLF + + +T ++ Sbjct: 15 FLPLIVDYRQKAAAAGRIPTNFLRRELGPTENEILTSRVIDRSIRPLFPEGFYYDTHIMC 74 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-L 174 N++ D + P V+++ ASAAL +S +P+ GPV ++ I+ ++++NP + Q S L Sbjct: 75 NMLAVDGINDPDVIAINGASAALSISDIPWNGPVGAIRIGMIDNEFIINPTRRQIQDSIL 134 Query: 175 DLFVSGTQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 ++ V+ T+ + ++M+E AN++ E + AI G EC+ ++ AI+ L K K I+ Sbjct: 135 NMIVTATKHNLIVMLEGSANEILEQDLKKAIKLGVKECQNIVNAIANLQKAHGKTKRNIE 194 Query: 234 S-KDFSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290 + + + L + ++ + LR S +K R I+DL+ ++ S+++ + Sbjct: 195 TVEQDNNLINSVKELSETKLREIFSNHAHDKISRDNAINDLRNSVIEALKSDNTDLDVKS 254 Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 ++F I + RT++LD VR DGR + +RDIS QV L HGS++F RG TQ + Sbjct: 255 AENIFGKITKDLFRTLILDTDVRCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVMC 314 Query: 351 VVTLGTREDEQYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406 V L + E +D++ SG + +F +HY F P AT E +G RRE+GHG LA Sbjct: 315 TVALDSLESALKMDAMSMLISGVKEKNFFLHYEFPPYATNETGHVGRIGRREMGHGALAE 374 Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 +A+ +LP+ +P+T+R+ SE+ ES+GSSSMATVCG SLAL+DAG+PIS AG+A+GL Sbjct: 375 KALRSILPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALLDAGIPISSSAAGVAIGL 432 Query: 467 V-------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519 V D D + IL+DI G ED+LG MDFK+AGT G TA+Q D+KI G+ I++ Sbjct: 433 VTKYNETNTDIDKYKILTDILGIEDYLGDMDFKIAGTKRGFTALQADVKIPGVPLKIIME 492 Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 L QA + I+ M+ V+ + + + P +E + +P Q +G+GG ++ I+ Sbjct: 493 CLYQAIAAKREIIKIMNDVIRTPQTKKKDKMPVIENLEVPIHQRGKFLGIGGMNLKKILL 552 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFG 634 +TG + D+ T I + + + A+EMI +I E IY ++V++ + G Sbjct: 553 ETGVHIFPHDENTYSIFAPNENAMNEAKEMIENILQKDREPTLEFGAIYTAKIVEIREIG 612 Query: 635 AFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVVD 691 V L+ SQL ++ S + E G + VK D G+I++S KV+ Sbjct: 613 VMVTLHSKMVPTLLPNSQLDQRKIHHPSALGLEIGQEIQVKYFGRDPASGQIRISRKVLQ 672 Query: 692 Q 692 + Sbjct: 673 E 673 >gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] Length = 704 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 256/700 (36%), Positives = 400/700 (57%), Gaps = 51/700 (7%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 +A+ ++G+VL G +V+LA+V + + K DF PL+V Y E+ YA K P G+++RE Sbjct: 20 MAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQYIEKAYASNKFPPGFVKREG 79 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 +P+E EIL SR+IDR++RPLF K YK+ T ++I V+ +D +S + ++ AASAAL +S Sbjct: 80 KPSEFEILTSRLIDRTLRPLFPKGYKHITSIVIWVLSYDGKSDLQLNALNAASAALYVSN 139 Query: 143 LPFE----GPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE------ 191 LP E V G ++ NG +VLNP +++ + LDLFVSG D +LM+E++ Sbjct: 140 LPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFVSGRGDELLMIEMKSIRSEK 199 Query: 192 -ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID----SKDFSKLEEEMSQ 246 AN+LSE ++ A+ + ++ K K+ + ID S + LE+ Sbjct: 200 GANELSERDMILALESAKSYIDRATQSYHKYFAPYKKQSLAIDLSQDSLNTDLLEKIAKN 259 Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA---KVV 303 + L F+ + + + +K+ M E +I + E I+A K+V Sbjct: 260 YHSQILEAITFLAKSESQMQLHSIIKQAM------RECGIEEEKIAT--EHIKAYKKKLV 311 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R ++++ +R DGR + +R IS + +L HGS LF RG TQA+V TLG+ D Q Sbjct: 312 REMIIESAIRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSATLGSENDAQSY 371 Query: 364 DSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 + L + F+ HYNF + GE S +G+ RRE+GHG LARRA+ L T+Q Sbjct: 372 EMLGSKNALKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLARRALESSL--TSQ-DR 428 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 T+R+VSEI ES+GSSSMA+VCG SLAL GV + +AG+AMGLV G+ + IL+DISG Sbjct: 429 TIRLVSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKYAILTDISG 488 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 EDH G MDFKVAG GI+AMQMD+K+GGIS+ I+ +L QAK R IL ++ E Sbjct: 489 LEDHDGDMDFKVAGGYKGISAMQMDIKLGGISKEILEESLLQAKEAREQILG----IMEE 544 Query: 542 SRLQL---GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIAS 597 +R ++ P+ E I P +I VIG GG+VI+ I+E+ ++++ + G V +++ Sbjct: 545 ARAKIVLNHSILPKSESFKIAPHKIVEVIGQGGRVIKDIIERFEVSIDLERESGIVNVSA 604 Query: 598 SSLAEIEAAREMIRSITDVPEVNKI----------YKGQVVKVMDFGAFVHFCGARDGLV 647 S+ + A+ I I + +++ + G++ K+ DFG FV DGL+ Sbjct: 605 SNEDNLAKAKAFILEIVSGAKSDRVDWESYHVGERFVGKIKKIADFGVFVELPRGGDGLL 664 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 HIS++ ++ V++ + ++L ++GK++L + Sbjct: 665 HISKIIKDKNESIHSVLQGKSELECEILS-RNKGKVELGL 703 >gi|108563579|ref|YP_627895.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori HPAG1] gi|123373705|sp|Q1CS51|PNP_HELPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|107837352|gb|ABF85221.1| polynucleotide phosphorylase [Helicobacter pylori HPAG1] Length = 688 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 256/695 (36%), Positives = 390/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++ +Q+ ++L G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVVKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL L+ Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ I ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI I+ AL QAK R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 L E + S+ E ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus norvegicus] gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus] Length = 784 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/710 (34%), Positives = 401/710 (56%), Gaps = 30/710 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V ++ F PL V+Y+++ Sbjct: 47 VTVDLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ ASAAL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DILAINGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239 ++M+E A + + AI G + +I++I +L K + + P I S + K Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVK 285 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 ++ M K + + +K R + ++ ++ + + ++ EI+ F + Sbjct: 286 YTHTIA-MEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQLEIIESFNVVA 344 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358 +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + E Sbjct: 345 KEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLES 404 Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV+P+ Sbjct: 405 SIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPK 464 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKG 522 Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA + Sbjct: 523 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAK 582 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL MSK +S+ R E P VE + +P + IG GG ++ + +TG ++ Sbjct: 583 REILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQV 642 Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642 D+ T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 643 DEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 702 Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 703 TAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pan troglodytes] Length = 783 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/714 (33%), Positives = 401/714 (56%), Gaps = 38/714 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280 Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +++K +++ + +K R + ++ ++ + + EI+ F Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESF 340 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 341 NVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400 Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++P Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV D Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 518 Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 579 SVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVT 638 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 639 ISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 698 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 699 YPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|261839934|gb|ACX99699.1| polynucleotide phosphorylase [Helicobacter pylori 52] Length = 688 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 258/714 (36%), Positives = 399/714 (55%), Gaps = 63/714 (8%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP + +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPSANLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 M+E+ + N L E ++L A+ +LA+ KE + + F+ Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227 Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV--------------RCKQIDDLKKKMVSYFSSE 282 + E+ SQ I + R+ + +Y R +++ KK+ S Sbjct: 228 QNELLFKESQGIVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKI----SEA 283 Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 HS ++ EI E ++ +R +++ K+R D R E VR I + LL H S LF Sbjct: 284 HSEFSLKEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFT 343 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 RG TQ++VV LGT D Q +SL + FM HYNF P GE S +GA SRRE+G Sbjct: 344 RGQTQSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELG 403 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VA Sbjct: 404 HGNLAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVA 460 Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 G+AMG+V +G + ILSDISG ED G MDFK+AG GITAMQMD K+ GI ++ A Sbjct: 461 GVAMGMVSEGQNHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQA 520 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 L QAK+ R HIL M + + P EI + PD+I +IG GG+VIR IVE+ Sbjct: 521 LLQAKKAREHILKIMHGAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEK 579 Query: 581 TGAKVNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDF 633 K++++ G VKI + L E + S+ E ++++ + QV +++DF Sbjct: 580 FEVKIDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDF 639 Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 GAF+ +GL L + + + V+KEGD++ +++ F ++GKI L + Sbjct: 640 GAFLSLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens] gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens] Length = 783 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+ Sbjct: 45 RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278 Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +++K +++ + +K R + ++ ++ + + EI+ Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398 Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516 Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 D D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+Q Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 637 VTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696 Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 679 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 370/665 (55%), Gaps = 49/665 (7%) Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y+ER+YA GKIP + RRE P E EIL R+IDR+ RPLF K + E + VM Sbjct: 2 VDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMAS 61 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178 D P V+++ ASAAL S +P+ GP+ +V +N +++P DE + LF Sbjct: 62 DGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPS-DEVVESSDFTLFY 120 Query: 179 SGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235 +G + LM+E ++N+ L E +V DA+ H + +I P + + Sbjct: 121 AGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIP------------PQIALAN 168 Query: 236 DFSKLEEEMSQM-IKEDLRVSCF--------------IPEKYVRCKQIDDLKKKMVSYFS 280 + K ++E++ + +++ +C+ I +K+ R +++ +L+ ++V Sbjct: 169 EIGKPKQELAAAPVTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELM 228 Query: 281 SEHSSWNE-GEIV-----SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 H W E GE+ S + + +V+R +LD+ VR+DGR +R++ G + Sbjct: 229 DSHPEWMESGEVSEAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPI 288 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGS+LF RG+TQA+ VTLG+ ED Q +D+L+G M+HY+F + E G Sbjct: 289 VHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARGL- 347 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 SRRE+GHG LA +++ V P FP+ +R+ +E ES+GSSSMA VC S+ALMDAGVP Sbjct: 348 SRREVGHGALAEKSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVP 407 Query: 455 ISKPVAGIAMGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 +++ V I++GLV D D+ + ++ DI G ED LG MDFK+AGT SG+T +Q+D Sbjct: 408 LTEHVGAISIGLVMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDC 467 Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K GI +I++ AL +A R +++ M + +SE + + + PR +PP I +I Sbjct: 468 KPAGIPLDILIEALDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLI 527 Query: 568 GMGGKVIRGIVEQTGAKVN-IDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKG 625 G G I+ + ++TGAKV+ ++DDG + + + A +AA I ++ + + EV K Y Sbjct: 528 GPQGSNIKALEKETGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYAT 587 Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 V +V+ FG + DGL+H+S+++ E SDV GD V VK + D RG IK Sbjct: 588 TVKEVLPFGCVLTTASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKW 647 Query: 686 SMKVV 690 S K + Sbjct: 648 SRKAL 652 >gi|298735771|ref|YP_003728296.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8] gi|298354960|emb|CBI65832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8] Length = 688 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/695 (35%), Positives = 393/695 (56%), Gaps = 55/695 (7%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ +++ G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ V ++ AASAAL L+ Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137 Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195 + V ++ ++ ++++NP +Q SLDLFVSGT++++ M+E+ + N L Sbjct: 138 HIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197 Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251 E ++L A+ +LA+ KE + + F+ + E+ SQ I + Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEAFTPHQNELLFKESQGIIFN 242 Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 R+ + +Y + +++ ++ S HS ++ EI E ++ Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEAHSEFSLEEIEWSLEKVKKT 302 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 +R +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362 Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 +SL + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDI Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 SG ED G MDFK+AG GITAMQMD K+ GI ++ AL QAK R HIL M + Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAK 539 Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598 + + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI + Sbjct: 540 EKIVINFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598 Query: 599 SLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 ++ ++ + + + ++++ + QV +++DFGAF+ +GL L Sbjct: 599 KEHVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + + V+KEGD++ +++ F ++GKI L + Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687 >gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Meleagris gallopavo] Length = 864 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 251/714 (35%), Positives = 397/714 (55%), Gaps = 48/714 (6%) Query: 12 AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71 + R ++L +G++AR +DGA + G+T V+ T V ++ F PL V+Y+++ A G Sbjct: 133 SNRKMELSSGKLARFADGAAVVQLGDTAVMVTAV-SKTKPSASQFMPLVVDYRQKAAAAG 191 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 +IP YLRRE T+ EIL SR+IDRSIRPLF Y +TQ++ N++ D + P V+++ Sbjct: 192 RIPTNYLRRELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAI 251 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVE 189 ASAAL LS +P+ GPV +V ++G+ V+NP R +L+L V+ Q+ V+M+E Sbjct: 252 NGASAALALSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLE 311 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------------MCAKEPIVIDSKD- 236 A + + AI G + + +I+ I +L K A E IV +K Sbjct: 312 ATAENILQQDFCHAIKVGVKQTQQIIQGIQQLVKERGVVKRNVQKLFVAPEEIVECAKKL 371 Query: 237 -FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 F+K+ + F +K R + I+ ++ + + EI+ F Sbjct: 372 AFNKIYAVFTD----------FSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESF 421 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + + R ++L++ R DGRD ++RDI +V + + HGS+LF RG TQ + VT Sbjct: 422 NAVSKDIFRNLILNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFD 481 Query: 356 TREDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 + E D ++SG + +FM+HY F P AT E+ ++ +RRE+GHG LA RA+ P Sbjct: 482 SIESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAERALKP 541 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467 V+PQ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S VAG+A+GLV Sbjct: 542 VIPQ--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYD 599 Query: 468 ---KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 +D +D+ +L+DI G ED+ G MDFK+AGT G+TA+Q+D+K+ GI I++ A+QQA Sbjct: 600 LEGRDLEDYRLLTDILGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQA 659 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 + IL M++ L++ R E P VE + +P + +G G ++ + +TG Sbjct: 660 TAAKREILQIMNETLAKPRPNRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVT 719 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH- 638 ++ D+ T + + + + + ARE I + D EVN +Y + ++ D G V Sbjct: 720 LSQLDEETYSVFAPTPSAMHEAREFIGELCKDDQEVNLEFGAVYTATITEIRDSGVMVKL 779 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H SQL ++ S + E G + VK D G+++LS KV+ Sbjct: 780 YPNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 833 >gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Homo sapiens] gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|62988884|gb|AAY24271.1| unknown [Homo sapiens] gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo sapiens] Length = 783 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+ Sbjct: 45 RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278 Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +++K +++ + +K R + ++ ++ + + EI+ Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398 Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516 Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 D D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+Q Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 637 VTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696 Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Callithrix jacchus] Length = 784 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/716 (33%), Positives = 402/716 (56%), Gaps = 38/716 (5%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG+ + G+T V+ TVV Q F PL V+Y+ Sbjct: 45 RAVAVDLGTRKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQ-FMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 ++M+E A + + AI FG + +I+ I +L K I + + KL Sbjct: 224 SQIVMLEASAENILQQDFCHAIKFGVKYTQQIIQGIQQLVK-----EIGVTKRTPQKLFT 278 Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +++K +++ + +K R + ++ ++ + + EI+ Sbjct: 279 PSPEIVKHAHKLTMEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEADPFEIIE 338 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 339 SFNVVAKEVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398 Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ Sbjct: 399 FDSLESSIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV Sbjct: 459 YPVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516 Query: 470 G-------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 DD+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+Q Sbjct: 517 TDPEKGEIDDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAVQ 576 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPIVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637 V+ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 637 VTVSQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696 Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens] Length = 783 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+ Sbjct: 45 RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278 Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 +++K +++ + +K R + ++ ++ + + EI+ Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398 Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 +PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516 Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 D D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+Q Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 637 VTISQVDEETFSVFAPTPSVMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696 Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis] gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis] Length = 710 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/709 (34%), Positives = 383/709 (54%), Gaps = 35/709 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R LK TG++A +DG+ + Y +T VL T + + + F PL V+Y+E+ A I Sbjct: 2 RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENS-FLPLVVDYKEKASAACLI 60 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P +LRR+ E EIL+ R IDRS+R LF K Y +TQ+I +++ D ++P VV++ Sbjct: 61 PTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVNG 120 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192 ASA+L LS +P+ GPV ++ ++GQ V+NP R + LDL V+ ++ ++MVE A Sbjct: 121 ASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGFA 180 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP----IVIDSKDFSKLEEEMSQMI 248 ++ ++ + +AI +E +P+I+AI +L KE I+ S+ S EE Sbjct: 181 KEVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSYN 240 Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + S + R +I L+ + V F + G I F + V R +L Sbjct: 241 RFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFRANIL 300 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367 +K R DGR + +R I + L + HGSSLF RG+TQ T G+ VD++S Sbjct: 301 EKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISE 360 Query: 368 ---GTQRNDFMMHYNFLPCATGEV-SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 G++ FM+HY F P +T EV R G+ RREIGHG LA RA+ PVLP + P+TL Sbjct: 361 AVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLPD--ELPFTL 418 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----------KDGDDF 473 R+ +E+ S+GSSS+A+ C SLA+MDAGVPI VAG A GLV +D D++ Sbjct: 419 RLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNY 478 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 +L+DI G ED+LG MDFK+AGT GITA+Q D K+ G+ I+ A+++ R +L+ Sbjct: 479 QLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRAKVLD 538 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN------- 586 M +V+ +R + P + +P + +IG GG VIR + ++ G ++ Sbjct: 539 VMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVEEEEF 598 Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642 D T A S + E+ + +T IY+G++V++ +G + F Sbjct: 599 LVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLELFADC 658 Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 L+H+ +L RV + + K GD+V VK L D++G++ +S K + Sbjct: 659 PTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRKAL 707 >gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti] gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti] Length = 777 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/705 (34%), Positives = 395/705 (56%), Gaps = 29/705 (4%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD-FFPLTVNYQERTYAVG 71 GR +++ +G+ AR +DG + + G+T V+ T V G + F PL V+Y+++ A G Sbjct: 44 GRVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPKPSGGNNSFLPLVVDYRQKAAAAG 103 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131 +IP +LRRE P+E EIL +R++DRSIRP+F Y+++TQ++ N++ D + P V ++ Sbjct: 104 RIPTNFLRRELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSNLPDVQAI 163 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVE 189 AASAAL LS +P+ GP+ +V ++ + ++NP E Q SLDL V+ Q+ V+M+E Sbjct: 164 NAASAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLSSLDLVVTAAKQNLVVMLE 223 Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQM 247 N ++E+ + AI G E + +I I KL K K +D + ++E + M Sbjct: 224 GRGNVVNENELRMAIKKGTKEAQLIINGIEKLQKSFGKPKRTLDPLPQAAEEIEAAVRTM 283 Query: 248 IKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 + LR F +K R + + + + + S + + + I F V R Sbjct: 284 AEMRLREIFRDFAHDKLSRDQAVTNSRTDTIDKVWSSYPNVDPALITDCFNRFSKTVFRE 343 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++ R DGR + +R IS V L + HGS+LF RG TQ V L + E +D Sbjct: 344 MIFEENRRCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDP 403 Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++ G + +F +HY F P ATGE ++G RREIGHG LA + + P++P + P+ Sbjct: 404 ITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLVPIIPH--EHPF 461 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDF 473 T+R+ +E+ ES+GSSSMATVC S+ALMDAG+P+ + AG+A+GLV K D+ Sbjct: 462 TIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENNDTKHLQDY 521 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 IL+D+ G ED++G MD KVAGT G+TA+Q D+K+ GI +++ +LQ+A R IL+ Sbjct: 522 RILTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFRILD 581 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M + ++ +R + P + + I P Q ++G GG IR + +TG ++N +D+ T Sbjct: 582 IMDETIASARTLKKDCWPVTDQLQIEPHQRSKLVGPGGINIRRLYLETGVQLNQEDEHTF 641 Query: 594 KIASSSLAEIEAAREMIRSITDVP-----EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647 +I + S A + A+E + S+ V E IY ++V++ D G V + L+ Sbjct: 642 RIFAPSEAAMHEAKEYLESLMKVEKIPDLEFGAIYTAKIVELKDTGVMVTLYPSMPPALL 701 Query: 648 HISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 702 HNSQLDQRKIAHPSALGLEVGSEIQVKYFGRDPVSGFMRLSRKVL 746 >gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; Flags: Precursor Length = 783 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/714 (33%), Positives = 398/714 (55%), Gaps = 38/714 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280 Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +++K +++ + +K R + ++ ++ + + EI+ F Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQADPYEIIESF 340 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + +V R ++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 341 NVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400 Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++P Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV D Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 518 Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG Sbjct: 579 SVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVT 638 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 639 ISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 698 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 699 YPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos taurus] gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus] gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus] Length = 783 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/711 (34%), Positives = 400/711 (56%), Gaps = 30/711 (4%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V ++ R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y++ Sbjct: 46 SVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQ 104 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQ++ N++ D + Sbjct: 105 KAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNE 164 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QD 183 P V+++ AS AL LS +P+ GP+ ++ I+G+ V+NP R + +L+L V+G + Sbjct: 165 PDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAPKS 224 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFS 238 ++M+E A + + AI G + +I+ I +L K + + P + + S + Sbjct: 225 QIVMLEASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPEIV 284 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 K +++ M K + + +K R + I+ ++ + + EI+ F Sbjct: 285 KHAHKLA-MEKLYTVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEVDSCEIIESFNIA 343 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 V R+++L++ R DGRD ++R+I+ +V + + HGSSLF RG TQ + VT + E Sbjct: 344 TKDVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLE 403 Query: 359 ----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 ++ + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA RA++PV+P Sbjct: 404 SNFKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAERALYPVIP 463 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---- 470 + FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV Sbjct: 464 K--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPDK 521 Query: 471 ---DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 +D+ +L+DI G ED+ G MDFK+AGT GITA+Q D+K+ GI I++ A+QQA Sbjct: 522 GEIEDYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVA 581 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG ++ Sbjct: 582 KKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQ 641 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641 D+ T I + + + + AR+ I I E +Y + ++ D G V + Sbjct: 642 VDEETFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPN 701 Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ S + E G + VK D G+++LS KV+ Sbjct: 702 MTAVLLHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein [Ornithorhynchus anatinus] Length = 764 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/704 (35%), Positives = 391/704 (55%), Gaps = 36/704 (5%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+++ A G+IP Sbjct: 36 LEISSGKLARFADGCAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPT 94 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 YLRRE ++ EIL SR+IDRSIRPLF Y +TQ++ N++ D + P V+++ AS Sbjct: 95 NYLRRELGSSDKEILTSRIIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLAINGAS 154 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEAN 193 AAL LS +P+ GPV +V ING+ V+NP R + +L+L V+G + V+M+E A Sbjct: 155 AALSLSDIPWNGPVGAVRVGLINGECVINPTRREMASSALNLVVAGAPRSQVVMLEAAAE 214 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLEE---EMSQM 247 + + AI G + +I+ I +L K M + P K F+ E + + Sbjct: 215 NVLQQDFSHAIKVGMKHTQQIIQGIQQLVKEGGMAKRTP----QKLFTAPPEIVKCVQNL 270 Query: 248 IKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305 E + + F +K R + I+ ++ + + EI+ F + +V R+ Sbjct: 271 ATEKIYAVFTDFNHDKISRDEAINKIRLDTEEQLKEKFPEADPFEIIESFNVVSKEVFRS 330 Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD- 364 ++L++ R DGRD ++RDIS +V + + HGS+LF RG TQ + VT + E D Sbjct: 331 IVLNEYRRCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDL 390 Query: 365 ---SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 ++SG + +FM+HY F P AT E+ ++ +RRE+GHG LA +A+ PV+P+ FP+ Sbjct: 391 ITSAVSGVKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALIPVVPK--DFPF 448 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474 T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S VAG+A+GL+ + D+ Sbjct: 449 TMRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKNNSEKEEIEDYR 508 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 +++DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + IL Sbjct: 509 LMTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQATVAKREILQI 568 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M++ +S+ R E P VE + +P + +G GG I+ + +TG ++ D+ T Sbjct: 569 MNRTISKPRASRKENGPVVETVQVPLSRRAKFVGPGGYNIKKLQAETGVTISQVDEETFS 628 Query: 595 IASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648 + + + + A E I I E +Y + ++ D G + + L+H Sbjct: 629 VFAPTPTAMHEAAEFINEICKDDQEQQLEFGAVYTATITEIRDIGVMIKLYSNMTPVLLH 688 Query: 649 ISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 SQL +V S + E G + VK D G+++LS KV+ Sbjct: 689 NSQLDQRKVRHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 732 >gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Mus musculus] gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus] gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus] gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus musculus] Length = 783 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/713 (33%), Positives = 400/713 (56%), Gaps = 36/713 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281 Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + +++I + + F +K R + ++ ++ + + ++ EI+ F Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG + Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus] Length = 783 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/713 (33%), Positives = 400/713 (56%), Gaps = 36/713 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281 Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + +++I + + F +K R + ++ ++ + + ++ EI+ F Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG + Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster] gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster] Length = 721 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/658 (36%), Positives = 372/658 (56%), Gaps = 33/658 (5%) Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 N + T++ G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 48 NGRNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 107 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 108 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 167 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ ++ Sbjct: 168 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 227 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + K M +M ++E + S +K R +++++ ++ S I Sbjct: 228 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 285 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+ Sbjct: 286 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 345 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 346 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 405 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 406 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 463 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 464 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 523 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + +IL+ MS+ + E R E P E + + P Q +IG G ++ I + Sbjct: 524 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 583 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + D+ + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 584 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 643 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 644 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 701 >gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3-5 RNA exonuclease OLD35) [Equus caballus] Length = 784 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/710 (33%), Positives = 402/710 (56%), Gaps = 30/710 (4%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+++ Sbjct: 47 VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFLPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239 ++M+E A + + AI G + +I+ I +L K + + P + I S + K Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFIPSPEIVK 285 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 +++ M + + + +K R + ++ ++ + + EI+ F + Sbjct: 286 HTHKLA-MERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVS 344 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358 +V R+++L++ R DGRD ++R+I+ +V + + HGS+LF RG TQ + VT + E Sbjct: 345 KEVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLES 404 Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 ++ + +++G +FM+HY F P AT E+ ++ +RRE+GHG LA +A++PV+P+ Sbjct: 405 SIKSDRIITAINGVNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIPK 464 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNPDKG 522 Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + Sbjct: 523 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 582 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL M+K +S+ R E P VE + +P + +G GG ++ + +TG ++ Sbjct: 583 KEILQIMNKTISKPRASRKENGPLVETIQVPLSKRAKFVGPGGYHLKKLQAETGVTISQV 642 Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642 D+ T + + + + + AR+ I I E +Y + ++ D G V + Sbjct: 643 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDAGVMVKLYPNM 702 Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 703 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus] Length = 783 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/713 (33%), Positives = 401/713 (56%), Gaps = 36/713 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V ++ F PL V+Y+++ Sbjct: 47 VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281 Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + +++I + + F +K R + ++ ++ + + ++ EI+ F Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG + Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster] Length = 717 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 242/658 (36%), Positives = 371/658 (56%), Gaps = 33/658 (5%) Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 N + T++ G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 44 NGRNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 103 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 104 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 163 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ ++ Sbjct: 164 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 223 Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293 + K M +M ++E + S +K R +++++ ++ S I Sbjct: 224 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 281 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353 F + R ++ ++ +R DGRD + +R+IS QV + + HGS+LF RG TQ V+ Sbjct: 282 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 341 Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 L ++E +DSL+ G + +FM+HY F P ATGEV R+G RRE+GHG LA R+ Sbjct: 342 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 401 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467 + P LP +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV Sbjct: 402 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 459 Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520 K D+ IL+DI G ED++G MD KVAGT G TA+Q D+KI GI +++ + Sbjct: 460 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 519 Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580 LQ+A + IL+ MS+ + E R E P E + + P Q +IG G ++ I + Sbjct: 520 LQKATDAKSKILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 579 Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635 TG + D+ + + S A ++ A+E+I VP E IY ++ ++ D G Sbjct: 580 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 639 Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL ++A S + E G + VK D G ++LS KV+ Sbjct: 640 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 697 >gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus] Length = 748 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/713 (34%), Positives = 395/713 (55%), Gaps = 33/713 (4%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG + G+T V+ T V ++ F PL V+Y+ Sbjct: 11 RAVTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 69 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 70 QKAAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 129 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 130 EPDILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPK 189 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKL 240 ++M+E A + + AI G + +I+ I +L K AK D F + Sbjct: 190 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPAEDIYSFCRD 249 Query: 241 EEEMSQMIKEDL----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + E L ++ I + C QI + S + + ++ EI+ F Sbjct: 250 CEVTKXIAMEKLYAGFQIMNMIKFXGMNCYQI---RLDPRSIYKEKFPEVDQFEIIESFN 306 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 307 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 366 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 367 LESSIKSDQIITAVNGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 426 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG S ALMDAGVPIS VAG+A+GLV + Sbjct: 427 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNP 484 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA Sbjct: 485 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 544 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG + Sbjct: 545 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 604 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 605 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 664 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 665 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 717 >gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus humanus corporis] gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus humanus corporis] Length = 708 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/697 (35%), Positives = 390/697 (55%), Gaps = 37/697 (5%) Query: 21 GRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80 G++A+ +DG T+ +T V+AT V F PLTV++Q++ A+G+IP +LRR Sbjct: 6 GKLAKFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKAAALGRIPLNFLRR 65 Query: 81 ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140 E ENEILISRMIDRS+RPLF + NETQ++ N + D E+ P V+S+ AASAAL + Sbjct: 66 ELGQNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAASAALAV 125 Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDL-FVSGTQDAVLMVELEANQLSED 198 S +P+ GPV +V ++ ++NP + + SL+L VS + V+M+E + + + Sbjct: 126 SNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSKAKHYVVMLEGSCSNILLN 185 Query: 199 VVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLR- 253 +L AI G +EC+ +I +I LA +C K + + S++ EE+ Q I+ E L Sbjct: 186 DLLRAIKKGVSECQKIIISIEHLASLCGKPKKEV---NISEINEELYQSIQMLASEPLNK 242 Query: 254 -VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312 I +K R I +++ + FS + ++N+ +F + +V R +L + Sbjct: 243 IFQNSIHDKLSRDTAISEVRTLIEKKFSDKCENFNQ-----IFSLVCKEVFRNYILINNI 297 Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL----SG 368 R DGR +R+I + L + HGS+LF RG TQ V L + +D + SG Sbjct: 298 RCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLTSG 357 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 + +F +HY F P AT E+ ++G RREIGHG LA +A+ +P+ FP+T+R+ SE Sbjct: 358 LKEKNFFVHYEFPPFATKEIGKLGPIGRREIGHGSLAEKALKANIPE--NFPFTIRLTSE 415 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISG 481 + ES+GSSSMATVCG +LAL+DAGVP+ K AG+AMG+V D D++IL+DI G Sbjct: 416 VLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWDDDKSGIIDYVILTDILG 475 Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 ED+ G MD KVAGT + ITA+QMD+K G+ I++ ++ QAK+ L M K + Sbjct: 476 IEDYFGDMDMKVAGTKNHITAIQMDVKTPGLPIKIVMESITQAKQAISTTLTRMFKDVDL 535 Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601 + + P +E + +P +Q IG GG I+ +TG ++ ++ G +I +++ Sbjct: 536 QKKVKKDNWPVIEKLNVPVNQRAKFIGPGGINIKNFEMKTGVEITEENLGEFQIFAANKE 595 Query: 602 EIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTE 655 + A ++I + V E IY + ++ + G V A + L+ ++QL + Sbjct: 596 ALNEAMKIINEKINSQKEPVLEFGAIYTATITEIREHGCMVILYPAMQPVLIPVTQLDHK 655 Query: 656 RVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 +V+ S + +K GD VK D G ++LS KV+ Sbjct: 656 KVSHPSALNLKVGDQFKVKYFGRDPISGYMRLSRKVL 692 >gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Macaca mulatta] Length = 754 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/656 (34%), Positives = 373/656 (56%), Gaps = 36/656 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 W R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+++ A Sbjct: 17 WQ-RKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAA 74 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P V++ Sbjct: 75 GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDVLA 134 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMV 188 + AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + ++M+ Sbjct: 135 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 194 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248 E A + + AI G + +I+ I +L K I + + KL + +++ Sbjct: 195 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVK-----EIGVTKRTPQKLFTPLPEIV 249 Query: 249 KEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299 K +++ + EK R + I+ ++ + + EI+ F + Sbjct: 250 KHTHKLAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVA 309 Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358 +V R+++L++ R DGRD ++R+IS +V + HGS+LF RG TQ + VT + E Sbjct: 310 KEVFRSIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLES 369 Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415 +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++PV+P+ Sbjct: 370 SIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPK 429 Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VAG+A+GLV D Sbjct: 430 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKG 487 Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + Sbjct: 488 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 547 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 IL M+K +S+ R E P VE + +P + +G GG ++ + +TG ++ Sbjct: 548 KEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 607 Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF 639 D+ T + + + + + AR+ I I E +Y + ++ G + Sbjct: 608 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRKLGILIKL 663 >gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus] Length = 783 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/713 (33%), Positives = 399/713 (55%), Gaps = 36/713 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281 Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + +++I + + F +K R + ++ ++ + + ++ EI+ F Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K +S+ R E P VE + +P + +G GG ++ + +TG + Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + AR+ I E +Y + ++ D G V + Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFNTEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 784 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/713 (33%), Positives = 401/713 (56%), Gaps = 36/713 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y+++ Sbjct: 47 VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GP+ ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFS--- 238 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 226 IVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTP----QKLFTPSP 281 Query: 239 KLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 ++ E ++ E L + + +K R + ++ ++ + + EI+ F Sbjct: 282 EIVEHTHKLTMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLREKFPEADTYEIIESFN 341 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + ++ R+++L++ R DGRD ++R+I+ +V + + HGS+LF RG TQ + VT + Sbjct: 342 VVAKEIFRSIILNEYKRCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++PV Sbjct: 402 LESSMKSDQIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPV 461 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 462 IPK--DFPFTVRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNP 519 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ +L+DI G ED+ G MDFK+AGT GITA+Q D+K+ GI I++ A+QQA Sbjct: 520 DKGEIEDYRLLTDILGIEDYNGDMDFKIAGTTKGITALQADIKLPGIPIKIVMEAIQQAS 579 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + I+ M+K +S+ R E P VE + +P + +G GG ++ + +TG V Sbjct: 580 VAKKEIIQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTV 639 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T + + + + + AR+ I I E +Y + ++ D G V + Sbjct: 640 SQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 700 PNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752 >gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC 49179] gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC 49179] Length = 679 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/676 (36%), Positives = 375/676 (55%), Gaps = 23/676 (3%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82 IA+Q+ A+L + V+LAT++ D++ + ++F PL+V++ +R YA+G+IPGG+ +RE Sbjct: 15 IAKQATSALLYRHKGCVILATIMVDKACVE-ENFLPLSVHFSQRAYAIGRIPGGFNKREG 73 Query: 83 RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142 + +E E L SR IDRS+RPLF+K Y + TQ+ + V+ HD +S V ++ AA+ AL L+ Sbjct: 74 KLSEFETLTSRAIDRSLRPLFAKDYAHPTQITLLVLSHDQQSDLQVCALHAAANALYLAN 133 Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ-LSEDVV 200 L E V +V I G+ V NP E Q S L+L+VSGT +A+LMVE+ + + L E + Sbjct: 134 LGIEN-VAAVRVGRIGGKIVYNPNATELQKSDLNLYVSGTSEALLMVEMHSQESLPEATL 192 Query: 201 LDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMSQMIKEDLRV 254 LD + + K K P+ I++ L++ Q I E ++ Sbjct: 193 LDLLEKAQKHIRENCLQFQKSFAPHRKAPLAINTPTPPNPTLELLLKQHFHQQILE-IKT 251 Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314 E+ V L + + S+ +I E + +R +L K R Sbjct: 252 QMAKSEREV---DFAHLTTAIAHTLQEKGHSYTFEQIQRSLERYTHQCIREEILHTKTRP 308 Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374 DGR ET+R IS + LL HGS+LF RG TQA+VV T+G D + ++L G + F Sbjct: 309 DGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKERF 368 Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 M HYNF P + GE + + AP RREIGHG LA+ A+ + ++ Q T+R+VSEI ES+G Sbjct: 369 MFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGSILESDQ---TIRLVSEILESNG 425 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 SSSMA+VCG SLAL +G+ + +AG+AMGL+ G++ ILSDIS ED G MDFK+A Sbjct: 426 SSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAILSDISALEDMQGDMDFKIA 485 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 G G+ A+QMD KI G+S ++ LQQAK R IL M + + E + + P E Sbjct: 486 GNLEGVVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQAI-EGIMPNTDALPTQE 544 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614 ++PP +I +IG GK I+ I+E+ ++ +D S + A+E I +T Sbjct: 545 SFSVPPKKIATIIGPSGKSIKEIIERFEVQIELDKTSGAVCISGGAQNVLDAKEYILEMT 604 Query: 615 DVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 V ++ + ++ KV+DFG FV D L+H S L + K D E +T+ Sbjct: 605 GFQPYHVEEVLEVEIKKVVDFGIFVRLPRGGDALLHKSHLEKRDLDK--DSFMENNTLEC 662 Query: 673 KLLDF-DDRGKIKLSM 687 +++ DD GKI + + Sbjct: 663 RIIAIHDDSGKIDVDL 678 >gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] Length = 458 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/405 (48%), Positives = 274/405 (67%), Gaps = 2/405 (0%) Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFI 342 ++ N + + F+DI +R +++ VR+DGR + VR +S+QVGLL +R HGS LF Sbjct: 34 ATANSQVLTNTFKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGLLPRRVHGSGLFN 93 Query: 343 RGDTQAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401 RG TQ + TLGT D Q + D L Q ++ HYNF P + GE + AP RREIGH Sbjct: 94 RGLTQVLSACTLGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGH 153 Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 G LA RAI PVLP QFPY +R+VSE+ S+GS+SM +VCGS+LALMDAGVPI+KPV+G Sbjct: 154 GALAERAILPVLPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSG 213 Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521 AMGL+K+G + +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++ AL Sbjct: 214 AAMGLIKEGSEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAL 273 Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 +QAK RLHIL++M + + + R + F PR+ + I PD I VIG GGK I+GI E+T Sbjct: 274 EQAKDARLHILDKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEET 333 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 GAK++I+D G V I++ + + A+ +I+ +T +Y G+V +++ GAFV F Sbjct: 334 GAKIDIEDSGIVTISAIDESRAKRAKSIIQGMTRKLHEGDVYLGRVTRIIPIGAFVEFLP 393 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 ++G++HISQL+ RV K D V G+ V VK+ + D +G+I L+ Sbjct: 394 GKEGMIHISQLADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLT 438 Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 16/204 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-LTVNYQERT---YA 69 RP+ + G + R+ G+ L G T VL+ + D Q L V+ +R Y Sbjct: 73 RPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLG-TPGDAQSLSDDLQVDQSKRYLHHYN 131 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPH 127 G + P EI + +R+I P+ K + +I V+ L S S Sbjct: 132 FPPFSVGETKPLRAPGRREIGHGALAERAILPVLPT--KEQFPYVIRVVSEVLSSNGSTS 189 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD----ED-QGSLDLFVSGTQ 182 + S+ ++ ALM +G+P PV GA + I + D ED G +D V+GT Sbjct: 190 MGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTDIQGIEDFLGDMDFKVAGTD 249 Query: 183 DAV--LMVELEANQLSEDVVLDAI 204 + L ++++ + LS DV+ A+ Sbjct: 250 TGITALQMDMKISGLSLDVIKQAL 273 >gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 728 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 245/694 (35%), Positives = 382/694 (55%), Gaps = 48/694 (6%) Query: 32 LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91 L G+T V+ T V ++ F PL V+Y+++ A G+IP YLRRE T+ EIL Sbjct: 17 LIQLGDTAVMVTAV-SKTKPSASQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILT 75 Query: 92 SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151 SR+IDRSIRPLF Y +TQ++ N++ D + P V+++ ASAAL LS +P+ GPV Sbjct: 76 SRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGA 135 Query: 152 AQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHN 209 +V ++G+ V+NP R +L+L V+ Q+ V+M+E A + + AI G Sbjct: 136 VRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVK 195 Query: 210 ECKPVIEAISKLAK------------MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVS 255 + + +I+ I +L K A E IV +K F+K+ + Sbjct: 196 QTQHIIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTD--------- 246 Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMD 315 F +K R + I+ ++ + + EI+ F + + R ++L++ R D Sbjct: 247 -FSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNAVSKVIFRNLILNEYRRCD 305 Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD----SLSGTQR 371 GRD ++RDI +V + + HGS+LF RG TQ + VT + E D ++SG + Sbjct: 306 GRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKD 365 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 +FM+HY F P AT E+ ++ +RRE+GHG LA RA+ PV+PQ FP+T+R+ SE+ E Sbjct: 366 KNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAERALKPVIPQ--DFPFTIRVTSEVLE 423 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-------KDGDDFIILSDISGDED 484 S+GSSSMA+ CG SLALMDAGVP+S VAG+A+GLV +D +D+ +L+DI G ED Sbjct: 424 SNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDILGIED 483 Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 + G MDFK+AGT G+TA+Q+D+K+ GI I++ A+QQA + IL M++ L++ R Sbjct: 484 YYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKPRP 543 Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 E P VE + +P + +G G ++ + +TG ++ D+ T + + + + + Sbjct: 544 NRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVTLSQLDEETYSMFAPTPSAMH 603 Query: 605 AAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVA 658 ARE I + D EVN IY + ++ D G V + L+H SQL ++ Sbjct: 604 EAREFIGELCKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHNSQLDQRKIK 663 Query: 659 KTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 S + E G + VK D G+++LS KV+ Sbjct: 664 HPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 697 >gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia malayi] gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia malayi] Length = 752 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/689 (35%), Positives = 377/689 (54%), Gaps = 34/689 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 ++ ETG IAR +DGAV+ + GET VLATVV S D DF PLTV++Q+ AVG+IP Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 YLRRE + + +IL SRMIDRSIRPLF K Y ETQ+I + D + P ++ + AA Sbjct: 105 MNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAA 164 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA--VLMVELE 191 SAAL LS +P+EGP+ +V IN + V+NP R + S+DL ++G + +LM++++ Sbjct: 165 SAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRILMIDMD 224 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEM 244 ++ + + I G +I+AI+K+ C + E I I D L EEM Sbjct: 225 GCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDI---DLIALTEEM 281 Query: 245 SQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 + + L ++ +K R + + +L +++ F S ++ F ++ + Sbjct: 282 HVLCGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKFKERSSPH---KLRHTFRNLLKRS 338 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 +R + + R DGR +R ++ ++ + + HGS+LF RG TQ VT Sbjct: 339 LREALFKSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQ 398 Query: 363 VDSLS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D+LS Q+ FM+HY F AT +S SRRE+GHG LA +A+ ++P Sbjct: 399 PDALSQLLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIPD--D 456 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476 FPY LR+ ++ ES+GSSSMA+VC LAL+DAGV I P AGIAMGL+ ++ +D+ IL Sbjct: 457 FPYCLRLACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDYRIL 516 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 +DI+G ED G MDFK+AGT G TAMQ+D+K+ GI+ ++ +L+QA+ G H+L M Sbjct: 517 TDINGLEDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQLMK 576 Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596 K SR Q P E + + + + GG + I +TGAK++I+DD + I Sbjct: 577 KAQPVSRDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNISIF 636 Query: 597 SSSLAEIEAAREMIRSITDVPE-----VNKIYKGQVVKVMDFGAFVHFC-GARDGLVHIS 650 + + ++E A+ M+ + + +YK ++ ++D G V G + L+ S Sbjct: 637 APNKVKLEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILLKNS 696 Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFD 678 L VA + K G + ++ L D Sbjct: 697 NLDVRNVAHAKVLGFKVGQKIIIQYLGRD 725 >gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC 39149] gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC 39149] Length = 548 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/532 (40%), Positives = 316/532 (59%), Gaps = 29/532 (5%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 + R + TGR+ARQ+ G+V+A GETVVL+ + K+ DFFPLTV+ +ER YA Sbjct: 20 FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130 G+IPG + RRE RP+E+ IL R+IDR +RP F K +NE QV+ ++ D + VV+ Sbjct: 80 GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139 Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----DA 184 + AAS + LSGLPF GP+ ++ +++GQ+V P +E + + D+ V+G A Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELARATFDMVVAGRALADGDVA 199 Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228 ++MVE EA + + +V D + G KP I A S LA++ AK Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSVLAEVAAKPVAEF 259 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288 P+ +D + + ++ +++ ++ + I K R +D +K ++ E Sbjct: 260 PVFLDYQ--PDAYDAVAGLVRVEVAEALKIAGKADREGALDRIKARVAEELGGRFEG-RE 316 Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348 E+ + F + VR +L ++VR+DGR +R +SA+VG+L R HGS+LF RG+TQ Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376 Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 + V TL EQ +D+LS + +M +YNF P +TGE R+G+P RREIGHG LA RA Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PVLP +FPY +R VSE S+GS+SM +VC S+L L+ AGVP+ PVAGIAMGL+ Sbjct: 437 LIPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496 Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 D D ++ L+DI G ED G MDFKVAGT +TA+Q+D K+ GI ++ Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDV 548 >gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum] Length = 746 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/705 (34%), Positives = 403/705 (57%), Gaps = 30/705 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVGKIP 74 ++ ETG +AR +DGA + + G+ +LAT V +R S F PLTV++++ AVG+IP Sbjct: 44 IQFETGHLARFADGAAVVSQGDNAILATAVGERDSSSSTTSFLPLTVDFKQSAAAVGRIP 103 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 YLRRE + ++ +IL SR+IDRSIRPLF + Y++ TQVI + D V+ + AA Sbjct: 104 TNYLRREMQQSDADILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGVVLGINAA 163 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA--VLMVELE 191 S AL +S +P+ GPV +V I+ + V+NP +E + L++ +SG D VLM++++ Sbjct: 164 STALAVSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAKLNMVLSGCGDGKRVLMIDMD 223 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKE 250 A +++ + + G + AI K+ K + + + + L EE++++ E Sbjct: 224 ACEVNAVKLDECFEAGLEAVARITAAIEKIVSEAGKIKRELAAPEVDEALIEEVAKLSSE 283 Query: 251 DLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 L +S +K R I +L ++++ F+ E S I +F + K +R ++L Sbjct: 284 RLYYILSDTSHDKTSRDVAIAELGDEVLAAFTDESPSV----IRQIFSSLTKKTLREMVL 339 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367 + VR DGR R I+ +V L ++ HGS+LF RG TQ + VT + DS+S Sbjct: 340 ETSVRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQ 399 Query: 368 --GTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 G QR FM+HY F P A E+S +RRE+GHG LA +A+ ++P+ FPY++R Sbjct: 400 LLGAQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHGALAEKALQHLIPE--NFPYSVR 457 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482 + ++ ES+GSSSMA+VC SLAL+DAGVP+ P AG+A+GL+ + D + +L+DI G Sbjct: 458 LACQVLESNGSSSMASVCVGSLALLDAGVPLKAPAAGVAIGLITNSDASQYKLLTDILGI 517 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED+ G MDFK+AGT +G+TAMQ+D+KI GIS ++ A+ + + G ++L+ M K Sbjct: 518 EDYAGDMDFKIAGTSNGLTAMQLDLKIAGISRQLLNEAISRGREGIAYVLSLMEKAQKAP 577 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 R + + P E ++IP + + G ++ I +TG K++++DD + + + + A Sbjct: 578 RAEFKDSVPITENVSIPIFRRHILFRSGAYNVKLIEAETGVKISLEDDANICLTAPNRAR 637 Query: 603 IEAAREMIRSI----TDVPEVN--KIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTE 655 +E A+EM+ + +D+ E+N +YK ++V++++ G V G R + S L Sbjct: 638 LEEAKEMMERLFADESDI-ELNFGALYKAEIVEILESGVMVTLKKGMRPMFLKNSNLDAR 696 Query: 656 RVAKTSDVVKE-GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 RVA S + E G + V+ L D G ++S K + Q+T P+ Sbjct: 697 RVAHASALGLEVGSMITVQYLGRDATTGHHRISRKTL-QSTTLPV 740 >gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] Length = 981 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/708 (34%), Positives = 386/708 (54%), Gaps = 44/708 (6%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74 PL L TG +A+ +DG A G+T V+ T V ++ F PLTV+Y+++ A G+IP Sbjct: 235 PLILSTGELAKLADGCATAQIGDTTVMVTAVSKKN-SSSPGFLPLTVDYRQKAAAAGRIP 293 Query: 75 GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134 +LRRE T+ EIL SRMIDRSIRPLF K + +TQV+ N++ D P V+S+ A Sbjct: 294 TNHLRRERGVTDQEILTSRMIDRSIRPLFPKGFFYDTQVMCNLLAVDGLQDPGVISINGA 353 Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL-MVELEA 192 SAAL LS +P+ GP+ +V I+ + ++NP RLD + ++++ V+GT+ + L MVE A Sbjct: 354 SAALALSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTINMVVAGTKKSNLVMVEASA 413 Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----------PIVIDSKDFSKLE 241 + + + L A+ G E + ++ +I KLA+ KE P ++DS +L Sbjct: 414 DNVLQTDFLKALKAGLKETQIIVRSIEKLAREHGKEKREYEPFGIPSPEILDS--VRRLA 471 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E + D + K+ R +++ +S + + + F + Sbjct: 472 AEQYHAVYTDPTHN-----KFSRDNAASQVREHHISTVREMFPNEDPSLLNDAFSIVAKD 526 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V R ++L++ R DGR+++ +RDI+ V L + HGS+LF RG TQ VT + E Sbjct: 527 VFRKIILEEDKRCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESAL 586 Query: 362 YVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 D + + +FM+HY F P AT E R G +RRE+GHG LA + + PV+P + + Sbjct: 587 RADPVWQEDIREKNFMLHYEFPPYATNETGRTGGINRRELGHGALAEKGLRPVVP--SDY 644 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------- 471 P+T+R+ SE+ ES+GSSSMATVCG SLALMDAGVP+S PVAG+A+G++ + + Sbjct: 645 PFTIRLTSEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDIFTIK 704 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D I++D+ G ED++G MD K+AG+ GITA+Q D+K+ + I+V A+Q + I Sbjct: 705 DHRIVTDLLGIEDYMGDMDMKLAGSKKGITALQTDVKV-PLPMKIIVEAIQAGTAAKSKI 763 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 LN M+ + + R +P E + +P + IG GG ++ + +TG ++ D+ Sbjct: 764 LNIMASSIRKPRDLRKSNSPVTENLEVPVQRRSKFIGPGGYNLKKLRVETGVTISPVDET 823 Query: 592 TVKIASSSLAEIEAAREMIRSI------TDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RD 644 + + + + + A+E I + D+ E IY + ++ D G V A Sbjct: 824 HFSVFAPTPSAMSEAKERIEQLLLEDKEPDL-EFGGIYTATITELRDNGVLVKLYPAMPP 882 Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 L+H SQL +V S + E G + VK D GK++LS K + Sbjct: 883 TLLHNSQLDQRKVNHPSALKMEVGQEIPVKYFGRDPVSGKMRLSRKAL 930 >gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] Length = 734 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 251/674 (37%), Positives = 389/674 (57%), Gaps = 62/674 (9%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 + A +D +V+ G +V+L +V D +DF PL+V Y E+ YA+GKIP G+L++E Sbjct: 47 KYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQGFLKKE 106 Query: 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141 +P++NEILISR+IDRS+RPLF K Y Q+ I VM +D + +M AS L LS Sbjct: 107 GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166 Query: 142 GLPF--EGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE------- 191 +P +G + G +V + ++ L L D + LDLFVSG + V M+E++ Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQSLKTTTQ 226 Query: 192 --------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------ 237 AN++S++ +L+AI N K IE +S L M EP +++ +++ Sbjct: 227 NKDSIIENANEISKNDLLEAI----NLAKKHIETMSMLY-MKHFEPFILEKREYEGSNKL 281 Query: 238 -----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 LE+E + IKE L C + K R Q+ L K++ S H+ E EIV Sbjct: 282 DLALKESLEKEHTDSIKECL---CGMS-KTERHTQLIALIKEI----SQTHNL--EREIV 331 Query: 293 S--VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350 + VF I+ +++R+++L++ R DGR +R+IS + LL +THGS+ F RG TQA+V Sbjct: 332 AKHVFA-IKKEIMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQALV 390 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 TLG++ D Q + + ++ + HYNF P + GE +GA SRRE+GHG LA +AI Sbjct: 391 TCTLGSQNDAQTQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALKAIE 450 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 A P+T+R+VSEI +S+GSSSMA+VCG+SLAL+ A + + VAGIAMGL+ + Sbjct: 451 ---SNVANTPHTIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYES 507 Query: 471 DD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529 ++ F ILSDI G ED G MDFK+AG + G +A+Q+D+KI G+SE+I+ +L+QA+ G L Sbjct: 508 EERFAILSDIMGLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGIL 567 Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID- 588 HIL+ M V + +L P+ E +P I +IG GG+ IR I+ + +NID Sbjct: 568 HILSLMRNVEIKPNYEL---LPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINIDK 624 Query: 589 DDGTVKIASSSLAEIEAAREMI------RSITDVP-EVNKIYKGQVVKVMDFGAFVHFCG 641 D+G V I++++ ++ A+ I + ++P +V + +G V K ++ G V Sbjct: 625 DEGIVHISANNKDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLAQ 684 Query: 642 ARDGLVHISQLSTE 655 +G++ + E Sbjct: 685 GGNGILRTISMQEE 698 >gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Nomascus leucogenys] Length = 778 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 234/714 (32%), Positives = 394/714 (55%), Gaps = 43/714 (6%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 ++M+E A + + AI G + +I+ I +L K + + KL Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280 Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295 +++K +++ + +K R + ++ ++ + + EI+ F Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESF 340 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT Sbjct: 341 NVVTKEVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400 Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++P Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS PVAG+A+GLV D Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTD 518 Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578 Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584 + N + R E P VE + +P + +G GG ++ + + G Sbjct: 579 SGELVSXTNYF-----KPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQLKQGVT 633 Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638 ++ D+ T + + + + + AR+ I I E +Y + ++ D G V Sbjct: 634 ISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 693 Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 694 YPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 747 >gi|323449631|gb|EGB05517.1| hypothetical protein AURANDRAFT_59314 [Aureococcus anophagefferens] Length = 736 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 247/700 (35%), Positives = 386/700 (55%), Gaps = 31/700 (4%) Query: 5 HTVEIEWAG--RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62 H V I+ PL LETGR+ RQ+D AV+A G T V T+ S G DF P++V Sbjct: 40 HAVSIDLGDGHEPLVLETGRLGRQADAAVIAKRGGTTVYTTLCVG-SADGGGDFLPMSVE 98 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 YQER + G+ GGY +R+ R + EIL R+IDR +RP + + Q+I V+ +D Sbjct: 99 YQERYSSTGRTSGGYNKRDGRANDKEILTCRLIDRPLRPTVVDGWCADLQLISWVLSYDG 158 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQV-----DYINGQYVLNPRLDE-DQGSLDL 176 + V+++ AA+AAL LS +P V A+V D +V +P ++E + + + Sbjct: 159 QYPADVLAVQAAAAALQLSTVPTLCDVGCARVVATADDDGAVAFVSDPTVEELEAAAFQI 218 Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236 V D+V+MVE E + + +DV ++A+ + V EAI A ++ I +K+ Sbjct: 219 VVGSGGDSVVMVEAEGDFVGDDVAVEALTRATADAARVGEAIGAWAADL-RDSGAIPAKE 277 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 +K L F + + K+ + L K++++ ++ + + + + Sbjct: 278 AGDRVRPFPADLKAAL-AEAFADDAHR--KKYEALDAKIIAF--ADERGYGKADARRAAK 332 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + K + V+ + R DGR ++ VR I + L HGS++F RG+TQ++ TLG Sbjct: 333 KLTEKCLGDVVRAEGKRSDGRATDEVRPIDVAMRPLPTAHGSAVFTRGETQSLATCTLGD 392 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 ++ +D +R F + Y F P + GE R+GAP RRE+GHG LA +A+ Sbjct: 393 NSMNLRNDDALDDAKPDKR--FYLQYAFPPSSVGETGRVGAPGRREVGHGALAEKALRAA 450 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG-LVKDGD 471 +P FPY++R+ S ITES GSSSMA+VCG LAL+D GVP+ VAG+AMG L+ DG+ Sbjct: 451 MPDKDAFPYSVRVESLITESCGSSSMASVCGGCLALLDGGVPLRCSVAGVAMGVLLADGE 510 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D ++L+DI G ED LG MDFKVAG+ GI+A Q+D+K G+S + A+ QA+ RLH+ Sbjct: 511 DPVVLTDILGVEDALGSMDFKVAGSAEGISAFQLDVKTLGLSAATLGDAMGQARAARLHV 570 Query: 532 LNEM-SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDD 589 L+EM ++ +E L PR + + + P I +IG GG I+G++++ + +++ + Sbjct: 571 LSEMATRGTAEPATTLAPSVPRSKQLQVDPSFIGKIIGKGGATIKGLIDEFALSNIDVSE 630 Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLV 647 G V ++ + A E I ++ V+K Y G VV + +FGAFV F +GL Sbjct: 631 AGLVTVSGLDDEGVAGAVEAITALC----VDKTYAGSVVSIKNFGAFVEFDDFPGLEGLC 686 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 HIS+L+ ERV ++ GD+ VK+L DD K KLS+ Sbjct: 687 HISELALERVRNIEKFIEVGDSFDVKVLAVDDDSK-KLSL 725 >gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 isoform 1 [Canis familiaris] Length = 789 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 230/681 (33%), Positives = 383/681 (56%), Gaps = 30/681 (4%) Query: 36 GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95 G+T V+ T V ++ F PL V+Y+++ A G+IP YLRRE ++ E+L SR+I Sbjct: 81 GDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVI 139 Query: 96 DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155 DRSIRPLF Y +TQV+ N++ D + P V+++ AS AL LS +P+ GP+ ++ Sbjct: 140 DRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIG 199 Query: 156 YINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213 I+G+ V+NP R + +L+L V+G + ++M+E A + + AI G + Sbjct: 200 MIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQ 259 Query: 214 VIEAISKLAK---MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQI 268 +I+ I +L K + + P + + ++ E + ++ E L + + +K R + I Sbjct: 260 IIQGIQQLVKEIGVTKRTPQKLFTPS-PEIVEHIHKLTMERLYAVFTDYEHDKISRDEAI 318 Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328 + ++ + + EI+ F + +V R+++L++ R DGRD ++R+I+ + Sbjct: 319 NKIRLDTEEQLKEKFPEADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCE 378 Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCA 384 V L + HGS+LF RG TQ VT + E ++ + +++G + +FM+HY F P A Sbjct: 379 VDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHYEFPPYA 438 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 T E+ ++ +RRE+GHG LA +A++PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG Sbjct: 439 TNEIGKVTGVNRRELGHGALAEKALYPVIPK--DFPFTIRVTSEVLESNGSSSMASACGG 496 Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTD 497 SLALMDAGVPIS VAG+A+GLV + D+ +L+DI G ED+ G MDFK+AGT Sbjct: 497 SLALMDAGVPISSAVAGVAIGLVTKNNPDKGEIEDYRLLTDILGIEDYNGDMDFKIAGTS 556 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 GITA+Q D+K+ GI I++ A+QQA + IL M+K +S+ R E P VE + Sbjct: 557 KGITALQADIKLPGIPIKIVMEAIQQASVAKREILQIMNKTISKPRASRKENGPVVETVQ 616 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--- 614 +P + +G GG ++ + +TG V+ D+ T + + + + + AR+ I + Sbjct: 617 VPLSKRAKFVGPGGYHLKKLQAETGVTVSQVDEETFSVFAPTPSAMHEARDFITELCKDD 676 Query: 615 --DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTV 670 E +Y + ++ D G V + L+H +QL ++ + + E G + Sbjct: 677 QEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEI 736 Query: 671 WVKLLDFDDR-GKIKLSMKVV 690 VK D G+++LS KV+ Sbjct: 737 QVKYFGRDPADGRMRLSRKVL 757 >gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo abelii] gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii] Length = 703 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 225/665 (33%), Positives = 372/665 (55%), Gaps = 37/665 (5%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 F PL V+Y+++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ Sbjct: 15 FMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLC 74 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174 N++ D + P V+++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L Sbjct: 75 NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTL 134 Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 +L V+G + ++M+E A + + AI G + +I+ I +L K + Sbjct: 135 NLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VT 189 Query: 234 SKDFSKLEEEMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 + KL +++K +++ + +K R + ++ ++ + Sbjct: 190 KRTPQKLFTPSPEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFP 249 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + EI+ F + +V R ++L++ R DGRD ++R++S +V + + HGS+LF RG Sbjct: 250 QADPYEIIESFNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRG 309 Query: 345 DTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400 TQ + VT + E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+G Sbjct: 310 QTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELG 369 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA +A++PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS VA Sbjct: 370 HGALAEKALYPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 427 Query: 461 GIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513 G+A+GLV D D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI Sbjct: 428 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIP 487 Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573 I++ A+QQA + IL M+K +S+ R E P VE + +P + +G GG Sbjct: 488 IKIVMEAIQQASVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYN 547 Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVV 628 ++ + +TG ++ D+ T + + + + + AR+ I I E +Y + Sbjct: 548 LKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATIT 607 Query: 629 KVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKL 685 ++ D G V + L+H +QL ++ + + E G + VK D G+++L Sbjct: 608 EIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRL 667 Query: 686 SMKVV 690 S KV+ Sbjct: 668 SRKVL 672 >gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium HF0770_09E07] Length = 442 Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 197/445 (44%), Positives = 281/445 (63%), Gaps = 8/445 (1%) Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302 M ++ DL + +K R +++ +K ++ E H + + F++++ V Sbjct: 1 MGLWVRGDLVDAFTTTDKKERNEKVSSIKDNLMQDLDEELHDLYTK-----QFKEVEKDV 55 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR +L+ + R+DGR VRDI+ + L HGS+LF RG+TQAIV TLG+ D Q Sbjct: 56 VRGNVLNDQKRIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQT 115 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 VD+L G +++FM+HYNF + GE+ P RREIGHG LA+R++ +P FPY Sbjct: 116 VDALQGEIKDNFMLHYNFPSYSVGELGFPMGPKRREIGHGALAKRSLKFGVPSLEDFPYA 175 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 +R+VSEITES+GSSSMA+VCG SLALM AGVPI + VAG+AMGL+K+GD + +L+DI GD Sbjct: 176 IRVVSEITESNGSSSMASVCGGSLALMAAGVPIKENVAGVAMGLIKEGDKYEVLTDILGD 235 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 EDHLG MDFKVAGT +G+T +QMD+KI GI+E I+ AL QAK R+HIL +M VLS+ Sbjct: 236 EDHLGDMDFKVAGTKNGVTGLQMDIKIEGINEEILEKALMQAKDARMHILEKMDAVLSKP 295 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 L+L P + D+++ VIG GG I+G+ E+ G + + D G V + + + Sbjct: 296 -LELTSLAPSFTKFKVHKDKVKVVIGKGGSTIKGLQEEFGVTIELQDSGEVSVFAENKEI 354 Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 A+E I + PE K+Y G V KV++FGAFV +DGL+HISQ E +D Sbjct: 355 ANQAKEKIELLCAEPEEGKVYDGVVAKVVEFGAFVTIMPGKDGLLHISQFK-EDFEHLTD 413 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687 V+ EGDT+ VKL++ +G++KL Sbjct: 414 VINEGDTIKVKLVEVGRQGRLKLEF 438 >gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1] gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5] gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5] gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1] Length = 672 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 242/661 (36%), Positives = 357/661 (54%), Gaps = 40/661 (6%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 IE G+ K++ +A+ +D A+L Y TV+LA+VV DR + DF PL+V Y +R Y Sbjct: 4 IEINGQEFKIDY--VAKTADSALLYRYKGTVILASVVVDRQHTEA-DFLPLSVQYAQRAY 60 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 AVG+ P +LRRE + E L SR+IDRS+RPLF K Y TQ+ + V+ +D +S V Sbjct: 61 AVGRFPSNFLRREGKMDNFETLTSRLIDRSLRPLFPKGYTYPTQITLLVLSYDYQSDLQV 120 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMV 188 ++ AAS AL L+ + + + + +NG + SLDL V G +A+LM+ Sbjct: 121 CALNAASNALYLANIGVDTTIHAMR---LNG--------TDTAKSLDLLVVGNAEAILMI 169 Query: 189 ELE-----ANQLSEDVVLDAIIFGHNE----CKPVIEAIS---KLAKMCAKEPIVIDSKD 236 E++ + L E +LD I H + C + K + K+PI ++ Sbjct: 170 EMQIKDSSQHALEESKLLDLIRHAHTQIQEYCMHYYHHFTPHRKPKNLSMKDPIKPNTAL 229 Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L +I E + + + R Q+ DL +K+ + E + E+ + Sbjct: 230 IDLLNSRFKAIILE----TSSLMARSERNAQVQDLIQKIAEELNLEGQQVSLEELKLALQ 285 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 +R+ +++K+ R DGR +R I + LL H S LF RG TQA+V TLG+ Sbjct: 286 TCLYAHLRSEIIEKQQRPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGS 345 Query: 357 RED-EQYVDSLSGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 D +Q + + T + FM+HYNF P GE MGA SRRE+GHG LA++A+ LP Sbjct: 346 ENDAKQGLGTYEKTPSKERFMLHYNFPPFCVGEAMPMGALSRRELGHGHLAQKALESTLP 405 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 + Q P +R+VSEI ES+GSSSMA+VC SLAL AG+ I VAG+AMGL+ +GD + Sbjct: 406 E--QHP-VIRLVSEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYA 462 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 ILSDIS ED G MDFK+AGT G+ AMQMD K+ GI + L+QAK+ R IL Sbjct: 463 ILSDISALEDMQGDMDFKIAGTHQGVLAMQMDTKLSGICLEWLGEILKQAKQARTVILER 522 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTV 593 M ++ + + P E IPP +I +IG GGK I+ I+++ ++++D G V Sbjct: 523 MQEIAQIMPIN-TKAMPISESFYIPPSKISALIGTGGKNIKEILQRFAVQIDLDKQSGQV 581 Query: 594 KIASSSLAEIEAAREMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 I A ++A ++ S+ ++P + + V KV+DFG FV G L+H S Sbjct: 582 CIHGIQEAVLKAKDFILESL-EIPSYVAGEQVQAWVKKVVDFGVFVRLSGGGQALLHKSD 640 Query: 652 L 652 L Sbjct: 641 L 641 >gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes LO28] Length = 420 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/419 (45%), Positives = 271/419 (64%), Gaps = 7/419 (1%) Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 2 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 61 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238 GT DA+ MVE A ++SE+ +L+AI+FGH E K + E ++ KE I+ Sbjct: 62 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 121 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294 +LE E+ + ++ + EK R I+++K++++ + ++ NE EI+S + Sbjct: 122 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELE-NESEILSEVAHI 180 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 E I+ +R ++ K+R DGR +R +S++VG+L R HGS LF RG TQA+ V TL Sbjct: 181 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 240 Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + Q +D L + FM HYNF + GE AP RREIGHG L RA+ V+P Sbjct: 241 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 300 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474 +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI PVAGIAMGLVK GDD+ Sbjct: 301 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 360 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 ILSDI G EDH G MDFKVAGT GITA+QMD+KI G+S I+ AL QAK GRLHIL Sbjct: 361 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 419 >gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis] Length = 852 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 245/710 (34%), Positives = 389/710 (54%), Gaps = 41/710 (5%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYA 69 G ETG++AR ++G+ L G T VLA S ++ Q V+Y+E+ YA Sbjct: 129 GHTWAFETGKLARLANGSCLVQCGNTTVLAAATCQLPPWSRREAQSL-QFEVDYREKLYA 187 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 VG+IPG Y +RE E+E+L R I R++RPLF K + + V +V+ D P V+ Sbjct: 188 VGRIPGTYNKREGTAKEHEVLAGRRIGRALRPLFPKGFALDAAVFASVLSADGGCDPEVM 247 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFVSGTQDA-VL 186 ++ +ASAAL+ S +P+ GPV A+V + +GQ V+ P +++ + + LDL V+ T D V Sbjct: 248 AVSSASAALLCSDMPWAGPVAAARVAMLHDGQLVVGPSVEQQEAAVLDLLVAATADGRVT 307 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS---KLE 241 M+E + Q+ E L+A+ + + +I+ +LA+ ++ P + D + K+ Sbjct: 308 MLEADGEQVPETQFLNALHLAVSTTQQLIKPQMQLAEQTRRQTRPTQLSGADPAAAPKVA 367 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------------G 289 E + +++ LR K R + K +++ + S E Sbjct: 368 ELATPLVEAILRDDKLT--KSTRTIALQQAKDSVLARLKANGSFRTEFARVPGSGCVSPA 425 Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 ++ F + + +R + +++ R DGR + VR + +V + HGS+LF RG+TQ++ Sbjct: 426 DLEHAFTAVLSSALRRLAVEEGWRCDGRGAIDVRPVHCEVDSVPVVHGSALFSRGETQSL 485 Query: 350 VVVTLGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408 VT+G R+++Q ++SL G + ++Y+F P A GE S G RRE+GH LA RA Sbjct: 486 CTVTVGRRQEQQKMESLLGGEGVKRLFVNYSFPPFAVGETSTSGM--RREMGHSDLAERA 543 Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 + PV+P FP++LR+ +E S GSSSMA VCG +LAL DAGVP+ VAG+ +GL+ Sbjct: 544 LLPVIPDMQAFPFSLRLNAETLASAGSSSMAAVCGGALALADAGVPLKALVAGVTVGLLT 603 Query: 469 D---GDDFIILSDIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGISENIMVMALQQ 523 + G + +LS ++ G ED LG MD KVAGT GITA Q+D+K+ GG+ I+ A+ Sbjct: 604 ESSWGGELRLLSSVALGMEDQLGDMDLKVAGTSQGITACQLDVKLQGGVPLEILNEAIGL 663 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 A RGR +L M K L E R G P + +P + VIG GG ++ + E+ Sbjct: 664 AARGRAKLLGIMEKALPEKR---GASAPMFGSVKVPEAMMGRVIGSGGANLKDMEERLDV 720 Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHF--C 640 +V++ DDG + + + S +AA I +T + + +Y+G V ++MDFGA V Sbjct: 721 RVDVGDDGVINVFAPSQNGYQAAEARILDLTGESVKEGAVYRGTVTRLMDFGAMVELEPS 780 Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 G R L+HIS++S +RV DV++ G V V + D +G++KLS K V Sbjct: 781 GLR-ALLHISEVSAQRVRSIDDVLQIGQQVEVMCVGRDPKGQVKLSRKAV 829 >gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii] Length = 628 Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 217/618 (35%), Positives = 350/618 (56%), Gaps = 30/618 (4%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L L TG+ AR +DG++ +G T VL T V K +F PL V+Y+++ A G+IP Sbjct: 2 LTLNTGQSARFADGSITGKFGNTSVLVTAVSKG--KSTNNFLPLMVDYRQKAAAAGRIPT 59 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 +LRRE P++ E L SRMIDRS+RPLF Y +TQ++ N++ D ++ P +VS+ AAS Sbjct: 60 NHLRRELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVSINAAS 119 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEAN 193 AAL +S +P GPV +V +++ + V+NP R + + DL VS Q+ V+M+E A+ Sbjct: 120 AALAVSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDLVVSAADQNKVVMLEASAD 179 Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQMIKE-- 250 +S+ AI G E + +I AI LAK+ KE ++ + D + EE+++ +K Sbjct: 180 GISQPNFRHAIKRGVKESQKIITAIKDLAKIYGKEKRRLVQAVD---VPEEIAESVKSLA 236 Query: 251 DLRV----SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 LR+ S + K R ++ +++++V + + F ++ + R + Sbjct: 237 ALRIREIFSDSLHHKISRDMAVNSVREEVVRKLIESNPEVDPSIFQEAFSNLSRSIFRDL 296 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS- 365 + + +R DGR +R I+ V L HGS++F RG TQ + VT + + VD+ Sbjct: 297 IFEYDLRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAI 356 Query: 366 ---LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 ++G + +F +HY F P AT E R G RRE+GHG LA +A+ V+P + FP+T Sbjct: 357 TALMAGMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHGALAEKALKNVIP--SDFPFT 414 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA---GIAMG--LVKDGD-----D 472 +R+ +E+ ES+GSSSMATVCG SLALMDAG +P G+A G L + D D Sbjct: 415 IRLSAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSD 474 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 F +L+D+ G ED++G MDFK AGT G+TA+Q D+K+ G+ +++ A ++A G+ IL Sbjct: 475 FKVLTDLLGIEDYMGDMDFKYAGTSKGVTALQADVKVPGLPLKVIMEAEERAWEGKTEIL 534 Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + M LS+ R +P + + +P + +G+GG +R ++ +TG + D+ Sbjct: 535 SIMWNCLSQHRQAKKNNSPVTQDLQVPVTKRSRFVGLGGYNLRKLMAETGVSITPIDETN 594 Query: 593 VKIASSSLAEIEAAREMI 610 K+ + + + ++ A E I Sbjct: 595 FKVFAPNQSAMDEASEKI 612 >gi|303286903|ref|XP_003062741.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456258|gb|EEH53560.1| predicted protein [Micromonas pusilla CCMP1545] Length = 846 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 222/665 (33%), Positives = 343/665 (51%), Gaps = 41/665 (6%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + ETGR+AR +DGAV+A+ G+ V+ V R FFPL V Y+ER A GKIP Sbjct: 88 IAFETGRLARLADGAVMASMGDNRVMCAAVAAREPDPNAGFFPLNVEYRERASAYGKIPS 147 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 + RRE P + E+L R++DR+IRPLF K ++N+T V V+ D P V+++ AS Sbjct: 148 TFTRREGAPKDREVLAMRVVDRAIRPLFPKAFRNDTSVQAIVLASDRSLDPSVLAVNGAS 207 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEA 192 AAL S +P+ GPV +V +N V+ D+ + +L +GT+D LM+E A Sbjct: 208 AALHASSIPWNGPVGAVRVAVVNDGEVIVTNPDDATRAESEFELLYAGTEDRALMIEASA 267 Query: 193 NQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249 + + E VV A+ H+ K +I +L + KE + + + Sbjct: 268 TKRGGVPEAVVAKALRAAHDAAKLLIAPQRRLRERVGKEKRPLPEEADATAAAAAKLKAL 327 Query: 250 EDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVR 304 R++ I K R + + +LK ++ ++ H + + + ++ +R Sbjct: 328 AVPRLTRLYELKIQSKSERGRMMAELKAEIAEELATSHGMELTPQALDAAYLAASSRAMR 387 Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ +K VR+DGR +R ++A+VG + HGSS+F RG+TQA+ VT+G+ +D Q +D Sbjct: 388 DLVFEKGVRVDGRKLTELRSLAAEVGAIPVVHGSSVFERGNTQALATVTIGSVDDFQRLD 447 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 + G + FM+HY F + E R G SRREIGHG LA +++ ++P +P+ +R Sbjct: 448 APVGPKNKKFMLHYAFPSFSINETPRRGGLSRREIGHGALAEKSLAGMIPDDDAYPFAVR 507 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSD 478 + +E ES+GSSSMA VC SLALMDAGVPI++ V I++GLV D D+ +LSD Sbjct: 508 VNAETLESNGSSSMAAVCAGSLALMDAGVPIAEHVGAISVGLVMDEDEDGNVTRHALLSD 567 Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 I G ED LG MDFK+AGT GIT +Q L +A R +++EM Sbjct: 568 IMGLEDVLGDMDFKIAGTRGGITGIQAP--------------LDEASVARNQVIDEMYAA 613 Query: 539 LSESRL--QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD------- 589 ++ R ++ FTPR + + + +IG G I+ I T AK++I Sbjct: 614 IARPREADEMSAFTPRYATLEMDQKFVGKLIGPQGSTIKNIEATTSAKISIRQAEPAAGE 673 Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 V I + S + A E + +T E Y V+ FG V +GL+H Sbjct: 674 LAARVGIFAPSKDALALAVEQVELLTKEVEKGATYGATVIDTKPFGWIVRAPTGCEGLLH 733 Query: 649 ISQLS 653 +++ S Sbjct: 734 VTEYS 738 >gi|87311732|ref|ZP_01093847.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina DSM 3645] gi|87285516|gb|EAQ77435.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina DSM 3645] Length = 385 Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 176/342 (51%), Positives = 234/342 (68%) Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 +GT DEQ VD L FM+ YNF + GE + P RREIGHG LA R++ PVL Sbjct: 1 MGTSRDEQRVDGLQEEYAKKFMLDYNFPSYSVGECRPIRGPGRREIGHGALAERSVKPVL 60 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473 P +FPYT+R++S+I ES+GSSSMA+VC ++L LM AGVPIS PVAGI++GLVK+GDDF Sbjct: 61 PGPDEFPYTIRVISDILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDF 120 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 I+L+DI GDEDH G MDFK+AGT +GIT +Q+D+KI GIS I+ L+Q++ R+ IL Sbjct: 121 ILLTDILGDEDHFGDMDFKIAGTQNGITGIQLDLKIAGISAEIIKATLEQSRIARIEILR 180 Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 M +S + + + PR+ I P++I +IG GGK IRGI E+TGA +++ +DGTV Sbjct: 181 TMLTTISAPKDEPSIWAPRLLSTKINPEKIGLLIGPGGKTIRGIQEETGATIDVQEDGTV 240 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 +ASS+L EAA +++IT EV KIY+G+V V DFGAFV RDGL HIS+LS Sbjct: 241 LVASSTLEWAEAALARVQAITGEVEVGKIYEGRVTSVKDFGAFVEILPGRDGLCHISELS 300 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 E V +DVVK GD + VK+L D+ ++KLS K +D G Sbjct: 301 NEYVGNVNDVVKVGDMLKVKVLLVDEHDRVKLSHKAIDAPEG 342 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 ++Y +Y+VG+ R P EI + +RS++P+ +E I V+ Sbjct: 23 LDYNFPSYSVGE-----CRPIRGPGRREIGHGALAERSVKPVLPG--PDEFPYTIRVISD 75 Query: 121 DLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GS 173 LES S + S+ AA+ LM +G+P PV G V + ++L + DED G Sbjct: 76 ILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDFILLTDILGDEDHFGD 135 Query: 174 LDLFVSGTQDAVLMVELE 191 +D ++GTQ+ + ++L+ Sbjct: 136 MDFKIAGTQNGITGIQLD 153 >gi|307700019|ref|ZP_07637068.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris FB024-16] gi|307614780|gb|EFN94000.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris FB024-16] Length = 542 Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 210/528 (39%), Positives = 310/528 (58%), Gaps = 31/528 (5%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 ++ R L+ ETG +ARQ+ G+ + T GETVV A + KD DFFPLTV+ +E+ Y Sbjct: 17 KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPG + RRE RP IL +R+IDR +RP F K +NE QV+ VM + + V Sbjct: 77 AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183 V++ A+S + L+GLPF GP+ G ++ I+GQ+V P + +Q + ++ V+G +D Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196 Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228 A++MVE E Q + + ++ G E KPVI + + A + Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256 Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286 P+ D +D E M ++ DL + I +K R + +++ + + E + Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314 Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 E E+ + F+ ++ K+VR +L + R+DGR + +R ++A+V +L R HGS+LF RG+ Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374 Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 TQ + V TL EQ +D+LS +M YNF P TGE R+G+P RREIGHG LA Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 A+ PV+P +FPY +R VSEI S+GSSSM +VC S+L+L++AGVP+ P+AGIAMG Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494 Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508 L+ + G+D F L+DI G ED G MDFKVAGT ITA+Q+D K Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTK 542 >gi|289607403|emb|CBI60808.1| unnamed protein product [Sordaria macrospora] Length = 368 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/384 (46%), Positives = 249/384 (64%), Gaps = 20/384 (5%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFD+ ++ G+ L LETGR+ARQ+DGAV+AT GETVVL V RS+K+GQDFFPLT Sbjct: 1 MFDIKKSTMDLGGKTLTLETGRVARQADGAVIATLGETVVLCAVTAARSVKEGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ A G+IPGG+ +RE TE E L+SR+IDR IRPLF + + NE VI V+ + Sbjct: 61 VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179 D E+ P +V+M+AASAAL +SG+PF GP+ +V YI+G+YVLNP LD+ +G LDL V+ Sbjct: 121 DGENEPDIVAMIAASAALTISGVPFMGPIGAGRVGYIDGEYVLNPTLDQVKEGDLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238 T DAV+MVE EA +LSE+V+L A++F H+ K +++ I LA+ AK+P + D S Sbjct: 181 ATGDAVMMVESEAKELSEEVMLGAVVFAHDASKKIVDCIIDLAEQAAKDPWELAPVADQS 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 ++++ +I +DL + + +K R I+D + + + Sbjct: 241 AAKKKLKSLIGKDLTAAYKLTDKQARQNAINDAALRHATPSPTSR--------------- 285 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 K +R + D + R+DGRD++TVR I A V L R HGS+LF RG+TQAI TLGT++ Sbjct: 286 --KAIRRSISDGR-RIDGRDTKTVRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKD 342 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLP 382 EQ +D L+G FM+HYNF P Sbjct: 343 AEQMIDGLNGLHYERFMLHYNFPP 366 >gi|254479104|ref|ZP_05092456.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium pacificum DSM 12653] gi|214034953|gb|EEB75675.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium pacificum DSM 12653] Length = 333 Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/314 (52%), Positives = 228/314 (72%) Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 M HYNF P + GEV + P RREIGHG LA RA+ PV+P +FPYT+R+VSE+ S+G Sbjct: 1 MHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSNG 60 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 S+S A+VCGS+LALMDAGVPI PVAGIAMGL+K+ D+ +IL+DI G ED LG MDFKVA Sbjct: 61 STSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQGIEDFLGDMDFKVA 120 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 GT+ G+TA+QMD+KI GI +I+ MAL++A++ RL++L +M +V+ E R +L ++ PRV Sbjct: 121 GTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKEPRKELSKYAPRVV 180 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614 M + P++IR++IG GK I I+ +TG K++I++DG + I + +L E A++MI +IT Sbjct: 181 RMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPNLEAGERAKQMIEAIT 240 Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 EV IY G+V+++ FGAFV ++GLVHIS LS +RV + DVVK GD + VK+ Sbjct: 241 KDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVEDVVKVGDNILVKV 300 Query: 675 LDFDDRGKIKLSMK 688 + D G+I LS K Sbjct: 301 TEIDKLGRIVLSRK 314 >gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Harpegnathos saltator] Length = 618 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 198/594 (33%), Positives = 334/594 (56%), Gaps = 30/594 (5%) Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QD 183 P V+++ AS AL +S +P+ GPV ++ IN ++NP R G L++ ++ T Q+ Sbjct: 10 PDVIAINGASTALSISDIPWNGPVGAVRIGMINNDILINPTRRQMQDGILNIIITATKQN 69 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID------SKDF 237 ++M+E AN++ E + AI G EC+ ++ +I KL K C K ++ + + Sbjct: 70 LIIMLEGSANEVLEQDLKKAIKLGVKECQHIVASIMKLQKACGKTKREVEISNQQEADNL 129 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L +E+S+ +D+ S + +K R I+DL+ ++ +++++ N + +F Sbjct: 130 TNLVKELSETKLQDI-FSNYTHDKSSRDNAINDLRSSVIKTLTTDNADVNIKLVEKLFTK 188 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 I V R+++ +K VR DGR +RDIS QV L HGS++F RG TQ + VTL + Sbjct: 189 ITKDVFRSLVFEKNVRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSL 248 Query: 358 EDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 E +D+ +SG + +F +HY F P AT E+ +G RRE+GHG LA + + P++ Sbjct: 249 ESAFKMDAVSMLISGMKEKNFFLHYEFPPYATNEIGPVGRVGRREMGHGALAEKGLRPII 308 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----- 468 P+ +P+T+R+ SE+ ES+GSSSMAT+CG SLAL+DAG+PIS AG+A+GL+ Sbjct: 309 PK--DYPFTIRLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGLLTKYDEA 366 Query: 469 --DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 D +D+ IL+DI G ED+ G MDFK+AGT G TA+Q D+KI G+ I++ +Q A Sbjct: 367 KTDIEDYKILTDILGIEDYFGDMDFKIAGTKRGFTALQADIKIPGVPLKIIMECVQHAST 426 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 + I+ M+KV+ + + P +E + +P Q +G+GG ++ I+ +TG ++ Sbjct: 427 AKTEIIKIMNKVIQTPQQIKKDKMPVLENLEVPIHQRGKFLGVGGTNLKKILLETGVHIH 486 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-FC 640 D+ + + + + A+EMI++I + E IY ++V++ + G V + Sbjct: 487 AHDENFYSMFAPNEDAMAEAKEMIKNILEKDREPTLEFGAIYTARIVEIRETGVMVTLYS 546 Query: 641 GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 L+ SQL R+ S + + G + VK D G+I++S KV+ + Sbjct: 547 NMMPVLLPNSQLDQRRIHHPSALNLAVGQEIQVKYFGRDPVSGQIRISRKVLQE 600 >gi|302852014|ref|XP_002957529.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f. nagariensis] gi|300257171|gb|EFJ41423.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f. nagariensis] Length = 830 Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 186/441 (42%), Positives = 259/441 (58%), Gaps = 39/441 (8%) Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F ++++V+R+++L++ +R DGR +R I+++ GLL RTHGS+LF RG+TQAI V TL Sbjct: 337 FPSVESRVMRSLVLEEGIRADGRRVTDIRPIASRAGLLPRTHGSALFTRGETQAICVATL 396 Query: 355 GTREDEQYVDSLSGTQRND-----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 GT D D++ + +D F + Y+F P + GE R+G P RRE+GHG LA+RA+ Sbjct: 397 GTASDALRADTMRKAEEDDGGEGRFYLQYHFPPSSVGETGRVGGPGRRELGHGELAQRAL 456 Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467 P++P QFPYT+R+ S ITES+GSSSMA+VCG LAL DAGVPI +PVAGIAMGL+ Sbjct: 457 APIVPNQEQFPYTVRLESTITESNGSSSMASVCGGCLALQDAGVPILRPVAGIAMGLILE 516 Query: 468 ---KDGDD----------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 ++ D ++LSDI G ED LG MDFKVAG ITA QMD+K+ GI+ Sbjct: 517 PAAQNPDPESGSGSSSPRHVVLSDILGSEDALGDMDFKVAGDTDSITAFQMDIKVEGITL 576 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV-----------EIMA--IPPD 561 IM AL QA+ GR HIL +M + +L PR+ E+M + P Sbjct: 577 EIMSSALNQAREGRRHILQQMERCSPPPAGRLNAHAPRLLRTMVGGGPRGELMCEEVDPA 636 Query: 562 QIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 +I +IG GG+ I+ + E TG + +D+DG V + S S A E+I + PE Sbjct: 637 KIGAIIGTGGRTIKQLKEVTGVTAIELDEDGRVNVVSPSQEAAARAMELINLLVSDPEPG 696 Query: 621 KIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 + + + V V FG FV C R GLVH+S+L+ + VV GD + V ++ D Sbjct: 697 TVLRQRAVTSVAAFGCFVELCPGRQGLVHVSELADPPPSDVGSVVAVGDKIDVMVMSCDG 756 Query: 680 RGKIKLSMKVV---DQNTGKP 697 GK+ LS + V DQ G P Sbjct: 757 -GKVALSRRAVALLDQGEGYP 776 Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 138/228 (60%), Gaps = 9/228 (3%) Query: 32 LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91 +AT GET++ AT S F PLTVNY ER A G+ GGY++R+ RP ++E+L+ Sbjct: 1 MATCGETMIYATACCSASPTGDGSFLPLTVNYAERFSAAGRTSGGYVKRDGRPRDSEVLV 60 Query: 92 SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151 SR++DR +RP+F K + NETQV+ V+ +D +P +++ AA+AAL++S +P + V G Sbjct: 61 SRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAVAG 120 Query: 152 AQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209 +V + + YV+NP +++ + S LDL V+GT+DA+LM+E + L+E+ +++A+ G Sbjct: 121 VRVGLLPDEGYVVNPTVEQMKVSRLDLMVAGTRDAILMIEGFCDFLTEEQMIEALAVGSQ 180 Query: 210 E----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253 C + + K+ K E +V D LEE + ++ LR Sbjct: 181 AITSLCLQMEDWAKKVGKPKRTESVVSVPDD---LEERVMALVGPQLR 225 >gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis] Length = 445 Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 174/409 (42%), Positives = 260/409 (63%), Gaps = 3/409 (0%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L +ETGR+A+Q+ G+V+A YG+TVVL+T + + G DFFPLTV+Y+ER YAVGKIPG Sbjct: 34 LTVETGRVAKQAGGSVMARYGDTVVLSTATASKEPRPGIDFFPLTVDYEERLYAVGKIPG 93 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RPTE IL SR+IDR IRPLF K ++N+ QV+ V+ D + P +V M+ AS Sbjct: 94 GFIKREGRPTEKAILSSRLIDRPIRPLFPKGFRNDVQVVSTVLSVDQDCPPDIVGMIGAS 153 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194 AL LS +PFEGP+ G V ++G+ ++NPR++E + S + L V+GT+DAV+MVE AN+ Sbjct: 154 CALCLSDVPFEGPIGGVVVGRVDGKLIINPRMEEAEKSDMHLVVAGTKDAVMMVEAGANE 213 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLR 253 + E+ +++AI+FGH E + +++ ++ K K VI K ++++ + + + E + Sbjct: 214 IPEEDMIEAIMFGHQEIQRIVQFQEEMMKTAGKPKREVILHKVNPEIDQAVRRFVGEKML 273 Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313 + P+K R +D +K + V + +G I+ V + + ++VR ++ K R Sbjct: 274 EAIQNPDKLSRQADMDKVKAETVEAILPQFPD-GQGAILEVLDTMVKEIVRKLITVDKQR 332 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373 DGR + +R I+ +VG+L RTHGS+LF RG TQ + V TLGT D Q +D L + Sbjct: 333 PDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVLNVCTLGTISDLQILDGLGVEESKR 392 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +M HYNF + GE M P RREIGHG LA RA+ PV+P P T Sbjct: 393 YMHHYNFPSYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDAVPVT 441 >gi|46201049|ref|ZP_00055817.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum magnetotacticum MS-1] Length = 354 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/348 (49%), Positives = 230/348 (66%), Gaps = 17/348 (4%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+VH EI W GR L LETG+IARQ+DGAVL TYGET VL TVV +S K G DFFPLT Sbjct: 3 MFNVHRKEITWGGRKLVLETGKIARQADGAVLVTYGETSVLCTVVGAKSQKPGIDFFPLT 62 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+ ++NE QV+ V+ H Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179 DLE+ P + ++V SAAL +SGLPF GPV A+V Y+NG+YVLNP + D + LDL V+ Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPKSDLDLVVA 182 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 GT + VLMVE EA QLSED++L A++FGH + VI+AI +LA+ CAK+P D + Sbjct: 183 GTVEGVLMVESEAKQLSEDIMLGAVMFGHRSFQAVIQAIIELAEECAKDPW-----DLPE 237 Query: 240 LEEEMSQMIKE--DLRVSCFIPEKYVRCKQID------DLKKKMVSYFSSEHSSWNEGEI 291 E++ + + D V + E Y K+ D +KKK ++ + G Sbjct: 238 PPAEVAVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAIKKKALALLTEAAEIAVAG-- 295 Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339 + + ++A VVR +L VR+DGRD++TVR I +VG+L R HGS Sbjct: 296 -GILKHLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSG 342 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 23/212 (10%) Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 R + + G + R G+ L G+T + V +G + + +D T ++Y Sbjct: 16 RKLVLETGKIARQADGAVLVTYGETSVLCTV-VGAKSQKPGIDFFPLT------VNYQEK 68 Query: 382 PCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--G 434 A G++ R G PS +E RL R I P+ F +++V + D Sbjct: 69 AFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADG--FRNEVQVVCTVLSHDLEN 126 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 +A + G+S AL +G+P PV +G V +G+ +L+ + GD +D VA Sbjct: 127 DPDIAALVGTSAALTISGLPFMGPVGAARVGYV-NGE--YVLNPLVGDLPK-SDLDLVVA 182 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 GT G+ ++ + K +SE+IM+ A+ R Sbjct: 183 GTVEGVLMVESEAK--QLSEDIMLGAVMFGHR 212 >gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans] Length = 738 Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 234/726 (32%), Positives = 377/726 (51%), Gaps = 55/726 (7%) Query: 5 HTVEIEWAGRP------------LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52 HT E AGR ++L+ G +AR + V+A++G+ V+ATVV +S + Sbjct: 15 HTKEYRLAGREQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQG 74 Query: 53 GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNET 111 PL V Y+ A+G+IP +LRRE ++NEILISR IDRSIRPL Y ET Sbjct: 75 DGSGVPLQVEYRPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY--ET 132 Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE- 169 Q+I + D + ++ + AAS AL +S + GP+ +V G + +NP +E Sbjct: 133 QIICKPLALDENADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEEL 192 Query: 170 DQGSLDLFVS-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 + SL+L V+ + +M+EL+ + S + + A+ + EA+ +L E Sbjct: 193 REASLNLIVAMRKHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDE 252 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHS 284 + S+DFS LE + + +E R+ I + K R +I + +++ + Sbjct: 253 ---LASEDFSGLERLLEETARE--RIYYVITDAGHDKISRDMEIKAIFEEICA--EKAFQ 305 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + + I + + KV+R L +R DGR + R I+ V + ++ HG S+F RG Sbjct: 306 TCEKDAIYRTYSTLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRG 365 Query: 345 DTQAIVVVTLGTREDEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIG 400 TQ + VT + + DS++ G+QR FM+HY F A E + +RREIG Sbjct: 366 QTQVMSTVTFDSPAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIG 425 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA +++ + P A FPY R+ ++ ES+GSSSMA+VCG SLAL DAGVP+ A Sbjct: 426 HGALAEKSLKNLFP--ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAA 483 Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 G+A+GL+ D + + +L+DI G ED+ G MDFKVAGT G TA Q+D+K GG++ Sbjct: 484 GVAIGLISDEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQ 543 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + +LQ A+ G H+L +MS + R Q P ++ M I P + + G + Sbjct: 544 LTESLQAARAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKL 603 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN--------KIYKGQVV 628 I +TG K++ +D+ + + + +++ A +M + DV E N I + ++V Sbjct: 604 IEAETGVKISAEDEAHISLLAQDKEKLQKAMDM---MNDVLESNSTLDFAFGSIVQAEIV 660 Query: 629 KVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDDR-GKIK 684 ++++ G ++ G +R + + LS V + DV +K GD + V D+ G I+ Sbjct: 661 EIIERGVYLTLPGSSRRIFMSNNHLSLNPV-RHPDVLGLKIGDKMSVHWFGRDEHTGNIR 719 Query: 685 LSMKVV 690 LS K + Sbjct: 720 LSRKTL 725 >gi|196007348|ref|XP_002113540.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens] gi|190583944|gb|EDV24014.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens] Length = 741 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 206/663 (31%), Positives = 344/663 (51%), Gaps = 72/663 (10%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 +K G++A +DG+VL G T VL T V R+ F PL V+Y+E+ A GKIP Sbjct: 54 IKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATGKIPV 113 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 + +RE P+E EIL SR IDRSIR F + E Q++ ++M D E +V + Sbjct: 114 NFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDT-IVPAINGG 172 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQ 194 A +V YIN + ++NP R++ Q LDL + + ++M+E A++ Sbjct: 173 AV---------------RVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEGTASE 217 Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ----MIKE 250 L + VL AI +G E + V++A+ K+ + F +L+E + + +I + Sbjct: 218 LPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLT---FYRLDESIKEGAYNLIGD 274 Query: 251 DLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308 + + F +K R + + + + + ++ F + + + ++ Sbjct: 275 QINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNVM 334 Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 K +R DGR +R I A++ + HGSSLF RG++Q Sbjct: 335 TKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ--------------------- 373 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 F P A E+ R+ SRREIGHG LA+ A+ V+ + FP+T+R+ + Sbjct: 374 -----------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTGQ 420 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSDISGD 482 + S+GS+SMA+ CG SLALMDAGVPIS+ +AG+AMGLV + D + IL+DI+G Sbjct: 421 VLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAGI 480 Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 ED+ G MDFK+AG+ GIT++Q D K+ G+S ++ A++++ R +L+ M V+ + Sbjct: 481 EDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDKP 540 Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602 RL + P +I+ +P + +++G+GG I+G+ E+ G +N D+ V I + S Sbjct: 541 RLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAKA 600 Query: 603 IEAAREMIRSI-TDVPE----VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTER 656 + ++ I + D+ E ++IY G++V + +FG + + L+H+SQL R Sbjct: 601 LANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHRR 660 Query: 657 VAK 659 V++ Sbjct: 661 VSR 663 >gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Acromyrmex echinatior] Length = 616 Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 208/597 (34%), Positives = 328/597 (54%), Gaps = 28/597 (4%) Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT- 181 + P V+++ ASAAL +S +P+ GPV ++ I+ + ++NP + Q S L+L V+ Sbjct: 8 NDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNEVIINPTRRQIQDSMLNLIVTAAK 67 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS---KDFS 238 Q+ ++M+E AN++ E + AI G EC+ ++ AI+KL K C K I++ ++ Sbjct: 68 QNLIIMLEGSANEILEPNLKKAIKQGVKECQNIVAAITKLQKTCGKLKRKIETTEQQEDD 127 Query: 239 KLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 L+ + ++ +E L+ S +K R ++DL+ ++ +++ + +F Sbjct: 128 NLKSSVKELSEEKLQDIFSNHTHDKISRDMAVNDLRNSVIETLRNDNVDLDVKLAEKIFG 187 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 I V RT++L+K VR DGR +RDIS QV L HGS++F RG TQ + VTL + Sbjct: 188 KIVKDVFRTLILEKDVRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDS 247 Query: 357 REDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E+ +D+ +SG + +F +HY F P AT E RRE+GHG LA +A+ PV Sbjct: 248 LENALKMDATSMLISGVKEKNFFLHYEFPPYATNETGNSTRVGRRELGHGALAEKALRPV 307 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 LP+ +P+T+R+ SE+ ES+GSSSMATVCG SLAL DAG+PIS AG+A GLV + Sbjct: 308 LPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGLVTKYNE 365 Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 D+ IL+DI G ED+LG MDFK+AGT G TA Q D+KI GI I++ L + Sbjct: 366 TNTQIEDYKILTDILGIEDYLGDMDFKIAGTKGGFTAFQADIKIPGIPLKIIMECLDKTT 425 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 +L I+ M+KV+ R + P V+ + +P Q +G+GG ++ I +TG + Sbjct: 426 NAKLEIIKIMNKVIRAPRQTKKDKMPVVDNLEVPVYQRGKFLGVGGMNLKKIFLETGVHI 485 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639 D+ T I + + + A+E+I I + E IY ++V++ + G V + Sbjct: 486 YPYDENTYSIFAPNEDAMTEAKEIIEGILQKDREPILEFGAIYTARIVEIREVGIMVTLY 545 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694 L+ SQL ++ S + E G + VK D G+I++S KV+ T Sbjct: 546 SNMIPVLLPNSQLDQRKIHHPSALGLEVGQEIQVKYFGRDPVSGQIRISRKVLQAPT 602 >gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus] Length = 647 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 207/622 (33%), Positives = 345/622 (55%), Gaps = 35/622 (5%) Query: 98 SIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SIRPLF Y +TQV+ N++ D + P ++++ AS AL LS +P+ GPV ++ I Sbjct: 1 SIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAVNGASVALSLSDIPWNGPVGAVRIGMI 60 Query: 158 NGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI 215 +G+ V+NP R + +L+L V+G + ++M+E A + + AI G + +I Sbjct: 61 DGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQII 120 Query: 216 EAISKLAK---MCAKEPIVIDSKDFSKLEE--EMSQMIKEDLRVSCFIP---EKYVRCKQ 267 + I +L K + + P K F+ E + +++I + + F +K R + Sbjct: 121 QGIQQLVKEIGVAKRTP----QKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEA 176 Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 ++ ++ + + ++ EI+ F + +V R+++L++ R DGRD ++R+IS Sbjct: 177 VNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISC 236 Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED----EQYVDSLSGTQRNDFMMHYNFLPC 383 +V + + HGS+LF RG TQ + VT + E +Q + +++G + +FM+HY F P Sbjct: 237 EVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPY 296 Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443 AT E ++ +RRE+GHG LA +A+ PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG Sbjct: 297 ATNETGKVTGVNRRELGHGALAEKALCPVIPK--DFPFTIRVTSEVLESNGSSSMASACG 354 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGT 496 SLALMDAGVPIS VAG+A+GLV + D+ +L+DI G ED+ G MDFK+AGT Sbjct: 355 GSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 414 Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556 + GITA+Q D+K+ G+ I++ A+QQA + IL M+K +S+ R E P VE + Sbjct: 415 NKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETV 474 Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-- 614 +P + +G GG ++ + +TG ++ D+ T I + + + AR+ I I Sbjct: 475 KVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRD 534 Query: 615 ---DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDT 669 E +Y + ++ D G V + L+H SQL ++ + + E G Sbjct: 535 DQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQE 594 Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690 + VK D G+++LS KV+ Sbjct: 595 IQVKYFGRDPADGRMRLSRKVL 616 >gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis] gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis] Length = 443 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 186/453 (41%), Positives = 277/453 (61%), Gaps = 27/453 (5%) Query: 107 YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR 166 Y ETQV+I +M HD P ++ +AASAAL +S +PF + +V ++G +++NP Sbjct: 2 YHAETQVMIQLMSHDENVMPDALAGLAASAALAVSDIPFYNLISEVRVARVDGNFIINPS 61 Query: 167 LDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225 ++ S LD+ + + D+V MVE E ++SE +++AI F H K I A KL Sbjct: 62 REQLATSDLDMMIGASMDSVAMVEGEMKEISEAEMIEAIKFAHEAIKIQITAQEKLRA-- 119 Query: 226 AKEPIVIDSKDFSKLE-EEMSQMIKEDLRVSCFIPEKYV-----------RCKQIDDLKK 273 I S + + E E + + ++ + + +KY R ++ ++K+ Sbjct: 120 -----AIGSPAYREYEGEPEDEAVYAKIKAASY--DKYYAIAESASAKSERGEKFAEIKE 172 Query: 274 KMVSYFSSEHSSWNE--GEIVSVF-EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 ++ + F+ E + N E+++ + Q + VR V+L+K R+DGR + +R I +V Sbjct: 173 EVKALFTEEDLAENPDLAELINKYIYKTQKEAVRNVILEKGTRLDGRKTTEIRPIWCEVD 232 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390 L THGS++F RG+TQA+ VTLGT + +D S F +HYNF P +TGE Sbjct: 233 YLPSTHGSAIFTRGETQALATVTLGTSREANQIDLPSEQGEETFYLHYNFPPFSTGEARP 292 Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 + SRRE+GHG LA+RA+ ++P A PYT+R+VSE+ ES+GSSSMATVC +LA+MD Sbjct: 293 LRGTSRREVGHGNLAQRALKNMIP--ADCPYTVRVVSEVLESNGSSSMATVCSGTLAMMD 350 Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 AG+ + KPV+GIAMGL+ DG++F +LSDI GDEDHLG MDFKV GT GITA QMD+KI Sbjct: 351 AGIQMIKPVSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKID 410 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 G+ +IM AL QA+ GRLHIL ++ + L++ R Sbjct: 411 GLRYDIMEQALSQAREGRLHILGKLVETLAQPR 443 Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 RP+ E + + G+ + T GET LATV S + Q P + +E Y Sbjct: 225 RPIWCEVDYLP-STHGSAIFTRGETQALATVTLGTSREANQIDLP-SEQGEETFYLHYNF 282 Query: 74 PGGYLRRESRP----TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 P + E+RP + E+ + R+++ + +V+ V++ + SS + Sbjct: 283 P-PFSTGEARPLRGTSRREVGHGNLAQRALKNMIPADCPYTVRVVSEVLESNGSSS--MA 339 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLFVSGTQDA 184 ++ + + A+M +G+ PV G + I N VL+ L DED G +D V+GT D Sbjct: 340 TVCSGTLAMMDAGIQMIKPVSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADG 399 Query: 185 VLMVELE 191 + +++ Sbjct: 400 ITACQMD 406 >gi|330981096|gb|EGH79199.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 288 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 159/277 (57%), Positives = 207/277 (74%) Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 +LP FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ PVAGIAMGLVK+G+ Sbjct: 2 MLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGE 61 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 F L+DI GDEDHLG MDFKVAGT G+TA+QMD+KI GI+E IM +AL QA RL+I Sbjct: 62 KFANLTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNI 121 Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591 L +M++++ +SR +L P + M I D+IR+VIG GG IR I E+T A ++I+DDG Sbjct: 122 LGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDG 181 Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 ++KI S EAAR+ + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS Sbjct: 182 SIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISM 241 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 LS RV K +D++KEG V V +LD D+RG+IKLS+K Sbjct: 242 LSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIK 278 >gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans] Length = 745 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 214/644 (33%), Positives = 339/644 (52%), Gaps = 42/644 (6%) Query: 5 HTVEIEWAGRP------------LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52 HT E AGR ++L+ G +AR + V+A++G+ V+ATVV +S + Sbjct: 15 HTKEYRLAGREQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQG 74 Query: 53 GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNET 111 PL V Y+ A+G+IP +LRRE ++NEILISR IDRSIRPL Y ET Sbjct: 75 DGSGVPLQVEYRPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY--ET 132 Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE- 169 Q+I + D + ++ + AAS AL +S + GP+ +V G + +NP +E Sbjct: 133 QIICKPLALDENADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEEL 192 Query: 170 DQGSLDLFVS-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 + SL+L V+ + +M+EL+ + S + + A+ + EA+ +L E Sbjct: 193 REASLNLIVAMRKHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDE 252 Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHS 284 + S+DFS LE + + +E R+ I + K R +I + +++ + Sbjct: 253 ---LASEDFSGLERLLEETARE--RIYYVITDAGHDKISRDMEIKAIFEEICA--EKAFQ 305 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + + I + + KV+R L +R DGR + R I+ V + ++ HG S+F RG Sbjct: 306 TCEKDAIYRTYSTLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRG 365 Query: 345 DTQAIVVVTLGTREDEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIG 400 TQ + VT + + DS++ G+QR FM+HY F A E + +RREIG Sbjct: 366 QTQVMSTVTFDSPAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIG 425 Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460 HG LA +++ + P A FPY R+ ++ ES+GSSSMA+VCG SLAL DAGVP+ A Sbjct: 426 HGALAEKSLKNLFP--ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAA 483 Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516 G+A+GL+ D + + +L+DI G ED+ G MDFKVAGT G TA Q+D+K GG++ Sbjct: 484 GVAIGLISDEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQ 543 Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576 + +LQ A+ G H+L +MS + R Q P ++ M I P + + G + Sbjct: 544 LTESLQAARAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKL 603 Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 I +TG K++ +D+ + + + +++ A +M + DV E N Sbjct: 604 IEAETGVKISAEDEAHISLLAQDKEKLQKAMDM---MNDVLESN 644 >gi|291234442|ref|XP_002737157.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 560 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 190/522 (36%), Positives = 301/522 (57%), Gaps = 49/522 (9%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 ++I+ +PLKL TG++AR +DG +A GET V+ T + + F PLTV+++++ Sbjct: 53 IDIQIGDKPLKLSTGKLARFADGCAIAQIGETSVMVTAISKTTPSASSSFLPLTVDFRQK 112 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP +LRRE PT+ EIL SR+IDRSIRPLF + Y ++Q+I N + D + P Sbjct: 113 AAAAGRIPMNHLRRERGPTDFEILTSRVIDRSIRPLFPQGYVFDSQIICNCLAVDGINDP 172 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++S+ AASAAL LS +P+ GPV ++ I+G++++NP RL+ + L+L V+G+ + + Sbjct: 173 DILSINAASAALSLSDIPWNGPVGAVRMGLIDGKFIVNPTRLELIKSKLNLIVTGSKKSS 232 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-----KDFSK 239 ++M+E A + + AI G E +I I L K K+ V+++ +D K Sbjct: 233 IVMLEGSAENILQPEFCKAIKLGIKETNQIINGIESLCKTHGKKKRVVENMLTIPEDILK 292 Query: 240 LEEEMSQ-MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV---SVF 295 +++ I E S + K+ R I +++ + + + + + E E+ F Sbjct: 293 AATNIAKDKIYEVF--SDYSHHKFSRDNAISNIRTECIDRLT---AMFPENEVFLFNEAF 347 Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355 + V R ++LD+ R DGR +RDIS +V + + HGS+LF RG TQ + VT Sbjct: 348 NFLVKDVFRNIILDEDRRCDGRSLTALRDISCEVDMYKPLHGSALFQRGQTQVLCTVTFD 407 Query: 356 TREDEQYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411 + + D+L SG + +F++HY F P AT EV RM A SRRE+GHG LA +A+ P Sbjct: 408 SIDSALKGDALSEIISGIKEKNFLLHYEFPPFATNEVGRMFA-SRRELGHGALAEKALKP 466 Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471 V+P+ +FP+T+R+ SE+ ES+ GVPI+ VAG+A+GLV + Sbjct: 467 VIPK--KFPFTIRLTSEVLESN------------------GVPITAAVAGVAIGLVAKTE 506 Query: 472 --------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505 D+ +++DI G ED++G MDFK+AGT GITA+Q+ Sbjct: 507 DDNRSNITDYRLMTDILGIEDYMGDMDFKMAGTKKGITALQV 548 >gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis] Length = 1172 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 235/739 (31%), Positives = 387/739 (52%), Gaps = 64/739 (8%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPL 59 F++ +V+ + P+ LETG++AR +DG+ +A G T V+ATVV RS F PL Sbjct: 400 FFNMVSVQADVGSVPMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMPL 459 Query: 60 TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK-CYKNETQVIINVM 118 TV+Y+ R AVG+IP +LRRE +++EIL +RMIDRS+RP F + CY + QV +++ Sbjct: 460 TVDYRSRAAAVGRIPTNFLRREIGASDSEILTARMIDRSLRPAFGRDCYV-DCQVSCSLL 518 Query: 119 QHDLESS-PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDL 176 + +++ V+++ AASAAL S + + GPV A+V +++ + VLNP R + +L+L Sbjct: 519 SLEADATGADVLAVNAASAALACSNVVWNGPVACARVCWVDSRPVLNPSRQQLEMSTLNL 578 Query: 177 FVS-GTQDAVLMVELEANQLSE---DVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232 +S G ++MVE D + + + ++AI +LA K V Sbjct: 579 VLSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQLAARAGKPKRVP 638 Query: 233 DSKDFSK----------------------LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270 + L++++ +M D RV+ E +Q D Sbjct: 639 SGQLLPADKPDDLTGAIQLYASATLGELLLDKDLDKM-AFDERVANLRHETADNLRQADC 697 Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330 + + +F F D+ K +R + + R DGR + +R I V Sbjct: 698 FQDDQLRFFDV------------AFNDLLKKALRDQVFNTGHRRDGRTLDELRPIDCSVD 745 Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDE------QYVDSLSGTQRNDFMMHYNFLPCA 384 L HGS+LF RG TQ + +T +R+ ++S T+ FM HYNF A Sbjct: 746 LYPSLHGSALFQRGQTQVMCSLTFDSRQAAFRGDVFSLLNSGGITKEKKFMFHYNFASFA 805 Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444 T E+S RRE+GHG LA +A+ PV+P + FP+T+R+ +++ ES+GSSSMA+VC Sbjct: 806 TNELSSARGIGRRELGHGALAEKALRPVVP--SDFPFTIRLAADVLESNGSSSMASVCAG 863 Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503 SLALMDAGVP V+G+A+GL+ D+ +L+DI+G ED G MDFK+A T +G +TA+ Sbjct: 864 SLALMDAGVPTKSSVSGVAIGLMSK-QDYRLLTDIAGIEDFFGDMDFKIAFTSNGEVTAI 922 Query: 504 QMDMK-IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562 Q+D K +GGI + I A ++ + ++ +M+ L++ R + P E + +P + Sbjct: 923 QLDTKLLGGIDQRIFRQACERGLQANRNVQRKMAACLAKPRAAVKPNGPVEEQLPVPASK 982 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT------DV 616 ++G GG ++ I +TG +++ DD + + + ++ AR+ + + + Sbjct: 983 RSRLLGAGGLNLKRIEARTGVQISQLDDTVYSVFAPNKQAMQQARQSLDQLLADNVEEEQ 1042 Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDG-LVHISQLSTERVAKTSDV-VKEGDTVWVKL 674 E IY+ ++V++ D G V + V SQL + R+A + + + G T+ VK Sbjct: 1043 LEFGAIYETKIVELKDAGLMVQLHPSLAPVFVPNSQLDSRRIAHPATLGFQVGQTLLVKY 1102 Query: 675 LDFDD-RGKIKLSMKVVDQ 692 D G+++LS KV+ Q Sbjct: 1103 FGRDPVTGQMRLSRKVLQQ 1121 >gi|12001940|gb|AAG43113.1|AF058952_1 polynucleotide phosphorylase A [Lactococcus lactis subsp. cremoris MG1363] Length = 425 Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/423 (39%), Positives = 255/423 (60%), Gaps = 11/423 (2%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T IE+AGR L +ETG IA Q +GAV+ YG+T VL + + G DFFPL VNY+E Sbjct: 5 TFSIEFAGRTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYEE 62 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GK PGG+ +RE+RP+ + L +R+IDR IRP+F++ ++NE QVI V+ +D +S Sbjct: 63 KMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENAS 122 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDA 184 V +M +S AL +S +PF+GP+ G +V YI+G+Y++NP + E + SL+L V+G +A Sbjct: 123 GRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNINA 182 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243 + MVE A +LSE+V+L A++ GHN K +IE +++ KE ++ + L+ E Sbjct: 183 INMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKAE 242 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFEDI 298 + DL+ + + EK R +K+ ++S +S+++ + I+ + E + Sbjct: 243 VIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEGM 302 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLGT 356 + VR ++ + K+R DGR + +R + A++ R THG+ LF RG TQA+ +TL Sbjct: 303 EHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAP 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + Q +D L+ + FM HYNF + GE R GAP RREIGHG L RA+ VLP Sbjct: 363 MNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 422 Query: 417 AQF 419 +F Sbjct: 423 EEF 425 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 19/249 (7%) Query: 323 RDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 R ++ + G + ++ +R GDT + T+G + Q N Y Sbjct: 13 RTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMATGDFFP----LQVNYEEKMYAAG 68 Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MA 439 G R PS RL R I P+ + F +++++ + D ++S +A Sbjct: 69 KFPGGFNKREARPSTDATLTARLIDRPIRPMFAEG--FRNEVQVINTVLSYDENASGRVA 126 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 + GSSLAL + +P P+AG+ + + DG +II ++ E ++ VAG + Sbjct: 127 AMFGSSLALAISDIPFDGPIAGVEVAYI-DG-KYIINPTVA--EKEASSLELSVAGNINA 182 Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559 I ++ K +SE +M+ AL + + E+ + +E ++G+ VE++ + Sbjct: 183 INMVESGAK--ELSEEVMLGALLAGH----NAVKELIEFQNEIVAKVGKEKAEVELLHVD 236 Query: 560 PDQIRNVIG 568 D VI Sbjct: 237 EDLKAEVIA 245 >gi|224537711|ref|ZP_03678250.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus DSM 14838] gi|224520634|gb|EEF89739.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus DSM 14838] Length = 467 Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 278/467 (59%), Gaps = 12/467 (2%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 V T+E+ GR + LETG++A+Q+DG+V+ G T++LATV + G DF PL V Y Sbjct: 6 VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 +E+ A G+ PGG+ +RE R ++ EIL R++DR++RPLF Y E V I + D Sbjct: 65 KEKFSASGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGI 124 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182 P ++ +AASAAL +S +PF GP+ +V I+GQ+V+NP D+ ++ +DL V T Sbjct: 125 DIPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVGATY 184 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242 + ++MVE E +++SE +L+A+ H K A +LA+ V +E Sbjct: 185 ENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCLAQKELAEAVGS--TVKREYCHEVNDE 242 Query: 243 EMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E+ + + E + K+ R D ++++ + FS E + I + Sbjct: 243 ELRKAVHEACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELAEKAALIDRYYH 302 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 D++ + +R +LD+ R+DGR ++ +R I +++ L HGS++F RG+TQ++ VTLGT Sbjct: 303 DVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEINCLPGPHGSAIFTRGETQSLSTVTLGT 362 Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416 + DE+ +D++ + F++HYNF P +TGE RRE+GHG LA RA+ +P Sbjct: 363 KLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRALKGQIP-- 420 Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 A +PY +R+VS+I ES+GSSSMATVC +LALMDAGV I +PV+GIA Sbjct: 421 ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIA 467 >gi|308800758|ref|XP_003075160.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus tauri] gi|116061714|emb|CAL52432.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus tauri] Length = 620 Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 203/598 (33%), Positives = 326/598 (54%), Gaps = 27/598 (4%) Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDE--D 170 M D P V+++ ASAALM S +P+ GPV +V I + V++P DE + Sbjct: 1 MASDGGEDPAVLAVNGASAALMASSIPWNGPVAAVRVAIIRDGSGEREIVVSPS-DEVVE 59 Query: 171 QGSLDLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAK-MCA 226 LF +G LM+E ++N+ L E ++ DA+ H + ++ A +LAK M Sbjct: 60 SSDFTLFYAGNDSRTLMIEAQSNKSGGLEESMLADALRVAHRAVRELLPAQIELAKEMGK 119 Query: 227 KEPIVIDSKDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284 + ++ + S+++E + +K L I +K+ R +++ +L+ ++V+ + Sbjct: 120 PKQELVPAAVTSEMKEAVYAAMKTRLLALYEEHIQDKHERGRKMAELQSEVVAELIEANP 179 Query: 285 SWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342 W E + S + ++V+R + D R+DGR +R + GL+ HGS+LF Sbjct: 180 EWAESVDALGSAYFQTCSRVMRERIFDTDTRVDGRGLYDLRALDGVAGLMPIVHGSALFE 239 Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 RG+TQA+ +TLG+ +D Q +D+L+G ++HY+F + E G SRRE+GHG Sbjct: 240 RGNTQALATITLGSLDDSQKLDNLTGPTSKRLILHYSFPSFSVNETGARGI-SRREVGHG 298 Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462 LA +++ V P FP+ +R+ +E ES+GSSSMA VC S+ALMDAGVPI + V I Sbjct: 299 ALAEKSLLGVFPDEESFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPIKEHVGAI 358 Query: 463 AMGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515 ++GL+ D D+ + ++ DI G ED LG MDFK+AGT +G+T +Q+D K GI Sbjct: 359 SIGLIMDEDETTREVKRYKLMDDIMGLEDVLGDMDFKIAGTRTGVTGIQLDCKPMGIPLE 418 Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575 I++ AL +A R +++ M + + + + + PR +IP I +IG G I+ Sbjct: 419 ILIEALDRASAARQKVIDVMERAVKTPKTDVKDSAPRFGRASIPGSLIGKLIGPQGSNIK 478 Query: 576 GIVEQTGAKVNI-DDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDF 633 + + TG+KV + +DDG + I + A +AA I S+ + + EV K Y V VM F Sbjct: 479 ALEKDTGSKVAVLNDDGDLAIFGPNKASYDAALAHIESMKNSIIEVGKTYVTTVKDVMPF 538 Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 GA + DGL+H+S+++ ER +DV GD V VK + + GKIK S K + Sbjct: 539 GAVLITSNGDDGLLHVSEIAHERTENVADVFSVGDVVEVKCVAREGPSGKIKWSRKAL 596 >gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays] gi|219886165|gb|ACL53457.1| unknown [Zea mays] Length = 733 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 184/517 (35%), Positives = 300/517 (58%), Gaps = 20/517 (3%) Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241 M++++A ++SE + + H+E I+ LAK K+ +I + K+ Sbjct: 1 MIDVQAREISERDLQAGMKLAHSEAIKCIDPQISLAKRAGKKKKEYKISLISDTSYEKIR 60 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 I+E S + K+ R ++ + + + + E+ + + + ++ + Sbjct: 61 TFSEAPIEEVFTDSSY--GKFERGGALEKITQSVKAKLEEENDEDSLKFLHKAVDTVRKQ 118 Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361 V+R ++++ +R+DGR + VR + + HGS+LF RGDTQ + VTLG D Q Sbjct: 119 VIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQ 178 Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +DS+ G FM+HY+F P + EV++ G +RRE+GHG LA +A+ VLP + FPY Sbjct: 179 RLDSIVGPPTKRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPY 238 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474 T+R+ +E+ SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV D ++ Sbjct: 239 TVRVNAEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYR 298 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 IL+DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ +L+ A++ R IL+ Sbjct: 299 ILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDR 358 Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M + +S +R +PR+ ++ + +R ++ K I ++TGA+V+I DGTV Sbjct: 359 MDQEISTARGINDGSSPRLATLSFSNESLRKLLFHRKK----IEQETGARVSI-SDGTVT 413 Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I + + ++ A E + + EV + YKG V + ++GAFV F G + GL+HIS+LS Sbjct: 414 IVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELS 473 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + V K SDVV G ++ ++ + D RG IKLS+K Sbjct: 474 HQPVTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKAT 510 >gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae] Length = 721 Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 219/713 (30%), Positives = 371/713 (52%), Gaps = 58/713 (8%) Query: 6 TVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +V +++ G+ L+L+TG +AR + AV+A+ G+ V+ATVV + + + PL V Y+ Sbjct: 27 SVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYR 86 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNETQVIINVMQHDLE 123 AVG+IP +LRRE ++NEILISR IDRSIRPL + Y ETQVI + D Sbjct: 87 PSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY--ETQVICKPLALDEN 144 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSG 180 + ++ + AAS+AL +S PF GP+ +V D + +NP +E S+++ V+ Sbjct: 145 ADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIVAM 204 Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 ++ +M+EL+ + + + +A+ + + A+ +L + KD + Sbjct: 205 RRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELGGI---------EKD--E 253 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDI 298 L E+ + M E L + ++ L ++ + Y ++ + +I + + Sbjct: 254 LPEKTTTM--EILEI-------------LEALARERIYYVMTDTLQPFPPADIYQCWSFL 298 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 KV+R L +R DGR R I QV + ++ HG S+F RG TQ + VT + Sbjct: 299 VKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPT 358 Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + DS++ G+QR FM+HY F AT ++ + +RREIGHG LA +A+ P+ P Sbjct: 359 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHGALAEKALKPLFP 418 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--- 471 FPY +R+ ++ ES+GSSSMA+VCG SLAL DAGVP+ AG+A+GL+ D Sbjct: 419 --TGFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKEPE 476 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 ++ +L+DI G ED+ G MDFK+AGT +G TA Q+D+K G++ + +L A+ G H Sbjct: 477 TNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGIDH 536 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 +L +M+ + R Q P +E M I P + + G + I +TG K++++D+ Sbjct: 537 VLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVEDE 596 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEV-----NKIYKGQVVKVMDFGAFVHFCGARDG 645 + + + S +++ A M+ + + I + ++V+ +F +C Sbjct: 597 SNISLLAPSQEKLQKALSMMNGVLESNTTLDFAFGSIIQAEIVENNEFPDNGPWCVRHTT 656 Query: 646 LVHISQLSTERVAKTSDV-------VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 + ++ +K+S + +K GD + D+ G I+LS K + Sbjct: 657 RKLPTSPYQQQPSKSSSIRHPDVLGLKVGDKMACTWFGRDEHTGNIRLSRKTL 709 >gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 726 Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/400 (41%), Positives = 250/400 (62%), Gaps = 13/400 (3%) Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ +V+R ++ + +R+DGR + VR + + HGS+LF RGDTQ + VTLG Sbjct: 98 VRKQVIRKRIIKEGLRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAP 157 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 D Q +DS+ G FM+HY+F P + EV++ G +RRE+GHG LA +A+ VLP Sbjct: 158 GDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPEG 217 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471 FPYT+R+ SE+ SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D Sbjct: 218 DFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDI 277 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + IL+DI G EDHLG MDFK+AGT GITA+Q+D+K GI +I+ +L+ A++ R Sbjct: 278 SSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIVCESLEPARKARNQ 337 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL+ M + +S +R +PR+ ++ + +R ++ K I + TGA+V++ D Sbjct: 338 ILDRMDQEISTARAINDGSSPRLATLSFSSNSLRKLLFHRKK----IEQDTGARVSV-SD 392 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 GTV I + + ++ A E + + EV K YKG V + ++GAFV F G + GL+HI Sbjct: 393 GTVTIVAKTQPIMDKAIEKVEFLVGREIEVGKTYKGIVSSIKEYGAFVDFNGGQQGLLHI 452 Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 S+LS E V+K SD++ G + + + D RG IKLS+K Sbjct: 453 SELSHEPVSKVSDIISVGQALSLTCIGQDVRGNIKLSLKA 492 >gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri] gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri] Length = 615 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 185/508 (36%), Positives = 278/508 (54%), Gaps = 59/508 (11%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 ++E+E ++LETGR+ Q++GAV+A+ G+TV+ AT R L F PLTVNY E Sbjct: 72 SIELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSE 131 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 R A G+ GG+ +R+ +E E L +R++DR IRP+ K + +TQV+ +M D E S Sbjct: 132 RFSAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERS 191 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDE-DQGSLDLFVSGTQ 182 +++ AASAAL +S +P + PVVG +V + G + ++NP ++ + LDL ++GT Sbjct: 192 TDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGTD 251 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA----KEPIVIDSKDFS 238 +AVLM+E + L+ D +L AI GH + I A+ A E +++ + Sbjct: 252 EAVLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEG-- 309 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV---------------------- 276 ++E + ++ +L + IP K VR I +++ V Sbjct: 310 -VDEAVEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDC 368 Query: 277 ------SYFSSEHSSWNEGEIVSVFEDIQA-------------------KVVRTVMLDKK 311 + FS E G S ++++ A + +R + K Sbjct: 369 ALPIRRNRFSREFVGC--GSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKG 426 Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 R DGR + VR I+ + GLL RTHGS+LF RG+TQAI V TLG +D Q VD + T+ Sbjct: 427 RRQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTED 486 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 FM+HY F P + GE R+G SRRE+GHG LA RA+ P++P +FP+ R+ S ITE Sbjct: 487 KRFMLHYFFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITE 546 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPV 459 S+GSSSMATVC +LAL+DAGVP+ + V Sbjct: 547 SNGSSSMATVCAGTLALLDAGVPLKRYV 574 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATV 441 A G R GA S RE RL R I P++P+ + Y +++ + DG S+ + Sbjct: 140 AGGFRKRDGAVSERETLKARLVDRPIRPMIPKG--WGYDTQVLQWLMSFDGERSTDALAI 197 Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 +S AL + +P+ KPV G+ +GL+ D+ I+ + S ++ +D +AGTD + Sbjct: 198 TAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIV--NPSQEQMKESRLDLVLAGTDEAV 254 >gi|153876840|ref|ZP_02003956.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS] gi|152066696|gb|EDN66044.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS] Length = 255 Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 152/253 (60%), Positives = 189/253 (74%) Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 MA+VCGSSLALMDAGV I PVAGIAMGL+K+ D F++LSDI GDEDHLG MDFKVAGT Sbjct: 1 MASVCGSSLALMDAGVQIKAPVAGIAMGLIKEDDQFVVLSDIMGDEDHLGDMDFKVAGTT 60 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 G+TA+QMD+KI GI+ IM AL QAK GRLHIL+ M + L+E R ++ ++ PR+ Sbjct: 61 DGVTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAEPRQEMSKYAPRIITFH 120 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617 I P++IR VIG GG IR I E+TG VNI+++G V IAS L E AR I +IT Sbjct: 121 IKPEKIREVIGKGGTTIRAIQEETGTTVNINEEGIVTIASVDLVAGEEARRQIETITSDI 180 Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K+Y+G+VVK+MDFGAFV +DGLVHISQ+S ERV K SD +KEG+TV VK+L+ Sbjct: 181 EVGKVYEGKVVKLMDFGAFVTILPGKDGLVHISQISQERVEKVSDKLKEGETVKVKVLEI 240 Query: 678 DDRGKIKLSMKVV 690 D +G+I+LSMK V Sbjct: 241 DKQGRIRLSMKAV 253 >gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16] Length = 802 Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 203/627 (32%), Positives = 341/627 (54%), Gaps = 24/627 (3%) Query: 6 TVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 +V +++ G+ L+L+TG +AR + AV+A+ G+ V+ATVV + + + PL V Y+ Sbjct: 27 SVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYR 86 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNETQVIINVMQHDLE 123 AVG+IP +LRRE ++NEILISR IDRSIRPL + Y ETQVI + D Sbjct: 87 PSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY--ETQVICKPLALDEN 144 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSG 180 + ++ + AAS+AL +S PF GP+ +V D + +NP +E S+++ V+ Sbjct: 145 ADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIVAM 204 Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 ++ +M+EL+ + + + +A+ + + A+ +L + E + + + Sbjct: 205 RRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELGGIEKDE--LPEKTTTME 262 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDI 298 + E + + +E + + + + +++K M +E + +I + + Sbjct: 263 ILEILEALARERI-YYVMTDSTHDKISRDEEIKAIMEDVIGTEALQPFPPADIYQCWSFL 321 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 KV+R L +R DGR R I QV + ++ HG S+F RG TQ + VT + Sbjct: 322 VKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPT 381 Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGE--VSRMGAPSRREIGHGRLARRAIHPV 412 + DS++ G+QR FM+HY F AT + VS + +RREIGHG LA +A+ P+ Sbjct: 382 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALAEKALKPL 441 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 P FPY +R+ ++ ES+GSSSMA+VCG SLAL DAGVP+ AG+A+GL+ D Sbjct: 442 FP--TGFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKE 499 Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528 ++ +L+DI G ED+ G MDFK+AGT +G TA Q+D+K G++ + +L A+ G Sbjct: 500 PETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGI 559 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588 H+L +M+ + R Q P +E M I P + + G + I +TG K++++ Sbjct: 560 DHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVE 619 Query: 589 DDGTVKIASSSLAEIEAAREMIRSITD 615 D+ + + + S +++ A M+ + + Sbjct: 620 DESNISLLAPSQEKLQKALSMMNGVLE 646 >gi|241582682|ref|XP_002403552.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes scapularis] gi|215502222|gb|EEC11716.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes scapularis] Length = 723 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 227/718 (31%), Positives = 357/718 (49%), Gaps = 58/718 (8%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 LKL +GR+A+ +DG+ +A G+T V+ TVV K F + G+ Sbjct: 1 LKLASGRLAKFADGSAVAQIGDTSVMVTVV--SKTKPASATFLPLLLRLLIMRLFGQ--- 55 Query: 76 GYLRRESRPTENEILIS---------RMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 ES P E++ + +++RS+RPLF Y ETQ++ N++ D + P Sbjct: 56 ----SESVPHESQSRLPGSSYAQHALDLLNRSLRPLFPAGYFYETQLMCNLLAVDGINDP 111 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA- 184 +VS+ AASAAL +S +P+ GPV +V I+G V+NP R Q SL+L V+G + + Sbjct: 112 DIVSLNAASAALSVSDVPWGGPVGAVRVGLIDGDVVINPTRRQMAQSSLNLIVTGAEHSQ 171 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244 V+M+E + + A+ G E + ++ I + K+C + ++ E Sbjct: 172 VVMLEASGDNVLLQDFQKAVRLGVKETQAIVRQIKEFQKLCGRPKRTVEKYFVPTPEMVD 231 Query: 245 SQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 S + + RV + + K R + +LK+ ++ + F ++ Sbjct: 232 SARLLAETRVRDILSDVGHDKISRDNALTELKQDILEKLQESFPGVESFLLNEAFTEVLK 291 Query: 301 KVVRTVMLDKKVRMD--------GRDSETVRDIS--AQVGLLQRTHGSSLFIRGDTQAIV 350 V R +L + + R E D + L + + +G AI Sbjct: 292 AVFREQVLQNEKSIGVAYVHVLFWRLFEPCYDPNDCGDGWFLTLAAINIQYSKGKDGAIR 351 Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 ++ L T +V G + +FM+HY F P AT E R G RRE+GHG LA + Sbjct: 352 ILNLMT----PFVLHFRGIKERNFMLHYEFPPYATNETGRSGPTGRRELGHGALAEHGLR 407 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 P++P+ FP+T+R+ SE+ ES+GSSSMA+VCG S+ALMDAGVPI P AG+A+GLV Sbjct: 408 PLVPR--DFPFTIRLTSEVLESNGSSSMASVCGGSMALMDAGVPIQAPAAGVAVGLVSLP 465 Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 D D+ +L+D+ G ED+LG MDFK+AGT GITA+Q D+K+ GI +++ A+Q Sbjct: 466 DPDQPHQLKDYRLLTDLLGIEDYLGDMDFKMAGTKKGITALQADIKLPGIPVKVVMEAIQ 525 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QA G+ IL M++V+S+ R Q + P E + +PP Q +G+GG IR + +TG Sbjct: 526 QATEGKSEILRIMNEVISKPRAQKKDNWPVSEKLEVPPHQRARFVGLGGYNIRKLTAETG 585 Query: 583 AK-VNIDDDGTVKIASSSLAEIEA-----AREMIRSITDVP-EVNKIYKGQVVKVMDFGA 635 I K + + A+ A +IR I E +Y ++V++ + G Sbjct: 586 VNFFFIYSSIKYKCRNYTPADYSKIKNTNAFTLIRMIQKPNLEFGAVYTAKIVEIRESGV 645 Query: 636 FVH-FCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690 V + L+H SQL +V S + +EG + VK D GK++LS KV+ Sbjct: 646 MVKLYPTMVPTLLHNSQLDQRKVNHPSALGFEEGQDITVKYFGRDPVSGKMRLSRKVL 703 >gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Faecalibacterium prausnitzii SL3/3] Length = 441 Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 171/443 (38%), Positives = 245/443 (55%), Gaps = 37/443 (8%) Query: 2 FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 FD V E AGRP K+E G++ S+ + L YGET V+ VV ++G DFFPL Sbjct: 12 FDNFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V Y+E+ YA G+IPG ++RRE RP E IL SR++DR +RPLF K +N+ + + VM Sbjct: 72 VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + M+ AS +S +P+ GP+ G QV +NG+ VLNP ++ + S L L V+ Sbjct: 132 DPDCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKVSDLALTVA 191 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239 T D ++M+E AN++ ED +L AI H E K +IE I+K+ K I DF Sbjct: 192 ATMDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKI-----DF-- 244 Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284 Q++ D+ V I KY +DD K M + + E+ Sbjct: 245 ------QVVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293 Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344 + ++ V +Q VVR +LD+ R+DGR +R ++A+VG+L R HGS +F RG Sbjct: 294 DLSAADLDLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353 Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404 TQ + TLG +D Q +D L+ Q ++ HYNF P + GE +P RREIGHG L Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413 Query: 405 ARRAIHPVLPQTAQFP--YTLRI 425 A RA+ PVLP +FP + LR+ Sbjct: 414 AERALVPVLPSLEEFPLHHPLRV 436 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449 R G P R I R+ R + P+ P+ + + + + D S +A + G+SL Sbjct: 91 REGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPEIAGMIGASLVTA 150 Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 + +P + P+ G+ +GLV +G+ I+ + + ++ + + VA T I + ++ Sbjct: 151 VSDIPWNGPIGGVQVGLV-NGE---IVLNPTQEQRKVSDLALTVAATMDKI--VMIEAGA 204 Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 + E+ M+ A++ A I+ ++K+++E Sbjct: 205 NEVDEDTMLTAIKTAHVEIKKIIEFINKIVAE 236 >gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus musculus] Length = 551 Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 175/494 (35%), Positives = 289/494 (58%), Gaps = 28/494 (5%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 V ++ R L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+++ Sbjct: 51 VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 109 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + P Sbjct: 110 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 169 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184 ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 170 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 229 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 230 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 285 Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296 E + +++I + + F +K R + ++ ++ + + ++ EI+ F Sbjct: 286 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 345 Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356 + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT + Sbjct: 346 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 405 Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412 E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV Sbjct: 406 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 465 Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471 +P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 466 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 523 Query: 472 ------DFIILSDI 479 D+ +L+DI Sbjct: 524 EKGEIEDYRLLTDI 537 >gi|312090436|ref|XP_003146614.1| 3' exoribonuclease [Loa loa] gi|307758222|gb|EFO17456.1| 3' exoribonuclease [Loa loa] Length = 634 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 218/680 (32%), Positives = 343/680 (50%), Gaps = 72/680 (10%) Query: 40 VLATVV-YDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRS 98 VLATVV S D DF PLTV++Q+ AVG+IP YLRRE + + +IL SRMIDRS Sbjct: 4 VLATVVGRHSSTSDTADFMPLTVDFQQSASAVGRIPTNYLRRELQRNDADILASRMIDRS 63 Query: 99 IRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 IRPLF K Y ETQ+I + D + P ++ + AASAAL LS +P+EGP+ ++ IN Sbjct: 64 IRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAASAALTLSDIPWEGPLGAVRIALIN 123 Query: 159 GQYVLNP-RLDEDQGSLDLFVSGTQDA--VLMVELEANQLSEDVVLDAIIFGHNECKPVI 215 + V+NP R + SLDL ++ D +LM++++ + + I G +I Sbjct: 124 NEIVVNPSRKNMKISSLDLVIAACDDGNRILMIDMDGCETGIEKFAACIETGLQAISYLI 183 Query: 216 EAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQI 268 +AI+K+ C ++ ID D L EEM + + L ++ +K R + + Sbjct: 184 QAINKVRDSCGRQKRQNICGEIDI-DMIALMEEMQILYGDQLYHILTDIEHDKLSRDRAV 242 Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328 L M+ + ++ F ++ K +R + + R DGR + +R + + Sbjct: 243 SALGNHMLESLKERSTPH---KLRHTFTNLLKKSLREALFKSERRCDGRKFDELRPVDIK 299 Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388 + + ++ HGS+LF RG TQ VT D+ S F P A ++ Sbjct: 300 MDVHKKLHGSALFQRGQTQVFSTVTF---------DAPSAA----------FQPDALSQL 340 Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448 FPY LR+ ++ ES+GSSSMA+VC LAL Sbjct: 341 ---------------------------LEDFPYCLRLACDVLESNGSSSMASVCAGCLAL 373 Query: 449 MDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 +DAGV + P AG+AMGL+ K+ +D+ IL+DI+G ED G MDFK+AGT G TAMQ+D Sbjct: 374 LDAGVQMKTPAAGVAMGLIIDKERNDYRILTDINGLEDFAGDMDFKIAGTVRGYTAMQLD 433 Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566 +K+ GI +M+ +L+QA+ G H+L M K R P E + + + + Sbjct: 434 LKVPGIKPEVMMESLEQARNGLEHLLQLMRKAQPFCRNHFKSTVPVHETIPVEIYKRHII 493 Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR----EMIRSITDVPEV-NK 621 GG + I +TGAK++++DD + I + + ++E A+ +M S +++ V Sbjct: 494 FRSGGYNAKLIESETGAKISVEDDANISIFAPNKVKLEEAKMMLTKMFESESEIELVFGA 553 Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD- 678 +YKG++ V++ G V + + L+ S L VA + K G + ++ L D Sbjct: 554 MYKGEITDVLEHGVLVTLHKSMKPILLKNSNLDVRNVAHPKVLGFKVGQKIIIQYLGRDP 613 Query: 679 DRGKIKLSMKVVDQNTGKPI 698 + G ++S K + Q+ PI Sbjct: 614 NTGYHRISRKTL-QSASLPI 632 >gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana CCMP1335] gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana CCMP1335] Length = 659 Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 220/688 (31%), Positives = 338/688 (49%), Gaps = 89/688 (12%) Query: 58 PLTVNYQERTYAVGKIPGGYLRR--ESRP-TENEILISRMIDRSIRPLF-------SKCY 107 PL V+Y+ER +A GKIP RR S P T+ E+L SR+IDR+IRP K Sbjct: 1 PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60 Query: 108 KNETQVIIN--VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQY 161 +++N V +D S A ++G F P+ A + +G Sbjct: 61 SLPGNIVVNCEVQSYD-------------SRASSINGKKFPVPLKAAACVKLAIQRDGSV 107 Query: 162 VLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220 V +P +E + +L +GT+D VLM+E E +SE V +A++ P+IE + Sbjct: 108 VYDPSPNESEDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQ 167 Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280 L ++ ++ D + E + + L ++ F + +D K Sbjct: 168 L-----RQNYRYNASDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLF----- 217 Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR-----------------------MDGR 317 + GE ++I A + +L K+VR DGR Sbjct: 218 -----GDNGEESPTIQNIPAHIHDGTLLSKQVRGRREYIVKSEITRLLKCAMINLRADGR 272 Query: 318 DSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376 + VR ISA + HGSS F RG+TQ I ++G D V S + + Sbjct: 273 GTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDG--VPHASPYSDSSAFL 330 Query: 377 HYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 HY+F +TG V G S RR IGHG LA +A+ PVLP FPY +R+ E+T S+G Sbjct: 331 HYDFPDFSTGTVKSKGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNG 390 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494 SSSMA CGS+LAL+DAGVP+ PVAG+++GL D ++ DI+G EDH G MDFKV Sbjct: 391 SSSMAAACGSTLALLDAGVPLVSPVAGVSVGLTPDSKTLLL--DITGTEDHYGDMDFKVC 448 Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS--ESRLQLGEFTPR 552 GT G+ +MQ+D+K ++ ++ AL AK GR IL M K + R + PR Sbjct: 449 GTSGGVLSMQLDVK-NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPR 507 Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612 +E++ P++ R++IG GG V+R + ++ +++ DG + +L + A+ +I Sbjct: 508 IEVVKFDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDGLI---FGALQAVSGAKRVIMD 564 Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS--TERVAKTS-----DVVK 665 + E +Y+G V+++ DFGA V ++GL+H+S+L+ TE+ + + D +K Sbjct: 565 LVADVEEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLK 624 Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 GD + V D +G IKLS K + Q Sbjct: 625 VGDKIEVLCTKIDHVQGSIKLSRKKLLQ 652 >gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus] Length = 540 Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 288/496 (58%), Gaps = 28/496 (5%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG + G+T V+ T V Q F PL V+Y+ Sbjct: 45 RAVTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P ++++ AS AL LS +P+ GPV ++ I+G+ V+NP R + +L+L V+G + Sbjct: 164 EPDILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSK 239 ++M+E A + + AI G + +I+ I +L K + + P K F+ Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTP 279 Query: 240 LEE--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294 E + +++I + + F +K R + ++ ++ + + ++ EI+ Sbjct: 280 SAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIES 339 Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354 F + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + VT Sbjct: 340 FNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTF 399 Query: 355 GTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410 + E +Q + +++G + +FM+HY F AT E ++ +RRE+GHG LA +A+ Sbjct: 400 DSLESSIKSDQIITAINGVKDKNFMLHYEFPLYATNETGKVTGVNRRELGHGALAEKALC 459 Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470 PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV Sbjct: 460 PVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKT 517 Query: 471 D-------DFIILSDI 479 + D+ +L+DI Sbjct: 518 NPEKGEIEDYRLLTDI 533 >gi|89888168|gb|ABD78634.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii] gi|89888171|gb|ABD78636.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii] gi|89888174|gb|ABD78638.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii] Length = 359 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 151/358 (42%), Positives = 232/358 (64%), Gaps = 7/358 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF+ T ++ + LETG IARQ+ GAVL + +TVVLATVV + K GQ FFPLT Sbjct: 1 MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ + Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + E P + +M+ ASAAL +SG+PF GP+ A+V Y++GQYVLNP + + S +DL V+ Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKTSKMDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238 GT++AVLMVE EA QLSE+++L ++FGH + + + AI L + K E + Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAPAAKND 240 Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293 L ++ +E L + I EK R ++ D+ + + + + ++ + + + Sbjct: 241 ALIAAVTAAAQEGLTAAYQIREKQARTTKLRDVYADVSAKLAEQAAAAGQDAPDSVTVDN 300 Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 + D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%) Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQ-----TAQFPYTLRIVSEITESDGSSSMAT 440 G R G PS +E RL R + P+ P+ +TL + EI + Sbjct: 76 GFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEI-----DPDIPA 130 Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 + G+S AL +G+P + P+ +G V DG + + + + MD VAGT++ + Sbjct: 131 MIGASAALAISGIPFNGPIGAARVGYV-DGQYVL---NPTASQLKTSKMDLVVAGTENAV 186 Query: 501 TAMQMDMKIGGISENIMV 518 ++ + + +SE IM+ Sbjct: 187 LMVESEAQ--QLSEEIML 202 >gi|306836337|ref|ZP_07469316.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens ATCC 49726] gi|304567772|gb|EFM43358.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens ATCC 49726] Length = 493 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 175/467 (37%), Positives = 263/467 (56%), Gaps = 36/467 (7%) Query: 10 EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 ++ R ++ ETG++ARQ+DG+V TY +T++LAT ++ DFFPLTV+ +ER Sbjct: 28 DFGTRTVRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERM 86 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPG + RRE RP+ IL R+IDR +RP F K +NE QV+I V+ D E Sbjct: 87 YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYD 146 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180 VV++ ASAA LSGLP G V G ++ I GQ+V P ++ + +L ++ V+G Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206 Query: 181 -------TQD-AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220 +D A++MVE A + + D A+ G KP I EA + Sbjct: 207 RIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266 Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274 LA+ AKE P+ +D F+ +E+ S+ ++ L + ++ +++ Sbjct: 267 LAERTAKETQEFPLFPAYEDDVFAAVEKAASKKLESLLTIPGKQERDEATNAHMEQVEQD 326 Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 ++ F+ + +I + + ++ K+VR +L R+DGR +RD+S +V L+ R Sbjct: 327 LLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVPR 386 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 HGSSLF RG+TQ + V TL + EQ +DSL+ + +M HYNF P +TGE R+G+P Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGSP 446 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441 RREIGHG LA RA+ PV+P FPY +R VSE S+GS+SM +V Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSV 493 >gi|3970797|emb|CAA74099.1| polynucleotide phosphorylase [Staphylococcus aureus] Length = 277 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/273 (49%), Positives = 187/273 (68%) Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 A+ V TL + Q +D L F+ HYNF + G R G+P RREIGHG L R Sbjct: 1 ALSVCTLAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGER 60 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 A+ ++P FPYT+R+V+E+ ES+GSSS A++C +LALMDAGVPI PVAGIAMGLV Sbjct: 61 ALAQIIPSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLV 120 Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 DG+++ IL+DI G EDHLG MDFKVAGT GITA+QMD+KI GI+E I+ AL QAK+ Sbjct: 121 SDGENYTILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKA 180 Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587 R+ IL E++ ++ R +L ++ P++E++ I P +I++VIG GG+ I I+++TG K++I Sbjct: 181 RMEILEELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDI 240 Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 D DG V IASS I+ A ++I +T EV Sbjct: 241 DQDGNVSIASSDAEMIKKAIKIIEELTKEVEVT 273 >gi|133918825|emb|CAL29617.1| polyribonucleotide nucleotidyltransferase [Rhizobium undicola] Length = 180 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/180 (73%), Positives = 154/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+E Sbjct: 17 RPIVAEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKENFMLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+I P+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133918827|emb|CAL29618.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] gi|133918829|emb|CAL29619.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] gi|133918831|emb|CAL29620.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] Length = 180 Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 132/180 (73%), Positives = 154/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVAEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 >gi|133918847|emb|CAL29628.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli] gi|133918849|emb|CAL29629.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli] gi|133918851|emb|CAL29630.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli] Length = 180 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 154/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD + R+DGRD TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+GD F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEGDRFAVLSDILGDEDHL 180 >gi|133919178|emb|CAL29637.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae] gi|133919180|emb|CAL29638.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae] gi|133919182|emb|CAL29639.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae] Length = 180 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/180 (73%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 23/157 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+E Sbjct: 17 RPIVAEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKENFMLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+I P+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162 >gi|133918823|emb|CAL29616.1| polyribonucleotide nucleotidyltransferase [Rhizobium gallicum] Length = 180 Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLATVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSVEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 >gi|133918839|emb|CAL29624.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti] gi|133918841|emb|CAL29625.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti] gi|133918843|emb|CAL29626.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti] gi|133919172|emb|CAL29634.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris] gi|133919174|emb|CAL29635.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris LMG 14919] gi|133919176|emb|CAL29636.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris] Length = 180 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180 >gi|133918833|emb|CAL29621.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae] gi|133918835|emb|CAL29622.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae] gi|133918837|emb|CAL29623.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae] Length = 180 Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD + R+DGRD TVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTQSRIDGRDLVTVRPIVAEVGILPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180 >gi|133918853|emb|CAL29631.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense] gi|133918855|emb|CAL29632.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense] Length = 180 Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD + R+DGRD TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180 >gi|133918807|emb|CAL29608.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium xinjiangense] gi|133918809|emb|CAL29609.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium xinjiangense] gi|133918811|emb|CAL29610.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii] gi|133918813|emb|CAL29611.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii] gi|133918815|emb|CAL29612.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii] gi|133918817|emb|CAL29613.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii] Length = 180 Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + FM+HYNF P + GE RMG+P RREIGHG+LA RAI P+LP+ QFPYTLR+V Sbjct: 61 TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDEDHL 180 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Y Sbjct: 17 RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126 G R P EI ++ R+IRP+ + + +V+ + + + SS Sbjct: 73 NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 + ++ S ALM +G+P PV G + I Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162 >gi|46202937|ref|ZP_00052357.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 132/193 (68%), Positives = 163/193 (84%) Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 MG+P RREIGHG+LA RAI PVLP +FPYT+R+VSEITES+GSSSMA+VCG SL+LMD Sbjct: 1 MGSPGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMD 60 Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 AGVP+ +PVAGIAMGL+ +G+ F +LSDI GDEDHLG MDFKVAGT+ GIT++QMD+KI Sbjct: 61 AGVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIA 120 Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570 GI+E IM +AL QAK GR HIL EM++ L+ +R +LGE+ PR+E M IP D+IR+VIG G Sbjct: 121 GITEEIMKVALAQAKDGRAHILGEMAQDLTAARPELGEYAPRIETMQIPTDKIRDVIGTG 180 Query: 571 GKVIRGIVEQTGA 583 GK+IR IVE+TGA Sbjct: 181 GKIIREIVEKTGA 193 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 11/126 (8%) Query: 84 PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPHVVSMVAASAALMLS 141 P EI ++ R+IRP+ + E I V+ ES S + S+ S +LM + Sbjct: 4 PGRREIGHGKLAWRAIRPVLPAAH--EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDA 61 Query: 142 GLPFEGPVVGAQVDYI-NGQY--VLNPRL-DEDQ-GSLDLFVSGTQDAV--LMVELEANQ 194 G+P PV G + I G+ VL+ L DED G +D V+GT++ + L ++++ Sbjct: 62 GVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIAG 121 Query: 195 LSEDVV 200 ++E+++ Sbjct: 122 ITEEIM 127 >gi|133918845|emb|CAL29627.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium americanum] Length = 180 Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD + R+DGRD TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE RMG+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180 >gi|133919170|emb|CAL29633.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense] Length = 180 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD + R+DGRD TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + +FM+HYNF P + GE R+G+P RREIGHG+LA RAIHP+LP QFPYTLR+V Sbjct: 61 TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GD+DHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDKDHL 180 >gi|133918805|emb|CAL29607.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] Length = 180 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + FM+HYNF P + GE RMG+P RREIGHG+LA RAI P+LP+ QFPYTLR+V Sbjct: 61 TGMYKERFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 23/157 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162 >gi|133918803|emb|CAL29606.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] gi|133918819|emb|CAL29614.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] Length = 180 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + FM+HYNF P + GE RMG+P RREIGHG+LA RAI P+LP+ QFPYTLR+V Sbjct: 61 TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Y Sbjct: 17 RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126 G R P EI ++ R+IRP+ + + +V+ + + + SS Sbjct: 73 NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 + ++ S ALM +G+P PV G + I Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162 >gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus] Length = 452 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 245/420 (58%), Gaps = 21/420 (5%) Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349 EI+ F + +V R+++L++ R DGRD ++R+IS +V + + HGS+LF RG TQ + Sbjct: 3 EIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVL 62 Query: 350 VVVTLGTRED----EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405 VT + E +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA Sbjct: 63 CTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALA 122 Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465 +A+ PV+P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+G Sbjct: 123 EKALCPVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVG 180 Query: 466 LVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518 LV + D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ Sbjct: 181 LVTKSNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIM 240 Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578 A+QQA + IL MSK +S+ R E P VE + +P + IG GG ++ + Sbjct: 241 EAIQQATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQ 300 Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDF 633 +TG ++ D+ T I + + + AR+ I I E +Y + ++ D Sbjct: 301 AETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDT 360 Query: 634 GAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 G V + L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 361 GVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 420 >gi|133918787|emb|CAL29598.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum] Length = 180 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 152/180 (84%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia] gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia] Length = 485 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/452 (37%), Positives = 251/452 (55%), Gaps = 23/452 (5%) Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319 +K R +++++ ++ S I F + R ++ ++ +R DGRD Sbjct: 16 DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQFNQTSRTIFRELIFERGLRCDGRDY 75 Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-----GTQRNDF 374 + +R+IS QV + + HGS+LF RG TQ V+L ++E +DSL+ G + +F Sbjct: 76 DQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNF 135 Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434 M+HY F P ATGEV R+G RRE+GHG LA R++ P LP +P+T+R+ SE+ ES+G Sbjct: 136 MLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLPTLPN--DYPFTVRLTSEVLESNG 193 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFIILSDISGDEDHL 486 SSSMA+VCG SLALMDAGVP+S P AG+A+GLV K D+ IL+DI G ED++ Sbjct: 194 SSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYM 253 Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 G MD KVAGT G TA+Q D+KI GI +++ +LQ+A + IL+ MS+ + E R Sbjct: 254 GDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSKILDIMSEAIREPRKYR 313 Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P E + + P Q +IG G ++ I +TG + D+ + S A ++ A Sbjct: 314 KECWPVSETVTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNAFAPSQAAMDEA 373 Query: 607 REMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HFCGARDGLVHISQLSTERVAKT 660 +E+I VP E IY ++ ++ D G V + L+H SQL ++A Sbjct: 374 KELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHP 433 Query: 661 SDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690 S + E G + VK D G ++LS KV+ Sbjct: 434 SALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 465 >gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo sapiens] Length = 500 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 270/459 (58%), Gaps = 15/459 (3%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 V ++ R L++ +G++AR +DG+ + G+T V+ T V ++ F PL V+Y+ Sbjct: 45 RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQV+ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182 P V+++ AS AL LS +P+ GPV ++ I+G+YV+NP R + +L+L V+G + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDF 237 ++M+E A + + AI G + +I+ I +L K + + P + S + Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEI 283 Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 K +++ M + + + +K R + ++ ++ + + EI+ F Sbjct: 284 VKYTHKLA-MERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNV 342 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 + +V R+++L++ R DGRD ++R++S +V + + HGS+LF RG TQ + VT + Sbjct: 343 VAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSL 402 Query: 358 E----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 E +Q + +++G + +FM+HY F P AT E+ ++ +RRE+GHG LA +A++PV+ Sbjct: 403 ESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVI 462 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452 P+ FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+G Sbjct: 463 PR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSG 499 >gi|133918821|emb|CAL29615.1| polyribonucleotide nucleotidyltransferase [Rhizobium huautlense] Length = 180 Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 129/180 (71%), Positives = 152/180 (84%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 R + E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RAIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133918797|emb|CAL29603.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] gi|133918799|emb|CAL29604.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] gi|133918801|emb|CAL29605.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens] Length = 180 Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 129/180 (71%), Positives = 153/180 (85%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + FM+HYNF P + GE RMG+P RREIGHG+LA RAI P+LP+ QFPYTLR+V Sbjct: 61 TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Y Sbjct: 17 RPIVSEVGVLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126 G R P EI ++ R+IRP+ + + +V+ + + + SS Sbjct: 73 NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158 + ++ S ALM +G+P PV G + I Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162 >gi|133918791|emb|CAL29600.1| polyribonucleotide nucleotidyltransferase [Rhizobium galegae] Length = 180 Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/180 (71%), Positives = 152/180 (84%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133919184|emb|CAL29640.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis] Length = 180 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/180 (71%), Positives = 152/180 (84%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 >gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei] gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei] Length = 712 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 188/657 (28%), Positives = 342/657 (52%), Gaps = 54/657 (8%) Query: 5 HTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63 +V +++ G+ L+L++G IAR + AV+A+ G+ V+ATVV + + + PL V Y Sbjct: 26 QSVSVDFDGKNALELKSGHIARFASSAVVASSGDNAVMATVVQKKEKQGDGNGVPLQVEY 85 Query: 64 QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123 ++ + K LF + + QVI + D Sbjct: 86 RKNFKKISK-----------------------------LFFRNFFFHFQVICKPLALDEN 116 Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSGT 181 + ++ + AAS AL +S PF GP+ +V G + +NP +E + SLD+ ++ Sbjct: 117 ADQIMLGINAASTALHISSAPFSGPLAALRVTMSPRGTFQINPTQEELREASLDVIIAMK 176 Query: 182 QD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 ++ +M+EL+ ++S + + A + + A+ K+A K+ V+ +++ K+ Sbjct: 177 KNQKTVMIELDGKEVSAEHLEQACHVAFENVEKLHVAMEKMAVGVEKD--VLPTRNLGKI 234 Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 E + +++ E + ++ +K R ++I + + +V S E S +I + + Sbjct: 235 ENILRELVTERVYYVMTDSTHDKISRDQEIQKIYRDVVE--SKELQSHGSQDIYPCYSAL 292 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 +++R +L+ +R DGR R I+ QV + ++ HG S+F RG TQ + VT + Sbjct: 293 VKQILRETVLNTGIRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPA 352 Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 + DS++ G+QR FM+HY F A EV + +RREIGHG LA +A+ + P Sbjct: 353 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHGALAEKALKNLFP 412 Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-- 472 + FPY R+ ++ ES+GSSSMA+VCG SLAL DAGVP+ AG+A+GL+ D ++ Sbjct: 413 K--DFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNEPD 470 Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 + +L+DI G ED+ G MDFK+AGT +G TA Q+D+K G++ + +LQ A+ G H Sbjct: 471 SKYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLKESLQAARSGIDH 530 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 +L++M+ + R + P ++ + I P + + G + I +TG K++ +D+ Sbjct: 531 VLSKMNIMRDRPREEFKTTVPIIQSIRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDE 590 Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-----EVNKIYKGQVVKVMDFGAFVHFCGA 642 + + + + +++ A +M+ + + I + ++V+++D G FV G+ Sbjct: 591 NNISLLAQNKQKLQKAMDMMGEVLETHGNLDFAFGSIVQAEIVEIVDRGVFVTLPGS 647 >gi|148927324|ref|ZP_01810889.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7 genomosp. GTL1] gi|147887280|gb|EDK72739.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7 genomosp. GTL1] Length = 264 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 139/258 (53%), Positives = 184/258 (71%), Gaps = 1/258 (0%) Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGHMD 490 S+GS+SMA+VC L++MDAGVPI PV+GIAMGL DG+ IILSDI G ED G MD Sbjct: 3 SNGSTSMASVCSGILSMMDAGVPIKAPVSGIAMGLATDGNGKAIILSDIQGIEDFAGDMD 62 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550 FKV GT GITA+QMD+K+ GIS ++M ALQQAK GR IL M L E R +L + Sbjct: 63 FKVVGTTRGITALQMDIKVKGISPDLMAKALQQAKTGRAKILEHMLSTLPEPRPELSPYA 122 Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610 PR+E + + P++I +IG GG+ I I +TGA+++I DDG V I++ I+ A E + Sbjct: 123 PRIEKLMVNPEKIGAIIGKGGETINKITAETGAEIDIKDDGLVTISAVEHEAIQKALEWV 182 Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +S+ + PEV K+Y+G+VVK+M+FGAFV+ DG+VHISQLS +RV K +DVVKEGD V Sbjct: 183 KSLVEEPEVGKVYEGKVVKIMEFGAFVNIMPGIDGMVHISQLSDQRVEKVTDVVKEGDIV 242 Query: 671 WVKLLDFDDRGKIKLSMK 688 VKL+ DDRG++ LS+K Sbjct: 243 RVKLVAIDDRGRLNLSIK 260 >gi|133918789|emb|CAL29599.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici] Length = 180 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/180 (71%), Positives = 150/180 (83%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD R+DGRD TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133918793|emb|CAL29601.1| polyribonucleotide nucleotidyltransferase [Rhizobium giardinii] Length = 180 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 127/180 (70%), Positives = 151/180 (83%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133919186|emb|CAL29641.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium mediterraneum] Length = 180 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 126/180 (70%), Positives = 152/180 (84%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT EDEQYVDSL Sbjct: 1 ILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSDILGDEDHL 180 >gi|133918785|emb|CAL29597.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rubi] Length = 180 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 127/180 (70%), Positives = 151/180 (83%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLSTVRPIVSEVGMLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGMLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133918783|emb|CAL29596.1| polyribonucleotide nucleotidyltransferase [Agrobacterium tumefaciens] Length = 180 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 127/180 (70%), Positives = 151/180 (83%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 VLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RAI P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66 RP+ E G + R + G+ L T GET +V+AT+ + +D Q LT Y+ER Sbjct: 17 RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72 Query: 67 ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121 Y+VG+ R P EI ++ R+IRP+ + +V+ + + + Sbjct: 73 NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEITESN 127 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157 SS + ++ S ALM +G+P PV G + I Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161 >gi|133918795|emb|CAL29602.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rhizogenes] Length = 180 Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 127/180 (70%), Positives = 151/180 (83%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD K R+DGRD TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL Sbjct: 1 ILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 +G + F++HYNF P + GE RMG+P RREIGHG+LA RA+ P+LP QFPYTLR+V Sbjct: 61 TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180 >gi|217032224|ref|ZP_03437722.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128] gi|216946095|gb|EEC24706.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128] Length = 382 Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 159/391 (40%), Positives = 228/391 (58%), Gaps = 19/391 (4%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +++ K+R D R E VR I + LL H S LF RG TQ++VV LGT D Q +S Sbjct: 1 MIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHES 60 Query: 366 LSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423 L + FM HYNF P GE S +GA SRRE+GHG LA+RA+ + Q + Sbjct: 61 LEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ---VI 117 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+AMG+V +G D ILSDISG E Sbjct: 118 RLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLE 177 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D G MDFK+AG GITAMQMD K+ GI ++ AL QAK R HIL M + + Sbjct: 178 DAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAKEKIV 237 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASSSLAE 602 + P EI + PD+I +IG GG+VI+ IVE+ K++++ G VKI + Sbjct: 238 INFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKEHV 296 Query: 603 IEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 ++ ++ + + + ++++ + QV +++DFGAF+ +GL L + Sbjct: 297 LKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----LRKQN 351 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 + + V+KEGD++ +++ F ++GKI L + Sbjct: 352 MDRCQVVLKEGDSIRCRVISF-NKGKIALDL 381 >gi|114765824|ref|ZP_01444917.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis HTCC2601] gi|114541823|gb|EAU44860.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. HTCC2601] Length = 250 Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 7/243 (2%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ ++W L LE+G++ARQ+DG V+AT GET V+A V + + K GQDFFPLT Sbjct: 1 MFNITKKSMQWGEETLTLESGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF +K+E V+ V+ H Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173 DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G YVLNP +D+ QG Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGDYVLNPTVDDMQGLRNNPEQR 180 Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233 LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I LA+ CAKEP Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEDCAKEPFDFQ 240 Query: 234 SKD 236 D Sbjct: 241 PPD 243 >gi|1628372|emb|CAA67158.1| polynucleotide phosphorylase [Dichelobacter nodosus] Length = 251 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/239 (55%), Positives = 172/239 (71%) Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495 SSMA+VCGSSLALMDAGVP+ PVAGIAMGL+K+GD+F IL+DI GDEDHLG MDFKVAG Sbjct: 1 SSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDILGDEDHLGDMDFKVAG 60 Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555 + +G+TA+QMD+KI GI+E IM AL QA GRLHIL M++ ++ + +L ++ PR Sbjct: 61 SATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAGTARELSDYAPRFSS 120 Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615 M I ++I++VIG GG IR I EQTG + I+DDG+VKIA++ A AR +I I Sbjct: 121 MRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVA 180 Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 PE+ +IY +V K+ DFGAF+ F ++GLVHISQ++ RV D + EG V VKL Sbjct: 181 EPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKL 239 >gi|213024185|ref|ZP_03338632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/204 (59%), Positives = 158/204 (77%) Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT Sbjct: 1 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 60 Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418 D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + V+P + Sbjct: 61 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 120 Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAGIAMGLVK+GD++++LSD Sbjct: 121 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 180 Query: 479 ISGDEDHLGHMDFKVAGTDSGITA 502 I GDEDHLG MDFKVAG+ GI+A Sbjct: 181 ILGDEDHLGDMDFKVAGSRDGISA 204 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 26/188 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQ 64 R L + TG + R + G+ L T GET L T V D + + D F N+ Sbjct: 25 RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFP 83 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDL 122 Y+VG+ G + P EI R+ R + + + +V+ + + + Sbjct: 84 P--YSVGET--GMV---GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 136 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLF 177 SS + S+ AS ALM +G+P + V G + + + VL+ L DED G +D Sbjct: 137 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 194 Query: 178 VSGTQDAV 185 V+G++D + Sbjct: 195 VAGSRDGI 202 >gi|133919190|emb|CAL29643.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum] Length = 180 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 120/180 (66%), Positives = 147/180 (81%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L Sbjct: 1 ILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 SGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP +FPYT R+V Sbjct: 61 SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 SEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ + F +LSDI GDEDHL Sbjct: 121 SEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSDILGDEDHL 180 >gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii] Length = 180 Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 117/179 (65%), Positives = 147/179 (82%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +LD R+DGRD++TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L Sbjct: 1 ILDTGKRIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL 60 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 SGT + F++HYNF P + GE R+G RREIGHG+LA RAIHPVLP +FPYT+R+V Sbjct: 61 SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVV 120 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 SEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G F +LSDI GDEDH Sbjct: 121 SEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAVLSDILGDEDH 179 >gi|213852747|ref|ZP_03382279.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 325 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/312 (43%), Positives = 194/312 (62%), Gaps = 10/312 (3%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197 Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241 MVE EA LSED +L A++FGH + + VI+AI+ L K K +P ++ L Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVN----DALN 253 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 ++ + + L + I +K R Q+D +K + + +E + + E+ + I+ Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313 Query: 302 VVRTVMLDKKVR 313 VVR+ +L + R Sbjct: 314 VVRSRVLAGEPR 325 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/204 (20%), Positives = 97/204 (47%), Gaps = 21/204 (10%) Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ + G++ R +++ + D A+ V +G ++ + D T ++Y A Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 79 Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437 G + R G PS E RL R + P+ P+ F +++++ + + + Sbjct: 80 AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 137 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 + + G+S AL +G+P + P+ +G + D +++ + + DE +D VAGT+ Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 193 Query: 498 SGITAMQMDMKIGGISENIMVMAL 521 + + ++ + ++ +SE+ M+ A+ Sbjct: 194 AAVLMVESEAEL--LSEDTMLGAV 215 >gi|254696417|ref|ZP_05158245.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2 str. 86/8/59] Length = 185 Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/173 (69%), Positives = 145/173 (83%) Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GR+HIL EM+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+N Sbjct: 2 GRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKIN 61 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+DDGTVKIASS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGL Sbjct: 62 IEDDGTVKIASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 121 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VHISQL+ +RVAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 122 VHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 174 >gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain family [Carboxydibrachium pacificum DSM 12653] gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain family [Carboxydibrachium pacificum DSM 12653] Length = 328 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/316 (38%), Positives = 202/316 (63%), Gaps = 5/316 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E+E AGR L ++TG++A+Q++GA YG+TVVL T + ++G DFFPLTV Y+ Sbjct: 4 RTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ER Y++GKIPGG+++RE +P+E IL +R+IDR IRPLF + Y+N+ QVI V+ D ++ Sbjct: 64 ERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDA 123 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183 P +V+M+ +S AL +S +PF GP V ++G++V+NP ++ + SL L VSGT+D Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKD 183 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241 A++MVE A ++ E+ +LDAI++ H K ++E I + K K +V+ D +LE Sbjct: 184 AIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEID-KELE 242 Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301 E++ E + + PEK R +D ++++++ +F E+ N +I V I + Sbjct: 243 EKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIMKE 301 Query: 302 VVRTVMLDKKVRMDGR 317 +R ++ ++K+R+DGR Sbjct: 302 QMRKMIKEEKIRVDGR 317 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%) Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 R + Q G + Q+ +G++ GDT ++V ++E + +D T + + Y+ Sbjct: 13 RKLVVQTGKVAQQANGAAWVKYGDT-VVLVTACASKEPREGIDFFPLTVEYEERL-YSIG 70 Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMA 439 G + R G PS + I RL R I P+ P+ + +++++ + + D + Sbjct: 71 KIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEG--YRNDVQVIATVLSVDPDAQPEIV 128 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 + GSS+AL + +P + P +A+GLV DG F+I E L H+ V+GT Sbjct: 129 AMIGSSVALSISDIPFNGPTGSVAVGLV-DG-KFVINPTYEQREKSLMHL--VVSGTKDA 184 Query: 500 ITAMQMDMK 508 I ++ K Sbjct: 185 IVMVEAGAK 193 >gi|47218201|emb|CAF97065.1| unnamed protein product [Tetraodon nigroviridis] Length = 556 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 149/437 (34%), Positives = 251/437 (57%), Gaps = 15/437 (3%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R L++ +GR+AR +DG+ + GET V+ T V ++ F PL V+Y+++ A G+I Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRI 59 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133 P YLRRE T+NEIL SR+IDRS+RPLF Y +TQV+ N++ D + P V+++ A Sbjct: 60 PTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINA 119 Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA-VLMVELE 191 ASAAL LS +P+ GP+ +V ++G+ ++NP R + +L+L VSG + V+M+E Sbjct: 120 ASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEAS 179 Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDSKDFSKLEEEMSQMI 248 A + + A+ G + +I AI +LA K+ + P+ + S + + E + Q+ Sbjct: 180 AENVLQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAP-ADVVEYVRQVA 238 Query: 249 KEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306 E + + + +K R + I+ ++ + E++ F + + R + Sbjct: 239 SESIYAVFTDYTHDKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNL 298 Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-- 364 +L++ R DGR+ +R+IS +V L + HGS+LF RG TQ + VT + E D Sbjct: 299 VLNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADII 358 Query: 365 --SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +LSG + +FM+HY F P AT E ++ +RRE+GHG LA +A+ V+P+ +FP+T Sbjct: 359 TTALSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIPK--EFPFT 416 Query: 423 LRIVSEITESDGSSSMA 439 +R+ +E+ ES+G +++ Sbjct: 417 IRVTAEVLESNGEYAVS 433 >gi|332141239|ref|YP_004426977.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551261|gb|AEA97979.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 344 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 193/305 (63%), Gaps = 2/305 (0%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG IARQ+ AVLA+ +T VL TVV + K QDFFPLTVNYQE Sbjct: 5 TKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTVNYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV++ VM + + Sbjct: 65 KAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIP 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184 ++SM+ SAAL +SG+PF GP+ A+V + NG+Y+LN R +E + LDL V+GT+ A Sbjct: 125 TDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTEGA 184 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243 VLMVE EA+ LSE+ +L A++FGH + + V+ A+++ A E + + L+++ Sbjct: 185 VLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTALKDK 244 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + + + ++ + I +K R + + +K + +E ++ E++ + D+++ VV Sbjct: 245 VKALAEAEMTAAYQISDKLERKDGVTAVTEKALEAILAEDEEQDKKEVLDLLHDLESDVV 304 Query: 304 RTVML 308 R+ +L Sbjct: 305 RSRIL 309 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/241 (19%), Positives = 109/241 (45%), Gaps = 21/241 (8%) Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ + G++ R +++ D +++V +G +E + D T ++Y A Sbjct: 15 VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLT------VNYQEKAYA 68 Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES--DGSSS 437 G++ R G PS E RL R I P+ P+ F +++V + + D + Sbjct: 69 AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPE--GFKNEVQVVVTVMSANPDIPTD 126 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 + ++ G+S AL +G+P + P+ +G ++I+ + +E +D VAGT+ Sbjct: 127 IISMIGTSAALAISGIPFNGPIGAARVGF--SNGEYIL--NTRAEEQAESELDLVVAGTE 182 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 + ++ + + +SE M+ A+ +++ +++ +E + ++ P E A Sbjct: 183 GAVLMVESEADV--LSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTA 240 Query: 558 I 558 + Sbjct: 241 L 241 >gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola AmH] gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola AmH] Length = 451 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 154/443 (34%), Positives = 234/443 (52%), Gaps = 39/443 (8%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 VE+ R K ++A+Q++ +V G TV+LAT+ Y+ +DF PL V Y E+ Sbjct: 5 VELNINNRKQKFVLNKVAKQANSSVWFEDGNTVMLATLTYNPDEMVEEDFVPLVVQYVEK 64 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 YAVGKIP G+++RE +P + E L +R++DRS+RPLF K Y T + + + D +S Sbjct: 65 AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKEYGYNTVLTVMALSADEDSDL 124 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 +M AA+A + LS LPF V G + I G+ ++NP L + ++G +LFV+GT+D + Sbjct: 125 QTAAMNAAAACMYLSDLPFAKMVYGVRATRIKGELIINPTLSQLEEGDFNLFVTGTKDEL 184 Query: 186 LMVELEANQLSE-------DVVLDAII-------FGHNECK---------PVIEAISKLA 222 LM+E + E D++LD + + NE K V EAI K A Sbjct: 185 LMIEFASQGQEEIEIIPVDDIMLDGVPVENTIVKYRINEIKEDELVEILEKVQEAIKKGA 244 Query: 223 -------KMCAKEPIVIDSK---DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272 K K+PI + + D ++ E + +LR K R + Sbjct: 245 SAYEEALKDFKKDPIDFEERKEADITEYIELIRSKYSNELREIIKHLSKSERDYLLKQFA 304 Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332 +K+ + E N I+ + ++ ++VR ++L++ +R DGR + +R IS + LL Sbjct: 305 RKIAAALDKEEEFEN---ILKAVKQVKREIVRGMILNEGIRADGRKLDEIRPISIETNLL 361 Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSR 390 R HGS LF RG TQA+ V T G D Q +L+ + FM+HYNF + GE R Sbjct: 362 PRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDKEEKLEKFMLHYNFPAFSVGEAER 421 Query: 391 MGAPSRREIGHGRLARRAIHPVL 413 +G PSRRE+GHG LA+RAI P+L Sbjct: 422 LGPPSRRELGHGNLAKRAIEPLL 444 >gi|260760789|ref|ZP_05873132.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260671221|gb|EEX58042.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] Length = 176 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/165 (69%), Positives = 138/165 (83%) Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594 M+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK Sbjct: 1 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 60 Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IASS+ EIEAA++ I SI PEV +IY+G VVK DFGAFV+F G RDGLVHISQL+ Sbjct: 61 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 120 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 +RVAKT+DVVKEG VWVKL+ FD+RGK++LSMKVVDQ TGK IV Sbjct: 121 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 165 >gi|213417036|ref|ZP_03350180.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 247 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 163/226 (72%) Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 AMGLVK+GD++++LSDI GDEDHLG MDFKVAG+ GI+A+QMD+KI GI++ IM +AL Sbjct: 1 AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 60 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QAK RLHIL M + ++ R + EF PR+ + I D+I++VIG GG VIR + E+TG Sbjct: 61 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETG 120 Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + I+DDGTVKIA++ + + A I IT EV +IY +V +++DFGAFV G Sbjct: 121 TTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGG 180 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 ++GLVHISQ++ +RV K +D ++ G V VK+L+ D +G+++LS+K Sbjct: 181 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 226 >gi|167536393|ref|XP_001749868.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771583|gb|EDQ85247.1| predicted protein [Monosiga brevicollis MX1] Length = 629 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 170/556 (30%), Positives = 283/556 (50%), Gaps = 38/556 (6%) Query: 15 PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--TVNYQERTYAVGK 72 P G +A Q+DGAV T + L + PL V+Y+ER AV Sbjct: 50 PATFTCGALAYQADGAV--TLDQACPLHST-------PSPFLTPLLQQVDYRERGTAVNL 100 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 IP + RRE + E L++R++DRS+RPL TQ+ + ++ P V S+ Sbjct: 101 IPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQARMEPTVQSIE 160 Query: 133 AASAALMLSGLPFEGPVVGAQV----------DYINGQYVLNPRLDEDQGSLD-LFVSGT 181 AASAALM+S + + GPV +V D + ++NP E + L SG Sbjct: 161 AASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINPDHKETAECVGVLLYSGV 220 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSK 239 Q +M++ E +L + A+ H +P +EA +L + K+P++ + Sbjct: 221 QAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGERAGRTKKPLLREPLALGI 280 Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298 + ++Q ++ L V + K R ++++ + ++ + + + E++ Sbjct: 281 MAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADLLQQFPMAGLRLVDDALEEV 340 Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358 + +R ++L + R+DGRD + V+ + A + L HG+SLF RG+TQ TLG R+ Sbjct: 341 LKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRD 400 Query: 359 DEQYVD----SLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413 + +D +++G + + F Y F A ++ RRE GHG LA RA+ ++ Sbjct: 401 AVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHGSLAERALGRMI 460 Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472 + T+R+ S++T S GSSSMA+VCG SLA+MDAGVP+ PVAG++ GLV D+ Sbjct: 461 --DPGYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVPLRAPVAGLSCGLVGYTDEE 518 Query: 473 -----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 + +L+D+ G ED G MD K+A T SG+ A+Q D ++ GIS +++ A+Q+ G Sbjct: 519 GQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTELRGISLDVLEEAMQRTFDG 578 Query: 528 RLHILNEMSKVLSESR 543 + +L EM+ + +R Sbjct: 579 KQVVLKEMNAAMPATR 594 >gi|169642585|gb|AAI60927.1| Pnpt1 protein [Rattus norvegicus] Length = 383 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 202/348 (58%), Gaps = 17/348 (4%) Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + +Q + +++G + +FM+HY F P AT E ++ +RRE+GHG LA +A+ PV+P+ Sbjct: 6 KSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPK-- 63 Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471 FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS VAG+A+GLV + Sbjct: 64 DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEI 123 Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+ I++ A+QQA + Sbjct: 124 EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKRE 183 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL MSK +S+ R E P VE + +P + IG GG ++ + +TG ++ D+ Sbjct: 184 ILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDE 243 Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644 T I + + + AR+ I I E +Y + ++ D G V + Sbjct: 244 ETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 303 Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H SQL ++ + + E G + VK D G+++LS KV+ Sbjct: 304 VLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 351 >gi|330982939|gb|EGH81042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 275 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 118/279 (42%), Positives = 179/279 (64%), Gaps = 11/279 (3%) Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188 M+ SAAL +SG+PF+GPV A+V + Y+LNP ++ Q S LD+ V+GT +AVLMV Sbjct: 1 MIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMV 60 Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEE 243 E EA +L+ED +L A++F H+E + VI AI +LA AK +P ++ S + E Sbjct: 61 ESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSE 120 Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303 + I + ++ K R ++ +LK ++V+ + E S + E+ + F +I+ + V Sbjct: 121 FGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTV 176 Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 R +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT D Q + Sbjct: 177 RENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLL 236 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402 D+L G +++ FM+HYNF P + GE RMG RREIGHG Sbjct: 237 DTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHG 275 >gi|219115974|ref|XP_002178782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409549|gb|EEC49480.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 956 Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 219/378 (57%), Gaps = 28/378 (7%) Query: 337 GSSLFIRGDTQAIVVVTLGTR----EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392 GS F+R TQ +V + +R + E+ DS S + + Y+F P ATG V +G Sbjct: 572 GSLRFLR--TQESLVSDMNSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVP-IG 628 Query: 393 --APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450 A +RR IGHG LA +A+ PVLP FPY +RI SE+T+S+GSSSMA+VCG +LAL+D Sbjct: 629 SQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLD 688 Query: 451 AGVPISKPVAGIAMGLVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505 AGVPI PVAG+++GL +D D +L DI+G ED+ G MDFK+AGT GITA Q+ Sbjct: 689 AGVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQL 748 Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE---SRLQLGEFTPRVEIMAIPPDQ 562 D+K + I+ ALQ A RGR ILNEM S+ +R + PRVE++ P + Sbjct: 749 DVK-QLLPLEIVTEALQLACRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQR 807 Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 R+++G GG ++R + ++ G +++ +G + + ++ A+ + + ++ Sbjct: 808 KRDLVGPGGIILRQLEDRYGVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEV 867 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK---------TSDVVKEGDTVWVK 673 Y+G ++++ DFGA V ++GL+H+S+L+ E+ A +KEG V V Sbjct: 868 YEGTIIEIKDFGAIVELLRNKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVL 927 Query: 674 LLDFDD-RGKIKLSMKVV 690 D D +G I+LS K + Sbjct: 928 CTDVDPVQGSIRLSRKAI 945 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 8/98 (8%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVY------DRSLKDGQDFFPLTVNYQER 66 G P++ TG++AR + +V+ G TVVLATV + + + F LTV+Y++R Sbjct: 60 GPPIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTF-LTVDYRQR 118 Query: 67 TYAVGKIPGGYLRRESRP-TENEILISRMIDRSIRPLF 103 + VGKIP RR++ + E+L SR IDR++RPL Sbjct: 119 YHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLI 156 Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 258 IPEKYVRCK--QI--DDLKKKMVSYFSSEHSSWNEGEIVSVFED-----IQAKVVRTVML 308 +P K VR + QI ++ + + SY ++ ++ E+ + E +Q V++ L Sbjct: 422 LPSKTVRGRREQIVQTEIARLVESYVTAAGDAFEPRELQWLSEQTTKHLLQKGFVQSA-L 480 Query: 309 DKKVRMDGRD-----SETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQ 361 R DGR +T+R + Q+ L T HGS+LF RGDTQ + TLG D Q Sbjct: 481 QGGARADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVLCTATLGPPGDGQ 539 >gi|226329677|ref|ZP_03805195.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198] gi|225202863|gb|EEG85217.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198] Length = 267 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 114/229 (49%), Positives = 158/229 (68%), Gaps = 1/229 (0%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + + ++ + LETG +ARQ+ AV+ T V TVV + +K GQDFFPLT Sbjct: 1 MLNPTVRKFQYGQHTVSLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKAGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q++ V+ Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIVATVVSV 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 + + +P +V+M+ ASA L LSG+PF GP+ GA+V +I+GQYVLNP +DE + S LDL V+ Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGGARVGFIDGQYVLNPTVDELKVSKLDLVVA 180 Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 GT AVLMVE EA+ LSE+ +L A++FGH++ + VIE I+ L KE Sbjct: 181 GTAGAVLMVESEADLLSEEEMLGAVVFGHDQQQVVIENINALVAEVGKE 229 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATVCGSSLA 447 R G P E RL R + P+ P+ F ++IV+ + + + + + G+S Sbjct: 80 REGRPGEGETLIARLIDRPLRPLFPEG--FLNEIQIVATVVSVNPQVNPDIVAMIGASAV 137 Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507 L +GVP + P+ G +G + DG + + + DE + +D VAGT + ++ + Sbjct: 138 LALSGVPFNGPIGGARVGFI-DGQYVL---NPTVDELKVSKLDLVVAGTAGAVLMVESEA 193 Query: 508 KIGGISENIMVMAL 521 + +SE M+ A+ Sbjct: 194 DL--LSEEEMLGAV 205 >gi|289810801|ref|ZP_06541430.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 210 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 106/192 (55%), Positives = 136/192 (70%), Gaps = 1/192 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 19 EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 78 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 79 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 138 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 198 Query: 187 MVELEANQLSED 198 MVE EA LSED Sbjct: 199 MVESEAELLSED 210 Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/192 (19%), Positives = 89/192 (46%), Gaps = 19/192 (9%) Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ + G++ R +++ + D A+ V +G ++ + D T ++Y A Sbjct: 27 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 80 Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437 G + R G PS E RL R + P+ P+ F +++++ + + + Sbjct: 81 AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 138 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 + + G+S AL +G+P + P+ +G + D +++ + + DE +D VAGT+ Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 194 Query: 498 SGITAMQMDMKI 509 + + ++ + ++ Sbjct: 195 AAVLMVESEAEL 206 >gi|254490936|ref|ZP_05104118.1| S1 RNA binding domain protein [Methylophaga thiooxidans DMS010] gi|224463845|gb|EEF80112.1| S1 RNA binding domain protein [Methylophaga thiooxydans DMS010] Length = 208 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/208 (52%), Positives = 147/208 (70%) Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 DFKVAGT+ G+TA+QMD+KI GI+E IM AL QA+ GR+HIL++M+ V+S R ++ EF Sbjct: 1 DFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRIHILDKMNAVISTHRTEMSEF 60 Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609 PR+ + I D+IR+VIG GG IR I E+TGA ++I DDGTV I SS ++A Sbjct: 61 APRIITIKIHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSSDYNAGQSALRR 120 Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + IT EV KIY+G+V K+MDFGAFV +DGLVHISQ+S ERV SD + EGD Sbjct: 121 VEDITAEVEVGKIYEGRVAKLMDFGAFVTILPGKDGLVHISQISDERVENVSDKLSEGDV 180 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 + VK+L+ D +G+I+LSMK V++ T + Sbjct: 181 IQVKVLEVDRQGRIRLSMKAVNEETSES 208 >gi|68171420|ref|ZP_00544811.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|67999162|gb|EAM85821.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis str. Sapulpa] Length = 242 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 160/231 (69%), Gaps = 4/231 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MF++ EW G+ L LE+G+IARQ+ GAV+ +Y T VLATVV ++ K+ DF PLT Sbjct: 1 MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 V + ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF + +E ++ N++ + Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177 D + P V ++V A+AAL +SG+PF G VVGA+V Y+ G+Y+LN DE SLDLF Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179 Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 +SG +D+VLMVE EA++LSE +L AI FGH C+ VI I + + K Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHEVVKH 230 Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MATVCG 443 G + R G PS RE RL R+I P+ P A F + IV + D + + + G Sbjct: 75 GFLKREGKPSDRETLISRLIDRSIRPLFP--AGFYDEISIVCNLLSYDTVTPPEVTALVG 132 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500 ++ AL +GVP + V G +G + +++ + S DE +D ++G + + Sbjct: 133 ATAALSISGVPFNGLVVGARVGYLPSEGKYLL--NASADEMLCSSLDLFLSGNEDSV 187 >gi|289676029|ref|ZP_06496919.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae FF5] Length = 224 Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 108/218 (49%), Positives = 150/218 (68%), Gaps = 3/218 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66 + ++ + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+ Sbjct: 7 KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P Sbjct: 67 TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDP 126 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG-SLDLFVSGTQDA 184 + +M+ SAAL +SG+PF+GPV A+V + Y+LNP ++ Q SLD+ V+GT +A Sbjct: 127 DIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEA 186 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222 VLMVE EA +L+ED +L A++F H+E + VI AI +LA Sbjct: 187 VLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELA 224 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 18/185 (9%) Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV-- 388 + ++ G+ L D +++V +G ++ + +G +HY A G++ Sbjct: 22 IARQASGAVLVTVDDDVSVLVTVVGAKQAD------AGKGFFPLSVHYQEKTYAAGKIPG 75 Query: 389 ---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS--SSMATVCG 443 R G PS +E RL R I P+ P+ F +++V + + +A + G Sbjct: 76 GFFKREGRPSEKETLTSRLIDRPIRPLFPEG--FMNEVQVVCTVVSTSKKIDPDIAAMIG 133 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503 +S AL +G+P PV G A + +++ + + ++ +D VAGT + + Sbjct: 134 TSAALAISGIPFDGPV-GAARVAFHESTGYLL--NPTYEQLQASSLDMVVAGTSEAVLMV 190 Query: 504 QMDMK 508 + + K Sbjct: 191 ESEAK 195 >gi|581223|emb|CAA25332.1| unnamed protein product [Escherichia coli] Length = 196 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 103/189 (54%), Positives = 133/189 (70%), Gaps = 1/189 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI V+ + + +P Sbjct: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AVL Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 Query: 187 MVELEANQL 195 MVE EA L Sbjct: 188 MVESEAQLL 196 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 45/210 (21%), Positives = 95/210 (45%), Gaps = 22/210 (10%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 ML+ VR TV + + G++ R +++ + D A+ V +G ++ + D Sbjct: 1 MLNPIVRKFQYGQHTV---TLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 57 Query: 367 SGTQRNDFMMHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 T ++Y A G + R G PS E RL R I P+ P+ F Sbjct: 58 PLT------VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEG--FVN 109 Query: 422 TLRIVSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 +++++ + + + + + G+S AL +G+P + P+ +G + D +++ + Sbjct: 110 EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NP 165 Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 + DE +D VAGT++ + ++ + ++ Sbjct: 166 TQDELKESKLDLVVAGTEAAVLMVESEAQL 195 >gi|218185968|gb|EEC68395.1| hypothetical protein OsI_36554 [Oryza sativa Indica Group] Length = 485 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/279 (40%), Positives = 170/279 (60%), Gaps = 3/279 (1%) Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183 +P +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT Sbjct: 98 NPEIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTAG 157 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242 AVLMVE EA+ LSED +L A++FGH++ + VIE I+ L K + ++ L Sbjct: 158 AVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALHA 217 Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302 ++++ + L + I EK R Q+D +K +V ++ + + GEI + ++ V Sbjct: 218 RVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDILGTVEKNV 277 Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362 VR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V TLGT D Q Sbjct: 278 VRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQN 337 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIG 400 +D L G + + F+ HYNF P + GE R P + E+ Sbjct: 338 LDELMGEKTDSFLFHYNFPPYSVGETGMREIDPKKAEVA 376 >gi|224537696|ref|ZP_03678235.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus DSM 14838] gi|224520699|gb|EEF89804.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus DSM 14838] Length = 246 Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 158/233 (67%), Gaps = 7/233 (3%) Query: 465 GLVKDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522 GL+K+ D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S I+ AL Sbjct: 1 GLIKNPGEDKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFEILERALN 60 Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582 QAK GR+HIL ++ + + E R +L PR+E M IP + I VIG GGK+I+G+ E+TG Sbjct: 61 QAKEGRMHILGKILETIQEPREELKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETG 120 Query: 583 AKVNI---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 A + I D+ G ++I+ ++ I+ A +I+ I VPEV ++YKG+V VM +GAFV F Sbjct: 121 ATITIEEVDNIGRIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEF 180 Query: 640 CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +DGL+HIS++ +R+ + +KEGD + VKLLD D + GK KLS KV+ Sbjct: 181 LPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVL 233 >gi|306836335|ref|ZP_07469315.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens ATCC 49726] gi|304567806|gb|EFM43391.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens ATCC 49726] Length = 255 Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 160/251 (63%), Gaps = 8/251 (3%) Query: 442 CGSSLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 C S+L+L +AGVP+ PVAGIAMGLV K + F+ L+DI G ED G MDFKVAGT Sbjct: 1 CASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTS 60 Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557 ITA+Q+D K+ GI ++ AL+QA+ R IL M++V+ +S ++ P++ + Sbjct: 61 EFITALQLDTKLDGIPSKVLAQALEQARDARATILETMAEVI-DSPDEMSGLAPKITSVK 119 Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-- 615 IP ++I +IG GK I I E TGA V+I+DDGTV I++ + +AA E + SI + Sbjct: 120 IPVNKIGELIGPKGKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQ 179 Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674 +P+V + + G VVK + FGAFV RDGL+HIS L ER+ K DVV GD V V++ Sbjct: 180 LPKVGERFLGTVVKTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEI 239 Query: 675 LDFDDRGKIKL 685 D D+RGKI L Sbjct: 240 ADIDNRGKISL 250 >gi|87311731|ref|ZP_01093846.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina DSM 3645] gi|87285515|gb|EAQ77434.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina DSM 3645] Length = 350 Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 191/330 (57%), Gaps = 8/330 (2%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 L ETG +A+Q+ GA L YG+TVVL S + G DFFPLT +Y+ERT A GK PG Sbjct: 15 LSFETGYLAKQAAGACLTQYGDTVVLTAAATGPS-RPGTDFFPLTCDYRERTAAAGKFPG 73 Query: 76 GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135 G+++RE RPT EIL R++DR IRP+F K +++E QV+ NV+ D ++ V++M A+ Sbjct: 74 GFIKREGRPTTKEILTCRLMDRPIRPMFPKGFRDEVQVMANVLSSDRQNDGDVLAMNGAA 133 Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194 AL LS LPF+GP+ ++ +IN ++V+ P +E ++ LDL +SG +++VLM+E + + Sbjct: 134 VALGLSSLPFDGPLAAVRLAHINDEFVVFPTHEELEESDLDLIISGNKESVLMIEGFSRE 193 Query: 195 LSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253 + ED++L AI H K + + + L K AKE ++ + + + + D + Sbjct: 194 MPEDIMLKAIETCHEYIKQICDMQLEFLEKAGAKES-NYEAAAPNPIYQTLVDRYYNDFK 252 Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310 + K R + + LK+++ + + + + + D+ ++VR ++L Sbjct: 253 SAKQTSGKQNRAEAVKALKERVKAEMIPDPNAEDAITDPVFKEAWHDLDERIVRDLIL-A 311 Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSL 340 R DGRD T+R I +V +L R HGS++ Sbjct: 312 GTRPDGRDGNTLRAIECKVDVLPRVHGSAV 341 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 32/210 (15%) Query: 325 ISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383 +S + G L ++ G+ L GDT + G S GT Y Sbjct: 15 LSFETGYLAKQAAGACLTQYGDTVVLTAAATGP--------SRPGTDFFPLTCDYRERTA 66 Query: 384 ATGE-----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSS 436 A G+ + R G P+ +EI RL R I P+ P+ F +++++ + SD Sbjct: 67 AAGKFPGGFIKREGRPTTKEILTCRLMDRPIRPMFPKG--FRDEVQVMANVLSSDRQNDG 124 Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496 + + G+++AL + +P P+A + + + D+F++ + +E +D ++G Sbjct: 125 DVLAMNGAAVALGLSSLPFDGPLAAVRLAHI--NDEFVVFP--THEELEESDLDLIISGN 180 Query: 497 DSGITAMQMDMKIGGIS----ENIMVMALQ 522 + + I G S E+IM+ A++ Sbjct: 181 KESV------LMIEGFSREMPEDIMLKAIE 204 >gi|213417627|ref|ZP_03350761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 196 Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 126/179 (70%), Gaps = 1/179 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E ++ + LETG +ARQ+ AV+ + +T V TVV + K GQDFFPLTVNYQERT Sbjct: 18 EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI V+ + + +P Sbjct: 78 YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185 +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LDL V+GT+ AV Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 196 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 38/183 (20%), Positives = 84/183 (45%), Gaps = 19/183 (10%) Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384 ++ + G++ R +++ + D A+ V +G ++ + D T ++Y A Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 79 Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437 G + R G PS E RL R + P+ P+ F +++++ + + + Sbjct: 80 AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 137 Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497 + + G+S AL +G+P + P+ +G + D +++ + + DE +D VAGT+ Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 193 Query: 498 SGI 500 + + Sbjct: 194 AAV 196 >gi|77415113|ref|ZP_00791153.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] gi|77158837|gb|EAO70108.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] Length = 190 Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 96/187 (51%), Positives = 134/187 (71%) Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +FPY +R+V+E+ ES+GSSS A++C +LALM GVPI PVAGIAMGL+ DG ++ +L+ Sbjct: 3 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 62 Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 DI G EDH G MDFKVAGT GITA+QMD+KI GI+ I+ AL QAK+ R IL+ + Sbjct: 63 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 122 Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 ++E R QL P+++++ I D+I+ VIG GG+ I I+ +TG K++ID++G V I S Sbjct: 123 AIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFS 182 Query: 598 SSLAEIE 604 S A I+ Sbjct: 183 SDQAAID 189 >gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 222 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 140/200 (70%) Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFKVAG+ GI+A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + E Sbjct: 2 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 61 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F PR+ + I D+I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A Sbjct: 62 FAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIR 121 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 I IT EV +IY G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G Sbjct: 122 RIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 181 Query: 669 TVWVKLLDFDDRGKIKLSMK 688 V VK+L+ D +G+++LS+K Sbjct: 182 EVPVKVLEVDRQGRVRLSIK 201 >gi|218507624|ref|ZP_03505502.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Brasil 5] Length = 137 Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/126 (74%), Positives = 108/126 (85%) Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632 VIR IVE+TGAK+NI+DDGTVKIASSS EIEAAR+ I SI PE+ +IY+G VVK D Sbjct: 1 VIREIVEKTGAKINIEDDGTVKIASSSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTAD 60 Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 FGAFV+F GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ Sbjct: 61 FGAFVNFFGARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQ 120 Query: 693 NTGKPI 698 TG+ I Sbjct: 121 ATGQEI 126 >gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL F2-208] Length = 184 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 128/185 (69%), Gaps = 2/185 (1%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 M + EWAG+ L +E G++A+Q+ GA L YG+TVVL V + + G DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNY+E+ Y+VGK+PGG+L+RE RP++ L +R+IDR IRPLF++ ++NE Q+ V Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179 D + SP + +M+ +S AL++S +PFEGP+ G V I+G+YV+NP +++ + S + L V+ Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 180 GTQDA 184 GT DA Sbjct: 180 GTYDA 184 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 12/177 (6%) Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 + +S +VG L ++ G++L GDT VV+T + N Y+ Sbjct: 14 KTLSVEVGQLAKQASGAALIRYGDT---VVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVG 70 Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMA 439 G + R G PS R RL R I P+ + F ++I S + + D S MA Sbjct: 71 KVPGGFLKREGRPSDRATLTARLIDRPIRPLFAE--GFRNEVQITSTVFSVDQDCSPEMA 128 Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496 + GSS+AL+ + +P P+AG+ +G + DG ++I I E + VAGT Sbjct: 129 AMLGSSVALVISDIPFEGPIAGVDVGRI-DG-KYVINPTIEQAEKS--DISLTVAGT 181 >gi|223557964|gb|ACM90971.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium URE12] Length = 208 Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 489 MDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547 MDFK+AG+ +G+TA QMD+K+ GI +IM A++QA RGR HIL M K L + + + Sbjct: 1 MDFKLAGSRNGVTAFQMDVKLASGIPMDIMKEAIEQATRGREHILGLMEKALPQPKSDIS 60 Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607 ++ PRV + +P D+I IG GGK IRGI+E+TGA + +++DGTV ++S +EAAR Sbjct: 61 QYAPRVAKLKLPKDKIGAFIGPGGKNIRGIIEKTGANIEVEEDGTVLVSSPDRDSLEAAR 120 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 M+ T EV K+YKG+VV ++DFGAFV ++GL+HIS++ +R + DV+ G Sbjct: 121 SMVEQYTLEVEVGKVYKGRVVSIVDFGAFVEILPGKEGLLHISEIDVKRTNRVEDVLSVG 180 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693 + VK++D ++ GK +LS + + +N Sbjct: 181 QEIEVKVIDMENSGKFRLSRRALLRN 206 >gi|71901440|ref|ZP_00683530.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] gi|71728811|gb|EAO30952.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] Length = 173 Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 85/164 (51%), Positives = 116/164 (70%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 T ++ + LETG +ARQ+ GAV+ +TV+L TVV ++ ++GQDFFPLTV+YQE Sbjct: 5 TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64 Query: 66 RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125 + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I VM D E Sbjct: 65 KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169 + +M+ ASAAL L+G+PF+GP+ A+V Y +GQY+LNP + E Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSE 168 >gi|213423016|ref|ZP_03356034.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 233 Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 9/237 (3%) Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232 V+GT+ AVLMVE EA LSED +L A++FGH + + VI+AI+ L K K +P + Sbjct: 1 VAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAV 60 Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292 + L ++ + + L + I +K R Q+D +K + + +E + + E+ Sbjct: 61 NDA----LNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELG 116 Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352 + I+ VVR+ +L + R+DGR+ + +R + + G+L RTHGS+LF RG+TQA+V Sbjct: 117 EILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTA 176 Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409 TLGT D Q +D L G + + F+ HYNF P + GE +G+P RREIGHGRLA+R + Sbjct: 177 TLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 233 >gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] Length = 259 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 152/251 (60%), Gaps = 7/251 (2%) Query: 9 IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68 I + GR ++L+ G +A Q+ G+VL G+T VL T + ++G DF PLTV+Y+ER Y Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEA-REGIDFLPLTVDYEERLY 66 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 A G+IPGG +RRE RP E IL SR+IDR +RPLF +++ QVI + D P V Sbjct: 67 AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPPDV 126 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187 +++ AS A +++ +PF GP+ +V + +++NP E + G LDL V+G+ D V+M Sbjct: 127 LAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGVIM 186 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242 VE ANQL E +++AI FG+ + +I+A I++L + +EP + D + + + Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVLQEPPIPDQSLENYIRD 246 Query: 243 EMSQMIKEDLR 253 S+ IK+ R Sbjct: 247 RASEEIKKITR 257 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 20/201 (9%) Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSL 366 +DK + DGRD I +VGLL G S+ I GDT V+VT E + +D L Sbjct: 4 IDKSISFDGRD------IRLKVGLLAPQAGGSVLIESGDTA--VLVTATRSEAREGIDFL 55 Query: 367 SGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 T + + +P G + R G P R I RL R + P+ P + L++ Sbjct: 56 PLTVDYEERLYAAGRIPG--GIMRREGRPPERAILTSRLIDRPLRPLFPSWLR--DDLQV 111 Query: 426 VSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 ++ D + V G+S+A + A +P P+A + +GLV GDDFII + + E Sbjct: 112 IALTLSMDELVPPDVLAVTGASIATLIAQIPFYGPMAAVRVGLV--GDDFII--NPTYAE 167 Query: 484 DHLGHMDFKVAGTDSGITAMQ 504 G +D VAG+ G+ ++ Sbjct: 168 IEAGDLDLVVAGSPDGVIMVE 188 >gi|159481271|ref|XP_001698705.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii] gi|158273599|gb|EDO99387.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii] Length = 599 Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 166/349 (47%), Gaps = 89/349 (25%) Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407 +I V TLG+ D R+D M Y+F P + GE R GAP Sbjct: 332 SICVATLGSAND---------ALRSDTMRKYHFPPSSVGETGRTGAP------------- 369 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 +R+ S ITES+GSSSMA+VCG LA+MDAGVPI++PVAGIAMGL+ Sbjct: 370 ---------------VRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAMGLI 414 Query: 468 KDGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526 + + +LSDI G ED LG MDFKVAG ITA QMD+KI Sbjct: 415 LESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKID---------------- 458 Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KV 585 PD+ VIG GG+VI+ I + +GA + Sbjct: 459 ---------------------------------PDKKGAVIGSGGRVIKQIRDVSGATAI 485 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARD 644 +ID+ G V + + S A E ++ + PE I++ + V + FG FV C R Sbjct: 486 DIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCPGRQ 545 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 GLVH+S+L + VVK GD + V ++ D GK+ LS K V ++ Sbjct: 546 GLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQRH 594 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/217 (39%), Positives = 142/217 (65%), Gaps = 2/217 (0%) Query: 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72 G+ +KLETG I RQ++GA++AT GET++ AT S F PLTVNY ER A G+ Sbjct: 94 GKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAGR 153 Query: 73 IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132 GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++ V+ +D + P +++ Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213 Query: 133 AASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190 AA+AAL++S +P + V G +V +G +++NP ++E + S LDL V+GT+DAVLM+E Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIEG 273 Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227 + L+E+ +++A+ G + + + AK K Sbjct: 274 FCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGK 310 >gi|94502417|ref|ZP_01308863.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451026|gb|EAT14005.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 267 Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 157/258 (60%), Gaps = 8/258 (3%) Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGT 496 ATVC S+LALMD+G+ + +PV+GI+MGL+ + + IILSD+ GDED++G MDFK+ GT Sbjct: 1 ATVCASTLALMDSGIIVKRPVSGISMGLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGT 60 Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556 + G+TA QMD+KI GI+ +++ + +AK+G L I+ +M LS R L ++ Sbjct: 61 EYGMTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTF 120 Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSI 613 IP I VIG GGK I+ I T + I + G ++I + +++ A I++I Sbjct: 121 YIPKKLIGAVIGSGGKRIQEIQVSTETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNI 180 Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP+V IYK +V + FG FV +GL+HI ++S + K +++GD + VK Sbjct: 181 TFVPKVGTIYKAKVKNIKKFGVFVKISKYLEGLLHIYEIS--WLTKVESFIRKGDIISVK 238 Query: 674 LLDFDDRG-KIKLSMKVV 690 L +++ KIKLS K++ Sbjct: 239 YLGKNNKFRKIKLSHKMI 256 >gi|213024825|ref|ZP_03339272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 208 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/187 (45%), Positives = 128/187 (68%) Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561 A+QMD+KI GI++ IM +AL QAK RLHIL M + ++ R + EF PR+ + I D Sbjct: 1 ALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTD 60 Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621 +I++VIG GG VIR + E+TG + I+DDGTVKIA++ + + A I IT EV + Sbjct: 61 KIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGR 120 Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 IY +V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ D +G Sbjct: 121 IYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG 180 Query: 682 KIKLSMK 688 +++LS+K Sbjct: 181 RVRLSIK 187 >gi|34787346|dbj|BAC87791.1| polynucleotide phosphorylase [Streptococcus bovis] Length = 159 Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 73/157 (46%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 T E +AGRPL +E G++A+Q++GA + YGE+ VL+ V + + G DFFPL VNY+ Sbjct: 4 QTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 E+ YA GK PGG+ +RE RPT + L +R+IDR IRP+F++ ++NE QVI V+ +D ++ Sbjct: 63 EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161 S + +M +S AL +S +PF GP+ G QV YI+G++ Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEF 159 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMATVCGSSLA 447 R G P+ RL R I P+ + F +++++ + + D S+ MA + GSSLA Sbjct: 78 REGRPTTDATLTARLIDRPIRPMFAEG--FRNEVQVINTVLSYDEDASAPMAAMFGSSLA 135 Query: 448 LMDAGVPISKPVAGIAMGLVKDGD 471 L + +P + P+AG+ + + DG+ Sbjct: 136 LSISDIPFNGPIAGVQVAYI-DGE 158 >gi|207109310|ref|ZP_03243472.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori HPKX_438_CA4C1] Length = 204 Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/193 (48%), Positives = 122/193 (63%), Gaps = 5/193 (2%) Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463 +A+RA+ + Q +R+VSEI ES+GSSSMA+VC SLAL +GV I VAG+A Sbjct: 1 MAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVA 57 Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523 MG+V +G D ILSDISG ED G MDFK+AG GITAMQMD K+ GI I+ AL Q Sbjct: 58 MGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQ 117 Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583 AK+ R HIL M + + + P EI + PD+I +IG GG+VIR IVE+ Sbjct: 118 AKKAREHILKIMHEAKEKIVINFSNL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEV 176 Query: 584 KVNIDD-DGTVKI 595 K++++ G VKI Sbjct: 177 KIDLNKPSGEVKI 189 >gi|255024685|ref|ZP_05296671.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J1-208] Length = 199 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 124/194 (63%) Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563 QMD+KI G+S I+ AL QAK GRLHIL ++ +S R +L + P++ + I P++I Sbjct: 1 QMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEKI 60 Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623 ++VIG GGK I I+++TG K++I+ DGTV IAS A A +I I EV ++Y Sbjct: 61 KDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVY 120 Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 G+V ++ FGAFV DGLVHIS+L+ ERV K D++K GD V VK+++ D +G++ Sbjct: 121 TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRV 180 Query: 684 KLSMKVVDQNTGKP 697 LS K + + +P Sbjct: 181 NLSRKALLEKKEQP 194 >gi|195341761|ref|XP_002037474.1| GM12087 [Drosophila sechellia] gi|194131590|gb|EDW53633.1| GM12087 [Drosophila sechellia] Length = 285 Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 3/229 (1%) Query: 3 DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61 + +VE+ ++ GR + +GR+AR ++G + G+T V+ T V GQ F PL V Sbjct: 38 EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVV 97 Query: 62 NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121 +Y+ + A G+IP ++RRE P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++ D Sbjct: 98 DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157 Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180 SP V+++ AAS AL LS +P+ GP+ +V +G+ ++NP E Q S LDL VS Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217 Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228 T Q+ V+M+E + N + + +L AI G E + +I I +L K ++ Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQ 266 >gi|73969676|ref|XP_865517.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 isoform 3 [Canis familiaris] Length = 367 Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 105/337 (31%), Positives = 186/337 (55%), Gaps = 18/337 (5%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 F PL V+Y+++ A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ Sbjct: 15 FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIRPLFPAGYFYDTQVLC 74 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174 N++ D + P V+++ AS AL LS +P+ GP+ ++ I+G+ V+NP R + +L Sbjct: 75 NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 134 Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPI 230 +L V+G + ++M+E A + + AI G + +I+ I +L K + + P Sbjct: 135 NLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTP- 193 Query: 231 VIDSKDFS---KLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285 K F+ ++ E + ++ E L + + +K R + I+ ++ + Sbjct: 194 ---QKLFTPSPEIVEHIHKLTMERLYAVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPE 250 Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345 + EI+ F + +V R+++L++ R DGRD ++R+I+ +V L + HGS+LF RG Sbjct: 251 ADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQ 310 Query: 346 TQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHY 378 TQ VT + E ++ + +++G + +FM+HY Sbjct: 311 TQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHY 347 >gi|223557963|gb|ACM90970.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium URE12] Length = 316 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 148/253 (58%), Gaps = 3/253 (1%) Query: 4 VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVN 62 + +E + + L ETG +A+Q+ GAV GET+V + KD +F PL+ + Sbjct: 7 ITRLETQVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCD 66 Query: 63 YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122 Y+E+TYA GKIPGG+ +RE + + EIL SR+ DRS+RPLF + ETQV V+ D Sbjct: 67 YREKTYAAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADG 126 Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGT 181 ++ V+S+ A+SAALM+S +PF GPV ++ NG+++ P+ +E G ++L +SGT Sbjct: 127 KNEADVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGT 186 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240 + +LMVE Q+ ++ A+ H E + + ++ K+ K+ + + + + +L Sbjct: 187 RQGILMVEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPEL 246 Query: 241 EEEMSQMIKEDLR 253 + + +M +E L+ Sbjct: 247 KAAVEEMSREPLK 259 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MATVCG 443 G R G +EI RL R++ P+ P F ++ S + +DG + + ++ Sbjct: 80 GFFKREGKARDKEILASRLTDRSVRPLFPD--YFNTETQVNSLVISADGKNEADVLSINA 137 Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG-HMDFKVAGTDSGI 500 SS ALM + +P + PV + +G K FI E+ G M+ ++GT GI Sbjct: 138 SSAALMISDIPFNGPVGAVRIG--KKNGKFIFFPQ---HEERPGLEMELVISGTRQGI 190 >gi|313619119|gb|EFR90912.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL S4-378] Length = 193 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 109/171 (63%) Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 GRLHIL ++ +SE R +L + P++ + I P++I++VIG GGK I I+E+TG K++ Sbjct: 1 GRLHILEHLTSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKID 60 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 I+ DGTV IAS A A +I I EV ++Y G+V ++ FGAFV DGL Sbjct: 61 IEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGL 120 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 VHIS+L+ ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 121 VHISELAHERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 171 >gi|62867371|dbj|BAD95986.1| polyribonucleotide nuculeotidyltransferase [Campylobacter lari] Length = 243 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 26/223 (11%) Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510 AG+ K VAG+AMGLV + + + IL+DI G EDH G MDFKVAG+ GITA+QMD+K+G Sbjct: 1 AGIKSEKLVAGVAMGLVFEDEKYAILTDIMGLEDHDGDMDFKVAGSYEGITALQMDIKLG 60 Query: 511 GISENIMVMALQQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRN 565 GI + ++ AL QAK R HIL M + +++E+ L P++EI + P++I + Sbjct: 61 GIEQQVLKEALYQAKEAREHILKLMEEADRNIIVNEAIL------PKIEIFNVDPNKIPD 114 Query: 566 VIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMI------------RS 612 +IG GGK I+ I+E+ +++D D G VKIA + I ++E I R Sbjct: 115 IIGQGGKTIKEIIEKFEVNIDLDRDKGEVKIAGVNHDLISQSKEYILNLLHSKGSNKKRD 174 Query: 613 ITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 ++P ++ + + G+V KV++FG FV DGL+H S++ Sbjct: 175 RKEMPKFDIGEEFIGKVQKVVEFGVFVELKDGVDGLLHNSKIK 217 >gi|207742729|ref|YP_002259121.1| c terminaus of polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594123|emb|CAQ61050.1| c terminaus of polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] Length = 180 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 102/157 (64%) Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598 + +R +L PR+ + I P++IR+VIG GG I+ + ++TG ++I +DGT+ IAS+ Sbjct: 1 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 60 Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + A+ I IT EV KIY G V+K++DFGA V+ +DGL+HIS+++ ERV Sbjct: 61 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 120 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + SD VKEG V VKLL D++G+++LS+K G Sbjct: 121 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 157 >gi|330981095|gb|EGH79198.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 137 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 1/131 (0%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66 + ++ + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+ Sbjct: 7 KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+ V+ + P Sbjct: 67 TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDP 126 Query: 127 HVVSMVAASAA 137 + +M+ SAA Sbjct: 127 DIAAMIGTSAA 137 >gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Sus scrofa] Length = 487 Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 5 HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64 TV ++ R L++ +G++AR +DG+ + G+T V+ T V Q F PL V+Y+ Sbjct: 45 RTVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYR 103 Query: 65 ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 ++ A G+IP YLRRE ++ EIL SR+IDRSIRPLF Y +TQ++ N++ D + Sbjct: 104 QKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVN 163 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183 P V+++ AS AL LS +P+ GP+ ++ I+G+ V+NP R + +L+L V+G Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPK 223 Query: 184 AVLMVE 189 + + V+ Sbjct: 224 SQIDVQ 229 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 104/413 (25%), Positives = 183/413 (44%), Gaps = 56/413 (13%) Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381 R + G L R GS++ GDT +V T+ S +Q ++ Y Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP--------SPSQFMPLVVDYRQK 105 Query: 382 PCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG-- 434 A G + R S +EI R+ R+I P+ P A + Y +I+ + DG Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFP--AGYFYDTQILCNLLAVDGVN 163 Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI-------------------- 474 + + G+S+AL + +P + P+ + +G++ DG+ + Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPIGAVRIGMI-DGECVVNPTRKEMSSSTLNLVVTGAP 222 Query: 475 ---------ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525 + + + G ED+ G MDFK+AGT GITA+Q D+K+ GI I++ A+QQA Sbjct: 223 KSQIDVQPAVCAFVKGIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQAS 282 Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585 + IL M+K + + R E P VE + +P + +G GG ++ + +TG + Sbjct: 283 VAKKEILQIMNKTIPKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTI 342 Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639 + D+ T I + + + + A++ I I E +Y + ++ D G V + Sbjct: 343 SQVDEETFSIFAPTPSAMHEAKDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLY 402 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 403 PNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 455 >gi|217032225|ref|ZP_03437723.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128] gi|216946096|gb|EEC24707.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128] Length = 292 Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 131/212 (61%), Gaps = 7/212 (3%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ +++ G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECK 212 M+E+ + N L E ++L A+ K Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLK 214 >gi|23012215|ref|ZP_00052356.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum magnetotacticum MS-1] Length = 150 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/106 (62%), Positives = 79/106 (74%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +KIASS I+AA IRSI PE IY G +VK+M+FGAFV+F GA+DGLVHIS+L Sbjct: 1 MKIASSDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISEL 60 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 + +RVAK DVVKEG V VK L D+RGKI+LSMKVVDQ TG+ I Sbjct: 61 AAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 106 >gi|207108928|ref|ZP_03243090.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori HPKX_438_CA4C1] Length = 190 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 122/187 (65%), Gaps = 2/187 (1%) Query: 7 VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66 + I + + + ++A+Q+ ++L G+T++LA+V +R +DF PL V + E+ Sbjct: 4 ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62 Query: 67 TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126 +YA GKIPGG+++RE R + EIL SR+IDR++RPLF K Y+ TQ+ + V+ HD+E+ Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAV 185 V ++ AASAAL L+ + V ++ ++ ++++NP +Q SLDLFVSGT++++ Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFLINPNTSLLNQSSLDLFVSGTKESL 182 Query: 186 LMVELEA 192 M+E+ + Sbjct: 183 NMIEMRS 189 >gi|289524567|ref|ZP_06441421.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502193|gb|EFD23357.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 187 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 99/141 (70%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 E+E GR L TG +A+Q++GAV A YG+T VL T + ++ DFFPL V+Y+ER Sbjct: 13 EVEIGGRTLVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERF 72 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127 YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF + KN+ V+ ++ D + P Sbjct: 73 YAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 132 Query: 128 VVSMVAASAALMLSGLPFEGP 148 V+++ AASAAL +S +P++GP Sbjct: 133 VLAINAASAALAISDIPWDGP 153 >gi|266619742|ref|ZP_06112677.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi DSM 13479] gi|288868673|gb|EFD00972.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi DSM 13479] Length = 192 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/142 (45%), Positives = 94/142 (66%) Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 G++ P++E + I P +I +V+G GKVI I+E+TG K++I DDG+V + + I A Sbjct: 1 GKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARA 60 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E+I+SI E + KG+VV++M+FGAFV +DG+VHIS+LS +RV K D V Sbjct: 61 IEIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNI 120 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 GD V V++L+ D G+I LSMK Sbjct: 121 GDEVTVRVLEVDKMGRINLSMK 142 >gi|110589244|gb|ABG77131.1| polyribonucleotide nucleotidyltransferase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 137 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/103 (58%), Positives = 77/103 (74%) Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 GT GI A+QMD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S R ++ E PR+ Sbjct: 29 GTAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRII 88 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 + I PD+IR+VIG GG IRGI E TGA V+I DDG VKI S Sbjct: 89 EIKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVKIFS 131 >gi|155183643|gb|ABT17081.1| polynucleotide phosphorylase [Dichelobacter nodosus] Length = 133 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/128 (46%), Positives = 86/128 (67%) Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620 ++I++VIG GG IR I EQTG + I+DDG+VKIA++ A AR +I I PE+ Sbjct: 3 EKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVAEPEIG 62 Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 +IY +V K+ DFGAF+ F ++GLVHISQ++ RV D + EG V VKLL+ D + Sbjct: 63 RIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKLLEIDRQ 122 Query: 681 GKIKLSMK 688 G+++LS+K Sbjct: 123 GRVRLSIK 130 >gi|73969674|ref|XP_865499.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 isoform 2 [Canis familiaris] Length = 209 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115 F PL V+Y+++ A G+IP YLRRE ++ E+L SR+IDRSIRPLF Y +TQV+ Sbjct: 15 FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIRPLFPAGYFYDTQVLC 74 Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174 N++ D + P V+++ AS AL LS +P+ GP+ ++ I+G+ V+NP R + +L Sbjct: 75 NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 134 Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFG 207 +L V+G + ++M+E A + + AI G Sbjct: 135 NLVVAGAPKSQIVMMEASAENILQQDFCHAIKVG 168 >gi|77407303|ref|ZP_00784238.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] gi|77174088|gb|EAO77022.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] Length = 223 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFI 258 +L+A++ GH +I ++ KE ++ +L+ E+ L+ + + Sbjct: 1 MLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQV 60 Query: 259 PEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVR 313 EK R + +K+ ++ + + EH ++ ++ + E ++ VR ++ + K+R Sbjct: 61 EEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKIR 120 Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373 DGR + +R + A++ L + HGS LF RG TQA+ V+TL + Q +D L+ + Sbjct: 121 PDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYKKR 180 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414 FM HYNF + GE R GA RREIGHG L RA+ VLP Sbjct: 181 FMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLP 221 >gi|307700245|ref|ZP_07637285.1| KH domain protein [Mobiluncus mulieris FB024-16] gi|307614456|gb|EFN93685.1| KH domain protein [Mobiluncus mulieris FB024-16] Length = 249 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 14/198 (7%) Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571 I +++V AL QA+ RL IL+ M + ++ +L PR+ + IP D+I VIG G Sbjct: 1 IPSDVLVGALGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKG 59 Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629 K+I I E TGA++ I+DDGTV I + + EAAR+ + +I + +PEV + + G VVK Sbjct: 60 KMINQIQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVK 119 Query: 630 VMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685 FGAF+ +DGL+HISQ+ +RV DV++ G V V++ + D RGK+ L Sbjct: 120 TTTFGAFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSL 179 Query: 686 -------SMKVVDQNTGK 696 + D+N+G+ Sbjct: 180 LAVVDDEAATTADENSGE 197 >gi|167945861|ref|ZP_02532935.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 205 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 113/196 (57%), Gaps = 10/196 (5%) Query: 149 VVGA-QVDYINGQYVLNPR---LDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAI 204 +VGA +V Y +G+Y+LN L D LDL V+GT++AVLMVE EAN+LSE+V+L A+ Sbjct: 8 LVGACRVGYKDGEYILNAASTGLSADS-DLDLIVAGTEEAVLMVESEANELSEEVMLGAV 66 Query: 205 IFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYV 263 +FGH + + VI+ I+ LA K +S + L +++ + + + I +K Sbjct: 67 LFGHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLE 126 Query: 264 RCKQIDDLK----KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319 R D +K +K+ S E W+ E+ E ++ ++VR +LD + R+DGRD+ Sbjct: 127 RYAAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDT 186 Query: 320 ETVRDISAQVGLLQRT 335 TVR IS + G+L RT Sbjct: 187 RTVRPISVRTGVLPRT 202 >gi|31335241|gb|AAP44472.1| PNPase [Homo sapiens] Length = 275 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 15/244 (6%) Query: 462 IAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514 +A+GLV D D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI Sbjct: 1 VAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPI 60 Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574 I++ A+QQA + IL M+K +S+ R E P VE + +P + +G GG + Sbjct: 61 KIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNL 120 Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVK 629 + + +TG ++ D+ T + + + + + AR+ I I E +Y + + Sbjct: 121 KKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITE 180 Query: 630 VMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLS 686 + D G V + L+H +QL ++ + + E G + VK D G+++LS Sbjct: 181 IRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 240 Query: 687 MKVV 690 KV+ Sbjct: 241 RKVL 244 >gi|167947925|ref|ZP_02534999.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 99 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/93 (58%), Positives = 70/93 (75%) Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564 MD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S R ++ E PR+ + I PD+IR Sbjct: 1 MDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRIIEIKINPDKIR 60 Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597 +VIG GG IRGI E TGA V+I DDG VKI S Sbjct: 61 DVIGKGGVTIRGITEATGATVDITDDGIVKIFS 93 >gi|270717143|ref|ZP_06223257.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae HK1212] gi|270315521|gb|EFA27748.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae HK1212] Length = 82 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 48/76 (63%), Positives = 59/76 (77%) Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75 + LETG IARQ+ AV+A+ +T V TVV + +K+GQDFFPLTVNYQERTYA GKIPG Sbjct: 7 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 66 Query: 76 GYLRRESRPTENEILI 91 G+ +RE RP+E E LI Sbjct: 67 GFFKREGRPSEGETLI 82 >gi|13543675|gb|AAH05986.1| PNPT1 protein [Homo sapiens] Length = 263 Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + Sbjct: 5 EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKE 64 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M+K +S+ R E P VE + +P + +G GG ++ + +TG ++ D+ Sbjct: 65 ILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 124 Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644 T + + + + + AR+ I I E +Y + ++ D G V + Sbjct: 125 ETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 184 Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 185 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 232 >gi|34785309|gb|AAH00862.2| PNPT1 protein [Homo sapiens] Length = 266 Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + Sbjct: 8 EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKE 67 Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 IL M+K +S+ R E P VE + +P + +G GG ++ + +TG ++ D+ Sbjct: 68 ILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 127 Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644 T + + + + + AR+ I I E +Y + ++ D G V + Sbjct: 128 ETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 187 Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 L+H +QL ++ + + E G + VK D G+++LS KV+ Sbjct: 188 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 235 >gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] Length = 245 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 14/239 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + +R++ VG++ GS++ G+T A+ V G RE + LS R Sbjct: 14 RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAV-YGPRE--MHPRHLSLPDRA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T + + APSRREI ++ R A+ P + QFP + + + EI + Sbjct: 71 VMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAI-FLEQFPRSRIDVFVEIVQ 129 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DGS+ +A++ +SLAL DAGVP+ V G+++GLV + ++ D++G ED+ G D Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDLVIGVSVGLV----NGTVVLDLNGLEDNYGEGDM 185 Query: 492 KVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 V + IT +Q+D G S + AL+ A +G ++ ++ + L ++ E Sbjct: 186 PVGYMPNLGRITLLQLD---GSWSRDKFAEALKLAIKGAEYVYSKAREALKTKYFEIAE 241 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 R +K+ G I+ +DG+ + +YG T +A V R + P + R Y + Sbjct: 24 REVKISVGVIS-NADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMRVR-YHMAPF 81 Query: 74 PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131 R+ P+ EI IS+++ ++ P + ++ V + ++Q D S V S+ Sbjct: 82 STRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQAD--GSTRVASL 139 Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFV 178 AAS AL +G+P V+G V +NG VL+ L+++ G D+ V Sbjct: 140 TAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPV 187 >gi|294337639|emb|CBI62618.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] Length = 171 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 7/171 (4%) Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 KI GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I Sbjct: 1 KIKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60 Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626 G GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ + Sbjct: 61 GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120 Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171 >gi|294337647|emb|CBI62622.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] Length = 171 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 7/171 (4%) Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I Sbjct: 1 KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60 Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626 G GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ + Sbjct: 61 GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120 Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171 >gi|294337651|emb|CBI62624.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] gi|294337653|emb|CBI62625.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] Length = 170 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 102/170 (60%), Gaps = 7/170 (4%) Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I Sbjct: 1 KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60 Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626 G GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ + Sbjct: 61 GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120 Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170 >gi|294337641|emb|CBI62619.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] gi|294337643|emb|CBI62620.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] gi|294337645|emb|CBI62621.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] Length = 171 Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 7/171 (4%) Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I Sbjct: 1 KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60 Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626 G GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ + Sbjct: 61 GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120 Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171 >gi|218672367|ref|ZP_03522036.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli GR56] Length = 69 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/58 (81%), Positives = 53/58 (91%) Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 1 GARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 58 >gi|218461914|ref|ZP_03502005.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Kim 5] Length = 70 Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/58 (81%), Positives = 53/58 (91%) Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I Sbjct: 2 GARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 59 >gi|294337637|emb|CBI62617.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum] Length = 170 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 99/170 (58%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 I GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG Sbjct: 1 IKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ IR+ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKI 120 Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ + FG +G +HIS+L RV K DV+K G + Sbjct: 121 IRFVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQIIL 170 >gi|294337655|emb|CBI62626.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali] gi|294337657|emb|CBI62627.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali] Length = 170 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 I GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG Sbjct: 1 IKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120 Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170 >gi|294337635|emb|CBI62616.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum] Length = 170 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 99/170 (58%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 + GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG Sbjct: 1 VKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ IR+ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKI 120 Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ + FG +G +HIS+L RV K DV+K G + Sbjct: 121 IRFVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQIIL 170 >gi|294337663|emb|CBI62630.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali] Length = 170 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 + GI+ I L+QAK+ R++ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG Sbjct: 1 VKGITLEIFEKVLEQAKKDRINILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120 Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170 >gi|218678596|ref|ZP_03526493.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT 894] Length = 112 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 1/94 (1%) Query: 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219 YVLNP LDE D+ SLDL V+GT DAVLMVE EA +L+E+V+L A++FGHN +PV++AI Sbjct: 1 YVLNPHLDEMDESSLDLVVAGTYDAVLMVESEAKELNEEVMLGAVMFGHNGFQPVLDAII 60 Query: 220 KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253 KLA++ AKEP +D+S LE EM + + +LR Sbjct: 61 KLAEVAAKEPRDFQPEDYSALETEMLGLAEGELR 94 >gi|294337661|emb|CBI62629.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali] Length = 170 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 + GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG Sbjct: 1 VKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVAYIQNFLKKIKVENVYEVKI 120 Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170 >gi|294337659|emb|CBI62628.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali] Length = 170 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%) Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568 + GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG Sbjct: 1 VKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60 Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 GGK+I I+E+ K++I DG + I ++ ++ I++ +V +Y+ ++ Sbjct: 61 SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120 Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ MD FGA +G +HIS+L +V K DV+K G + Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170 >gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1] gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1] Length = 493 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 20/240 (8%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 T++ D +R+DGR ++ +R + +VG+L R GS G + I+V G RE Sbjct: 9 TLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNK-ILVGVFGPREAHP--- 64 Query: 365 SLSGTQRND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421 +QR D YN + + +R G PSRR I +++R A PV+ FP Sbjct: 65 --RRSQRADSAVIRYRYNMASFSVEDRARPG-PSRRSIEISKVSREAFEPVI-MAELFPK 120 Query: 422 T-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 T + I E+ ++D + A + SS+AL DAG+P+ + A G V D I+ D++ Sbjct: 121 TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKV----DGKIVLDLN 176 Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +ED+ G DF VA T G IT +QMD G ++ + + L+ K+G IL VL Sbjct: 177 KEEDNYGEADFPVAMTQDGEITLIQMD---GNLTPDEIKQGLELVKKGCKEILEIQQAVL 233 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 18/211 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69 RP+K+E G ++R +DG+ +G +L V R + D + Y +++ Sbjct: 27 RPMKIEVGVLSR-ADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127 V R P+ I IS++ + P + ++ + K + + V+Q D + Sbjct: 86 VED------RARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-V 185 ++ A+S AL +G+P +G + ++G+ VL+ +ED G D V+ TQD + Sbjct: 138 TAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVAMTQDGEI 197 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 +++++ N L+ D + + CK ++E Sbjct: 198 TLIQMDGN-LTPDEIKQGLELVKKGCKEILE 227 >gi|294337649|emb|CBI62623.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri] Length = 170 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 103/170 (60%), Gaps = 7/170 (4%) Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567 K+ GI+ I L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I Sbjct: 1 KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60 Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626 G GGK+I I+E+ K++I +G + I ++ ++ I++ ++ +Y+ + Sbjct: 61 GSGGKIINQIIEKHDNVKIDIMQNGKIYIMHQNMEIVDLTIAYIKNFLKKIKLETVYEVK 120 Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +++ MD FGA +G +HIS+L+ +V K DV+K G + Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLANYKVDKVEDVLKIGQII 170 >gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro] gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri str. Fusaro] Length = 501 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 20/239 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D +R+DGR ++ +R + ++G+L R GS G + +V V G RE Sbjct: 8 LITDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGV-FGPREAHPRR-- 64 Query: 366 LSGTQRNDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 +QR D + YN +T + +R G PSRR I +++R A PV+ FP T Sbjct: 65 ---SQRADTAVIRYKYNMASFSTEDRARPG-PSRRSIEISKVSREAFEPVI-MAELFPKT 119 Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 + I EI ++D + A + SS+AL DAG+P+ V A G V D I+ D++ Sbjct: 120 AIDIFVEILQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKV----DGQIVLDLNK 175 Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +ED+ G DF VA T G IT +QMD G ++ + + + K+G IL VL Sbjct: 176 EEDNYGEADFPVAMTQDGEITLLQMD---GNLTTDEIRKGFELVKKGCKEILEIQQAVL 231 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 14/209 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G ++R +DG+ +G VL V R + Q + Y+ Y + Sbjct: 25 RPMKIEIGVLSR-ADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVIRYK---YNMA 80 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129 R P+ I IS++ + P + ++ + K + + ++Q D + Sbjct: 81 SF-STEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQAD--AGTRTA 137 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-VLM 187 ++ A+S AL +G+P +G V ++GQ VL+ +ED G D V+ TQD + + Sbjct: 138 AINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFPVAMTQDGEITL 197 Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIE 216 ++++ N L+ D + CK ++E Sbjct: 198 LQMDGN-LTTDEIRKGFELVKKGCKEILE 225 >gi|213023529|ref|ZP_03337976.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 96 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%) Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-D 170 QVI V+ + + +P +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE Sbjct: 2 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 61 Query: 171 QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAII 205 + LDL V+GT+ AVLMVE EA LSED +L A++ Sbjct: 62 ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVV 96 >gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT] gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta thermophila PT] Length = 245 Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 14/243 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 V + +R+DGR + +R I +VG+L+R GS GD + I V G RE + Sbjct: 5 VFIKDGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAV-YGPRE--VHPRH 61 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L R YN + E R G P RR +++R A+ PV+ T+ FP + + Sbjct: 62 LQEVNRAIIRYRYNMASFSVEERRRPG-PDRRSYELSKVSREALEPVI-LTSYFPKSVID 119 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I E+ ++D + A + +S+AL DAG+P+ V+ A G V DG I+ D DED Sbjct: 120 IFVEVLQADAGTRTAGINAASVALADAGIPMRSLVSSCAAGKV-DGQ---IVLDPMKDED 175 Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 + G D +A T +G IT +QMD G ++ + A++ AK+G I +VL E Sbjct: 176 NFGQADMPIAITPTGEITLLQMD---GILTRDEFRQAMELAKKGCQEIYKIQRRVLIERY 232 Query: 544 LQL 546 Q Sbjct: 233 SQF 235 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 18/209 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + +++DG+ G+ V+A V V+ R L++ + Y ++ Sbjct: 22 RPIKMEVG-VLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAI-IRYRYNMASF 79 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126 +V + RR P +S++ ++ P+ Y K+ + + V+Q D + Sbjct: 80 SVEE------RRRPGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQAD--AGT 131 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185 + AAS AL +G+P V ++GQ VL+P DED G D+ ++ T Sbjct: 132 RTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQADMPIAITPTGE 191 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPV 214 + + L+ D A+ C+ + Sbjct: 192 ITLLQMDGILTRDEFRQAMELAKKGCQEI 220 >gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4] Length = 245 Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 12/197 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR E +R I ++G+L+ GS++F G+T+AI V G +E + LS R Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRHLSLPDRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T E + APSRREI ++ R A+ + FP T + + +EI + Sbjct: 73 VLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAIDVFTEILQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED G D Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPEDMWGEADM 186 Query: 492 KVAGTDS--GITAMQMD 506 VA S +T Q++ Sbjct: 187 PVAMMPSLNQVTLFQLN 203 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ + + Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196 Query: 185 VLMVELEANQLSED 198 V + +L N E+ Sbjct: 197 VTLFQLNGNMTPEE 210 >gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1] gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1] Length = 246 Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 19/240 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR E +R + QVG+L GS+L G T+ + V G RE Q L R Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAV-YGPREPHQRFYVLP--DRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T E + APSRREI ++ R A+ PV+ +FP T + + E+ + Sbjct: 74 ALRVRYHMAPFSTDE-RKSPAPSRREIELSKVVREALEPVV-LAEEFPRTVIDVFLEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + A V +SLAL DAG+P+ V G+A+G ++ +++ D+ ED G D Sbjct: 132 ADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQG----VLVVDVDELEDMYGEADM 187 Query: 492 KVAGT-DSG-ITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSK-VLSESRLQLG 547 VA D G IT +Q++ + G + MAL+ R + EM K + +S L++G Sbjct: 188 PVAAAPDIGEITLLQLNGVLTGEEFRTALAMALRAIDR-----VVEMEKEAIRKSYLEVG 242 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF------PLTVNYQERT 67 RP++++ G I +DG+ L +G T VLA V R + Q F+ L V Y Sbjct: 27 RPVRMQVG-ILHNADGSALVEFGRTRVLAAVYGPR--EPHQRFYVLPDRAALRVRYHMAP 83 Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESS 125 ++ + R+ P+ EI +S+++ ++ P L + + V + V+Q D Sbjct: 84 FSTDE------RKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD--GG 135 Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQD 183 ++ AAS AL +G+P V G V I G V++ L++ G D+ V+ D Sbjct: 136 TRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPD 194 >gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2] gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2] gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2] Length = 248 Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD R DGR + +R I ++G+L+ GS++F G+T+AI V G +E + Sbjct: 12 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 68 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 LS R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 69 LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 126 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED Sbjct: 127 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 182 Query: 485 HLGHMDFKVA 494 G D +A Sbjct: 183 MWGEADMPIA 192 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 29 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 87 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 88 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 139 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 +VS++AAS AL +G+P + G V +G +L+ ED G D+ ++ Sbjct: 140 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIA 192 >gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2] gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2] Length = 245 Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD R DGR + +R I ++G+L+ GS++F G+T+AI V G +E + Sbjct: 9 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 LS R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 66 LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 179 Query: 485 HLGHMDFKVA 494 G D +A Sbjct: 180 MWGEADMPIA 189 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 +VS++AAS AL +G+P + G V +G +L+ ED G D+ ++ Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIA 189 >gi|239636248|ref|ZP_04677250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] gi|239597603|gb|EEQ80098.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] Length = 89 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 42/74 (56%), Positives = 58/74 (78%), Gaps = 1/74 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67 + EWAGR L +ETG++A+Q++GAVL YG+TVVL+T + +DG DFFPLTVNY+E+ Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKM 67 Query: 68 YAVGKIPGGYLRRE 81 YA GKIPGG+ + + Sbjct: 68 YAAGKIPGGFKKEK 81 >gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] Length = 244 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 18/225 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGRD E +R I + G+L R GS G + +V G RE + L + Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNK-VVAAVYGPRE--VHPKHLEDPSKA 68 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 Y+ P + E R G P RR I +++R A+ PV+ + FP + + I E+ + Sbjct: 69 IIRYRYSMAPFSVEERKRPG-PDRRSIEISKVSREALEPVIMKEL-FPRSAIDIFVEVLQ 126 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D S A + +S+AL+DAG+P+ V +A+ V D I++ D +ED+ G D Sbjct: 127 ADAGSRTACLNAASVALIDAGIPMKGMVTSVAVAKV----DGILVLDPMKEEDNYGEADI 182 Query: 492 KVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 A G IT +QMD G +S+ + AL+ AK+G + I Sbjct: 183 PFAFLIRNGKIESITLLQMD---GRVSKEELKKALEMAKKGAMQI 224 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + R +DG+ G V+A V V+ + L+D + Y + Sbjct: 22 RPIKIEAGVLNR-ADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAI-IRYRYSMAPF 79 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126 +V + R+ P I IS++ ++ P+ K ++ + + V+Q D S Sbjct: 80 SVEE------RKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQADAGS-- 131 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176 + AAS AL+ +G+P +G V V ++G VL+P +ED G D+ Sbjct: 132 RTACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADI 182 >gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25] gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4] gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25] gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4] Length = 245 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 12/204 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L+ R+DGR + +R I ++G+L+ GS++F G+T+AI V G +E + Sbjct: 9 LILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 LS R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 66 LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179 Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506 G D VA S +T Q++ Sbjct: 180 MWGEADMPVAMMPSLNQVTLFQLN 203 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ + + Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196 Query: 185 VLMVELEANQLSED 198 V + +L N E+ Sbjct: 197 VTLFQLNGNMTPEE 210 >gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15] gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14] gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51] gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15] gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14] gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51] gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] Length = 245 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 +Q + + ++ D K R+DGR + +R I ++G+L+ GS++F G+T+AI V G + Sbjct: 2 LQVERPKLILEDGK-RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPK 59 Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 E + LS R + Y+ P +T E + APSRREI ++ R A+ + Sbjct: 60 E--MHPRHLSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVE 115 Query: 418 QFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476 FP T + + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ Sbjct: 116 LFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIV 171 Query: 477 SDISGDEDHLGHMDFKVAGTDS--GITAMQMD 506 D++ ED G D VA S +T Q++ Sbjct: 172 LDLNEPEDMWGEADMPVAMMPSLNQVTLFQLN 203 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ + + Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196 Query: 185 VLMVELEANQLSED 198 V + +L N E+ Sbjct: 197 VTLFQLNGNMTPEE 210 >gi|237805484|ref|ZP_04592188.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026591|gb|EGI06646.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6] Length = 215 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/85 (54%), Positives = 63/85 (74%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAAR+ + IT E+ KIY G+V +++DFGAFV+ +DGLVHIS LS RV K +D+ Sbjct: 121 EAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDI 180 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +KEG+ V V +LD D+RG+IKLS+K Sbjct: 181 LKEGEEVEVLVLDVDNRGRIKLSIK 205 >gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27] gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27] Length = 245 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 12/204 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L+ R+DGR + +R I ++G+L+ GS++F G+T+AI V G +E + Sbjct: 9 LILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 LS R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 66 LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEAED 179 Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506 G D VA S +T Q++ Sbjct: 180 MWGEADMPVAMMPSLNQVTLFQLN 203 Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ + + Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDMWGEADMPVAMMPSLNQ 196 Query: 185 VLMVELEANQLSED 198 V + +L N E+ Sbjct: 197 VTLFQLNGNMTPEE 210 >gi|47218202|emb|CAF97066.1| unnamed protein product [Tetraodon nigroviridis] Length = 239 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 8/210 (3%) Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 MDFK+AGT+ GITA+Q D+KI G+ +++ A+QQA + IL M+K +++ R E Sbjct: 1 MDFKLAGTNKGITALQADVKIPGLPLKLVMEAIQQATVAKREILAIMNKCIAKPRASRKE 60 Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 P VE + +P + +G GG +R + QTGA +N D+ T + + + + E Sbjct: 61 NGPVVENVRVPVSKRARFVGPGGYNLRKLQAQTGATINQVDEETFSVFAPTPGAMNEVLE 120 Query: 609 MIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSD 662 I I+ E +Y + ++ D G V + L+H SQL +R+ S Sbjct: 121 FISEISKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNMSPVLLHNSQLDHKRIKHPSA 180 Query: 663 VVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + E G + VK D G+++LS KV+ Sbjct: 181 LGLEVGQQIQVKYFGRDPTDGRMRLSRKVL 210 >gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A] Length = 245 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 12/197 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R I ++G+L+ GS++F G+T+AI V G +E + LS R Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRHLSLPDRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T E + APSRREI ++ R A+ + FP T + + +EI + Sbjct: 73 VLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAIDVFTEILQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ ED G D Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPEDMWGEADM 186 Query: 492 KVAGTDS--GITAMQMD 506 VA S +T Q++ Sbjct: 187 PVAMMPSLNQVTLFQLN 203 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 26 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ + + Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196 Query: 185 VLMVELEANQLSED 198 V + +L N E+ Sbjct: 197 VTLFQLNGNMTPEE 210 >gi|51491297|emb|CAH18709.1| hypothetical protein [Homo sapiens] Length = 246 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 8/215 (3%) Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 D+ G MDFK+AGT+ GITA+Q D+K+ GI I++ A+QQA + IL M+K +S+ R Sbjct: 1 DYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPR 60 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 E P VE + +P + +G GG ++ + +TG ++ D+ T + + + + + Sbjct: 61 ASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAM 120 Query: 604 EAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERV 657 AR+ I I E +Y + ++ D G V + L+H +QL ++ Sbjct: 121 HEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKI 180 Query: 658 AKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690 + + E G + VK D G+++LS KV+ Sbjct: 181 KHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 215 >gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7] gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str. 7] Length = 247 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 15/231 (6%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD +R+DGR + +R I ++G+L+ GS++F G+T+ I V G + E + Sbjct: 13 LILDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPK--EMHPRH 69 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L+ R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 70 LALPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESTI-LVELFPRTVID 127 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + E+ ++D + + ++ +S+AL DAG+P+ +AG+A+G D +++ D++ ED Sbjct: 128 VFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVG----KADGVLVLDLNEPED 183 Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 G D VA S + +Q++ G ++ AL+ A++G I N Sbjct: 184 MWGEADMPVAMMPSLKQVALLQLN---GNMTPQEFRQALEMAQKGIETIYN 231 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ + G T V+A V + + P L V Y ++ Sbjct: 30 RPIKIELG-VLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFS 88 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V + V+Q D + Sbjct: 89 TDE------RKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD--AGTR 140 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 +VS++AAS AL +G+P + G V +G VL+ ED G D+ V+ Sbjct: 141 LVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVA 193 >gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] Length = 242 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 10/191 (5%) Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363 + V++ +R+DGR E +R + +G+L+ +GS+L G+T+A+ V G RE Sbjct: 4 KPVLIRDGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAV-YGPRE--ALP 60 Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YT 422 +S R + Y+ P +T E + APSRREI ++ R A+ V+ T+QFP + Sbjct: 61 KHISLPDRAILRVRYHMAPFSTTE-RKSPAPSRREIELSKVIREALESVV-FTSQFPRAS 118 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482 + + EI ++DG + + +SLAL DAG+P+ V G+A+G V D +++ DI+ Sbjct: 119 IDVFIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKV----DGVLVLDINEL 174 Query: 483 EDHLGHMDFKV 493 ED G D V Sbjct: 175 EDEYGEADLPV 185 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+++ G + + ++G+ L YG T LA V R P L V Y ++ Sbjct: 23 RPVRIALG-VLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAPFS 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ + S+ + V I ++Q D Sbjct: 82 TTE------RKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD--GGTR 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVL 186 + AAS AL +G+P V+G V ++G VL+ L+++ G DL V + Sbjct: 134 TTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIMPNTGE 193 Query: 187 MVELEAN 193 +V L+ N Sbjct: 194 IVLLQLN 200 >gi|255027710|ref|ZP_05299696.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J2-003] Length = 137 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%) Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 G K++I+ DGTV IAS A A +I I EV ++Y G+V ++ FGAFV Sbjct: 1 GVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFK 60 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697 DGLVHIS+L+ ERV K D++K GD V VK+++ D +G++ LS K + + +P Sbjct: 61 GTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 116 >gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus V24Sta] gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta] Length = 246 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L VR DGR + +R++ VG++ GS++ G T A+ V G RE + L Sbjct: 8 LLQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425 S R + Y+ P +T + + PSRREI ++ R A+ P + Q+P + + + Sbjct: 65 SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-MLEQYPRSRIDV 123 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 EI ++DGS+ +A++ +SLAL DAG+ + V G+++GLV D ++ D++G ED Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLV----DGTVVLDLNGLEDQ 179 Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 G D V + T +Q+D G + ++ AL A +G + + L Sbjct: 180 YGEGDLPVGYMPNLRRYTLLQLD---GAWGRDKLLEALNLAVKGAEFVYQKARDALKNRY 236 Query: 544 LQLGE 548 + + E Sbjct: 237 MAIAE 241 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 15/172 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +++ G I+ +DG+ + +YG T +A V R + P + V Y ++ Sbjct: 24 REVQISVGVIS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 R+ P+ EI IS+++ ++ P + + ++ V I ++Q D S Sbjct: 83 TKD-----ERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD--GSTR 135 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178 V S+ AAS AL +G+ V+G V ++G VL+ EDQ G DL V Sbjct: 136 VASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPV 187 >gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184] gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum DSM 4184] Length = 246 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 + VR DGR + +R+++ VG++ GS++ G T A+ V G RE + L Sbjct: 8 LFQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425 S R + Y+ P +T + + P+RREI ++ R A+ P + Q+P + + + Sbjct: 65 SLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAV-VLEQYPRSRIDV 123 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 EI ++DGS+ +A++ +SLAL DAGV + V G+++GLV D ++ D++G ED Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLV----DGAVVLDLNGLEDQ 179 Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 G D V + T +Q+D G + + + AL A +G + + L Sbjct: 180 YGEGDLPVGYMPNLKRFTLLQLD---GAWTRDKFLEALNLAIKGAEFVYQKARDALKSKY 236 Query: 544 LQLGE 548 + + E Sbjct: 237 MTIAE 241 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 14/163 (8%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78 I +DG+ + +YG T +A V R + P + V Y ++ Sbjct: 32 IVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKD-----E 86 Query: 79 RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 R+ PT EI IS+++ ++ P + + ++ V I ++Q D S V S+ AAS Sbjct: 87 RKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD--GSTRVASLTAASL 144 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178 AL +G+ V+G V ++G VL+ EDQ G DL V Sbjct: 145 ALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPV 187 >gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348] gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula DSM 5348] Length = 245 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD R+DGR + +R + ++G+L+ GSSL G+T+ I+ G RE + Sbjct: 9 LILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTK-IIAAVYGPRE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L+ R + Y+ P +T E + PSRREI ++ R A+ + QFP + + Sbjct: 66 LALPNRATLRVRYHMTPFSTDE-RKSPVPSRREIELSKVIREALESSI-LVEQFPRSSID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + E+ ++D + +A++ +SLA++DAG+P+ +A +A+G D +++ D++ ED Sbjct: 124 VFMEVIQADAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKA----DGVVVLDLNEPED 179 Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 G D VA S IT +Q++ G +++ L+ A +G I N +VL Sbjct: 180 MWGEADMPVAMLPSLGQITLIQLN---GNMTQQEFKQGLELAYKGISTIYNLEKEVL 233 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ L G T ++A V R + P L V Y ++ Sbjct: 26 RPMKMEIG-VLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + ++ V + V+Q D + Sbjct: 85 TDE------RKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 + S++AAS A++ +G+P + + V +G VL+ ED G D+ V+ Sbjct: 137 LASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189 >gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5] gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Adp In Double Conformation gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With A Single Stranded 10-Mer Poly(A) Rna gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Cdp gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi GE5] Length = 249 Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ +GS+ +I I+ G RE + L R Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSA-YIEWGKNKIIAAVYGPRE--LHPKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR I ++ + A+ P L FP T + + E+ + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + +G+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G ++++ + A++ A +G + + + L E L++ + Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + ++G+ +G+ ++A V R L P L V Y ++ Sbjct: 27 RPIKMEVG-VLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P I IS++I ++ P + + V I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I G+ VL+ +ED G D+ V+ Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190 >gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions Length = 250 Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 10/190 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD R DGR + +R I ++G+L+ GS++F G+T+AI V G +E + Sbjct: 14 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 70 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 LS R + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 71 LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 128 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + +EI ++D S + ++ +SLAL DAG+P+ +AG+A+G D +I+ D++ E Sbjct: 129 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETEA 184 Query: 485 HLGHMDFKVA 494 G D +A Sbjct: 185 MWGEADMPIA 194 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ + G T +A V + + P L V Y ++ Sbjct: 31 RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 89 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + V ++Q D S Sbjct: 90 TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 141 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN 164 +VS++AAS AL +G+P + G V +G +L+ Sbjct: 142 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILD 178 >gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638] gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638] Length = 250 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ +GS+ +I I+ G RE + L R Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSA-YIEWGKNKIIAAVYGPRE--IHPKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR I ++ R A+ P L FP T + + E+ + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIRGALEPAL-ILEMFPRTAIDVFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA + G + +G+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACSAGKI-EGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G +++ + A++ A +G + + + L E L++ + Sbjct: 188 PVAIMPIKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + + ++G+ +G+ ++A V R + P L V Y ++ Sbjct: 27 RPIKMKVG-VLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P I IS++I ++ P + + V I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I G+ VL+ +ED G D+ V+ Sbjct: 138 VAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVA 190 >gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] Length = 243 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 105/190 (55%), Gaps = 10/190 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD +R+DGR + +R + +VG+L+ GS++ G+T+ I+ G RE + Sbjct: 9 LILDNGLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTK-ILAAVYGPRE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L+ R + Y+ P +T E + APSRREI ++ R A+ + QFP T + Sbjct: 66 LALPNRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESQI-LVEQFPRTSID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + E+ ++D + +A++ +SLA++DAG+P+ +A +A+G D +++ D++ ED Sbjct: 124 VFMEVLQADAGTRLASLMAASLAVVDAGIPVRDLIAAVAVGKA----DGVVVLDLNEPED 179 Query: 485 HLGHMDFKVA 494 G D VA Sbjct: 180 MWGEADMPVA 189 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ + G T +LA V R + P L V Y ++ Sbjct: 26 RPMKMEVG-VLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + + V + V+Q D + Sbjct: 85 TDE------RKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 + S++AAS A++ +G+P + V +G VL+ ED G D+ V+ Sbjct: 137 LASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189 >gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3] gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 249 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ +GS+ +I I+ G RE + L R Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSA-YIEWGRNKIIAAVYGPRE--LHSKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR I ++ + A+ P L FP T + + E+ + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTSIDVFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + +G+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G +++ + A++ A +G + + + L E L++ + Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + + ++G+ +G ++A V R L P L V Y ++ Sbjct: 27 RPIKMKVG-VLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P I IS++I ++ P + + V I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I G+ VL+ +ED G D+ V+ Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190 >gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1] gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus kodakarensis KOD1] Length = 249 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ ++ ++ G RE + L R Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA-YVEWGKNKVLAAVYGPRE--IHPKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR + ++ R A+ P L FP T + + EI + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-LLHMFPRTAIDVFIEILQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + DG+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI-DGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G ++++ + A++ A +G + + + L E L++ + Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 19/212 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ +G+ VLA V R + P L V Y ++ Sbjct: 27 RPIKMEVG-VLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P L + V I ++Q D + Sbjct: 86 VEE------RKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184 V + AAS AL +G+P + V I+G+ VL+ +ED G D+ V+ ++ Sbjct: 138 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKND 197 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 + +++++ L++D L+A+ K V + Sbjct: 198 ITLLQMDG-YLTKDEFLEAVRLAIKGAKAVYQ 228 >gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] Length = 248 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ +I I+ G RE QR Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSA-YIEWGKNKILAAVYGPREIHP-----KHLQRP 69 Query: 373 D---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSE 428 D + YN P + E + G P RR + ++ R A+ P L FP T+ + E Sbjct: 70 DTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTVVDVFIE 127 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++D + +A + +SLAL DAGVP+ VA A G + DG+ I+ D++ DED+ G Sbjct: 128 VLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI-DGE---IVLDLNKDEDNYGE 183 Query: 489 MDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 D VA + IT +QMD G +++ + A++ A +G + + + L E L++ Sbjct: 184 ADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 240 Query: 547 GE 548 + Sbjct: 241 AQ 242 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69 R + +E G + + +DG+ +G+ +LA V R + D L V Y ++ Sbjct: 26 RKIHMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P + + V I V+Q D + Sbjct: 85 VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I+G+ VL+ DED G D+ V+ Sbjct: 137 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVA 189 >gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1] gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1] Length = 249 Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ ++ I+ G RE + L R Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA-YVEWGKNKILAAVYGPRE--IHPKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR + ++ R A+ P L FP T + I E+ + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTAIDIFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + +G+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G ++ + + A++ A +G + + + L E L++ E Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ +G+ +LA V R + P L V Y ++ Sbjct: 27 RPIKMEVG-VLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P + + + I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I G+ VL+ +ED G D+ V+ Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190 >gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] Length = 245 Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 110/204 (53%), Gaps = 12/204 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++LD R+DGR + +R + ++G+L+ GSSL G+T+ I+ G RE + Sbjct: 9 LILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTK-IIAAVYGPRE--MHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L+ R + Y+ P +T E + PSRREI ++ R A+ + QFP + + Sbjct: 66 LALPNRATLRVRYHMTPFSTDE-RKSPVPSRREIELSKVIREALESSV-LVEQFPRSSID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 + E+ ++D + +A++ +SLA++DAG+P+ +A +A+G D +++ D++ ED Sbjct: 124 VFMEVIQADAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKA----DGVVVLDLNEPED 179 Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506 G D VA S IT +Q++ Sbjct: 180 MWGEADMPVAMMPSLGQITLIQLN 203 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ L G T ++A V R + P L V Y ++ Sbjct: 26 RPMKMEIG-VLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ L + ++ V + V+Q D + Sbjct: 85 TDE------RKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 + S++AAS A++ +G+P + V +G VL+ ED G D+ V+ Sbjct: 137 LASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189 >gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3] gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like protein (Rrp41p) [Thermococcus gammatolerans EJ3] Length = 249 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ +I I+ G RE QR Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSA-YIEWGKNKILAAVYGPREIHP-----KHLQRP 70 Query: 373 D---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSE 428 D + YN P + E + G P RR + ++ R A+ P L FP T+ + E Sbjct: 71 DTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTVVDVFIE 128 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++D + +A + +SLAL DAGVP+ VA A G + DG+ I+ D++ DED+ G Sbjct: 129 VLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI-DGE---IVLDLNKDEDNYGE 184 Query: 489 MDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 D VA + IT +QMD G +++ + A++ A +G + + + L E L++ Sbjct: 185 ADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 241 Query: 547 GE 548 + Sbjct: 242 AQ 243 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69 R + +E G + + +DG+ +G+ +LA V R + D L V Y ++ Sbjct: 27 RKIHMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P + + V I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I+G+ VL+ DED G D+ V+ Sbjct: 138 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVA 190 >gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9] Length = 242 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+ GR E +R I +VGLL+R GS F G+ +A+ V G RE + +R Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAV-YGPRE--MHPRHFQNAKRA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P + + R G P RR ++R+A+ PV+ + + + E+ +S Sbjct: 71 VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ +A+G + DG+ ++ D+ ED+ G D Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADVP 185 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + IT +QMD ++ Sbjct: 186 IAMIARTNTITLLQMDGRL 204 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 21/213 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G + R +DG+ G LA V R + + Q+ V Y+ Sbjct: 24 RPIKIEVGLLKR-ADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVKYRYNMAPFS 82 Query: 72 ----KIPGGYLRRESRPTENEILISRMIDRSI-RPLFSKCYKNETQVIINVMQHDLESSP 126 K PG + R E ++ + +D I R L+ K +V + V+Q D + Sbjct: 83 VDDRKRPGP----DRRSQEISMVSRKALDPVILRELYPKT---AIEVYVEVLQSD--AGT 133 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQD 183 + AAS AL +G+P V + I+G+ VL+ ED G D+ ++ + Sbjct: 134 RTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADVPIAMIARTN 193 Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 + +++++ +L ++ + N C+ + E Sbjct: 194 TITLLQMDG-RLKKEEFERGLKLAMNGCRKIYE 225 >gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] Length = 246 Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ ++ I+ G RE + L R Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSA-YVEWGKNKIMAAVYGPRE--IHPKHLQKPDRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR + ++ R A+ P + FP T + I E+ + Sbjct: 73 ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAV-ILELFPRTSIDIFIEVLQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + DG+ I+ D++ +ED+ G D Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI-DGE---IVLDLNKEEDNYGEADV 186 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G +++ + A++ A +G + + + L E L++ E Sbjct: 187 PVAIMPIKNDITLLQMD---GYLTKEEFLEAVKLAIKGAKAVYQKQREALREKYLKIVE 242 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + + +DG+ +G+ ++A V R + P L V Y ++ Sbjct: 26 RKIKMEVG-VLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILRVRYNMAPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P + + + I V+Q D + Sbjct: 85 VEE------RKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P + V I+G+ VL+ +ED G D+ V+ Sbjct: 137 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVA 189 >gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] Length = 240 Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 9/237 (3%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I VG+L+ GS+ G T+ I+ G RE Y L+ R Sbjct: 12 LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTK-IIAAVYGPRE--VYPRHLALPDR 68 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 Y+ P +T + + APSRREI ++ R A+ ++ T+ + E+ + Sbjct: 69 ALIRCRYHMAPFSTSD-RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQ 127 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + + +SLAL DAG+P+ VAG+A G V D +++ DI ED G D Sbjct: 128 ADGGTRTTGLTAASLALADAGIPMRDLVAGVAAGKV----DGVLVLDIDEVEDEYGEADM 183 Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 + G +GI + + G + AL AKRG I M + L + L++ E Sbjct: 184 PI-GYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLHKKYLKVLE 239 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + + +DG+ YG T ++A V R + P + Y ++ Sbjct: 23 RPIKMDVG-VLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127 R+ P+ EI +S++I ++ L FS+ Y T V I V+Q D Sbjct: 82 TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD--GGTR 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL---FVSGTQD 183 + AAS AL +G+P V G ++G VL+ ++++ G D+ + +G + Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193 Query: 184 AVLM 187 VL+ Sbjct: 194 IVLL 197 >gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] Length = 246 Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 18/227 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGRD + +R I + G+L+R GS +I IV G R E + L R Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGSC-YIEMGKNKIVAAVYGPR--EVHPRHLQDPSRA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 YN P + E + G P RR I +++R A+ PV+ + FP + + I E+ + Sbjct: 71 IIRYRYNMAPFSVEERKKPG-PDRRSIEISKVSREALEPVILKEL-FPRSGIDIFVEVLQ 128 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + A + +S+AL+DAGV + + +A+ V +G+ I+ D +ED+ G D Sbjct: 129 ADAGTRTACLNAASVALIDAGVAMRGMITAVAVAKV-EGE---IVLDPMKEEDNYGEADV 184 Query: 492 KVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 A G I +QMD G +S M AL+ AK+G + I N Sbjct: 185 PFAFLIRNGKIESIALLQMD---GKMSAEEMKKALELAKKGAMQIYN 228 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 95/199 (47%), Gaps = 23/199 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + R++DG+ G+ ++A V V+ R L+D + Y + Sbjct: 24 RPIKIEAG-VLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAI-IRYRYNMAPF 81 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126 +V + R++ P I IS++ ++ P+ K ++ + + V+Q D + Sbjct: 82 SVEE------RKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQAD--AGT 133 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180 + AAS AL+ +G+ G + V + G+ VL+P +ED G D L +G Sbjct: 134 RTACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFAFLIRNG 193 Query: 181 TQDAVLMVELEANQLSEDV 199 +++ +++++ +E++ Sbjct: 194 KIESIALLQMDGKMSAEEM 212 >gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] Length = 255 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR E +R I +VG+L GS+L G T+ I V G RE + ++ R Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAV-YGPRE--AHPRHVALPDR 80 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 Y+ P +T E + AP+RRE+ ++ R A+ V+ + +P T + + E+ Sbjct: 81 AIIRCRYHMAPFSTAE-RKTPAPTRREVELSKVIREALEAVV-ISELYPRTAIDVYMEVL 138 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 +SDG + A + +SLAL DAG+ + VAG+A+G V D +++ DI ED+ D Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV----DGVLVLDIDEIEDNYAEAD 194 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 VA S + + + G ++ + V AL+ A++G I N + L + +++ Sbjct: 195 MPVAMAPSLDKVLLLQLN-GVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEV 249 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+++E G + +DG+ L YG T V+A V R P + Y ++ Sbjct: 35 RPIRMEVG-VLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFS 93 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127 + R+ PT E+ +S++I ++ + S+ Y + V + V+Q D Sbjct: 94 TAE------RKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD--GGTR 145 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184 ++ AAS AL +G+ V G V ++G VL+ ED + + + ++ + D Sbjct: 146 TAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSLDK 205 Query: 185 VLMVEL 190 VL+++L Sbjct: 206 VLLLQL 211 >gi|207093020|ref|ZP_03240807.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori HPKX_438_AG0C1] Length = 102 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 39/84 (46%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 22 RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 ++A+Q+ ++L G+T++LA+V +R +DF PL V + E++YA GKIPGG+++RE Sbjct: 19 QVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77 Query: 82 SRPTENEILISRMIDRSIRPLFSK 105 R + EIL SR+IDR++RPLF K Sbjct: 78 GRAQDFEILTSRLIDRTLRPLFPK 101 >gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] Length = 240 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 9/234 (3%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR +R I VG+L+ GS+ G T+ I V G RE Y L+ R Sbjct: 12 LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAV-YGPRE--VYPRHLALPDR 68 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 Y+ P +T + + APSRREI ++ R A+ ++ T+ + E+ + Sbjct: 69 ALIRCRYHMAPFSTSD-RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQ 127 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + + +SLAL DAG+P+ VAG+A+G V D +++ DI ED G D Sbjct: 128 ADGGTRTTGLTAASLALADAGIPMRDLVAGVAVGKV----DGVLVLDIDEVEDEYGEADM 183 Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 + G +GI + + G ++ AL AK G I M + L + L+ Sbjct: 184 PI-GYAAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLHKKYLK 236 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + + +DG+ YG T V+A V R + P + Y ++ Sbjct: 23 RPIKMDVG-VLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127 R+ P+ EI +S++I ++ L FS+ Y T V I V+Q D Sbjct: 82 TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD--GGTR 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL---FVSGTQD 183 + AAS AL +G+P V G V ++G VL+ ++++ G D+ + +G + Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193 Query: 184 AVLM 187 VL+ Sbjct: 194 IVLL 197 >gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 122 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 3/121 (2%) Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 I +K+K+ F + E + +V K +R+++LD+ +R DGR + +R IS Sbjct: 3 IKAIKEKVWEKFKDTYPE-QESYVSNVITKYVKKAMRSLILDEGLRADGRAMDELRPISC 61 Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYVDSLSGTQ-RNDFMMHYNFLPCAT 385 +V LL R HGS++F RG+TQA+VV TLG EDEQ +D L + FM+HYNF P + Sbjct: 62 EVSLLPRAHGSAVFTRGETQAMVVTTLGMFGEDEQILDGLKLDEPPKRFMLHYNFPPFSV 121 Query: 386 G 386 G Sbjct: 122 G 122 >gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] Length = 249 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ +I I+ G +E + L R Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSA-YIEWGKNKIIAAVYGPKE--LHPKHLQRPDRA 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR I ++ + A+ P L FP T + + E+ + Sbjct: 74 ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ VA A G + +G+ I+ D++ +ED+ G D Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G +++ + A++ A +G + + + L + L++ + Sbjct: 188 PVAIMPLRNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKDKYLKIAQ 243 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ +G+ ++A V + L P L V Y ++ Sbjct: 27 RPIKMEVG-VLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P I IS++I ++ P + + V I V+Q D + Sbjct: 86 VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P V I G+ VL+ +ED G D+ V+ Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190 >gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] Length = 242 Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 20/236 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R + +VG+L GS++ G T+ + V G RE Q L R Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAV-YGPREPLQKYTVLP--DRA 71 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T E + P+RRE+ ++ R A+ PV+ T FP T + + E+ + Sbjct: 72 SLFVRYHMAPFSTEE-RKSPVPTRREVEISKVLREALEPVV-ITELFPRTVIEVYVEVLQ 129 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 SDG + A+ +SLAL DAG+P+ VAG+A+G V D +++ D++ ED+ G D Sbjct: 130 SDGGTRTASATAASLALADAGIPMRALVAGVAIGKV----DNVVVLDLNEPEDNFGEADM 185 Query: 492 K-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 VA D G+ + ++ G VM +++ ++G L +S+++ + + L Sbjct: 186 PVVAAPDLGLITL---FQLNG------VMTVEETQKGLDMALKAISELVEKEKQTL 232 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 22/190 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+ ++ G + +DG+ + +YG+T VLA V R P L V Y ++ Sbjct: 25 RPVDMKVG-VLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLFVRYHMAPFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP-----LFSKCYKNETQVIINVMQHDLES 124 + R+ PT E+ IS+++ ++ P LF + +V + V+Q D Sbjct: 84 TEE------RKSPVPTRREVEISKVLREALEPVVITELFPRTV---IEVYVEVLQSD--G 132 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183 S AAS AL +G+P V G + ++ VL+ ED G D+ V D Sbjct: 133 GTRTASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADMPVVAAPD 192 Query: 184 AVLMVELEAN 193 L+ + N Sbjct: 193 LGLITLFQLN 202 >gi|153844108|ref|ZP_01993625.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] gi|149745259|gb|EDM56510.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] Length = 162 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 81/135 (60%) Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297 + L+ +++++ + L + I EK R +I ++ ++ ++ + EI ++F D Sbjct: 28 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 87 Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357 ++ VVR ++ R+D R+ + VR + + G+L RTHGS+LF RG+TQA+V TLGT+ Sbjct: 88 LEKTVVRRSIIAGNPRIDSREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 147 Query: 358 EDEQYVDSLSGTQRN 372 D Q +D L+G +++ Sbjct: 148 RDAQIIDELTGERKD 162 >gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] Length = 249 Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 10/182 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R + +VG+L+ +GS+L G T+ + V G RE ++ R Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAV-FGPRE--ALPRHIALPDRA 76 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P +T E + APSRREI ++ R A+ V+ + QFP T + I E+ + Sbjct: 77 TLRVRYHMAPFSTSE-RKSPAPSRREIELSKVIREALESVV-FSEQFPRTSIDIFIEVLQ 134 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + A + +S+AL DAG+P+ V G+A+G ++ ++ DIS ED G D Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDLVIGVAVGKIEGN----LVLDISELEDEYGEADL 190 Query: 492 KV 493 + Sbjct: 191 PL 192 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 16/170 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + + ++G+ L YG T VLA V R P L V Y ++ Sbjct: 30 RPVKIKVG-VLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLRVRYHMAPFS 88 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCY-KNETQVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ + FS+ + + + I V+Q D Sbjct: 89 TSE------RKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQAD--GGTR 140 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL 176 + AAS AL +G+P + V+G V I G VL+ L+++ G DL Sbjct: 141 TAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADL 190 >gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8] Length = 247 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 12/200 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R I +VG+L+R GS GD + I V G RE + + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPRE--MHPRHAQDAKMA 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 YN P +T + R G P RR + ++ R A PV+ + +P T + + E+ + Sbjct: 70 VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMREL-YPKTGIEVYVELLQ 127 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 SD + A + +S+AL DAG+P+ V+ IA+G K G + ++ D++ ED+ G D Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDLVSSIAVG--KIGGEMVL--DLNAAEDNNGEADM 183 Query: 492 KVA--GTDSGITAMQMDMKI 509 +A + ITA+QMD ++ Sbjct: 184 PIAMIARTNTITALQMDGRL 203 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G + +++DG+ G+ V+A V R + + QD V ++ Y + Sbjct: 23 RPIKIEVG-VLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129 +R P + IS++ + P + + Y K +V + ++Q D + Sbjct: 79 PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSD--AGTRTA 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P + V V I G+ VL+ ED G D+ ++ Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIA 186 >gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] Length = 333 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 26/255 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR ++ +R + +G+L R GS G+ + I V G RE QR Sbjct: 14 LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAV-YGPRELHPR-----RMQR 67 Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 D YN + + R G PSRR +++ A PV+ T +P T + + S Sbjct: 68 PDAAVIRYKYNMASFSVEDRQRPG-PSRRSSEISKVSSEAFEPVV-MTQFYPNTVIDVFS 125 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ E+D + A + ++LAL+DAG+P+ V+ A+G V D ++ D++ ED+ G Sbjct: 126 EVLEADAGTRTAAINAATLALIDAGIPLKSLVSACAVGKV----DGQLVLDLNKKEDNEG 181 Query: 488 HMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL-Q 545 D VA T G IT +QMD G ++E+ + A++ K G ++ ++ E+ L + Sbjct: 182 EADLPVAITQDGEITLLQMD---GHLTEDEIKQAMELVKNG----CQQIQQIQREALLKK 234 Query: 546 LGEFT-PRVEIMAIP 559 G++ EI ++P Sbjct: 235 FGQYEGADTEIQSVP 249 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 18/209 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69 RP+K++ G ++R +DG+ +G +++ V R L + D + Y +++ Sbjct: 25 RPMKVDIGVLSR-ADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVIRYKYNMASFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNETQVIINVMQHDLESSP-- 126 V R+ P+ IS++ + P+ ++ Y N +I+V LE+ Sbjct: 84 VED------RQRPGPSRRSSEISKVSSEAFEPVVMTQFYPN---TVIDVFSEVLEADAGT 134 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185 ++ AA+ AL+ +G+P + V V ++GQ VL+ ED +G DL V+ TQD Sbjct: 135 RTAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLPVAITQDGE 194 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPV 214 + + L+ED + A+ N C+ + Sbjct: 195 ITLLQMDGHLTEDEIKQAMELVKNGCQQI 223 >gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6] Length = 242 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+ GR E +R I VG+L+R GS F G+ +AI V G RE + + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAV-YGPRE--MHPRHFQNAKMA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P + + R G P RR ++R+A+ PV+ + + + E+ +S Sbjct: 71 VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ +A+G + DG+ ++ D+ ED+ G D Sbjct: 130 DAGTRTAGINAASVALADAGIPMKDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + IT +QMD ++ Sbjct: 186 IAMVARTNTITLLQMDGRL 204 >gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5] Length = 247 Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R I +VG+L+R GS GD + I V G RE + + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPRE--MHPRHAQDAKMA 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P +T + R G P RR + ++ R A PV+ + + + E+ +S Sbjct: 70 VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ IA+G + +G+ ++ D++ ED+ G D Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGE---MVLDLNAAEDNNGEADMP 184 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + ITA+QMD ++ Sbjct: 185 IAMIARTNTITALQMDGRL 203 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G + +++DG+ G+ V+A V R + + QD V ++ Y + Sbjct: 23 RPIKIEVG-VLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129 +R P + IS++ + P + + Y K +V + ++Q D + Sbjct: 79 PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD--AGTRTA 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P + V V ING+ VL+ ED G D+ ++ Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIA 186 >gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon] gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon] Length = 242 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+ GR E +R I VG+L+R GS F GD +A+ V G RE + + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAV-YGPRE--MHPRHFQNAKMA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P + + R G P RR ++R+A+ PV+ + + + E+ +S Sbjct: 71 VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ +A+G + DG+ ++ D+ ED+ G D Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + IT +QMD ++ Sbjct: 186 IAMIARTNTITLLQMDGRL 204 >gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] Length = 231 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 15/223 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 VR DGR + +R + + G+L+R GSS G + I+V G RE + + L R Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNK-ILVAVYGPREAQ--IRKLQRPDR 63 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR + ++ A+ P L +FP + + + E+ Sbjct: 64 AVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPAL-ILEKFPRSVIDVFIEVL 121 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 E++G + A + +S+AL DAG+P+ V A G V D ++ D+S +ED G D Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVNDQ----VVLDLSEEEDKAGQAD 177 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 VA IT +Q D G +S++ AL A G L I Sbjct: 178 VPVAILPRTREITLLQSD---GNLSDDEFERALDLAVEGCLRI 217 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69 RPL++E G I ++DG+ +G +L V R + D + Y ++ Sbjct: 18 RPLRIEAG-ILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 76 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R+ P + IS++ ++RP + K ++ V I V++ E Sbjct: 77 VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 128 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 + AAS AL +G+P VV +N Q VL+ +ED+ G D+ V+ Sbjct: 129 CAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVA 181 >gi|151944721|gb|EDN62980.1| RNA-dependent ATPase/ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789] Length = 1145 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647 + KI + A+IE + I S+ P ++K+Y+G+V + FG FV G R DGLV Sbjct: 150 STKIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 HIS++S +R DVV++G ++V+++ + GKI LSMK +DQ++G+ Sbjct: 210 HISEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258 >gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] Length = 242 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 19/201 (9%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSG 368 R DGR E +R I +VG+L+ GS++ G T ++ G RE E+ VD Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKT-VVLAAVYGPREVVPRHEEIVD---- 68 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 R Y L +T + APSRREI ++ R A+ P + ++ +P T + I Sbjct: 69 --RAVIRCRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAI-ISSMYPRTAIDIFV 125 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ ++G + A + +SLAL DAG+P++ VA +A+G + D +I+ D+ ED G Sbjct: 126 EVINANGGTRTAGITAASLALADAGIPLADLVAAVAVGKI----DGVIVLDLDELEDMYG 181 Query: 488 HMDFKVAGTDS--GITAMQMD 506 D +A S IT +Q++ Sbjct: 182 EADMPIAAMPSLNRITMLQLN 202 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69 RP+++E G + + +DG+ + G+TVVLA V R + ++ D + Y+ +++ Sbjct: 24 RPIRMEVG-VLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIRCRYRMLSFS 82 Query: 70 -VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128 +G+ R+ P+ EI +S++I ++ P T + I V + Sbjct: 83 TLGE------RKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINANGGTRT 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169 + AAS AL +G+P V V I+G VL+ LDE Sbjct: 137 AGITAASLALADAGIPLADLVAAVAVGKIDGVIVLD--LDE 175 >gi|259145919|emb|CAY79179.1| Prp22p [Saccharomyces cerevisiae EC1118] Length = 1145 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647 + KI + A+IE + I S+ P ++K+Y+G+V + FG FV G R DGLV Sbjct: 150 STKIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 HIS++S +R DVV++G ++V+++ + GKI LSMK +DQ++G+ Sbjct: 210 HISEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258 >gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] Length = 242 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 14/198 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED-EQYVDSLSGTQR 371 R+DGR E R ++ QVG+L +GS+L G+T ++ G RE +Y+ + + Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNT-VVLAAVYGPREPIPRYI---TVPDK 70 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430 + Y+ P +T + + AP+RREI ++ ++A+ V+ Q+P T+ + E+ Sbjct: 71 AVVRVRYHMAPFSTDD-RKNPAPTRREIEISKVVKQALETVV-FLEQYPKSTIDVFLEVL 128 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++DGS+ + ++ +SLAL DAG+P+ V G+++G + D ++ D++ ED+ G D Sbjct: 129 QADGSTRVTSITAASLALADAGIPMRDLVVGVSVGKIND----TVIVDLNKLEDNYGDGD 184 Query: 491 FK--VAGTDSGITAMQMD 506 +A + + MQ+D Sbjct: 185 LPIAIAYRKNWVLLMQLD 202 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 18/187 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+ ++ G + ++G+ L YG TVVLA V R P + V Y ++ Sbjct: 25 RPVTMQVG-VLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVRVRYHMAPFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127 R+ PT EI IS+++ +++ + F + Y T V + V+Q D S Sbjct: 84 TDD------RKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQAD--GSTR 135 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDA 184 V S+ AAS AL +G+P VVG V IN +++ ED G L + ++ ++ Sbjct: 136 VTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGDLPIAIAYRKNW 195 Query: 185 VLMVELE 191 VL+++L+ Sbjct: 196 VLLMQLD 202 >gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] Length = 246 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I +VG+L+ GS+ +I I+ G RE + L R Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSA-YIEWGKNKILAAVYGPRE--IHPKHLQRPDRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + YN P + E + G P RR + ++ R A+ P + FP T + + E+ + Sbjct: 73 ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAI-ILELFPRTAIDVFIEVLQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + +A + +SLAL DAG+P+ V+ A G ++ I+ D++ +ED+ G D Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQ----IVLDLNKEEDNYGEADV 186 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548 VA + IT +QMD G ++ + A++ A +G + + + L E +++ + Sbjct: 187 PVAIMPIKNDITLLQMD---GYLTREEFLEAVRLAIKGAKAVYQKQREALKEKYIKIAQ 242 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ +G+ +LA V R + P L V Y ++ Sbjct: 26 RPIKMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 84 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R++ P + IS++I ++ P + + V I V+Q D + Sbjct: 85 VEE------RKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQAD--AGTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179 V + AAS AL +G+P + V I GQ VL+ +ED G D+ V+ Sbjct: 137 VAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEADVPVA 189 >gi|6320850|ref|NP_010929.1| Prp22p [Saccharomyces cerevisiae S288c] gi|130830|sp|P24384|PRP22_YEAST RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 gi|4234|emb|CAA41530.1| PRP22 [Saccharomyces cerevisiae] gi|603605|gb|AAB64546.1| Prp22p: pre-mRNA splicing factor RNA helicase [Saccharomyces cerevisiae] gi|207346029|gb|EDZ72649.1| YER013Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256273758|gb|EEU08683.1| Prp22p [Saccharomyces cerevisiae JAY291] gi|285811636|tpg|DAA07664.1| TPA: Prp22p [Saccharomyces cerevisiae S288c] Length = 1145 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647 + KI + A+IE + I S+ P ++K+Y+G+V + FG FV G R DGLV Sbjct: 150 STKIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 HIS++S +R DVV++G ++V+++ + GKI LSMK +DQ++G+ Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258 >gi|227517|prf||1705293A RNA helicase-like protein Length = 1144 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647 + KI + A+IE + I S+ P ++K+Y+G+V + FG FV G R DGLV Sbjct: 150 STKIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 HIS++S +R DVV++G ++V+++ + GKI LSMK +DQ++G+ Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258 >gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] Length = 246 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR R + +VG++ GS+L G+T I+ G RE Q L + Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNT-VILAAVYGPREVPQ--KHLELPDKA 71 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431 + Y+ +P +T E + PSRREI ++ R A+ PV+ +FP T+ + E+ + Sbjct: 72 ILRVRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVV-ILERFPRTTIDVYIEVLQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DGS+ + + +SLAL DAG+P+ + G+++G V I+ D++ ED G D Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVGVSVGKVSG----TIIVDLNQLEDQYGEGDM 186 Query: 492 KVA--GTDSGITAMQMD 506 +A IT MQ D Sbjct: 187 PLAIMYGRGLITLMQAD 203 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+++E G I+ ++G+ L YG TV+LA V R + P L V Y ++ Sbjct: 25 RPVRMEVGVIS-NAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMIPFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI IS++I ++ P + + + V I V+Q D S Sbjct: 84 TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD--GSTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171 V + AAS AL +G+P +VG V ++G +++ EDQ Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQ 180 >gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212] gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212] Length = 181 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 24/190 (12%) Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334 M++ ++E +EG+IV +F +++++VR ++ + R+DGR +TVR + G+L R Sbjct: 1 MIAQITAEDEEISEGKIVDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPR 60 Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394 THGS++F RG+TQA+ V TLGT D Q +D + N+ M N+ Sbjct: 61 THGSAIFTRGETQALAVATLGTERDAQIIDEFN----NNGKMIKNWFEWEKD-------- 108 Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454 +R+EI P L T + L+ + EI +G + V GS+ L A Sbjct: 109 NRKEI-----------PKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLR-AARE 156 Query: 455 ISKPVAGIAM 464 +++P G + Sbjct: 157 LNRPSYGFEI 166 >gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2] gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2] Length = 246 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 14/245 (5%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L VR DGR + +R++ VG++ GS++ G T A+ V G RE + L Sbjct: 8 LLQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425 S R + Y+ P +T + + PSRREI ++ R A+ P + Q+P + + + Sbjct: 65 SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAI-VLEQYPRSRIDV 123 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 EI ++DGS+ +A++ +SLAL DAG+ + + + + DG ++ D++G ED Sbjct: 124 FVEILQADGSTRVASLTAASLALADAGIYM-RDLVVGVSVGLVDG---TVVLDLNGLEDQ 179 Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 G D + + T +Q+D G + ++ + AL A RG ++ L Sbjct: 180 YGEGDLPLGYMPNLKRFTLLQLD---GAWTRDMFLQALNLAVRGAEYVYQIARDALKNKY 236 Query: 544 LQLGE 548 + + E Sbjct: 237 MSIAE 241 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 14/136 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+ G + +DG+ + +YG T +A V R + P + V Y ++ Sbjct: 24 REVKIAVG-VVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 R+ P+ EI IS+++ ++ P + + ++ V + ++Q D S Sbjct: 83 TKD-----ERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD--GSTR 135 Query: 128 VVSMVAASAALMLSGL 143 V S+ AAS AL +G+ Sbjct: 136 VASLTAASLALADAGI 151 >gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] Length = 244 Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 12/197 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + R I + G L+ GSS GD + I+V G R+ + +S T Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNK-ILVGVFGPRD--VHPKHMSDTDTG 73 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ P + GE + APSRREI ++ + A+ P + +FP T + + E+ + Sbjct: 74 ILRVRYHMEPFSVGE-RKNPAPSRREIEISKVIKEALEPAV-MLEKFPRTAVDVFIEVLQ 131 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + A + +S+AL DAG+P+ VA IA G V D ++ D++ +ED G D Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVAD----TVILDVNNEEDQAGQADM 187 Query: 492 KVAGTDS--GITAMQMD 506 + + IT +Q+D Sbjct: 188 PIGYMPNLEKITLLQLD 204 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 20/202 (9%) Query: 25 RQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR 79 + +DG+ +G+ +L V V+ + + D D L V Y ++VG+ R Sbjct: 37 KNADGSSYIEFGDNKILVGVFGPRDVHPKHMSD-TDTGILRVRYHMEPFSVGE------R 89 Query: 80 RESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137 + P+ EI IS++I ++ P + K + V I V+Q D ++ AAS A Sbjct: 90 KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD--GGTRCAALTAASVA 147 Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDAVLMVELEANQ 194 L +G+P V + +L+ +EDQ G D+ + + + +++L+ Sbjct: 148 LADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEKITLLQLDG-V 206 Query: 195 LSEDVVLDAIIFGHNECKPVIE 216 L+ + I G + CK V E Sbjct: 207 LTPEEYKKCIQVGVDGCKLVYE 228 >gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1] Length = 245 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R I +VG+L+R GS G+ + I V G RE + + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPRE--MHPRHAQDAKMA 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P +T + R G P RR + ++ R A PV+ + + + E+ +S Sbjct: 70 VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQS 128 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ IA+G K G + ++ D++ ED+ G D Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVG--KIGGEMVL--DLNAAEDNNGEADMP 184 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + ITA+QMD ++ Sbjct: 185 IAMIARTNTITALQMDGRM 203 Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 12/171 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G + +++DG+ G V+A V R + + QD V ++ Y + Sbjct: 23 RPIKIEVG-VLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129 +R P + IS++ + P + + Y K V + ++Q D + Sbjct: 79 PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSD--AGTRTA 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P + V V I G+ VL+ ED G D+ ++ Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIA 186 >gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 258 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R I + +L+R GS G + I V G RE + + L + Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPRE--VHPEHLQDPSK 72 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR I ++++ A V+ + FP + + I E+ Sbjct: 73 AIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKEL-FPRSAIDIFVEVL 130 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D S A + +S+AL+DAGVP+ + +A+G D ++L D +ED+ G D Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVG---KADGQLVL-DPMKEEDNFGEAD 186 Query: 491 FKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 A G I +QMD G ++ + + A++ AK+G L I + + ++ Sbjct: 187 MPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIE 243 Query: 546 LGE 548 +GE Sbjct: 244 VGE 246 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 24/204 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E + +++DG+ G+ V+A V V+ L+D + Y + Sbjct: 27 RPIKIEAS-VLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAI-IRYRYNMAPF 84 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126 +V + R+ P I IS++ + + K ++ + + V+Q D S Sbjct: 85 SVEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS-- 136 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180 + AAS AL+ +G+P +G + V +GQ VL+P +ED G D L +G Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNG 196 Query: 181 TQDAVLMVELEANQLSEDVVLDAI 204 +++ +++++ +++ D V AI Sbjct: 197 KIESIALLQMDG-RMTRDEVKQAI 219 >gi|291532398|emb|CBL05511.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Megamonas hypermegale ART12/1] Length = 83 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 56/82 (68%) Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 MI ++T EV +YKG+V ++M+FGAFV ++GL HISQL+ ERV K DVV GD Sbjct: 1 MINALTAEVEVGAVYKGKVTRIMNFGAFVEILPGKEGLCHISQLAKERVGKVEDVVNIGD 60 Query: 669 TVWVKLLDFDDRGKIKLSMKVV 690 + VK+ + D +G++ LS KV+ Sbjct: 61 ELEVKVTEIDRQGRVNLSHKVL 82 >gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10] Length = 242 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+ GR E +R I +VG+L+R GS F G+ + I V G RE + + Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGV-YGPRE--MHPRHFQNAKMA 70 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P + + R G P RR ++R+A+ PV+ + + + E+ +S Sbjct: 71 VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ +A+G + DG+ ++ D+ ED+ G D Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + IT +QMD ++ Sbjct: 186 IAMIARTNTITLLQMDGRL 204 >gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5] Length = 247 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 10/199 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + +R I +VG+L+R GS G+ + I V G RE + + Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPRE--MHPRHAQDAKMA 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN P +T + R G P RR + ++ R A PV+ + + + E+ +S Sbjct: 70 VIKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + A + +S+AL DAG+P+ V+ IA+G + +G+ ++ D++ ED+ G D Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGE---VVLDLNAAEDNNGEADMP 184 Query: 493 VA--GTDSGITAMQMDMKI 509 +A + ITA+QMD ++ Sbjct: 185 IAMIARTNTITALQMDGRM 203 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71 RP+K+E G + +++DG+ G V+A V R + + QD + ++ Y + Sbjct: 23 RPIKIEVG-VLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIKFR---YNMA 78 Query: 72 KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129 +R P + IS++ + P + + Y K +V + ++Q D + Sbjct: 79 PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD--AGTRTA 135 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P + V V ING+ VL+ ED G D+ ++ Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIA 186 >gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] Length = 246 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR R + +VG+++ GS+L G+T I+ G RE Q L + Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNT-VILAAVYGPREVPQ--KHLELPDKA 71 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431 + Y+ P +T E + PSRREI ++ R A+ PV+ +FP T+ + E+ + Sbjct: 72 ILRVRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVV-ILERFPRTTIDVYIEVLQ 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DGS+ + + +SLAL DAG+P+ + G+++G V I+ D++ ED G D Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVGVSIGKVSG----TIVVDLNQLEDQYGEGDM 186 Query: 492 KVA--GTDSGITAMQMD 506 +A IT MQ D Sbjct: 187 PLAIMYGRGLITLMQAD 203 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+++E G I + ++G+ L YG TV+LA V R + P L V Y ++ Sbjct: 25 RPVRMEVGVI-KNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMAPFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 + R+ P+ EI IS++I ++ P + + + V I V+Q D S Sbjct: 84 TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD--GSTR 136 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171 V + AAS AL +G+P +VG + ++G V++ EDQ Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQ 180 >gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter thermautotrophicus str. Delta H] gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 15/223 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 VR DGR + +R + + G+L+R GSS G + I+V G RE + + L R Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNK-ILVAVYGPREAQ--IRKLQRPDR 72 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR + ++ A+ P L +FP + + + E+ Sbjct: 73 AVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPAL-ILEKFPRSVIDVFIEVL 130 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 E++G + A + +S+AL DAG+P+ V A G V GD ++ D+S +ED G D Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKV--GDQVVL--DLSEEEDKEGQAD 186 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 VA IT +Q D G ++ AL A G L I Sbjct: 187 VPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRI 226 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69 RPLK+E G I ++DG+ +G +L V R + D + Y ++ Sbjct: 27 RPLKIEAG-ILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R+ P + IS++ ++RP + K ++ V I V++ E Sbjct: 86 VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P VV + Q VL+ +ED +G D+ V+ Sbjct: 138 CAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVA 190 >gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304] gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304] Length = 258 Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R I + +L+R GS G + I V G RE + L + Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPRE--VHPRHLQDPSK 72 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR I ++++ A V+ + FP + + I E+ Sbjct: 73 AIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKEL-FPRSAIDIFVEVL 130 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D S A + +S+AL+DAGVP+ + +A+G D ++L D +ED+ G D Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVG---KADGQLVL-DPMKEEDNFGEAD 186 Query: 491 FKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 A G I +QMD G ++ + + A++ AK+G L I + + ++ Sbjct: 187 MPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIE 243 Query: 546 LGE 548 +GE Sbjct: 244 VGE 246 Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 24/204 (11%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E + +++DG+ G+ V+A V V+ R L+D + Y + Sbjct: 27 RPIKIEAS-VLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAI-IRYRYNMAPF 84 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126 +V + R+ P I IS++ + + K ++ + + V+Q D S Sbjct: 85 SVEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS-- 136 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180 + AAS AL+ +G+P +G + V +GQ VL+P +ED G D L +G Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNG 196 Query: 181 TQDAVLMVELEANQLSEDVVLDAI 204 +++ +++++ +++ D V AI Sbjct: 197 KIESIALLQMDG-RMTRDEVKQAI 219 >gi|213863109|ref|ZP_03386364.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 77 Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 1/74 (1%) Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLD 175 V+ + + +P +V+M+ ASAAL LSG+PF GP+ A+V YIN QYVLNP DE + LD Sbjct: 3 VVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 62 Query: 176 LFVSGTQDAVLMVE 189 L V+GT+ AVLMVE Sbjct: 63 LVVAGTEAAVLMVE 76 >gi|269863281|ref|XP_002651164.1| polyribonucleotide nucleotidyltransferase / polynucleotide adenylyltransferase [Enterocytozoon bieneusi H348] gi|220065021|gb|EED42891.1| polyribonucleotide nucleotidyltransferase / polynucleotide adenylyltransferase [Enterocytozoon bieneusi H348] Length = 100 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 57/85 (67%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EA + + IT + KIY G+V ++DFGAFV+ +D L+HIS LS RV K +D+ Sbjct: 6 EAGLQRVLGITAEARLGKIYVGKVEGIVDFGAFVNILPGKDVLIHISMLSDARVEKVTDI 65 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +KEG V V +LD D+RG+IKLS+K Sbjct: 66 LKEGQEVEVLVLDVDNRGRIKLSIK 90 >gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] Length = 254 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 14/233 (6%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +M+D K R+DGR +R I + G+L+R GS G + + V G RE + Sbjct: 7 LMIDGK-RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAV-YGPRE--VHPRH 62 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 L R YN + E R G P RR I +++R A+ V+ + + I Sbjct: 63 LQNASRAIVRYRYNMAAFSVEERKRPG-PDRRSIEISKVSREALESVVLEELYPRSAVDI 121 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 EI ++D + +A + +S+AL DAG+P+ V+ ++G + DG+ ++ D++ DED+ Sbjct: 122 FVEILQADAGTRVAGINAASVALADAGIPMRCLVSACSVGKI-DGE---VVLDLNKDEDN 177 Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 G D VA G +T QMD G ++E AL A G L+EM K Sbjct: 178 YGQADLPVAVNQFGEVTLCQMD---GHLTEEEFGKALDMAVDG-CKKLHEMQK 226 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 20/212 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K + G + +++DG+ +G V+A V V+ R L++ + Y + Sbjct: 23 RPIKFKAG-VLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAI-VRYRYNMAAF 80 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCY-KNETQVIINVMQHDLESSP 126 +V + R+ P I IS++ ++ + + Y ++ + + ++Q D + Sbjct: 81 SVEE------RKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQAD--AGT 132 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ-DA 184 V + AAS AL +G+P V V I+G+ VL+ DED G DL V+ Q Sbjct: 133 RVAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVAVNQFGE 192 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 V + +++ + L+E+ A+ + CK + E Sbjct: 193 VTLCQMDGH-LTEEEFGKALDMAVDGCKKLHE 223 >gi|190405574|gb|EDV08841.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Saccharomyces cerevisiae RM11-1a] Length = 1145 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647 + KI + A+I + I S+ P ++K+Y+G+V + FG FV G R DGLV Sbjct: 150 STKIPAKIEAKIGEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 HIS++S +R DVV++G ++V+++ + GKI LSMK +DQ++G+ Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258 >gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] Length = 253 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 14/234 (5%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R I Q G+L+R GS G + + V G RE + L Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAV-YGPRE--VHPRHLQQASNA 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 YN + E R G P RR I +++R A+ V+ + + I EI ++ Sbjct: 70 IVRYRYNMASFSVEERKRPG-PDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQA 128 Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492 D + +A + +S+AL DAG+P+ V+ A+G DD ++L D++ DED+ G D Sbjct: 129 DAGTRVAGINAASVALADAGIPMKCLVSACAVG---KADDTLVL-DLNKDEDNYGQADLP 184 Query: 493 VAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG--RLHILNEMSKVLSESR 543 +A G IT QMD G ++ + AL A G +LH L + + V +R Sbjct: 185 IAMNQFGEITLCQMD---GHMTSDEFSTALNMAIEGCKKLHELQKQALVEKYAR 235 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 18/177 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K + G + +++DG+ +G V+A V V+ R L+ + + Y ++ Sbjct: 23 RPIKFQAG-VLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAI-VRYRYNMASF 80 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126 +V + R+ P I IS++ ++ + + Y ++ + + ++Q D + Sbjct: 81 SVEE------RKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQAD--AGT 132 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182 V + AAS AL +G+P + V V + VL+ DED G DL ++ Q Sbjct: 133 RVAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPIAMNQ 189 >gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] Length = 297 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 16/227 (7%) Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 D+ +R+DGR + +R + ++G+L R GS G+ + + V G RE + Sbjct: 11 DEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAV-YGPRE----LHPRRM 65 Query: 369 TQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIV 426 + N+ ++ Y + + R+ PSRR +++ A PV+ T +P + + Sbjct: 66 QKPNEVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVV-MTQYYPGAVIDVF 124 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486 +E+ ++D + A + ++LAL DAG+P+ V+ A+G V D ++ D++ ED+ Sbjct: 125 AEVLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKV----DGQLVLDLNKPEDNY 180 Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 G D VA T G IT +QMD G ++ + L+ K+G I+ Sbjct: 181 GQADLPVAMTQDGEITLLQMD---GHLTPEELEEGLEMVKKGCQQII 224 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV----NYQERTYA 69 RP+K+E G ++R +DG+ +G VLA V R L + P V Y +++ Sbjct: 25 RPMKVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLVRYKYNMASFS 83 Query: 70 V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET--QVIINVMQHDLESSP 126 V +I G RR + IS++ + P+ Y V V+Q D + Sbjct: 84 VEDRIRPGPSRRSTE-------ISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQAD--AGT 134 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185 ++ AA+ AL +G+P +G V V ++GQ VL+ ED G DL V+ TQD Sbjct: 135 RTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLPVAMTQDGE 194 Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 + + L+ + + + + C+ +IE Sbjct: 195 ITLLQMDGHLTPEELEEGLEMVKKGCQQIIE 225 >gi|213422759|ref|ZP_03355805.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 52 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/50 (74%), Positives = 44/50 (88%) Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461 V+P +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI VAG Sbjct: 3 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 52 >gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM 3091] gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera stadtmanae DSM 3091] Length = 232 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 18/235 (7%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 M ++ +R DGR T+R++ +VG+L GS+ +I I+V G RE + S Sbjct: 1 MTNEFIRKDGRAYNTLRNMKMEVGVLNNADGSA-YIECGNNKILVGVYGPRE----IHSK 55 Query: 367 SGTQRNDFMMH--YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 ++ + ++ YN P + E R G P+RR +L AI P + ++ Sbjct: 56 KHSKPDGAVLRCKYNMAPFSVKERKRPG-PNRRSTEISKLISEAITPNIFLEKYPRASID 114 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I E+ E++G + + G+SLAL DA +P+ ++ A+G V DD I+L D+S ED Sbjct: 115 ISIEVLEAEGGTRCLGIVGASLALADAEIPMKDLISACAVGKV---DDHIVL-DLSEQED 170 Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 G D +A IT +QMD G +++ AL A G +I N++ K Sbjct: 171 QTGQADMPLAIIPRTGEITFLQMD---GNLTQEEFEEALDLAYDGCYYI-NQLQK 221 >gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC 35061] gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061] Length = 234 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 16/234 (6%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 M+ + +R DGR +R I + G+L+R GS+ G + I+V G RE Y+ L Sbjct: 1 MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRL 57 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RI 425 YN P + + R G P RR ++ A+ P L +P ++ I Sbjct: 58 LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDI 115 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 E+ E++G + A + +S+AL+DAG+P+ V G A G V +D IIL D+S ED Sbjct: 116 YIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKV---NDEIIL-DLSEVEDK 171 Query: 486 LGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 G D +A IT +Q D G +S+ A+ A G +NE+ K Sbjct: 172 EGQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 221 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69 RP+K+E G + R A L G +++A Y R L + + Y ++ Sbjct: 17 RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 75 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 V R+ P IS++ ++RP + V I + + E Sbjct: 76 VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188 + AAS AL+ +G+P + VVG +N + +L+ +++ +G D+ ++ + Sbjct: 130 GITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMMPRTGEIT 189 Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 L+++ LS++ +AI C+ V E I K A M Sbjct: 190 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 225 >gi|126330536|ref|XP_001381726.1| PREDICTED: similar to zinc finger, CCHC domain containing 17, [Monodelphis domestica] Length = 246 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 S+ D+P++ I++G+VV V ++GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 SLDDLPDLYTIFRGEVVTVTEYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +D+ K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDKVKLSLSMKVVNQGTGK 96 >gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] Length = 234 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 16/234 (6%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 M+ + +R DGR +R I + G+L+R GS+ G + I+V G RE Y+ L Sbjct: 1 MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRL 57 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RI 425 YN P + + R G P RR ++ A+ P L +P ++ I Sbjct: 58 LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDI 115 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 E+ E++G + A + +S+AL+DAG+P+ V G A G V D I+ D+S ED Sbjct: 116 YIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDK 171 Query: 486 LGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 G D +A IT +Q D G +S+ A+ A G +NE+ K Sbjct: 172 EGQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 221 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69 RP+K+E G + R A L G +++A Y R L + + Y ++ Sbjct: 17 RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 75 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 V R+ P IS++ ++RP + V I + + E Sbjct: 76 VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188 + AAS AL+ +G+P + VVG +N + VL+ +++ +G D+ ++ + Sbjct: 130 GITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGEIT 189 Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 L+++ LS++ +AI C+ V E I K A M Sbjct: 190 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 225 >gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM 11548] gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum calidifontis JCM 11548] Length = 246 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 14/245 (5%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L +R DGR + +R++ QVG + GS++ G T A+ V G RE + L Sbjct: 8 LLQNGLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAV-YGPRE--MHPRHL 64 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425 S R + Y+ P +T + + PSRREI ++ R A+ P + Q+P + + + Sbjct: 65 SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-MLEQYPRSRIDV 123 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 EI ++DGS+ +A++ +SLAL DAG+ + + + + DG ++ D++G ED+ Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGIYM-RDLVVGVSVGLVDG---TVVLDLNGLEDN 179 Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 G D V + T +Q+D G + + AL A +G ++ + L Sbjct: 180 YGEGDMPVGYMPNLRRFTLLQLD---GAWTREKFLEALGLAVKGAEYVYQVAREALKNKY 236 Query: 544 LQLGE 548 + + E Sbjct: 237 MAIAE 241 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R ++++ G ++ +DG+ + +YG T +A V R + P + V Y ++ Sbjct: 24 REVQIQVGTVS-NADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 R+ P+ EI IS+++ ++ P + + ++ V I ++Q D S Sbjct: 83 TKD-----ERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD--GSTR 135 Query: 128 VVSMVAASAALMLSGL 143 V S+ AAS AL +G+ Sbjct: 136 VASLTAASLALADAGI 151 >gi|167949191|ref|ZP_02536265.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 49 Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 33/48 (68%), Positives = 40/48 (83%) Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK 108 ++YQE+TYA GKIPGG+ RRE RP+E EIL SR+IDR IRPLF K Y+ Sbjct: 1 MDYQEKTYAAGKIPGGFFRREGRPSEKEILTSRLIDRPIRPLFPKGYQ 48 >gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19] gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19] Length = 239 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 15/234 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R + Q G+L+R GS+ G + IV G R E + R Sbjct: 14 LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANK-IVAAVYGPR--ELHPRHKQKPDR 70 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR I +L++ A+ P + T +P T + I E+ Sbjct: 71 AVVRFRYNMAPFSVDERKRPG-PDRRSIEISKLSKEALEPAI-FTEYYPRTAIDIFVEVL 128 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D + A + +S+AL DAG+ + VA A G V+ ++ D ED G D Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGK----VVLDPMYYEDGYGEAD 184 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 +A + IT +QMD G ++ A++ AK+G + E + L E Sbjct: 185 VPLAMMPKEGKITLLQMD---GDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEK 235 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69 RPLK++ G + +++DG+ G ++A V R L K D + Y ++ Sbjct: 25 RPLKIQAG-VLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMAPFS 83 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127 V + R+ P I IS++ ++ P +F++ Y + + + V+Q D + Sbjct: 84 VDE------RKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQAD--AGTR 135 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170 + AAS AL +G+ V + G+ VL+P ED Sbjct: 136 CAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYED 178 >gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 243 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 12/201 (5%) Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 D +R+DGR +R I +VG+L+R GS+ FI I+ G E Y + Sbjct: 10 DNGLRIDGRLPNQLRPIKMEVGVLKRADGSA-FIEWGGNKIIAAVYGPHE--AYPKHVQE 66 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 R Y+ P + E R G P RR I ++ A+ V+ ++P T + + Sbjct: 67 ADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVI-FVEKYPRTSIDVYI 124 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ ++D + +A + +SLAL DAG+P+ + G A G + DD ++L D++ +ED+ G Sbjct: 125 EVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKI---DDVVVL-DLNKEEDNFG 180 Query: 488 HMDFKVA--GTDSGITAMQMD 506 D +A I +QMD Sbjct: 181 QADVPMAIMPRTKEIALLQMD 201 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + +++DG+ +G ++A V Y + +++ D + Y + Sbjct: 24 RPIKMEVG-VLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA-DRAIVRARYSMAPF 81 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126 +V + R+ P I +S++I ++ +F + Y + V I V+Q D + Sbjct: 82 SVDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQAD--AGT 133 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171 V + AS AL +G+P +VG I+ VL+ +ED Sbjct: 134 RVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDN 178 >gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 245 Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 12/201 (5%) Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 D +R+DGR +R I +VG+L+R GS+ FI I+ G E Y + Sbjct: 12 DNGLRIDGRLPNQLRPIKMEVGVLKRADGSA-FIEWGGNKIIAAVYGPHE--AYPKHVQE 68 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 R Y+ P + E R G P RR I ++ A+ V+ ++P T + + Sbjct: 69 ADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVI-FVEKYPRTSIDVYI 126 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ ++D + +A + +SLAL DAG+P+ + G A G + DD ++L D++ +ED+ G Sbjct: 127 EVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKI---DDVVVL-DLNKEEDNFG 182 Query: 488 HMDFKVA--GTDSGITAMQMD 506 D +A I +QMD Sbjct: 183 QADVPMAIMPRTKEIALLQMD 203 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + +++DG+ +G ++A V Y + +++ D + Y + Sbjct: 26 RPIKMEVG-VLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA-DRAIVRARYSMAPF 83 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126 +V + R+ P I +S++I ++ +F + Y + V I V+Q D + Sbjct: 84 SVDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQAD--AGT 135 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171 V + AS AL +G+P +VG I+ VL+ +ED Sbjct: 136 RVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDN 180 >gi|29351673|gb|AAH49283.1| Pnpt1 protein [Mus musculus] Length = 235 Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 GT+ GITA+Q D+K+ G+ I++ A+QQA + IL M+K +S+ R E P VE Sbjct: 1 GTNKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVE 60 Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614 + +P + +G GG ++ + +TG ++ D+ T I + + + AR+ I I Sbjct: 61 TVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEIC 120 Query: 615 -----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-G 667 E +Y + ++ D G V + L+H SQL ++ + + E G Sbjct: 121 RDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVG 180 Query: 668 DTVWVKLLDFDDR-GKIKLSMKVV 690 + VK D G+++LS KV+ Sbjct: 181 QEIQVKYFGRDPADGRMRLSRKVL 204 >gi|324501835|gb|ADY40813.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [Ascaris suum] Length = 1223 Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 4/87 (4%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669 I + P V KIY G+V + FGAFV G R +GL+HISQ+ ERV +DV+ G Sbjct: 249 IDEEPVVGKIYTGRVNSIQSFGAFVQLEGFRQRFEGLLHISQIRKERVNAVADVLNRGQK 308 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696 + VK+L F++ GKI LSMK VDQ+TG+ Sbjct: 309 IKVKVLKFEN-GKISLSMKEVDQDTGE 334 >gi|328710981|ref|XP_001948871.2| PREDICTED: ATP-dependent RNA helicase DHX8-like [Acyrthosiphon pisum] Length = 1251 Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 3/96 (3%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTE-RVAKT 660 E + I S + PE+ K+Y G+V+ ++DFG FV R GLVHISQL + RV Sbjct: 279 ERHEKEIESKSKFPELGKVYAGKVLNIVDFGCFVQLDMFRQSQGLVHISQLRQKGRVTSV 338 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SDVV GD V VK+L KI LSMK VDQ+TG+ Sbjct: 339 SDVVSRGDKVMVKVLSISGNQKISLSMKDVDQDTGE 374 >gi|17535281|ref|NP_495019.1| Masculinisation Of Germline family member (mog-5) [Caenorhabditis elegans] gi|2500543|sp|Q09530|MOG5_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5; AltName: Full=Masculinization of germline protein 5; AltName: Full=Sex determination protein mog-5 gi|733602|gb|AAC46765.1| Masculinisation of germline protein 5, confirmed by transcript evidence [Caenorhabditis elegans] gi|9864170|gb|AAG01332.1| sex determining protein MOG-5 [Caenorhabditis elegans] Length = 1200 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++V E+ KIY G+V + FGAF+ G R +GLVHISQ+ ERV +DV+K G+ V Sbjct: 228 SEVAEIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENV 287 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696 VK+ ++ GKI LSMK VDQN+G+ Sbjct: 288 KVKVNKIEN-GKISLSMKEVDQNSGE 312 >gi|310796591|gb|EFQ32052.1| helicase associated domain-containing protein [Glomerella graminicola M1.001] Length = 1198 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 15/122 (12%) Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 ++Q + N DD+ + + E++ D P+++KIY G V + DFGAFV Sbjct: 198 LKQKSRRRNYDDEDDGRFRRAPEPEVD----------DAPQLHKIYGGHVTGIKDFGAFV 247 Query: 638 HFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 + G R DGLVHIS+L +RV SD++ +G VWVK++ + +I LSMK VDQ Sbjct: 248 NIHGVRGKVDGLVHISRLVDGQRVNHPSDLLTKGQEVWVKVVSMEG-NRIGLSMKEVDQE 306 Query: 694 TG 695 TG Sbjct: 307 TG 308 >gi|167947926|ref|ZP_02535000.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 MDFGAFV +DGLVHISQ+S ERV K SD + EGD + VK+L+ D +G+I+LSMK V Sbjct: 1 MDFGAFVTILPGKDGLVHISQISNERVEKVSDKLSEGDNIRVKVLEVDKQGRIRLSMKAV 60 Query: 691 DQ 692 ++ Sbjct: 61 EE 62 >gi|147856641|emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera] Length = 1162 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +D PE+ +YKG+V +VMD G FV ++GLVH+SQ++T RV DVVK V+ Sbjct: 226 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 285 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VK++ + K+ LSM+ VDQNTG+ ++ Sbjct: 286 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 312 >gi|322694281|gb|EFY86115.1| ATP-dependent RNA helicase DHX8 [Metarhizium acridum CQMa 102] Length = 1196 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQ-LSTERVAKTSDVVKEGD 668 I D P++NK+Y+G V V DFGAFV H G DGLVHIS+ ++ +RV SD++ +G Sbjct: 222 IDDAPKLNKVYQGHVTGVRDFGAFVNIHHVRGKVDGLVHISRIIAGQRVNHPSDLLSKGQ 281 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VWVK+ + +I LSMK VDQ TG Sbjct: 282 DVWVKVTSIEG-NRIGLSMKDVDQETG 307 >gi|159163874|pdb|2CQO|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human Hypothetical Protein Flj11067 Length = 119 Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 15 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 74 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 75 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 103 >gi|296207298|ref|XP_002750581.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Callithrix jacchus] gi|296207300|ref|XP_002750582.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Callithrix jacchus] Length = 241 Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|225439090|ref|XP_002268493.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 1219 Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +D PE+ +YKG+V +VMD G FV ++GLVH+SQ++T RV DVVK V+ Sbjct: 261 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 320 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VK++ + K+ LSM+ VDQNTG+ ++ Sbjct: 321 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 347 >gi|109000926|ref|XP_001098481.1| PREDICTED: nucleolar protein of 40 kDa isoform 4 [Macaca mulatta] gi|109000928|ref|XP_001098574.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Macaca mulatta] gi|90077370|dbj|BAE88365.1| unnamed protein product [Macaca fascicularis] Length = 241 Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|291399417|ref|XP_002716156.1| PREDICTED: zinc finger, CCHC domain containing 17 [Oryctolagus cuniculus] Length = 201 Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|74179802|dbj|BAE36478.1| unnamed protein product [Mus musculus] Length = 185 Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|225439092|ref|XP_002268542.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 1175 Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +D PE+ +YKG+V +VMD G FV ++GLVH+SQ++T RV DVVK V+ Sbjct: 217 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 276 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VK++ + K+ LSM+ VDQNTG+ ++ Sbjct: 277 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 303 >gi|119628028|gb|EAX07623.1| zinc finger, CCHC domain containing 17, isoform CRA_c [Homo sapiens] Length = 226 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|23346607|ref|NP_694800.1| nucleolar protein of 40 kDa [Mus musculus] gi|73921229|sp|Q9ESX4|NO40_MOUSE RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName: Full=Putative S1 RNA-binding domain protein; Short=PS1D protein; AltName: Full=Zinc finger CCHC domain-containing protein 17 gi|9843775|emb|CAC03718.1| PS1D protein [Mus musculus] gi|17390897|gb|AAH18382.1| Zinc finger, CCHC domain containing 17 [Mus musculus] gi|29165675|gb|AAH49231.1| Zinc finger, CCHC domain containing 17 [Mus musculus] gi|29568410|gb|AAO83392.1| LDC4 [Mus musculus] gi|74214498|dbj|BAE31100.1| unnamed protein product [Mus musculus] gi|74223177|dbj|BAE40725.1| unnamed protein product [Mus musculus] gi|148698192|gb|EDL30139.1| mCG13527 [Mus musculus] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|21361576|ref|NP_057589.2| nucleolar protein of 40 kDa [Homo sapiens] gi|114555227|ref|XP_001158793.1| PREDICTED: putative S1 RNA binding domain protein isoform 6 [Pan troglodytes] gi|114555229|ref|XP_001158835.1| PREDICTED: putative S1 RNA binding domain protein isoform 7 [Pan troglodytes] gi|114555231|ref|XP_001158878.1| PREDICTED: putative S1 RNA binding domain protein isoform 8 [Pan troglodytes] gi|114555233|ref|XP_001158920.1| PREDICTED: putative S1 RNA binding domain protein isoform 9 [Pan troglodytes] gi|114555235|ref|XP_001158971.1| PREDICTED: nucleolar protein of 40 kDa isoform 10 [Pan troglodytes] gi|73921227|sp|Q9NP64|NO40_HUMAN RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName: Full=Pnn-interacting nucleolar protein; AltName: Full=Putative S1 RNA-binding domain protein; Short=PS1D protein; AltName: Full=Zinc finger CCHC domain-containing protein 17 gi|7106876|gb|AAF36163.1|AF151077_1 HSPC243 [Homo sapiens] gi|7023499|dbj|BAA91984.1| unnamed protein product [Homo sapiens] gi|10433933|dbj|BAB14066.1| unnamed protein product [Homo sapiens] gi|10436319|dbj|BAB14799.1| unnamed protein product [Homo sapiens] gi|13938589|gb|AAH07446.1| Zinc finger, CCHC domain containing 17 [Homo sapiens] gi|29792265|gb|AAH50609.1| Zinc finger, CCHC domain containing 17 [Homo sapiens] gi|55665390|emb|CAH71849.1| zinc finger, CCHC domain containing 17 [Homo sapiens] gi|119628026|gb|EAX07621.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo sapiens] gi|119628029|gb|EAX07624.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo sapiens] gi|123993141|gb|ABM84172.1| zinc finger, CCHC domain containing 17 [synthetic construct] gi|124000131|gb|ABM87574.1| zinc finger, CCHC domain containing 17 [synthetic construct] gi|261859994|dbj|BAI46519.1| zinc finger, CCHC domain containing 17 [synthetic construct] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] Length = 233 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 16/229 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR +R I + G+L+R GS+ G + I+V G RE Y+ L Sbjct: 5 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRLLEPNT 61 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSEIT 430 YN P + + R G P RR ++ A+ P L +P ++ I E+ Sbjct: 62 GVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDIYIEVI 119 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 E++G + A + +S+AL+DAG+P+ V G A G V D I+ D+S ED G D Sbjct: 120 EAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDKEGQAD 175 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 +A IT +Q D G +S+ A+ A G +NE+ K Sbjct: 176 VPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 220 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69 RP+K+E G + R A L G +++A Y R L + + Y ++ Sbjct: 16 RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 74 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129 V R+ P IS++ ++RP + V I + + E Sbjct: 75 VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 128 Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188 + AAS AL+ +G+P + VVG +N + VL+ +++ +G D+ ++ + Sbjct: 129 GITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGEIT 188 Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 L+++ LS++ +AI C+ V E I K A M Sbjct: 189 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 224 >gi|149694142|ref|XP_001503960.1| PREDICTED: similar to zinc finger, CCHC domain containing 17 [Equus caballus] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|33875741|gb|AAH00685.1| ZCCHC17 protein [Homo sapiens] Length = 234 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|332254544|ref|XP_003276389.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Nomascus leucogenys] Length = 240 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|73950483|ref|XP_535332.2| PREDICTED: similar to putative S1 RNA binding domain protein [Canis familiaris] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|114555237|ref|XP_001158210.1| PREDICTED: putative S1 RNA binding domain protein isoform 1 [Pan troglodytes] Length = 203 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|255011564|ref|ZP_05283690.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis 3_1_12] Length = 101 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 2/90 (2%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+ A +I+ I VPE+ ++YKG+V +M +GAFV F +DGL+HIS++ +R+ + Sbjct: 5 IDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEE 64 Query: 663 V-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +KEGD + VKL+D D + GK KLS KV+ Sbjct: 65 AGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 94 >gi|157816901|ref|NP_001102737.1| nucleolar protein of 40 kDa [Rattus norvegicus] gi|149024094|gb|EDL80591.1| similar to PS1D protein (predicted) [Rattus norvegicus] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|77736247|ref|NP_001029824.1| nucleolar protein of 40 kDa [Bos taurus] gi|74354076|gb|AAI02396.1| Zinc finger, CCHC domain containing 17 [Bos taurus] gi|95769249|gb|ABF57421.1| putative S1 RNA binding domain protein [Bos taurus] gi|296490195|gb|DAA32308.1| zinc finger, CCHC domain containing 17 [Bos taurus] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|301777191|ref|XP_002924018.1| PREDICTED: nucleolar protein of 40 kDa-like [Ailuropoda melanoleuca] Length = 241 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|90075056|dbj|BAE87208.1| unnamed protein product [Macaca fascicularis] Length = 241 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GL+H + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLIHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96 >gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M] gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M] Length = 233 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 32/232 (13%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGRD +RD ++G++ + GS+ G+T AI V L G ++ Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLK-----------PGREQ 49 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430 ++ + Y LP A E +G +RREI + +A+ P + + PY T+ EI Sbjct: 50 SNLKVSYRMLPFAGEERKGLGL-TRREIELSYIIAKALEPAII-FEEIPYLTIEASVEII 107 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------------KDGDDFIILSD 478 ++D + +A + SLAL AG+P+ V IA+G V +D D II + Sbjct: 108 KADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKE 167 Query: 479 ISGDEDHLGH---MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 + ++ G +D +A + IT +Q+D G I ++ A++ K G Sbjct: 168 LPQYYEYYGEGKAVDIPMAMYKNKITLLQLD---GSIDRKSLLEAIKLGKDG 216 >gi|46195824|ref|NP_996861.1| nucleolar protein of 40 kDa [Gallus gallus] gi|41059103|gb|AAR99080.1| PS1D [Gallus gallus] Length = 239 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +PE+ I++G+V V ++GAF+ G R GLVH + +S+ R+ K S+VV GD VWVKL Sbjct: 4 LPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEVVDVGDKVWVKL 63 Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696 + DD+ K+ LSMKVV+Q TGK Sbjct: 64 IGKEMKDDKLKLSLSMKVVNQGTGK 88 >gi|157833853|pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures Length = 76 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 54/71 (76%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G V VK+L+ Sbjct: 4 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 63 Query: 678 DDRGKIKLSMK 688 D +G+I+LS+K Sbjct: 64 DRQGRIRLSIK 74 >gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5] gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens Hrk 5] Length = 245 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 15/230 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R + + G+L+ GS+ G+ + + V G RE ++L R Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAV-YGPREPMPRHEALP--DRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 Y+ LP + E + PSRREI ++ R A+ P + ++P T + + I E Sbjct: 73 ILKCRYSMLPFSVAE-RKSPQPSRREIELSKVIREALAPAV-FLNEYPRTSIEVYIHILE 130 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + A++ S+AL DAG+ + VA IA+G + + +++ DI+G ED G D Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGN----VLVLDINGIEDQYGDGDM 186 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 +A IT +Q D G + + AL+ A++ I E + L Sbjct: 187 PIAMMPQRGEITLLQAD---GVFTPQEIEEALRLAQKAFQKIYAEQVRAL 233 >gi|326932842|ref|XP_003212521.1| PREDICTED: nucleolar protein of 40 kDa-like [Meleagris gallopavo] Length = 239 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +PE+ I++G+V V ++GAF+ G R GLVH + +S+ R+ K S++V GD VWVKL Sbjct: 4 LPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEIVDVGDKVWVKL 63 Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696 + DD+ K+ LSMKVV+Q TGK Sbjct: 64 IGKEIKDDKLKLSLSMKVVNQGTGK 88 >gi|322798596|gb|EFZ20200.1| hypothetical protein SINV_03476 [Solenopsis invicta] Length = 1206 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 8/95 (8%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 +++ PEV KIY G+V ++ FG FV G R +GLVHISQL E RVA SDVV G Sbjct: 245 TLSSEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRG 304 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699 V VK+L+ + K+ LSMK VDQ TG+ P+V Sbjct: 305 QKVLVKVLNVGGQ-KVSLSMKDVDQETGRDLNPVV 338 >gi|312384431|gb|EFR29163.1| hypothetical protein AND_02133 [Anopheles darlingi] Length = 1308 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 5/94 (5%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662 R+ + + PEV KIY +VV ++ FG FV G R +GLVHISQLSTE RV +D Sbjct: 334 RQRTPPMPEEPEVGKIYDARVVNIVAFGCFVQLVGFRRKKEGLVHISQLSTEGRVNLVTD 393 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 VV GD V VK++ KI LSMK V+Q+TG+ Sbjct: 394 VVNRGDDVKVKVMSLAG-NKISLSMKEVEQSTGR 426 >gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] Length = 243 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 26/240 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R + +G+L+ +GS+L G+T+A+ V G RE +S R Sbjct: 13 LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAV-YGPRE--AMPKHISLPDR 69 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430 + Y+ P +T E + APSRREI ++ R A+ V+ T Q+P ++ + EI Sbjct: 70 AVLRVRYHMAPFSTSE-RKSPAPSRREIELSKVIREALESVV-FTTQYPRASIDVFIEIL 127 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++DG + A + +SLAL DAG+P+ + +G+ +++ DI+ ED G D Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKD----LVIGVAVGKVGGVLVLDINELEDEYGEAD 183 Query: 491 FKV--AGTDSGITAMQ-------------MDMKIGGISENIMVMALQQAKRGRLHILNEM 535 V A + I +Q M+M G+ E I +A + R L +L E+ Sbjct: 184 LPVGIAPNTNEIVLLQLNGVLTPEEFKQAMEMAFKGV-EQIYKVAKEAMYRKYLKMLEEV 242 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 15/139 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+++ G + + ++G+ L YG T LA V R P L V Y ++ Sbjct: 24 RPVRIAIG-VLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLRVRYHMAPFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127 + R+ P+ EI +S++I ++ + F+ Y + V I ++Q D Sbjct: 83 TSE------RKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQAD--GGTR 134 Query: 128 VVSMVAASAALMLSGLPFE 146 + AAS AL +G+P + Sbjct: 135 TAGLTAASLALADAGIPMK 153 >gi|255539416|ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1177 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 PE+ ++YKG+V +VMD G FV R +GLVH+SQ++T R+A DVVK V+VK+ Sbjct: 220 PELYRVYKGRVSRVMDSGCFVQLNDFRGKEGLVHVSQMATRRIANAKDVVKRDQDVFVKV 279 Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699 + + K+ LSM+ VDQN+GK ++ Sbjct: 280 ISVSGQ-KLSLSMRDVDQNSGKDLL 303 >gi|307169908|gb|EFN62417.1| ATP-dependent RNA helicase DHX8 [Camponotus floridanus] Length = 1204 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/90 (53%), Positives = 56/90 (62%), Gaps = 8/90 (8%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 PEV KIY G+V ++ FG FV G R +GLVHISQL E RVA SDVV G V V Sbjct: 248 PEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRGQKVLV 307 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK---PIV 699 K+L + K+ LSMK VDQ TGK P+V Sbjct: 308 KVLSVGGQ-KVSLSMKDVDQETGKDLNPVV 336 >gi|222622658|gb|EEE56790.1| hypothetical protein OsJ_06372 [Oryza sativa Japonica Group] Length = 953 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PE+ ++Y+G+V +VMD G FV G R+GLVHISQ++T RVA ++VK V+VK Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ + K+ LSM+ VDQ+TG+ ++ Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363 >gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 245 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V+LD+ +R DGR R ++ +VG+L+ GS+ +I I+ G R+ + Sbjct: 9 VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 +S + Y+ P + E + APSRREI ++ + A+ P + +FP T + Sbjct: 66 HMSNPDTGILRVRYHMAPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DG + A + +S+AL DAG+P+ V A G V D ++ D++ +E Sbjct: 124 DVYLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKVADA----LILDVNNEE 179 Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506 D G D + + IT +Q+D Sbjct: 180 DQAGQADMPIGYMPNFGKITLLQLD 204 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 18/203 (8%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78 + + +DG+ +G +LA V R + P L V Y ++V + Sbjct: 35 VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMAPFSVSE------ 88 Query: 79 RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 R+ P+ EI IS+++ ++ P + K + V + V+Q D ++ AAS Sbjct: 89 RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGTRCAALDAASV 146 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193 AL +G+P V + +L+ +EDQ G D+ + + + +++L+ Sbjct: 147 ALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGYMPNFGKITLLQLDG- 205 Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216 L+ D I G CK V E Sbjct: 206 VLTTDEFKKCIELGIEGCKQVYE 228 >gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] Length = 245 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 22/227 (9%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--EDEQYVDSLSGTQ 370 R+DGR + +R I + G+L+ GS G + + V G R + + D Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAV-YGPRKVQPKHLADPTQAIV 71 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429 R YN P + E R G P RR + +++R A+ ++ + FP + + I E+ Sbjct: 72 R----YRYNMAPFSVEERKRPG-PDRRSVEISKVSREALESIIMKEL-FPRSSIDIFVEV 125 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ++D S A + +S+AL+DAG+P+ + +A+ V D +++ D +ED+ G Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPMKGIITSVAVAKV----DGVLVLDPMKEEDNYGEA 181 Query: 490 DFKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D A G I +QMD G +++ ++ A++ AK+G + I Sbjct: 182 DIPFAFFIRNGKIESIALLQMD---GRVTKEELMQAVELAKKGAMEI 225 Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 21/199 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+E G + + +DG+ G+ V+A V R ++ P + Y ++ Sbjct: 23 RPIKIEAG-VLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVRYRYNMAPFS 81 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127 V + R+ P + IS++ ++ + K ++ + + V+Q D S Sbjct: 82 VEE------RKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQADAGS--R 133 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL----FV-SGT 181 + AAS AL+ +G+P +G + V ++G VL+P +ED G D+ F+ +G Sbjct: 134 TACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFAFFIRNGK 193 Query: 182 QDAVLMVELEANQLSEDVV 200 +++ +++++ E+++ Sbjct: 194 IESIALLQMDGRVTKEELM 212 >gi|46121247|ref|XP_385178.1| hypothetical protein FG05002.1 [Gibberella zeae PH-1] Length = 1195 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 8/92 (8%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P+++K+Y+G V + DFG FV+ + DGLVH+S++ST +RV SD+V +G Sbjct: 218 VDDSPQLHKVYQGHVTGLKDFGCFVNLHNVKGRVDGLVHVSRMSTGQRVNHPSDLVTQGQ 277 Query: 669 TVWVKLLDFDD----RGKIKLSMKVVDQNTGK 696 VWVK+ D R ++ LSMK VDQ G+ Sbjct: 278 EVWVKVTSLDKDQNGRDRVGLSMKDVDQQNGQ 309 >gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus fervidus DSM 2088] gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus fervidus DSM 2088] Length = 236 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 16/229 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 VR DGR +R + + G+L+R GSS +I + I+ G R+ + + + R Sbjct: 11 VRKDGRAYNELRPVKIKAGVLKRADGSS-YIELGSNKILAAVYGPRDPQ--ITKIKRPDR 67 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN P + E R G P RR I ++ A+ P + +FP + + I E+ Sbjct: 68 AIIRCRYNMAPFSVEERKRPG-PDRRSIEISKITAEALAPSI-ILEKFPRSSIDIFIEVL 125 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 E+DG + A + +S+AL DAG+P+ V + G V + ++L D++ +ED G D Sbjct: 126 EADGGTRCAGITAASVALADAGIPLRDLVVACSAGKV---NGHVVL-DLTEEEDKEGEAD 181 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 VA IT +Q+D G ++ + A+ A G + I N++ K Sbjct: 182 VPVAIMPRTKEITLLQVD---GELTPEELEKAIDLAIEGCMSI-NKLQK 226 Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K++ G + +++DG+ G +LA V R + + P + Y ++ Sbjct: 22 RPVKIKAG-VLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAIIRCRYNMAPFS 80 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R+ P I IS++ ++ P + K ++ + I V++ D Sbjct: 81 VEE------RKRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEAD--GGTR 132 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179 + AAS AL +G+P VV +NG VL+ +ED +G D+ V+ Sbjct: 133 CAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVA 185 >gi|48716672|dbj|BAD23339.1| putative RNA helicase [Oryza sativa Japonica Group] Length = 1240 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PE+ ++Y+G+V +VMD G FV G R+GLVHISQ++T RVA ++VK V+VK Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ + K+ LSM+ VDQ+TG+ ++ Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363 >gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 245 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V+LD+ +R DGR R ++ + G+L+ GS+ +I I+ G R+ + Sbjct: 9 VLLDENGIRCDGRKVNETRKVTIKAGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 LS + Y+ P + E + APSRREI ++ + A+ P + +FP T + Sbjct: 66 HLSNPDTGILRVRYHMEPFSVDE-RKNPAPSRREIEISKVVKEALEPAV-ILEKFPRTVI 123 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DG + A + +S+AL DAG+P+ V A G V D ++ D++ +E Sbjct: 124 DVFLEVLQADGGTRCAALDAASVALADAGIPMRDMVCACAAGKVAD----TLIIDVNNEE 179 Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506 D G D V + +T +Q+D Sbjct: 180 DQAGQADMPVGYMPNLGKVTLLQLD 204 Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 16/172 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R + ++ G + + +DG+ +G +LA V R + P L V Y ++ Sbjct: 27 RKVTIKAG-VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGILRVRYHMEPFS 85 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V + R+ P+ EI IS+++ ++ P + K + V + V+Q D Sbjct: 86 VDE------RKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQAD--GGTR 137 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178 ++ AAS AL +G+P V + +++ +EDQ G D+ V Sbjct: 138 CAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQADMPV 189 >gi|156836886|ref|XP_001642483.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM 70294] gi|156113018|gb|EDO14625.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM 70294] Length = 1143 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 4/84 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672 P VNKIYKG+V + FG FV G + DGLVHISQLS + +++ V++ Sbjct: 184 PIVNKIYKGKVRSITSFGCFVQILGTKKINCDGLVHISQLSQHHINDPYEIISVNQIVYI 243 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K++ GKI LSMK VDQ TG+ Sbjct: 244 KVIKVQRNGKISLSMKEVDQKTGR 267 >gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] Length = 243 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 16/234 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R D R + +R + + G+L+R GS+ G + + V G RE +V L + Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAV-YGPRE--LFVRRLMQPNKA 75 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEITE 431 YN P + + R G P RR + +LA +A+ P + +FP T+ + E+ E Sbjct: 76 VLRCKYNMAPFSVDDRKRPG-PDRRSVEISKLASQALTPAV-FLEKFPRSTIDVFIEVIE 133 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 ++G + A + +S+AL DAG+P+ V A G D +IL D+S ED G D Sbjct: 134 AEGGTRCAGITAASVALADAGIPMRDMVVACAAG---KSDGKVIL-DLSEVEDKEGQADV 189 Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543 +A IT +QMD G ++E AL A G I++E K ++R Sbjct: 190 PIAIMPRTGEITLLQMD---GNLTEEEFEQALDLAING-CKIISEKQKAAIKNR 239 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 19/212 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+E G + R +DG+ G VLA V R L + P L Y ++ Sbjct: 29 RKMKIEAGVLER-ADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLRCKYNMAPFS 87 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 V R+ P + IS++ +++ P K ++ V I V++ E Sbjct: 88 VDD------RKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEA--EGGTR 139 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184 + AAS AL +G+P VV +G+ +L+ ED Q + + + Sbjct: 140 CAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVPIAIMPRTGE 199 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216 + +++++ N L+E+ A+ N CK + E Sbjct: 200 ITLLQMDGN-LTEEEFEQALDLAINGCKIISE 230 >gi|125539090|gb|EAY85485.1| hypothetical protein OsI_06862 [Oryza sativa Indica Group] Length = 1240 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PE+ ++Y+G+V +VMD G FV G R+GLVHISQ++T RVA ++VK V+VK Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ + K+ LSM+ VDQ+TG+ ++ Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363 >gi|332029746|gb|EGI69615.1| ATP-dependent RNA helicase DHX8 [Acromyrmex echinatior] Length = 1198 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/95 (49%), Positives = 59/95 (62%), Gaps = 8/95 (8%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 +++ PEV KIY G+V ++ FG FV G R +GLVHISQL E RVA SDVV G Sbjct: 237 TLSAEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRG 296 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699 V VK+L + K+ LSMK VDQ TG+ P+V Sbjct: 297 QKVLVKVLSVGGQ-KVSLSMKDVDQETGRDLNPVV 330 >gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] Length = 246 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 11/196 (5%) Query: 301 KVVRTVMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359 +V++ ++D+ +R+DGR + +R + +VG+L++T GS+ G T+ I +G RE Sbjct: 3 EVMKIRLIDENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTR-IYAGVIGPRE- 60 Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 + L + Y+ + E +G +RREI ++ R A+ V+ +F Sbjct: 61 -VHPKHLELPDKGVINCRYHMASFSVDERKPLGM-TRREIELSKVIREALETVV-FLEEF 117 Query: 420 P-YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 P + I E+ ++DG + A + +SLAL DAG+P++ +A IA+G V D +++ D Sbjct: 118 PRMMIDIFVEVIQADGGTRTAGITAASLALADAGIPMADMIAAIAVGKV----DGVLVLD 173 Query: 479 ISGDEDHLGHMDFKVA 494 I+ ED G D VA Sbjct: 174 INEQEDKYGEADMPVA 189 >gi|66558592|ref|XP_623289.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Apis mellifera] Length = 1192 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 11/103 (10%) Query: 607 REMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAK 659 R RS+ ++ PEV KIY G+V ++ FG FV G + +GLVHISQL E RVA Sbjct: 223 RSRSRSVEELSMDPEVGKIYSGKVANIVPFGCFVQLEGLKRRWEGLVHISQLRREGRVAS 282 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699 SDVV G V VK+L+ + K+ LSMK VDQ TG+ P+V Sbjct: 283 ASDVVSRGQKVLVKVLNIGGQ-KVSLSMKDVDQETGRDLNPVV 324 >gi|307198400|gb|EFN79342.1| ATP-dependent RNA helicase DHX8 [Harpegnathos saltator] Length = 1232 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 53/84 (63%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 PEV KIY G+V ++ FG FV G R +GLVHISQL E RVA SDVV G V V Sbjct: 269 PEVGKIYAGKVANIVPFGCFVSLEGLRRRLEGLVHISQLRREGRVANASDVVSRGQRVLV 328 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L + K+ LSMK VDQ TG+ Sbjct: 329 KVLSIGGQ-KVSLSMKDVDQETGR 351 >gi|50304197|ref|XP_452048.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641180|emb|CAH02441.1| KLLA0B11638p [Kluyveromyces lactis] Length = 1111 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672 P ++K+Y G+V V FG FV G R DGLVH+S+LS+ V K DVV V+V Sbjct: 176 PVLDKVYPGKVQNVTKFGCFVRIFGVRNTNVDGLVHVSELSSSHVDKPEDVVHRNQDVFV 235 Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695 K++ + GKI L+MK +DQ+TG Sbjct: 236 KVIKIQNNGKISLAMKGIDQSTG 258 >gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM 639] gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639] Length = 243 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 10/190 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++L+ +R DGR + +R I ++G+L+ GS++F G+T+ I V G + E + Sbjct: 9 LILENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPK--EMHPRH 65 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 L+ + + Y+ P +T E + APSRREI ++ R A+ + FP T + Sbjct: 66 LALPDKASLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESTI-LLNLFPRTVID 123 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I E+ ++D + + + +S+AL DAG+P+ +AG+A+G D ++L D++ ED Sbjct: 124 IFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVG---KADGSLVL-DLNEQED 179 Query: 485 HLGHMDFKVA 494 G D +A Sbjct: 180 MWGEADMPIA 189 >gi|261878983|ref|ZP_06005410.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM 17361] gi|270334440|gb|EFA45226.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM 17361] Length = 141 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 2/90 (2%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I+AA I+ I +PEV ++Y+G V +M +G FV ++GL+HIS++ +R+A D Sbjct: 3 IDAALNKIKGIVAIPEVGEVYEGTVKSIMPYGCFVEILPGKEGLLHISEIEWKRLATVED 62 Query: 663 V-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690 +KEGD + VKLLD D + GK KLS +V+ Sbjct: 63 AGIKEGDKIQVKLLDIDAKTGKYKLSHRVL 92 >gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 245 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V+LD+ +R DGR R ++ +VG+L+ GS+ +I I+ G R+ + Sbjct: 9 VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 +S + Y+ P + E + APSRREI ++ + A+ P + +FP T + Sbjct: 66 HMSNPDTGILRVRYHMEPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DG S A + +S+AL DAG+P+ V A G D ++ D++ +E Sbjct: 124 DVYLEVLQADGGSRCAALDAASVALADAGIPMRDMVCSCAAGKAADA----LILDVNNEE 179 Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506 D G D + + IT +Q+D Sbjct: 180 DQAGQADMPIGYMPNLGKITLLQLD 204 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 18/203 (8%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78 + + +DG+ +G +LA V R + P L V Y ++V + Sbjct: 35 VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSE------ 88 Query: 79 RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 R+ P+ EI IS+++ ++ P + K + V + V+Q D ++ AAS Sbjct: 89 RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGSRCAALDAASV 146 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193 AL +G+P V +L+ +EDQ G D+ + + + +++L+ Sbjct: 147 ALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGYMPNLGKITLLQLDG- 205 Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216 L+ D I G CK V E Sbjct: 206 VLTTDEFKKCIELGLEGCKQVYE 228 >gi|1402875|emb|CAA66825.1| RNA helicase [Arabidopsis thaliana] gi|1495271|emb|CAA66613.1| RNA helicase [Arabidopsis thaliana] Length = 1121 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 PE+ ++YKG+V +VMD G FV F R +GLVH+SQ++T RV K + VK V+VK+ Sbjct: 164 PELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVKRDMEVYVKV 223 Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699 + K LSM+ VDQNTG+ ++ Sbjct: 224 ISISS-DKYSLSMRDVDQNTGRDLI 247 >gi|15231574|ref|NP_189288.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana] gi|27735187|sp|Q38953|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gi|9293935|dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332643657|gb|AEE77178.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] Length = 1168 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 PE+ ++YKG+V +VMD G FV F R +GLVH+SQ++T RV K + VK V+VK+ Sbjct: 211 PELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVKRDMEVYVKV 270 Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699 + K LSM+ VDQNTG+ ++ Sbjct: 271 ISISS-DKYSLSMRDVDQNTGRDLI 294 >gi|255030650|ref|ZP_05302601.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes LO28] Length = 106 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 53/80 (66%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++Y G+V ++ FGAFV DGLVHIS+L+ ERV K D++K GD V VK+++ Sbjct: 5 EVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEV 64 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D +G++ LS K + + +P Sbjct: 65 DQQGRVNLSRKALLEKKEQP 84 >gi|323697658|ref|ZP_08109570.1| RNA binding S1 domain protein [Desulfovibrio sp. ND132] gi|323457590|gb|EGB13455.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans ND132] Length = 486 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 K++ DD G +KI SL+ E A+ +++ V I G+VV++ DFGAFV Sbjct: 260 KLDKDDKGRLKI---SLSMKELAQNPWDTLSATFAVGDIVSGKVVRLADFGAFVEIAPGV 316 Query: 644 DGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 DGLVH+S++S T+RV K +D+VKEGD V VK+ D D+ +I LSMK Sbjct: 317 DGLVHVSEMSYTKRVNKPADMVKEGDAVTVKIKSIDLDKRRIGLSMK 363 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 22/214 (10%) Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV----LSESR 543 ++ V G DSG +++ I GI M L++AK G L + ++ + + Sbjct: 82 KVELYVVGKDSG--GIKLSRAISGIGGMAM---LEEAKAGALPVEGKVESTCKGGFNVTI 136 Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603 LQ F P +I A + +G + + +E G + ++ +L E Sbjct: 137 LQRRAFCPVSQIDARFVENPEEYVGQTLEFLITKLENHGR--------NIVVSRRALVER 188 Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA E ++ D +V +G V ++ FGAFV +GLVHISQL RV+ +V Sbjct: 189 EAA-ESAQTFVDETKVGDEVEGTVTRLAAFGAFVEIMPGLEGLVHISQLGYGRVSHPEEV 247 Query: 664 VKEGDTVWVKL--LDFDDRGKIK--LSMKVVDQN 693 V G V K+ LD DD+G++K LSMK + QN Sbjct: 248 VSVGQKVRAKITKLDKDDKGRLKISLSMKELAQN 281 >gi|322708306|gb|EFY99883.1| ATP-dependent RNA helicase DHX8 [Metarhizium anisopliae ARSEF 23] Length = 1196 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQ-LSTERVAKTSDVVKEGD 668 I D P+++K+Y+G V V DFGAFV H G DGLVHIS+ ++ +RV SD++ +G Sbjct: 222 IDDAPQLHKVYQGHVTGVRDFGAFVNLHHVRGKVDGLVHISRIIAGQRVNHPSDLLSKGQ 281 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VWVK+ + +I LSM+ VDQ TG Sbjct: 282 DVWVKVTSVEG-NRIGLSMRDVDQETG 307 >gi|308493535|ref|XP_003108957.1| CRE-MOG-5 protein [Caenorhabditis remanei] gi|308247514|gb|EFO91466.1| CRE-MOG-5 protein [Caenorhabditis remanei] Length = 1208 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 4/86 (4%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++V EV KIY G+V + FGAF+ G R +GL HISQ+ ERV +DV+K G +V Sbjct: 239 SEVAEVGKIYDGRVNSIQTFGAFITLEGFRQKQEGLAHISQIRNERVQSVADVLKRGQSV 298 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696 VK+ ++ GKI L+MK VDQ+TG+ Sbjct: 299 KVKVNKIEN-GKISLTMKEVDQSTGE 323 >gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] Length = 253 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 14/246 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR ++ +R + +VG+L R GS G + I V G R E + L R Sbjct: 16 LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAV-YGPR--EVHPRHLQEVTR 72 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN + E R G P RR +++R A+ PV+ T+ FP + + + E+ Sbjct: 73 AIVRYRYNMASFSVEERKRPG-PDRRSYELSKVSREALEPVI-LTSFFPRSVIDVFVEVL 130 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D + A + +++AL DAG+P+ ++ A G V D I+ D +ED+ G D Sbjct: 131 QADAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGD----TIVLDPMKEEDNFGQAD 186 Query: 491 FKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549 +A T +G IT MQMD G ++ + A+ A +G I + L Q+ Sbjct: 187 LPIAMTPNGDITLMQMD---GNLTPDEFGQAVTMAMKGAKDIYELQRRALVAKYSQISTD 243 Query: 550 TPRVEI 555 + R E+ Sbjct: 244 SAREEV 249 >gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi] gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi] Length = 248 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 11/201 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR S +R+I ++ L R GS+ + +G+T+ + V G RE + S R Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAV-YGPREVKN--KSQMKNDR 69 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 Y+ +TGE R RR + R+ V+ T +P T + I ++ Sbjct: 70 AIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVI-LTHLYPRTQIDIFMQVL 128 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++DG + A + ++LAL+DAG+P+ V A G ++ L+D++ ED G D Sbjct: 129 QADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSP----LTDLNYIEDCAGGPD 184 Query: 491 FKVA--GTDSGITAMQMDMKI 509 +A +T +QMD K+ Sbjct: 185 VPIALLPKHDKVTLLQMDSKL 205 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 19/214 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYA 69 R +K + +R +DG+ G T VLA V R +K+ D + Y T++ Sbjct: 24 RNIKFKLNLFSR-ADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY-KNETQVIINVMQHDLESSPHV 128 G+ + +++ R TE ++I + + I + Y + + + + V+Q D Sbjct: 83 TGERKRQF-KKDRRSTEISVVIRQTFESVI---LTHLYPRTQIDIFMQVLQAD--GGTRC 136 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS--GTQDAV 185 + AA+ AL+ +G+P + VV +I G + + ED G D+ ++ D V Sbjct: 137 ACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKV 196 Query: 186 LMVELEANQLSED---VVLDAIIFGHNECKPVIE 216 ++++++ +LS D VL+ I G + VI+ Sbjct: 197 TLLQMDS-KLSLDQFEKVLEHAIEGCKQIHKVID 229 >gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM 6242] gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides burtonii DSM 6242] Length = 343 Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 12/222 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R ++ ++G+L R GS G+ + + V G RE + L Sbjct: 14 LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAV-YGPRE--LHPRRLQRPSE 70 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 YN + + R G PSRR +++ A V+ + + + +E+ + Sbjct: 71 ALVRYRYNMAAFSVEDRIRPG-PSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQ 129 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +D + A + ++LAL+DAG+P+ VA A+G V D ++ D++ ED+ G D Sbjct: 130 ADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKV----DGQLVIDLNKPEDNYGDADL 185 Query: 492 KVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 +A T+ G IT +QMD G ++ + + ++ ++G I Sbjct: 186 PIAMTEDGEITLLQMD---GNLTADEIAKGVEMVRKGCEQIF 224 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 21/218 (9%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+ +E G ++R +DG+ +G VLA V R L + P + Y ++ Sbjct: 25 RPMTVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALVRYRYNMAAFS 83 Query: 70 V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET--QVIINVMQHDLESSP 126 V +I G RR + IS++ + + K + V V+Q D + Sbjct: 84 VEDRIRPGPSRRSTE-------ISKVSGEAFETVVMKQFYPGAVIDVFAEVLQAD--AGT 134 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA- 184 ++ AA+ AL+ +G+P +G V V ++GQ V++ ED G DL ++ T+D Sbjct: 135 RTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDADLPIAMTEDGE 194 Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222 + +++++ N L+ D + + C+ + AI K A Sbjct: 195 ITLLQMDGN-LTADEIAKGVEMVRKGCEQIF-AIQKEA 230 >gi|170593781|ref|XP_001901642.1| ATP-dependent helicase DHX8 [Brugia malayi] gi|158590586|gb|EDP29201.1| ATP-dependent helicase DHX8, putative [Brugia malayi] Length = 1193 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 4/87 (4%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669 I P V IY G+V + +FGAFV G R +GL+HISQ+ +R++ SDV+K Sbjct: 223 INLAPVVGHIYSGRVTSIQNFGAFVQLEGLRQRFEGLLHISQIRQDRISAVSDVLKRNQK 282 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ F + GKI LSMK VDQ TG+ Sbjct: 283 VKVKVIKF-ELGKIGLSMKEVDQETGE 308 >gi|296236363|ref|XP_002763291.1| PREDICTED: nucleolar protein of 40 kDa-like [Callithrix jacchus] Length = 241 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ +P + I+ G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMEKLPALYTIFHGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 WVKL+ +DR + LSMKVV+Q TGK Sbjct: 68 WVKLIGREMKNDRITVSLSMKVVNQGTGK 96 >gi|224116862|ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1| predicted protein [Populus trichocarpa] Length = 1171 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 3/88 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++ PE+ +YKG+V +VMD G FV ++GLVH+SQ++T RV DVVK V+ Sbjct: 211 SNEPELYGVYKGRVSRVMDTGCFVELSDFKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 270 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VK++ K+ LSM+ VDQN+GK ++ Sbjct: 271 VKVISVSG-NKLSLSMRDVDQNSGKDLL 297 >gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM 13514] gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum arsenaticum DSM 13514] Length = 246 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 5/148 (3%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 +L VR DGR + +R++ VG++ GS++ G T A+ V G RE + L Sbjct: 8 LLQNGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64 Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425 S R + Y+ P +T + + PSRREI ++ R A+ P + Q+P + + + Sbjct: 65 SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-LLEQYPRSRIDV 123 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV 453 EI ++DGS+ +A++ +SLAL DAG+ Sbjct: 124 FIEIIQADGSTRVASLTAASLALADAGI 151 Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 R +K+ G + +DG+ + +YG T +A V R + P + V Y ++ Sbjct: 24 REVKISVG-VVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127 R+ P+ EI IS+++ ++ P L + ++ V I ++Q D S Sbjct: 83 TKD-----ERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD--GSTR 135 Query: 128 VVSMVAASAALMLSGL 143 V S+ AAS AL +G+ Sbjct: 136 VASLTAASLALADAGI 151 >gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG5E24] Length = 245 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V+LD+ +R DGR R ++ +VG+L+ GS+ +I I+ G R+ + Sbjct: 9 VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 +S + Y+ P + E + APSRREI ++ + A+ P + +FP T + Sbjct: 66 HMSNPDTGILRVRYHMEPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DG + A + +S+AL DAG+P+ V A G D ++ D++ +E Sbjct: 124 DVYLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKAAD----TLILDVNNEE 179 Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506 D G D + + IT +Q+D Sbjct: 180 DQAGQADMPIGYMPNFGKITLLQLD 204 Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 18/203 (8%) Query: 23 IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78 + + +DG+ +G +LA V R + P L V Y ++V + Sbjct: 35 VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSE------ 88 Query: 79 RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136 R+ P+ EI IS+++ ++ P + K + V + V+Q D ++ AAS Sbjct: 89 RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGTRCAALDAASV 146 Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193 AL +G+P V +L+ +EDQ G D+ + + + +++L+ Sbjct: 147 ALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGYMPNFGKITLLQLDG- 205 Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216 L+ D I G CK V E Sbjct: 206 VLTTDEFKKCIELGIEGCKQVYE 228 >gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT] gi|118134043|gb|ABK61087.1| rpsA [Clostridium novyi NT] Length = 387 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +VN I +G+VVK++DFGAFV G +GLVHI++++ E +AK SDV+K+GD V VK+L+ Sbjct: 284 KVNDIVEGKVVKLLDFGAFVEILGGVEGLVHITEITDENIAKPSDVLKKGDKVKVKILEI 343 Query: 678 DDRGK-IKLSMKVVDQNTGKPI 698 ++ K I LS+K + + I Sbjct: 344 NENDKRIALSIKDAENKVAEEI 365 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/70 (54%), Positives = 46/70 (65%), Gaps = 2/70 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683 G V ++ FGAFV G DGL+H S LS ERV SDVVK GD V V +LDF D GKI Sbjct: 206 GVVRRLAKFGAFVDLGGV-DGLIHNSDLSWERVNNPSDVVKVGDKVEVYVLDFHKDTGKI 264 Query: 684 KLSMKVVDQN 693 LS+K V+++ Sbjct: 265 ALSLKNVEED 274 >gi|220929150|ref|YP_002506059.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium cellulolyticum H10] gi|219999478|gb|ACL76079.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium cellulolyticum H10] Length = 672 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 3/97 (3%) Query: 594 KIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 K+ S+ IE +E S I D E+ K YKGQV +MDFGAFV G DGLVH+S+L Sbjct: 449 KVVGSARILIEKNKEAASSLIWDSIEIGKTYKGQVKSLMDFGAFVDIGGV-DGLVHLSEL 507 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S ++ S+VVK GD + V +LDFD ++ +I L K Sbjct: 508 SWNKIRHPSEVVKVGDEIIVSVLDFDKEKKRISLGYK 544 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+VV+++ FGAFV DGLVHISQ+S+ R+ K D +K G V K+++F Sbjct: 559 QVGNVVSGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALKVGQQVDAKIIEF 618 Query: 678 D-DRGKIKLSMKVVD 691 D + KI LS+K V+ Sbjct: 619 DTESKKISLSIKEVN 633 >gi|254582208|ref|XP_002497089.1| ZYRO0D15180p [Zygosaccharomyces rouxii] gi|238939981|emb|CAR28156.1| ZYRO0D15180p [Zygosaccharomyces rouxii] Length = 1103 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672 P +NKIY G++ + FG FV G + DGLVHIS+++ RV + D+V+ G V++ Sbjct: 178 PILNKIYPGRIKNITAFGCFVQIHGTQEKNSDGLVHISEMTNHRVRRPQDLVQLGQEVFI 237 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698 K++ G + LSMK +DQ TG+ I Sbjct: 238 KVIKLQKNGNVSLSMKNIDQLTGQEI 263 >gi|242041913|ref|XP_002468351.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor] gi|241922205|gb|EER95349.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor] Length = 1242 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PE+ ++Y+G+V +VMD G FV G +GLVH+SQ+++ RVA +VVK V+VK Sbjct: 283 PELYEVYRGRVTRVMDTGCFVRLEDVRGGHEGLVHVSQMASRRVANAKEVVKRDQEVYVK 342 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ + K+ LSM+ VDQ+TGK ++ Sbjct: 343 VVSVKGQ-KLSLSMRDVDQDTGKDLL 367 >gi|225706462|gb|ACO09077.1| Nucleolar protein of 40 kDa [Osmerus mordax] Length = 228 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 5/101 (4%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA 658 +AE E A E + +P + I+KG+VV V +GAFV G + GLVH+S++S RV Sbjct: 1 MAEFEEAEE-PGGLDGLPTMYGIFKGEVVSVQTYGAFVKLPGYQKQGLVHVSEMSACRVE 59 Query: 659 KTSDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696 S++V G+ VW+K++ DD+ K+ SMK V+Q TG+ Sbjct: 60 NASEIVDVGEQVWIKVIGKEVRDDKVKLSFSMKAVNQGTGR 100 >gi|332799296|ref|YP_004460795.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Tepidanaerobacter sp. Re1] gi|332697031|gb|AEE91488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Tepidanaerobacter sp. Re1] Length = 668 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + I +G+VVK+++FGAFV +GLVHISQ+S E +A DV+KEGD+V VK+LD D Sbjct: 563 IGSIIEGKVVKLVNFGAFVEVAPGVEGLVHISQISQEHIANPEDVLKEGDSVKVKILDVD 622 Query: 679 DRGK-IKLSMK 688 +GK + LS+K Sbjct: 623 TKGKRMSLSIK 633 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++ FGAFV G DGL+HIS L+ +++ S++VKE V V +L D +R + Sbjct: 483 KGVVKRLTGFGAFVDIGGV-DGLIHISDLAWQKIKHPSEIVKEEQEVEVLVLKVDKERER 541 Query: 683 IKLSMKVVDQN 693 I L +K + N Sbjct: 542 ISLGLKQIMPN 552 >gi|195124361|ref|XP_002006662.1| GI21186 [Drosophila mojavensis] gi|193911730|gb|EDW10597.1| GI21186 [Drosophila mojavensis] Length = 1260 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 ++D PEV KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 294 MSDDPEVGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 353 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ TG+ Sbjct: 354 TVKVKVMSLAGQ-KVSLSMKEVDQETGR 380 >gi|312068671|ref|XP_003137323.1| hypothetical protein LOAG_01737 [Loa loa] gi|307767517|gb|EFO26751.1| hypothetical protein LOAG_01737 [Loa loa] Length = 693 Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 4/89 (4%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEG 667 R ++ P V IY G+V+ + FGAF+ G R +GL+HISQ+ +RV SDV+ Sbjct: 214 RRMSLAPIVGHIYNGRVISIQSFGAFIQLEGLRQRFEGLLHISQIRQDRVNAVSDVLNRN 273 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ F + GKI LSMK VDQ TG+ Sbjct: 274 QKVKVKVIKF-ELGKIGLSMKEVDQETGQ 301 >gi|21428730|gb|AAM50025.1| SD07467p [Drosophila melanogaster] Length = 1242 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 ++TD PE KIY G++ ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ++GK Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364 >gi|320593610|gb|EFX06019.1| ATP-dependent RNA helicase dhx8 [Grosmannia clavigera kw1407] Length = 1241 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 15/129 (11%) Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 GK RG + G + DDG S E+E + D PE+ K+Y G V + Sbjct: 222 GKSGRGRANRNG--YDNYDDGNGNDGRSQRKEVE--------VDDAPELFKVYDGHVTGI 271 Query: 631 MDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 DFGAFV+ G R DGLVH+S L +RV+ SD++ G V VK++ + +I LS Sbjct: 272 KDFGAFVNLHGIRGKVDGLVHVSALVDGQRVSHPSDLLTMGQKVLVKVVKIEG-SRIGLS 330 Query: 687 MKVVDQNTG 695 MK VDQ+TG Sbjct: 331 MKDVDQDTG 339 >gi|20129977|ref|NP_610928.1| peanuts [Drosophila melanogaster] gi|7303231|gb|AAF58294.1| peanuts [Drosophila melanogaster] gi|201065755|gb|ACH92287.1| FI05376p [Drosophila melanogaster] Length = 1242 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 ++TD PE KIY G++ ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ++GK Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364 >gi|195334242|ref|XP_002033793.1| GM21509 [Drosophila sechellia] gi|194125763|gb|EDW47806.1| GM21509 [Drosophila sechellia] Length = 1242 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 ++TD PE KIY G++ ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ++GK Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364 >gi|163915365|gb|AAI57135.1| Unknown (protein for IMAGE:7523839) [Xenopus (Silurana) tropicalis] Length = 177 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 4/88 (4%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671 + ++PE+ I+KG+V V D+GAF+ G R GLVH S +S+ V + S+VV G+ VW Sbjct: 1 MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60 Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGK 696 VK++ D + K+ LSMKVV+Q GK Sbjct: 61 VKVIGRETKDGKEKVSLSMKVVNQGDGK 88 >gi|62857343|ref|NP_001017183.1| zinc finger, CCHC domain containing 17 [Xenopus (Silurana) tropicalis] gi|41353967|gb|AAS01425.1| putative S1 RNA binding domain protein [Xenopus (Silurana) tropicalis] gi|89272111|emb|CAJ81714.1| novel S1 RNA binding domain and zinc knuckle containing protein (ortholog of human putative S1 RNA binding domain protein PS1D) [Xenopus (Silurana) tropicalis] Length = 234 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 4/88 (4%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671 + ++PE+ I+KG+V V D+GAF+ G R GLVH S +S+ V + S+VV G+ VW Sbjct: 1 MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60 Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGK 696 VK++ D + K+ LSMKVV+Q GK Sbjct: 61 VKVIGRETKDGKEKVSLSMKVVNQGDGK 88 >gi|307136047|gb|ADN33898.1| ATP-dependent RNA helicase [Cucumis melo subsp. melo] Length = 953 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ PE+ +YKG+V +VMD G FV R +GLVH+SQ++T R++ DVVK V Sbjct: 263 VSHEPELYTVYKGRVSRVMDTGCFVQLNDFRGKEGLVHVSQIATRRISNAKDVVKRDQEV 322 Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 +VK++ + K+ LSM+ VDQ++GK ++ Sbjct: 323 YVKVISVSGQ-KLSLSMRDVDQHSGKDLL 350 >gi|316973788|gb|EFV57343.1| ATP-dependent RNA helicase DHX8 [Trichinella spiralis] Length = 1176 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669 + D P V KIY G+V + DFG FV G R +GLVHISQ+ ERV SDVV G Sbjct: 200 LDDTPTVGKIYDGRVNSLRDFGCFVELFGLRRHVEGLVHISQMKDERVNAVSDVVTRGQK 259 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK+L + LSM+ VDQ TG+ Sbjct: 260 VKVKVLA-SSGNRTSLSMREVDQETGE 285 >gi|126307880|ref|XP_001363005.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica] Length = 1196 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + +IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 232 RPPPEEPSIGEIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 291 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 292 GQRVKVKVLSFTG-TKTSLSMKDVDQDTGE 320 >gi|254674298|emb|CBA10082.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 88 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%) Query: 618 EVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 EV K+Y+G VVK++D GA V +DGLVHISQ++ ERV D ++ G V VK L Sbjct: 2 EVAKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKAL 61 Query: 676 DFDDRGKIKLSMK 688 + DDRG+++LS+K Sbjct: 62 EVDDRGRVRLSIK 74 >gi|115929959|ref|XP_001193417.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8, partial [Strongylocentrotus purpuratus] Length = 784 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673 PEV ++Y+G+V VM +G FV R +GLVHIS+L E RVA+ +DVV +G V VK Sbjct: 161 PEVGEVYEGKVTSVMQYGCFVQLSLRRRCEGLVHISELRKEGRVAEVTDVVSKGQQVKVK 220 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L KI+LSMK VDQN+G+ Sbjct: 221 VLSIAG-TKIRLSMKDVDQNSGE 242 >gi|224086631|ref|XP_002195343.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Taeniopygia guttata] Length = 1199 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 235 RPPAEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 294 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 295 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 323 >gi|195058010|ref|XP_001995368.1| GH22675 [Drosophila grimshawi] gi|193899574|gb|EDV98440.1| GH22675 [Drosophila grimshawi] Length = 1243 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 ++D PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 276 LSDDPEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 335 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ TG+ Sbjct: 336 TVKVKVMSLAGQ-KVSLSMKEVDQETGR 362 >gi|297282801|ref|XP_001098380.2| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Macaca mulatta] Length = 233 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 7/91 (7%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGD 668 ++ + E NK+Y V V D+GAF+ G R GLVH + +S+ RV K S++V GD Sbjct: 1 MKQLIKATEKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGD 57 Query: 669 TVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696 VWVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 58 KVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 88 >gi|292619482|ref|XP_002663995.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Danio rerio] Length = 1224 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P V IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 246 RPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 305 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 306 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 334 >gi|195485854|ref|XP_002091261.1| GE13554 [Drosophila yakuba] gi|194177362|gb|EDW90973.1| GE13554 [Drosophila yakuba] Length = 1242 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 ++TD PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 277 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ++G+ Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGR 364 >gi|292619478|ref|XP_002663993.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Danio rerio] Length = 1210 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P V IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 246 RPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 305 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 306 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 334 >gi|118107064|ref|XP_423195.2| PREDICTED: similar to DHX8 protein [Gallus gallus] Length = 720 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 193 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 252 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 253 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 281 >gi|268531160|ref|XP_002630706.1| C. briggsae CBR-MOG-5 protein [Caenorhabditis briggsae] Length = 1205 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVW 671 +V EV KIY G+V + FGAF+ G R +GLVHISQ+ ERV +DV+K G V Sbjct: 235 EVAEVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVK 294 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696 VK+ ++ GK +MK VDQ TG+ Sbjct: 295 VKVNKIEN-GKTSFTMKEVDQQTGE 318 >gi|115628185|ref|XP_799263.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8, partial [Strongylocentrotus purpuratus] Length = 667 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673 PEV ++Y+G+V VM +G FV R +GLVHIS+L E RVA+ +DVV +G V VK Sbjct: 161 PEVGEVYEGKVTSVMQYGCFVQLSLRRRCEGLVHISELRKEGRVAEVTDVVSKGQQVKVK 220 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L KI+LSMK VDQN+G+ Sbjct: 221 VLSIAG-TKIRLSMKDVDQNSGE 242 >gi|309365279|emb|CAP24120.2| CBR-MOG-5 protein [Caenorhabditis briggsae AF16] Length = 1220 Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVW 671 +V EV KIY G+V + FGAF+ G R +GLVHISQ+ ERV +DV+K G V Sbjct: 235 EVAEVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVK 294 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696 VK+ ++ GK +MK VDQ TG+ Sbjct: 295 VKVNKIEN-GKTSFTMKEVDQQTGE 318 >gi|255717010|ref|XP_002554786.1| KLTH0F13772p [Lachancea thermotolerans] gi|238936169|emb|CAR24349.1| KLTH0F13772p [Lachancea thermotolerans] Length = 1114 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWV 672 P ++KIY G V K++ FG FV G +D GLVHIS+++ R+ S+VV G V+V Sbjct: 176 PAIDKIYPGVVRKLVGFGCFVRISGTKDPRCDGLVHISEMADRRINDPSEVVSLGQRVFV 235 Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695 K++ GKI L +K ++QNTG Sbjct: 236 KVIKVQKNGKISLRLKNINQNTG 258 >gi|118102879|ref|XP_418105.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Gallus gallus] Length = 1076 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 228 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 287 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 288 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 316 >gi|326202127|ref|ZP_08191997.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium papyrosolvens DSM 2782] gi|325987922|gb|EGD48748.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium papyrosolvens DSM 2782] Length = 672 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%) Query: 594 KIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 K+ S+ IE +E S I + E+ K YKGQV +MDFGAFV G DGLVH+S+L Sbjct: 449 KVVGSARILIEKNKEAASSVIWNSIEIGKTYKGQVKSLMDFGAFVDIGGV-DGLVHLSEL 507 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S ++ S+VVK GD + V +LDFD ++ +I L K Sbjct: 508 SWSKIKHPSEVVKVGDEIIVSVLDFDKEKKRISLGYK 544 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+VV+++ FGAFV DGLVHISQ+S+ R+ K D + G V K+++F Sbjct: 559 QVGNVATGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALTVGQQVEAKIIEF 618 Query: 678 D-DRGKIKLSMKVVD 691 D + KI LS+K V+ Sbjct: 619 DAETKKISLSIKEVN 633 >gi|327275335|ref|XP_003222429.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Anolis carolinensis] Length = 1186 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 223 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 282 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 283 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 311 >gi|327275337|ref|XP_003222430.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2 [Anolis carolinensis] Length = 1180 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 217 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 276 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ+TG+ Sbjct: 277 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 305 >gi|156551057|ref|XP_001606022.1| PREDICTED: similar to CG8241-PA [Nasonia vitripennis] Length = 1230 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 5/82 (6%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673 EV KIY G+V V+ FG FV G R +GLVHISQL E RV SDVV G+ V+VK Sbjct: 274 EVGKIYTGKVANVVPFGCFVQLDGLRKRSEGLVHISQLRREGRVVNASDVVTRGEKVFVK 333 Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695 +L+ + K+ LSMK VDQ +G Sbjct: 334 VLNITGQ-KVSLSMKDVDQESG 354 >gi|302306315|ref|NP_982561.2| AAR020Wp [Ashbya gossypii ATCC 10895] gi|299788458|gb|AAS50385.2| AAR020Wp [Ashbya gossypii ATCC 10895] Length = 1111 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672 P KIY+ + + FG F G + +GL+HISQLS RV +DVV GD V+V Sbjct: 179 TPIEGKIYRAVIRNIKPFGCFARVLGTKRSCEGLIHISQLSHSRVGSPNDVVSVGDHVYV 238 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+ D GK+ LSM+ VDQ TG+ Sbjct: 239 KITKVQDNGKLSLSMREVDQATGQ 262 >gi|170940268|emb|CAP65495.1| unnamed protein product [Podospora anserina S mat+] Length = 1151 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEG 667 R + D P++NK+Y G V V DFGAFV+ G + DGLVHIS +RV DVV G Sbjct: 199 RDLDDTPQLNKVYDGHVTGVKDFGAFVNIHGVKGKVDGLVHISAFG-QRVNHPEDVVTRG 257 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V VK++ + ++ LSMK +DQ TG Sbjct: 258 QNVKVKVVKIEG-NRVGLSMKDIDQETG 284 >gi|114555239|ref|XP_001158675.1| PREDICTED: similar to ZCCHC17 protein isoform 4 [Pan troglodytes] gi|114555241|ref|XP_001158730.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Pan troglodytes] gi|119628025|gb|EAX07620.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo sapiens] gi|119628027|gb|EAX07622.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo sapiens] gi|194379268|dbj|BAG63600.1| unnamed protein product [Homo sapiens] Length = 233 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 7/83 (8%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 E NK+Y V V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ Sbjct: 9 EKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 65 Query: 677 F---DDRGKIKLSMKVVDQNTGK 696 +DR K+ LSMKVV+Q TGK Sbjct: 66 REMKNDRIKVSLSMKVVNQGTGK 88 >gi|76636632|ref|XP_873064.1| PREDICTED: zinc finger, CCHC domain containing 17 [Bos taurus] gi|297483790|ref|XP_002693879.1| PREDICTED: zinc finger, CCHC domain containing 17-like [Bos taurus] gi|296479473|gb|DAA21588.1| zinc finger, CCHC domain containing 17-like [Bos taurus] Length = 237 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 4/89 (4%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670 ++ ++P + I++G+V V D+GAF+ G R GLVH + +S+ RV K S++V GD V Sbjct: 8 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67 Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696 VKL+ DDR K+ LSMKVVDQ T K Sbjct: 68 CVKLIGREMKDDRIKVSLSMKVVDQGTVK 96 >gi|301119357|ref|XP_002907406.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4] gi|262105918|gb|EEY63970.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4] Length = 1158 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCG----ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 E+ IY G+V KVMDFG FV G ++GLVH+S LS RV+ + K GD V VK Sbjct: 199 ELYGIYDGRVAKVMDFGVFVELEGFSREKKEGLVHVSNLSANRVSNVKEFAKRGDRVKVK 258 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 L+ K+ +SM+ VDQ TGK ++ Sbjct: 259 LISISG-AKLSMSMRDVDQRTGKDLM 283 >gi|2275200|gb|AAB63822.1| putative polyribonucleotide phosphorylase [Arabidopsis thaliana] Length = 171 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 51/84 (60%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL V+YQE Sbjct: 21 SVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQE 80 Query: 66 RTYAVGKIPGGYLRRESRPTENEI 89 R AVG+ GG+ +RE R ++E+ Sbjct: 81 RFSAVGRTSGGFFKREGRTKDHEV 104 >gi|194883184|ref|XP_001975683.1| GG20423 [Drosophila erecta] gi|190658870|gb|EDV56083.1| GG20423 [Drosophila erecta] Length = 1240 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 +++D PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 275 AMSDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 334 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ++GK Sbjct: 335 QTVKVKVMTITGQ-KVSLSMKEVDQDSGK 362 >gi|47216140|emb|CAG10014.1| unnamed protein product [Tetraodon nigroviridis] Length = 241 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA 658 +++ + R + +P + I KG+VV V +GAFV G ++GLVH+S++S RV Sbjct: 1 MSDSDGQRPEPAGLEGLPPMYSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVE 60 Query: 659 KTSDVVKEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGK 696 S++V G+ VW+K++ + RG K+ SMK V+Q TG+ Sbjct: 61 NASEIVDVGEQVWIKVIGREIRGDKVKLSFSMKAVNQGTGR 101 >gi|307110751|gb|EFN58986.1| hypothetical protein CHLNCDRAFT_137613 [Chlorella variabilis] Length = 1006 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGD 668 + D PE+ +Y+G+V VMDFG FV G R +GLVH+S + ST+R D+V +GD Sbjct: 212 LPDEPEMYGVYRGRVTGVMDFGCFVELQGFRTKQEGLVHLSNISSTKRAGSAKDMVGKGD 271 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VWVK++ + ++ L+M+ VDQ TG+ ++ Sbjct: 272 PVWVKIVSKTGQ-RLGLAMRDVDQVTGEDLL 301 >gi|332254546|ref|XP_003276390.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Nomascus leucogenys] Length = 232 Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 7/83 (8%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 E NK+Y V V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ Sbjct: 9 EKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 65 Query: 677 F---DDRGKIKLSMKVVDQNTGK 696 +DR K+ LSMKVV+Q TGK Sbjct: 66 REMKNDRIKVSLSMKVVNQGTGK 88 >gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] Length = 236 Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 15/226 (6%) Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 ++K+R DGR + +R I + G+L+R GS+ G + I+ G RE Y+ L Sbjct: 8 NEKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNK-ILASVYGPRE--SYIRRLLK 64 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS- 427 + YN P + + R G P RR ++A A+ P L FP ++ VS Sbjct: 65 PNTGVIRVRYNMAPFSVDDRKRPG-PDRRSTEISKIAADALRPAL-MLESFPRSMVDVSI 122 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ E++G + A + +++AL DAG+P+ V G A G V D I+ D+S ED G Sbjct: 123 EVIEAEGGTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDE----IVLDLSEKEDKEG 178 Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 D +A IT +Q D G ++E AL A G + I Sbjct: 179 QADVPIAIMPRTGEITLLQAD---GNLTEEEFEEALDLAIEGCMKI 221 >gi|74209213|dbj|BAE24985.1| unnamed protein product [Mus musculus] Length = 1244 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG+FV G R +GLVHIS+L E RVA +DVV + Sbjct: 280 RPPPEEPAIGDIYNGKVTSIMQFGSFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 339 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 340 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 368 >gi|299116904|emb|CBN75014.1| conserved unknown protein [Ectocarpus siliculosus] Length = 643 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 6/87 (6%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +PEV ++KG+VVK FGAF+ G R GLVH SQ+++ RV +DV K GDTV+ K+ Sbjct: 234 LPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKV 293 Query: 675 LDFDDRG-----KIKLSMKVVDQNTGK 696 ++ D +I LSMK+V+Q GK Sbjct: 294 IEVTDGADPREQRIALSMKLVNQADGK 320 >gi|212638920|ref|YP_002315440.1| 30S ribosomal protein S1 [Anoxybacillus flavithermus WK1] gi|212560400|gb|ACJ33455.1| Ribosomal protein S1 [Anoxybacillus flavithermus WK1] Length = 386 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V ++ +G VV++ +FGAFV+ G DGLVHISQLS RV SDVVKEGD V VK+L Sbjct: 193 QVGQVLEGTVVRMTNFGAFVNI-GEVDGLVHISQLSHARVDHPSDVVKEGDVVKVKVLAI 251 Query: 678 DDR-GKIKLSMK 688 D+ G++ LSMK Sbjct: 252 DEESGRVSLSMK 263 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ FGAFV +GLVHISQ+ST+ + +V+KEGD V VK+L +++ Sbjct: 282 VLEGTVKRLAPFGAFVEVFPGVEGLVHISQISTKHIGAPHEVLKEGDVVKVKVLAVNEQE 341 Query: 682 KIKLSMKV 689 K +LS+ + Sbjct: 342 K-RLSLSI 348 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKT 660 E+ EM + V EV KGQV KV D + G++ G++ IS+LS+ + K Sbjct: 5 EVFTMEEMNQVDVRVYEVGDTVKGQVTKVEDKQVLIDVEGSKLVGIIPISELSSLHIEKA 64 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 SDV+ GD V K+ +D I LS K D Sbjct: 65 SDVLSVGDAVVAKVKKVEDEALI-LSKKAAD 94 >gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 21/200 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R +GR + +R + G+++ HGS L GDT+ + T+ +E G + Sbjct: 8 RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATI----EEGVPGWRKGAKAG 63 Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 Y LP +TG+ + +R R + RL R++ V+ A YT+ + ++ Sbjct: 64 WVTAEYAMLPASTGKRCKREYANRKGRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVI 123 Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479 ++DG + A++ G+ +AL DA +P++ VA I+MG+V DG+ + D+ Sbjct: 124 QADGGTRTASITGAWVALHDALAMWVEAGKIERIPLTGQVAAISMGVV-DGNTML---DL 179 Query: 480 SGDEDHLGHMDFKVAGTDSG 499 ED +D + TD+G Sbjct: 180 DYSEDSHAEVDMNLVATDTG 199 >gi|114666961|ref|XP_001153951.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 1 [Pan troglodytes] Length = 1007 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|42570002|ref|NP_182244.2| 3' exoribonuclease family domain 1 protein-related [Arabidopsis thaliana] gi|330255721|gb|AEC10815.1| uncharacterized protein [Arabidopsis thaliana] Length = 469 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 51/84 (60%) Query: 6 TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65 +V+I + R + +ETG + RQ+ AV T GET+V +V + DF PL V+YQE Sbjct: 21 SVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQE 80 Query: 66 RTYAVGKIPGGYLRRESRPTENEI 89 R AVG+ GG+ +RE R ++E+ Sbjct: 81 RFSAVGRTSGGFFKREGRTKDHEV 104 >gi|296201537|ref|XP_002748076.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Callithrix jacchus] Length = 1216 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 252 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340 >gi|119572063|gb|EAW51678.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_c [Homo sapiens] Length = 1007 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|193657113|ref|XP_001946838.1| PREDICTED: nucleolar protein of 40 kDa-like [Acyrthosiphon pisum] Length = 227 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 +N I+ G+V V ++GAF+ G + GLVH +QLS V +DV+ +GD +W K++ Sbjct: 4 NINDIFIGEVSSVQNYGAFIRIPGNKQQGLVHRTQLSRVPVDDATDVLSKGDKIWAKVIG 63 Query: 677 FDDRGKIKLSMKVVDQNTGK 696 DD GKI LSMK+VDQ +G+ Sbjct: 64 MDD-GKISLSMKLVDQGSGR 82 >gi|149054338|gb|EDM06155.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Rattus norvegicus] Length = 1242 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 278 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 337 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 338 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 366 >gi|119572061|gb|EAW51676.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_a [Homo sapiens] Length = 952 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|60360134|dbj|BAD90286.1| mKIAA4096 protein [Mus musculus] Length = 1264 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 300 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 359 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 360 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 388 >gi|308801349|ref|XP_003077988.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus tauri] gi|116056439|emb|CAL52728.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus tauri] Length = 126 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Query: 609 MIRSITDVPEVNKIYKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 M+ ++T EV KIY+ QV K+++FG FV F +GLVHIS+L RV SDV EG Sbjct: 1 MVAALTVEAEVGKIYRNCQVKKIVEFGCFVEFLPGMEGLVHISELDVSRVPNVSDVTAEG 60 Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690 + VK+++ ++RG+ +LS K V Sbjct: 61 ALLDVKVIEINNRGQTRLSRKEV 83 >gi|296201539|ref|XP_002748077.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2 [Callithrix jacchus] Length = 1177 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 252 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340 >gi|114666953|ref|XP_001154075.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Pan troglodytes] Length = 1181 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|301768709|ref|XP_002919800.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Ailuropoda melanoleuca] Length = 1253 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 289 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 348 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 349 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 377 >gi|56699440|ref|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus] gi|187471036|sp|A2A4P0|DHX8_MOUSE RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH box protein 8 gi|123236581|emb|CAM22647.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] gi|123239591|emb|CAM24250.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] gi|124376748|gb|AAI32446.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] gi|148702118|gb|EDL34065.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] Length = 1244 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 280 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 339 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 340 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 368 >gi|221044526|dbj|BAH13940.1| unnamed protein product [Homo sapiens] Length = 1181 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|127801176|gb|AAH44586.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens] Length = 1220 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|127797813|gb|AAH47327.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens] Length = 1220 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|194376504|dbj|BAG57398.1| unnamed protein product [Homo sapiens] Length = 854 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 165 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 224 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 225 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 253 >gi|114666959|ref|XP_001154016.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 2 [Pan troglodytes] Length = 1129 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 165 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 224 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 225 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 253 >gi|197102406|ref|NP_001126950.1| ATP-dependent RNA helicase DHX8 [Pongo abelii] gi|55733262|emb|CAH93314.1| hypothetical protein [Pongo abelii] Length = 1127 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 163 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 222 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 223 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 251 >gi|4826690|ref|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens] gi|114666955|ref|XP_001154202.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 5 [Pan troglodytes] gi|3023637|sp|Q14562|DHX8_HUMAN RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH box protein 8; AltName: Full=RNA helicase HRH1 gi|807817|dbj|BAA09078.1| RNA helicase [Homo sapiens] gi|119572062|gb|EAW51677.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_b [Homo sapiens] gi|168275648|dbj|BAG10544.1| ATP-dependent RNA helicase DHX8 [synthetic construct] Length = 1220 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 705 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G+VV+ ++FGAF+ +GL HISQLS + VAKT DVV EGD V VK+L DD + Sbjct: 587 IVQGKVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQ 646 Query: 681 GKIKLSMK 688 K+ LS+K Sbjct: 647 KKVSLSIK 654 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V ++ DFGAF+ G DGL HISQ+S R+ ++ G+ V VK+L D + Sbjct: 502 IVDGTVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPEN 560 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 561 ERISLSIK 568 >gi|158256760|dbj|BAF84353.1| unnamed protein product [Homo sapiens] Length = 1220 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|119572065|gb|EAW51680.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_e [Homo sapiens] Length = 1169 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|281354218|gb|EFB29802.1| hypothetical protein PANDA_008429 [Ailuropoda melanoleuca] Length = 1219 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 255 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 314 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 315 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 343 >gi|194216852|ref|XP_001491740.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 2 [Equus caballus] Length = 1226 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 262 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 321 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 322 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 350 >gi|329663394|ref|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus] gi|297487152|ref|XP_002696080.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus] gi|296476265|gb|DAA18380.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus] Length = 1218 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 254 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 313 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 314 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 342 >gi|123236580|emb|CAM22646.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] gi|123239590|emb|CAM24249.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] Length = 1175 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 227 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 286 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 287 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 315 >gi|311267143|ref|XP_003131427.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Sus scrofa] Length = 1158 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 248 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 307 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 308 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 336 >gi|114145427|ref|NP_001041309.1| ATP-dependent RNA helicase DHX8 [Rattus norvegicus] gi|37654286|gb|AAQ96248.1| LRRGT00035 [Rattus norvegicus] Length = 1210 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 225 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 284 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 285 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 313 >gi|73965615|ref|XP_537627.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 1 [Canis familiaris] Length = 1216 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 252 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340 >gi|229543987|ref|ZP_04433046.1| RNA binding S1 domain protein [Bacillus coagulans 36D1] gi|229325126|gb|EEN90802.1| RNA binding S1 domain protein [Bacillus coagulans 36D1] Length = 378 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 V +D+D ++ S A +E +E R I D E ++ +G V ++ FGAFV G Sbjct: 153 VELDEDKN-RLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTVQRLTSFGAFVDIGGI- 210 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 DGLVHISQL+ ERV SDVV+EG+ V VK+L D D G+I LS+K Sbjct: 211 DGLVHISQLAHERVETPSDVVQEGEQVKVKVLSVDRDNGRISLSIK 256 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G V +++ FGAFV +GLVHISQ+S + V+ +V++EG V VK+LD +++ Sbjct: 275 VLTGTVKRLVSFGAFVEVFPGVEGLVHISQISHKHVSTPHEVLREGQEVQVKVLDVNEQA 334 Query: 682 -KIKLSMKVVDQ 692 ++ LSMK ++Q Sbjct: 335 HRLSLSMKELEQ 346 >gi|73965613|ref|XP_857363.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 3 [Canis familiaris] Length = 1163 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 199 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 258 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 259 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 287 >gi|114666957|ref|XP_001154148.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 4 [Pan troglodytes] Length = 1142 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ TG+ Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344 >gi|325115120|emb|CBZ50676.1| putative S1 RNA-binding domain containing protein [Neospora caninum Liverpool] Length = 390 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 584 KVNIDDDGTVKIASSSLAEIEAA-REMIRSI---------TDVPEVNKIYKGQVVKVMDF 633 KV +DG +++ S+ + + RE +R PE++ I++G V ++ DF Sbjct: 101 KVLSQEDGKLRLCMKSVNQHDGTERESLRQTFSHRGEGGGIKTPELDSIHQGTVRRIQDF 160 Query: 634 GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 GAFV G RDGL+HIS +S++++ + DV+ GD VWVK+ + GK L M+ + Q Sbjct: 161 GAFVSIDGFDRDGLLHISCISSQKLDRVDDVLAVGDKVWVKVTKVEAGGKYGLDMRGISQ 220 Query: 693 NTG 695 G Sbjct: 221 KDG 223 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 ++GL+HIS++S +RV DV+ G +WVK+L +D GK++L MK V+Q+ G Sbjct: 71 KEGLLHISRISDQRVENVEDVLAVGQEIWVKVLSQED-GKLRLCMKSVNQHDG 122 >gi|195380363|ref|XP_002048940.1| GJ21042 [Drosophila virilis] gi|194143737|gb|EDW60133.1| GJ21042 [Drosophila virilis] Length = 1267 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 ++D PE+ KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 301 MSDDPELGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 360 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ +G+ Sbjct: 361 TVKVKVMSLTGQ-KVSLSMKEVDQESGR 387 >gi|156551017|ref|XP_001600416.1| PREDICTED: similar to putative S1 RNA binding domain protein [Nasonia vitripennis] Length = 260 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 +VN+I+ G++ V ++GAFV G + GLVH SQ+S+ V +V++ G+ +W K++ Sbjct: 5 QVNQIFLGEISSVQNYGAFVKIPGCPQQGLVHRSQVSSAHVDDVGEVLQRGERIWCKVIS 64 Query: 677 FDDRGKIKLSMKVVDQNTGK 696 + GKI LSMK+V+Q GK Sbjct: 65 IGEDGKIALSMKLVNQGNGK 84 >gi|327286703|ref|XP_003228069.1| PREDICTED: nucleolar protein of 40 kDa-like [Anolis carolinensis] Length = 232 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 4/84 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 PE+ I++G+V V D+GAF+ G ++ GLVH S +S RV S++V G+ VWVKL+ Sbjct: 5 PELYDIFQGEVASVTDYGAFIKIPGTSKQGLVHKSHMSHCRVDIPSELVDVGEKVWVKLI 64 Query: 676 ---DFDDRGKIKLSMKVVDQNTGK 696 D++ K LSMKVV+Q TGK Sbjct: 65 GKEKTDNKLKFSLSMKVVNQGTGK 88 >gi|170050956|ref|XP_001861545.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus] gi|167872422|gb|EDS35805.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus] Length = 1253 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTE-RVAKTSDVVKE 666 R + + PE +IY G+VV ++ FG FV F ++GLVHISQLS+E RV +DVV Sbjct: 272 RQMPEEPEPGQIYNGRVVNIVAFGCFVQLTDFRRKKEGLVHISQLSSEGRVNTVTDVVNR 331 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 D V VK++ KI L MK VDQ +GK Sbjct: 332 NDNVKVKVISIAG-SKISLCMKDVDQESGK 360 >gi|194754421|ref|XP_001959493.1| GF12026 [Drosophila ananassae] gi|190620791|gb|EDV36315.1| GF12026 [Drosophila ananassae] Length = 1251 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 5/89 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667 ++TD PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 286 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVSRN 345 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ + K+ LSMK VDQ +G+ Sbjct: 346 QAVKVKVMSITGQ-KVSLSMKEVDQESGR 373 >gi|115677377|ref|XP_001203156.1| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus purpuratus] gi|115712946|ref|XP_787656.2| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus purpuratus] Length = 232 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 4/86 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKL 674 P + IYKG+V + +GAFV G ++GLVH SQ+S T+RV S+V+ GD VW K+ Sbjct: 5 PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKV 64 Query: 675 LDF--DDRGKIKLSMKVVDQNTGKPI 698 + D+ KI LSMKVV+Q+ G+ + Sbjct: 65 ISLGEDEEMKISLSMKVVNQDNGQDL 90 >gi|159164517|pdb|2EQS|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human Atp-Dependent Rna Helicase Dhx8 Length = 103 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV +G V V Sbjct: 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKV 69 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698 K+L F K LSMK VDQ TG+ + Sbjct: 70 KVLSFTGT-KTSLSMKDVDQETGEDL 94 >gi|323456777|gb|EGB12643.1| hypothetical protein AURANDRAFT_18668 [Aureococcus anophagefferens] Length = 269 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 46/75 (61%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 +++G V ++ FG FV G DGL H+SQ+ RV DVV G+ V VK+++ D G Sbjct: 40 VHRGTVARIQPFGCFVRIEGFGDGLCHVSQMCAYRVEDPKDVVDVGEAVRVKVVEHKDAG 99 Query: 682 KIKLSMKVVDQNTGK 696 K LSMK VDQ TG+ Sbjct: 100 KYSLSMKAVDQATGE 114 >gi|229828596|ref|ZP_04454665.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM 14600] gi|229793190|gb|EEP29304.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM 14600] Length = 294 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + S+ E E R ++ D EV I +G V ++ DFGAFV+ DGLVHISQ+S Sbjct: 157 VLSARAVEQEKKRLEQQAKLDALEVGSIVEGTVARLKDFGAFVNIADGLDGLVHISQISL 216 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 +RV K D ++ G V VK+ D GK+ LSMK V+ Sbjct: 217 KRVEKVEDALRVGQKVRVKITGMKD-GKVSLSMKAVE 252 >gi|281357105|ref|ZP_06243595.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548] gi|281316663|gb|EFB00687.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548] Length = 607 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 SL +A + +I D+ +V + KG+V K+ FGAFV DGL+HISQLS +RV Sbjct: 471 SLGLKQAETDPWANINDLYKVGDVVKGKVTKIAAFGAFVELTNKIDGLIHISQLSRDRVE 530 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 K DV+ GD V +++ D D +I LS+K V +N Sbjct: 531 KVKDVLNVGDEVEARVIKVDTDERRIGLSIKAVGEN 566 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671 ++ P+ +KI G+VV +M +GAFV +GL+H+S++S T+RV+K SDV+ G+ V Sbjct: 312 VSKYPKGSKI-NGKVVNIMPYGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVE 370 Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693 +LD D D KI L ++ ++N Sbjct: 371 AVVLDIDRDSRKISLGLRQKERN 393 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 5/81 (6%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V+++ KG V + DFGAF+ G DGL+HI+ +S R++ S+V+K G+ + V ++ Sbjct: 231 KVDELRKGVVKNITDFGAFIDLGGV-DGLLHITDISWGRISHPSEVLKVGEEIEVVIIGI 289 Query: 678 D-DRGKIKLSMKVVDQNTGKP 697 D ++ ++ L +K Q T P Sbjct: 290 DKEKERVSLGLK---QKTRNP 307 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + +GAFV DG++H+S +S T ++ ++V+K G V +LD + ++ + Sbjct: 410 GKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKINNPNEVLKPGQEVEAIILDINPEQQR 469 Query: 683 IKLSMK 688 I L +K Sbjct: 470 ISLGLK 475 >gi|195149686|ref|XP_002015787.1| GL11247 [Drosophila persimilis] gi|194109634|gb|EDW31677.1| GL11247 [Drosophila persimilis] Length = 1152 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 + D PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 188 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 247 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ +G+ Sbjct: 248 TVRVKVMSLTGQ-KVSLSMKEVDQESGR 274 >gi|125807271|ref|XP_001360333.1| GA20923 [Drosophila pseudoobscura pseudoobscura] gi|54635505|gb|EAL24908.1| GA20923 [Drosophila pseudoobscura pseudoobscura] Length = 1254 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 + D PE KIY G+V ++ FG FV G R +GLVHISQL E RV ++VV Sbjct: 290 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 349 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 TV VK++ + K+ LSMK VDQ +G+ Sbjct: 350 TVRVKVMSLTGQ-KVSLSMKEVDQESGR 376 >gi|189205919|ref|XP_001939294.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975387|gb|EDU42013.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1214 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKT 660 E R + D P + KIY G+V + DFG FV+ G + DGLVH++Q+ RV Sbjct: 233 EFRRPPTPELDDEPVLYKIYNGKVTGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHP 292 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SD+V V VK++ ++ G+I LSMK VDQ TG+ Sbjct: 293 SDLVSRWQEVKVKVIKTEN-GRISLSMKEVDQQTGR 327 >gi|256083123|ref|XP_002577799.1| ATP-dependent RNA Helicase [Schistosoma mansoni] gi|238663131|emb|CAZ34037.1| ATP-dependent RNA Helicase, putative [Schistosoma mansoni] Length = 1569 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 5/90 (5%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVK 665 ++ + P V IY+G+V V+ FGA V G R +GLVHISQL E RVA DVV Sbjct: 570 LKDLPSEPVVGDIYRGRVTNVLAFGAVVQLDGLRKRWEGLVHISQLRQEGRVASVGDVVN 629 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 VWVK++ F + LSM+ VDQ TG Sbjct: 630 RNQKVWVKVISFTG-TRTGLSMREVDQETG 658 >gi|164658227|ref|XP_001730239.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966] gi|159104134|gb|EDP43025.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966] Length = 1152 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 12/94 (12%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--------STERVAKTSDVVK 665 P +NK+Y G+V V DFGAFV G RDGLVHIS L +T R++ SDVV Sbjct: 165 PVLNKVYYGRVSGVKDFGAFVTLDGVAGRRDGLVHISALCSNTARGGNTGRISHPSDVVS 224 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 GD V VK++ + +I LSM+ VDQ TG+ +V Sbjct: 225 RGDHVKVKVISIAGQ-RIGLSMRDVDQVTGRDLV 257 >gi|148225756|ref|NP_001085888.1| MGC80994 protein [Xenopus laevis] gi|49118496|gb|AAH73477.1| MGC80994 protein [Xenopus laevis] Length = 793 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 212 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 271 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V +K+L F K LSMK V+Q+TG+ Sbjct: 272 GQRVKIKVLSFTG-CKTSLSMKDVNQDTGE 300 >gi|297273171|ref|XP_002800602.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Macaca mulatta] Length = 1198 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 258 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 317 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK VDQ +G+ Sbjct: 318 GQRVKVKVLSFTG-TKTSLSMKDVDQESGE 346 >gi|209731456|gb|ACI66597.1| Nucleolar protein of 40 kDa [Salmo salar] Length = 129 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVA 658 +A+ + ++ + +P + I KG+V V +GAF+ G R GLVHIS+LS RV Sbjct: 1 MADFDHDQQEPAGLDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVE 60 Query: 659 KTSDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696 ++VV G+ VW+K++ DD+ K+ SMK V+Q TGK Sbjct: 61 NVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGK 101 >gi|260824746|ref|XP_002607328.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae] gi|229292675|gb|EEN63338.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae] Length = 226 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 ++P +N I++G+VV + +G F+ G R +GLVH SQ+S RV +VV GD V+ K Sbjct: 18 NLPAMNSIFQGEVVSLQPYGCFIKIPGCRKNGLVHKSQMSASRVEDPKEVVDMGDRVYCK 77 Query: 674 LLDFDD--RGKIKLSMKVVDQNTG 695 ++ + GKI LSMKVV+Q G Sbjct: 78 VISLGEGGNGKISLSMKVVNQGDG 101 >gi|301605879|ref|XP_002932570.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Xenopus (Silurana) tropicalis] Length = 1150 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 217 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 276 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK V+Q+TG+ Sbjct: 277 GQRVKVKVLSFTG-CKTSLSMKDVNQDTGE 305 >gi|313680954|ref|YP_004058693.1| RNA binding s1 domain protein [Oceanithermus profundus DSM 14977] gi|313153669|gb|ADR37520.1| RNA binding S1 domain protein [Oceanithermus profundus DSM 14977] Length = 126 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G+V +VMDFGAFV G GLVHIS+++ E V D + EGD V V +L Sbjct: 4 EAGSIVEGRVTRVMDFGAFVELPGGESGLVHISEIAHEFVKNVRDFLNEGDIVEVFVLGR 63 Query: 678 DDRGKIKLSMK 688 DD+G++ LS+K Sbjct: 64 DDKGRLDLSIK 74 >gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa] Length = 241 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 20/241 (8%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R + AQ+G + + GS++F G+T+ I V G RE + Q Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAV-YGPREVQN-----RSQQI 62 Query: 372 NDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 ND + Y+ +TG+ R RR + R+A+ + + I + Sbjct: 63 NDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQ 122 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTP----LLDLNYVEDSAGG 178 Query: 489 MDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 D V +T +QMD K+ EN+M +A++ K I N + +VL E+ Q Sbjct: 179 PDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCK----AIANYIREVLLENTKQ 234 Query: 546 L 546 L Sbjct: 235 L 235 >gi|163915380|gb|AAI57174.1| Unknown (protein for IMAGE:7559583) [Xenopus (Silurana) tropicalis] Length = 346 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 75 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 134 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G V VK+L F K LSMK V+Q+TG+ Sbjct: 135 GQRVKVKVLSFTG-CKTSLSMKDVNQDTGE 163 >gi|39949754|ref|XP_363223.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15] gi|145009363|gb|EDJ94074.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15] Length = 1207 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + K+Y G V V DFGAFV+ G + DGLVH+S L+ +RV+ SD V +G Sbjct: 227 LDDTPVLQKVYDGHVTGVKDFGAFVNLHGVKGKVDGLVHVSALTDGQRVSHPSDFVDKGQ 286 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ + +I LSMK VDQ TG+ Sbjct: 287 PVKVKVIKIEG-SRIGLSMKEVDQQTGE 313 >gi|229918700|ref|YP_002887346.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] Length = 382 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++ +G V ++ DFGAFV G DGLVHIS+++ RV K SDVV EGD V VK+L Sbjct: 185 EVGQVIEGTVQRLTDFGAFVDIGGV-DGLVHISEMAHSRVEKPSDVVTEGDRVKVKVLGL 243 Query: 678 D-DRGKIKLSMK 688 D D K+KLS+K Sbjct: 244 DLDNEKVKLSIK 255 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD--FDD 679 + +G V +++ FGAFV +GL+HISQ++ +A S+V+ EG V VK+LD DD Sbjct: 274 VIEGTVKRLVTFGAFVEVAPQVEGLLHISQIANRHIATPSEVLSEGQEVKVKVLDVHLDD 333 Query: 680 RGKIKLSMKVVDQN 693 + KI LSM+ ++ + Sbjct: 334 K-KISLSMRALESS 346 >gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola sp. JR] gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens JR] Length = 674 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G+VV++ FGAFV DGLVHISQL+ RVA S+VV GD V K+++ D Sbjct: 555 VGSIVEGKVVRLAPFGAFVELEPGVDGLVHISQLANRRVANCSEVVSAGDMVKAKVIEVD 614 Query: 679 -DRGKIKLSMKVVDQNT 694 ++ +I LSMK V++N Sbjct: 615 AEKKRISLSMKEVEENN 631 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D V ++ ++ E EA + ++ ++ + ++ KG V ++ DFGAFV G DGL+H Sbjct: 441 DARKVVLSRKAILEEEAQAKKAETLRNL-QSGQVVKGTVKRLTDFGAFVDI-GGIDGLLH 498 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +S+++ RV S+VVKEGD + V +LD D + K+ LS+K V N Sbjct: 499 VSEMAWYRVGHPSEVVKEGDQIEVFILDVDKNTEKVSLSLKKVLPN 544 >gi|196475694|gb|ACG76403.1| transcription factor-like 1 (predicted) [Otolemur garnettii] Length = 480 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 4/75 (5%) Query: 626 QVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRG 681 +V V D+GAFV G R GLVH + +S+ RV K S++V GD VWVKL+ +DR Sbjct: 130 EVAVVTDYGAFVKIPGCRKQGLVHQTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRI 189 Query: 682 KIKLSMKVVDQNTGK 696 K+ LSMKVV+Q TGK Sbjct: 190 KVFLSMKVVNQGTGK 204 >gi|85108466|ref|XP_962580.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A] gi|28924189|gb|EAA33344.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A] Length = 1179 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 5/92 (5%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDV 663 R R + D P + K+Y+G V + DFGAFV+ G + DGLVH+S +RV SD+ Sbjct: 195 RPPPREVDDSPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLVHVSAFG-QRVNHPSDL 253 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + +G V VK++ + G++ LSMK VDQ TG Sbjct: 254 LSKGQEVKVKVIKLEG-GRVGLSMKDVDQETG 284 >gi|289619705|emb|CBI53988.1| unnamed protein product [Sordaria macrospora] Length = 1182 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 5/92 (5%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDV 663 R +R + P + K+Y+G V + DFGAFV+ G + DGLVHIS +RV SD+ Sbjct: 197 RPPVRETDEAPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLVHISAFG-QRVNHPSDL 255 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 + +G V VK++ + G++ LSMK VDQ TG Sbjct: 256 LSKGQEVKVKVVKLEG-GRVGLSMKDVDQETG 286 >gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1] Length = 240 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 9/189 (4%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 +M + +R+DGR +R I Q G+++R GS+ G + IV V + E Y Sbjct: 7 LMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYV----REAYPKH 62 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 R YN + E R G P RR + ++ A+ + + + Sbjct: 63 AQNIDRAIVKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAEIDV 121 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 ++ E+D + +A++ SS+A+ DAGVP+ V G G D I+L D+S DED+ Sbjct: 122 FIQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAG---KADGKIVL-DLSKDEDN 177 Query: 486 LGHMDFKVA 494 G D +A Sbjct: 178 FGQADIPMA 186 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 17/193 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQ--DFFPLTVNYQERTYAV 70 RP+K++TG + R +DG+ +G +++A V + K Q D + Y Y+V Sbjct: 24 RPIKIQTGVVER-ADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVKARYNMSGYSV 82 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128 + R+ P + IS+++ ++ + K + E V I V++ D + + Sbjct: 83 EE------RKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLEAD--AGTRI 134 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185 S+ A+S A+ +G+P VVG +G+ VL+ DED Q + + + V Sbjct: 135 ASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMAILPRTGKV 194 Query: 186 LMVELEANQLSED 198 ++++L+ + E+ Sbjct: 195 VLLQLDGDVTEEE 207 >gi|158286052|ref|XP_308573.4| AGAP007212-PA [Anopheles gambiae str. PEST] gi|157020283|gb|EAA04624.5| AGAP007212-PA [Anopheles gambiae str. PEST] Length = 1288 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 5/79 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677 IY G+VV ++ FG FV G R +GLVHISQLSTE RV +DVV GD V VK++ Sbjct: 330 IYDGRVVNIVAFGCFVQLNGFRRKKEGLVHISQLSTEGRVNLVTDVVNRGDEVKVKVMSL 389 Query: 678 DDRGKIKLSMKVVDQNTGK 696 KI LSMK V+Q++G+ Sbjct: 390 AG-NKISLSMKEVEQSSGR 407 >gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa] Length = 392 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 2/103 (1%) Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646 ID D I S EAA+ + + E+ + G V ++ DFGAFV GA DGL Sbjct: 154 IDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIVRRLTDFGAFVD-VGAVDGL 212 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 VHISQ+S +RV SDV+ GD V K+L FD + G+I LS++ Sbjct: 213 VHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIR 255 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 N I KG V +++ FGAFV +GL+HIS++S + S+++KEG + VK+L+ D Sbjct: 272 NDIVKGVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDS 331 Query: 680 RG-KIKLSMKVVDQNTGK 696 ++ L+M V+QNT + Sbjct: 332 NARRVSLTMCDVEQNTSQ 349 >gi|67537102|ref|XP_662325.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4] gi|40741573|gb|EAA60763.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4] gi|259482440|tpe|CBF76926.1| TPA: hypothetical protein similar to ATP dependent helicase (Broad) [Aspergillus nidulans FGSC A4] Length = 1241 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V V DFGAFV+ G R DGLVH+S + RV SD+V G Sbjct: 267 LDDSPVLYKIYDGRVTGVKDFGAFVNLVGVRGKVDGLVHVSAMQEGTRVNHPSDLVSRGQ 326 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ +V Sbjct: 327 PVKVKVISIQG-SRIGLSMKEVDQETGQDLV 356 >gi|110833125|ref|YP_691984.1| S1 RNA-binding domain-containing protein [Alcanivorax borkumensis SK2] gi|110646236|emb|CAL15712.1| S1 RNA binding domain protein [Alcanivorax borkumensis SK2] Length = 790 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 4/99 (4%) Query: 602 EIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E +AA +E + ++ D+ + N I +G V V +FGAFV +DGLVH+S L+ + V Sbjct: 631 EFKAAVLKEGVETLKDLKQ-NMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVED 689 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 VV GD V VK+LD D DR +I L+M++ DQ T KP Sbjct: 690 PHQVVAPGDIVKVKVLDVDLDRKRISLTMRMGDQPTEKP 728 >gi|237843989|ref|XP_002371292.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49] gi|211968956|gb|EEB04152.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49] gi|221483751|gb|EEE22063.1| 40S ribosomal protein S1, putative [Toxoplasma gondii GT1] gi|221504239|gb|EEE29914.1| 40S ribosomal protein S1, putative [Toxoplasma gondii VEG] Length = 378 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 11/123 (8%) Query: 584 KVNIDDDGTVKIASSSLAEIEAA-REMIRSI---------TDVPEVNKIYKGQVVKVMDF 633 KV +DG +++ S+ + + + RE +R PE++ I++G V ++ +F Sbjct: 86 KVLSQEDGKLRLCMKSVNQHDGSERESLRQSFIHRGEGGGVKTPELDSIHQGTVRRIQEF 145 Query: 634 GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 GAFV G RDGL+HIS +S++++ + D + GD VWVK+ ++ GK L M+ + Q Sbjct: 146 GAFVSIDGFDRDGLLHISCISSQKLDRVDDALAVGDKVWVKVTKVEEGGKYGLDMRGISQ 205 Query: 693 NTG 695 G Sbjct: 206 KDG 208 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 P+ I+KG V K+ +GAFV ++GL+HIS++S +RV DV+ G VWVK+L Sbjct: 29 PQSTDIHKGVVKKLQSYGAFVKVPDLDKEGLLHISRISDQRVENVEDVLAVGQEVWVKVL 88 Query: 676 DFDDRGKIKLSMKVVDQNTG 695 +D GK++L MK V+Q+ G Sbjct: 89 SQED-GKLRLCMKSVNQHDG 107 >gi|295398966|ref|ZP_06808948.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978432|gb|EFG54028.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 387 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G V ++ DFG FV G DGLVHISQLS RVA SDVV+EG+TV VK+L Sbjct: 191 ETGQVLEGIVRRITDFGVFVD-VGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSV 249 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 250 DEENGRVSLSIK 261 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G+V +++ FGAFV +GLVHISQ+ST+R+ +V+KEG+ V K+LD + Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAE 339 Query: 681 GKIKLSMK 688 +I LS++ Sbjct: 340 RRISLSIR 347 Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +V +V I +G+V K+ D V G++ G++ IS+LS+ + KTSD V GD V K Sbjct: 10 NVYKVGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAK 69 Query: 674 LL-----DFDDRGKIKLSMKVVD 691 + + ++ G + LS K VD Sbjct: 70 VKKVEEGENEEDGLLILSKKAVD 92 >gi|291228613|ref|XP_002734274.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8-like [Saccoglossus kowalevskii] Length = 1199 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 PE+ +Y G++ +M FG FV G R DGLVHISQL E RV+ ++VV +G V V Sbjct: 240 PEIGHVYDGKIASIMKFGCFVQLEGLRKRCDGLVHISQLRREGRVSDVNEVVHKGQKVKV 299 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L ++ LSMK VDQ+TG+ Sbjct: 300 KVLSIVG-ARVSLSMKDVDQDTGE 322 >gi|145510474|ref|XP_001441170.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408409|emb|CAK73773.1| unnamed protein product [Paramecium tetraurelia] Length = 1115 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 E IY+G V KV DFG FV F G ++GLVHIS + +RV D++K V+VK+ Sbjct: 172 EKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKV 231 Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698 + + KI LSM+ VDQN+G+ I Sbjct: 232 ISIVNE-KISLSMRDVDQNSGQEI 254 >gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera] gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera] Length = 241 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370 +R+DGR +R I ++G + + GS+ F G+T+ I V G RE E +S Sbjct: 9 LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAV-YGPREVENRSQQISDQAL 67 Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 R ++ M NF +TG+ R RR + R+ + + + I ++ Sbjct: 68 VRCEYTMA-NF---STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVEDSAGGP 179 Query: 490 DFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 D V +T +QMD K+ I EN+M +A++ K I N + +VL E+ QL Sbjct: 180 DVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCK----AIANYIREVLLENTKQL 235 >gi|312110427|ref|YP_003988743.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1] gi|311215528|gb|ADP74132.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1] Length = 387 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G V ++ DFG FV G DGLVHISQLS RVA SDVV+EG+TV VK+L Sbjct: 191 ETGQVLEGIVRRITDFGVFVD-VGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSV 249 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 250 DEENGRVSLSIK 261 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G+V +++ FGAFV +GLVHISQ+ST+R+ +V+KEG+ V K+LD + Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAE 339 Query: 681 GKIKLSMK 688 +I LS++ Sbjct: 340 RRISLSIR 347 Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +V +V I +G+V K+ D V G++ G++ IS+LS+ + KTSD V GD V K Sbjct: 10 NVYKVGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAK 69 Query: 674 LL-----DFDDRGKIKLSMKVVD 691 + + ++ G + LS K VD Sbjct: 70 VKKVEEGENEEDGLLILSKKAVD 92 >gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] Length = 488 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G V + FGAFV RDGLVHIS LS+ RV K DVVK GD V VK+L+ Sbjct: 286 EPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVKVGDKVTVKVLEV 345 Query: 678 DDRGK-IKLSMKVVD 691 D + K I L+M++ D Sbjct: 346 DQQSKRISLTMRLDD 360 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G++ FGAF +DGL+H+S+L+ RV K D VK GD K+L+ Sbjct: 203 KVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEI 262 Query: 678 DDRG-KIKLSMK 688 D G +I LS++ Sbjct: 263 DPDGTRISLSLR 274 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+V + +G FV RDGLVHIS++S R+ SD+V+ GDTV V++ D D + Sbjct: 110 EGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDARR 169 Query: 683 IKLSMKVVDQNTG 695 I L+M+ +++ G Sbjct: 170 ISLTMRSQERSEG 182 >gi|289423347|ref|ZP_06425155.1| protein YhgF [Peptostreptococcus anaerobius 653-L] gi|289156278|gb|EFD04935.1| protein YhgF [Peptostreptococcus anaerobius 653-L] Length = 716 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + S+ D+ E ++ G V V+DFGAFV DGLVHISQ+S +RV SD++ Sbjct: 631 RKDVMSLEDLEEDMEL-TGTVRNVVDFGAFVDIGIKNDGLVHISQISNKRVKNPSDLLTV 689 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK++ D +RGK+ LSMK V Q Sbjct: 690 GDIVKVKVIGIDKERGKVSLSMKNVKQ 716 >gi|198426278|ref|XP_002127628.1| PREDICTED: similar to ATP-dependent RNA helicase DHX8 (DEAH box protein 8) (RNA helicase HRH1) [Ciona intestinalis] Length = 1185 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 5/90 (5%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R I + P I++G+V +M FG FV G R +GLVHIS+L E RV++ SDVVK Sbjct: 224 RQIPEEPTPGDIFEGRVTSIMQFGCFVQLEGLRKRIEGLVHISELRAEGRVSQVSDVVKR 283 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 G VK++ F K L+MK VDQ TG+ Sbjct: 284 GQKCKVKVISFTG-TKTSLTMKDVDQITGE 312 >gi|94984781|ref|YP_604145.1| RNA binding S1 [Deinococcus geothermalis DSM 11300] gi|94555062|gb|ABF44976.1| RNA binding S1 [Deinococcus geothermalis DSM 11300] Length = 127 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 46/67 (68%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V +V DFGAFV F GLVHISQ++ V D V+EG+TV VK+L D+RG Sbjct: 9 VVEGRVTRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGETVEVKVLGRDERG 68 Query: 682 KIKLSMK 688 ++ LS+K Sbjct: 69 RLDLSIK 75 >gi|145549828|ref|XP_001460593.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428423|emb|CAK93196.1| unnamed protein product [Paramecium tetraurelia] Length = 1111 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 E IY+G V KV DFG FV F G ++GLVHIS + +RV D++K V+VK+ Sbjct: 176 EKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKV 235 Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698 + + KI LSM+ VDQN+G+ I Sbjct: 236 ISIVNE-KIALSMRDVDQNSGQEI 258 >gi|311030567|ref|ZP_07708657.1| 30S ribosomal protein S1 [Bacillus sp. m3-13] Length = 380 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + D E ++ +G V ++ DFGAFV G DGLVHISQLS E V K SDVV EG V V Sbjct: 181 LLDTIETGQVLEGTVQRITDFGAFVDIGGV-DGLVHISQLSYEHVGKPSDVVTEGQKVNV 239 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D D +I LS+K Sbjct: 240 KVLSVDRDNERISLSIK 256 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +++ FGAFV +GLVHISQ+S + + +V+ EGD V VK+LD ++ Sbjct: 275 VTEGVVKRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLTEGDKVQVKVLDVNEAD 334 Query: 682 -KIKLSMK 688 +I LS++ Sbjct: 335 QRISLSIR 342 >gi|242012890|ref|XP_002427158.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative [Pediculus humanus corporis] gi|212511441|gb|EEB14420.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative [Pediculus humanus corporis] Length = 1236 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 PEV KIY G++ ++ FG FV R +GLVHISQL E R+ +DVV G V V Sbjct: 278 PEVGKIYNGKIANIVPFGCFVQLENLRKRWEGLVHISQLRREGRITTVADVVSRGQKVKV 337 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L + K+ LS+K VDQ+TGK Sbjct: 338 KVLSVTGQ-KVSLSIKDVDQDTGK 360 >gi|322795735|gb|EFZ18414.1| hypothetical protein SINV_08066 [Solenopsis invicta] Length = 258 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 E+N+I+ G+V V ++GAFV G + GL+H +Q+ST V ++V+++G+ VW K++ Sbjct: 5 ELNQIFLGEVASVQNYGAFVRIPGTPQQGLIHRTQVSTAHVDNVAEVLQKGERVWCKVIS 64 Query: 677 FDDRGKIKLSMKVVDQNTG 695 + GK+ LSMK V+Q G Sbjct: 65 VGEDGKVGLSMKYVNQGNG 83 >gi|291545887|emb|CBL18995.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5] Length = 358 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG+V ++ DFGAFV D L+H+SQ+S E VAK SDV+ G + K++DF+ Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFN 335 Query: 679 --DRGKIKLSMKVVDQNTGK 696 DR KI LSMK ++ N+ + Sbjct: 336 GEDR-KISLSMKALEDNSAE 354 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%) Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 LAE E +E++ I V +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 177 LAEKAEKQKELLAKIN----VGDKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + D + KI LS+K ++N Sbjct: 232 NPKKVFNVGDKVTVLIKDING-DKIALSLKFPEEN 265 >gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM 1728] gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum] Length = 248 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 15/213 (7%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R I Q G+L R GS+ +I I+V G +E Y Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSA-YIEWGGNKIMVGVYGPKE--AYPKHSQDIDH 73 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN + E R G P RR + ++ A+ + QFP + + E+ Sbjct: 74 AIVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSI-MIEQFPRAEIDVYIEVL 131 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D + +A + +++AL DAGVP+ V G G V D ++L D+S +ED+ G D Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKV---DGHMVL-DLSKEEDNYGEAD 187 Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMAL 521 +A I MQMD G ++E+ + A+ Sbjct: 188 IPIAIMPKTGDIVLMQMD---GDVTEDELYQAM 217 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 30/222 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K++ G + R +DG+ +G ++ V Y + +D D + Y + Sbjct: 28 RPIKIQAGVLNR-ADGSAYIEWGGNKIMVGVYGPKEAYPKHSQD-IDHAIVKARYNMAAF 85 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSP 126 +V + R+ P + IS++I ++ + + + E V I V+Q D + Sbjct: 86 SVDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD--AGT 137 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS---GTQ 182 + + AA+ AL +G+P VVG ++G VL+ +ED G D+ ++ T Sbjct: 138 RIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPKTG 197 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 D VLM Q+ DV D + + + EA +++++ Sbjct: 198 DIVLM------QMDGDVTEDEL---YQAMDMIFEATKRISQI 230 >gi|330935553|ref|XP_003305025.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1] gi|311318215|gb|EFQ86962.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1] Length = 1214 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKT 660 E R + + P + KIY G+V + DFG FV+ G + DGLVH++Q+ RV Sbjct: 233 EFRRPPTPELDEEPVLYKIYNGKVTGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHP 292 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SD+V V VK++ ++ G+I LSMK VDQ TG+ Sbjct: 293 SDLVSRWQEVKVKVIKTEN-GRISLSMKEVDQQTGR 327 >gi|241152816|ref|XP_002406956.1| RNA helicase, putative [Ixodes scapularis] gi|215493984|gb|EEC03625.1| RNA helicase, putative [Ixodes scapularis] Length = 1122 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 P V +IY G+V +M FG FV G +GLVHISQL E R+ DVV G V V Sbjct: 167 PVVGQIYNGKVTNIMQFGCFVQLEGLPRRWEGLVHISQLRREGRITNVGDVVARGQRVKV 226 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L F + K LSMK VDQ+TG+ Sbjct: 227 KVLSFTGQ-KTSLSMKDVDQDTGE 249 >gi|239827521|ref|YP_002950145.1| 30S ribosomal protein S1 [Geobacillus sp. WCH70] gi|239807814|gb|ACS24879.1| RNA binding S1 domain protein [Geobacillus sp. WCH70] Length = 387 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G V +V DFG FV G DGLVHISQLS RVA S+VVKEG+TV VK+L Sbjct: 191 EPGQVLEGTVRRVTDFGVFVD-VGGFDGLVHISQLSHTRVAHPSEVVKEGETVKVKVLAV 249 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 250 DEENGRVSLSIK 261 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G+V +++ FGAFV +GLVHISQ+S +R+ +V+KEG+ V K+LD ++ Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGVEGLVHISQISNKRIGTPHEVLKEGEEVKAKVLDVNEAE 339 Query: 681 GKIKLSMK 688 +I LSM+ Sbjct: 340 RRISLSMR 347 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +V +V I +G+VVK+ D V G++ G++ IS+LS+ + KTSD V GD V K Sbjct: 10 NVYKVGDIVRGKVVKLEDKQVLVDIEGSKQSGIIPISELSSLHIEKTSDAVSVGDEVTAK 69 Query: 674 LL-----DFDDRGKIKLSMKVVDQN 693 + + ++ G + LS K VD + Sbjct: 70 VKKVEEGENEEDGLLILSKKAVDAD 94 >gi|302835331|ref|XP_002949227.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f. nagariensis] gi|300265529|gb|EFJ49720.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f. nagariensis] Length = 1359 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 D PE+ +Y+G+V M G FV +F +GLVHI+ + + + +DVVK G+ VW Sbjct: 246 DAPELGGVYRGRVTGTMGTGCFVELINFAKKMEGLVHIANICKKPIQSPTDVVKRGEEVW 305 Query: 672 VKLLDFDDRG-----KIKLSMKVVDQNTGK 696 VK++ G ++ LSM+ VDQ TGK Sbjct: 306 VKVIGMGSVGANGQQRLSLSMRDVDQATGK 335 >gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C] gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K] gi|220917535|ref|YP_002492839.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1] gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C] gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K] gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1] Length = 568 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681 KG+V KV DFGAFV +GLVH+S++ ERV DVV+EG V VK++D D DR Sbjct: 467 KGRVTKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVIDMDLQDR- 525 Query: 682 KIKLSMKVVDQNTGK 696 K+ LSMK V+++ G+ Sbjct: 526 KVALSMKAVNRDGGE 540 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 KG+VV + D+GAF+ +GLVH+S++S T+RV S +V GD V +LD D + K Sbjct: 293 KGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAK 352 Query: 683 -IKLSMKVVDQN 693 I L MK ++ N Sbjct: 353 RISLGMKQIEAN 364 Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 V +D D K S + +IEA + + D + +G+V V DFG FV D Sbjct: 343 VVLDIDPKAKRISLGMKQIEANPWTL--LEDKYPIGTTIRGEVRNVTDFGIFVGVEEGID 400 Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 GLVH+S +S TER+ + K+GD V +L+ D Sbjct: 401 GLVHVSDISWTERIKHPGEKFKKGDVVEAVVLNID 435 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I KG V + D+GAF+ G DGL+H++ +S R+ S++ + G V V +L FD Sbjct: 206 ILKGVVKNLTDYGAFIDLGGI-DGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPTS 264 Query: 682 -KIKLSMKVVDQN 693 ++ L +K + ++ Sbjct: 265 ERVSLGLKQIQED 277 >gi|261368046|ref|ZP_05980929.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum variabile DSM 15176] gi|282570035|gb|EFB75570.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum variabile DSM 15176] Length = 639 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 2/76 (2%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +VP V + VV + FGAFV DGLVHIS++S ERV K SDV+K GD V VK Sbjct: 555 NEVP-VGTEFTAPVVSITKFGAFVRIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVK 613 Query: 674 LLDFD-DRGKIKLSMK 688 L + D DR +I LSMK Sbjct: 614 LTNVDFDRKRISLSMK 629 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y+G V + +GAFV G DGL HIS+LS + S+VV GD + V + + Sbjct: 473 EVGKKYQGVVKSLTSYGAFVDI-GGVDGLCHISELSWSNIKHPSEVVNVGDEIEVYVKSY 531 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 532 DPENQKVSLGYKKEEDN 548 >gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941] Length = 503 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G + + FGAFV RDGLVHIS+LS RVA+ D VK GD V V++LD Sbjct: 319 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKVGDKVQVRVLDV 378 Query: 678 DDRGK-IKLSMKVVD 691 D + K I LS+++ D Sbjct: 379 DPQSKRISLSLRLED 393 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 +G+V + +G FV RDGLVHIS++S R+ SD+VK GDTV V++ + G + Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202 Query: 683 IKLSMKV 689 I L+M++ Sbjct: 203 ISLTMRM 209 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 +G V + FG FV +DGLVH+S+L+ RV K DVV+ G T K+L+ D G + Sbjct: 242 EGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGAR 301 Query: 683 IKLSMK 688 I LS++ Sbjct: 302 ISLSLR 307 >gi|307243636|ref|ZP_07525779.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493005|gb|EFM65015.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM 17678] Length = 720 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 13/135 (9%) Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619 D++ + IG+G ++ I+E+ +I + GT I + + ++E E + Sbjct: 594 DKLSSDIGVGQATLKDIIEEIKKPGRDIRESGTKPILRTDVMQLEDLEEGM--------- 644 Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 + G V V+DFGAFV DGLVHIS++S + V SD + GD V VK++ D Sbjct: 645 --VLNGTVRNVVDFGAFVDIGIKNDGLVHISKISNKMVKNASDFLTVGDIVMVKVIGIDK 702 Query: 679 DRGKIKLSMKVVDQN 693 D+G++ LSMK V Q+ Sbjct: 703 DKGRVSLSMKGVSQD 717 >gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] Length = 419 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 K+ S+ IE +E + + T + EV K++KG V + DFGAFV G DGL+HIS+L Sbjct: 182 KVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGV-DGLIHISEL 240 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 S RV S+V+K GD V V +L+FD ++ K+ L + ++ N Sbjct: 241 SWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 282 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%) Query: 611 RSITDVP--EVNKIYK-GQVVKVM-----DFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 R + D P ++ + YK G VVKV FGAFV DGLVHISQ+S++R+AK D Sbjct: 277 RKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVED 336 Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 ++ G V K+++ D + KI LS+K V Sbjct: 337 ALEIGMKVDAKIIEVDGENKKISLSIKEV 365 >gi|295103120|emb|CBL00664.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Faecalibacterium prausnitzii SL3/3] Length = 636 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + VV + FGAFV DGLVHIS++S +RV K SD +K GD V VKLLD D Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617 Query: 679 -DRGKIKLSMKVVDQN 693 D+ +I LSMK + N Sbjct: 618 FDKKRISLSMKALLNN 633 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y G V + +GAFV G DGL HIS+LS R+ S+VV GDT+ V + D Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 531 DTENHKVSLGYKKSEDN 547 >gi|145346016|ref|XP_001417493.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577720|gb|ABO95786.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1135 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAF---VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P V +Y+G+V VMDFGAF V F +GLVH+S ++ + D + G++V+VK Sbjct: 169 PSVGGVYRGRVTNVMDFGAFVELVEFKRKAEGLVHVSAITDRHLKSAKDGARRGESVFVK 228 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L+ + KI LSMK VDQ +GK Sbjct: 229 VLNRNG-NKISLSMKDVDQISGK 250 >gi|255526510|ref|ZP_05393420.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296185879|ref|ZP_06854285.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] gi|255509829|gb|EET86159.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|296049547|gb|EFG88975.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7] Length = 388 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 S+ + ++ + +G+V+K+ FGAFV +GLVHIS++S ER+AK SDV+ GD V Sbjct: 278 ESVGNKFKIGDVVEGEVLKLASFGAFVEIQPGVEGLVHISEISEERIAKPSDVLNLGDKV 337 Query: 671 WVKLLDFDDR-GKIKLSMK 688 VK+LD D++ +I LS+K Sbjct: 338 RVKILDIDNKENRISLSIK 356 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V ++ FGAFV G DGL+H+S+LS +RV +DVV GD V V +L D + KI Sbjct: 207 GVVSRLAKFGAFVDLGGV-DGLIHVSELSWKRVNNPADVVSVGDKVEVYILSVDKENNKI 265 Query: 684 KLSMKVVDQN 693 L++K V++N Sbjct: 266 ALALKDVNEN 275 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679 ++ KG+++ V + A V+ DG++ S++ SD++KE + ++V +LD +D Sbjct: 29 EVVKGKIISVTENHAIVNIGYMSDGILSKSEVVENEEDNLSDILKENEEIYVYVLDMNDG 88 Query: 680 RGKIKLSMKVVDQ 692 G + LS K D+ Sbjct: 89 EGNVLLSKKAADK 101 >gi|109000931|ref|XP_001098288.1| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Macaca mulatta] Length = 217 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|238544547|dbj|BAH60899.1| putative ribosomal protein S1 [Desulfotignum balticum] Length = 486 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 8/92 (8%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 EI+AAR+ DV + + + +G+V+++M FGAF+ +G+ HIS+LS RV K Sbjct: 189 EIKAARQAF--FADVSQGDTL-QGKVIRLMPFGAFIELAPGVEGMAHISELSWSRVEKPD 245 Query: 662 DVVKEGDTVWVKLL-----DFDDRGKIKLSMK 688 +VVK GDTV VKLL D D KI LS+K Sbjct: 246 EVVKPGDTVLVKLLSITPQDGQDLPKISLSLK 277 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V+++ +FGAFV DGLVHIS++S T RV + +VV++G V V + D D + Sbjct: 299 GKVMRITNFGAFVEIAPGVDGLVHISEMSHTRRVTRPEEVVEKGQDVQVVIKSIDMDAKR 358 Query: 683 IKLSMK 688 + LS+K Sbjct: 359 VSLSIK 364 >gi|297564549|ref|YP_003683521.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM 9946] gi|296848998|gb|ADH62013.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946] Length = 129 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G+V ++MDFGAFV GLVHISQ++ E V D + EG+ + V +L Sbjct: 4 EAGAIVEGRVTRIMDFGAFVELPNGESGLVHISQIAHEFVKNVRDHLSEGEVIQVMVLGR 63 Query: 678 DDRGKIKLSMK 688 DD+G++ LS+K Sbjct: 64 DDKGRLDLSIK 74 >gi|332972994|gb|EGK10934.1| YhgF like protein [Kingella kingae ATCC 23330] Length = 755 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 10/106 (9%) Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G K+AS + E + I+D+ EV I +G V V +FGAFV +DGLV Sbjct: 617 DPRGEFKMASFT--------EGVNEISDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLV 667 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 HIS LS + VA DVVK GD V VK+L+ D R +I L+M++ D+ Sbjct: 668 HISMLSNKFVADPRDVVKAGDVVKVKVLEVDAARKRIALTMRLEDE 713 >gi|303241879|ref|ZP_07328373.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio cellulolyticus CD2] gi|302590553|gb|EFL60307.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio cellulolyticus CD2] Length = 685 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 L E E A++ ++ D EV KIY G V + DFG FV G DGL+HIS+LS R+ Sbjct: 464 LLEEEKAKKS-KAFWDEVEVGKIYSGVVKSLTDFGVFVDIGGV-DGLIHISELSWSRIKH 521 Query: 660 TSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693 S+VVK GD V V +L+F ++GKI L + + N Sbjct: 522 PSEVVKVGDKVQVSILEFKKEKGKISLGYRKTEDN 556 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 6/74 (8%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684 +V++ FG FV DGLVHISQ+S++R+AK DV+ G V K+L+FD + KI Sbjct: 574 KVLRFAPFGTFVELEEGIDGLVHISQISSKRLAKPEDVLTAGMKVDAKILEFDLENKKIS 633 Query: 685 LSMKVVDQNTGKPI 698 LS+K V KPI Sbjct: 634 LSIKEV-----KPI 642 >gi|297282805|ref|XP_002802330.1| PREDICTED: nucleolar protein of 40 kDa [Macaca mulatta] Length = 243 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|114555245|ref|XP_001158613.1| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Pan troglodytes] gi|30316450|gb|AAF72518.3| LDC4 [Homo sapiens] gi|119628030|gb|EAX07625.1| zinc finger, CCHC domain containing 17, isoform CRA_d [Homo sapiens] Length = 217 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|332254548|ref|XP_003276391.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 3 [Nomascus leucogenys] Length = 216 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|242777760|ref|XP_002479099.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces stipitatus ATCC 10500] gi|218722718|gb|EED22136.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces stipitatus ATCC 10500] Length = 1222 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 I D P ++KIY G+V + DFGAFV+ G R DGLVH+S + RV SD+V G Sbjct: 255 IDDQPVLHKIYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ ++ Sbjct: 315 PVKVKVISIQG-TRIGLSMKEVDQVTGRDLI 344 >gi|291294665|ref|YP_003506063.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM 1279] gi|290469624|gb|ADD27043.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279] Length = 125 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G+V ++M+FGAFV F GLVHISQ++ E V D + EGD V V +L Sbjct: 4 EAGAIVEGRVTRIMEFGAFVEFPNGESGLVHISQVAHEFVKNIRDHLNEGDVVSVLVLGR 63 Query: 678 DDRGKIKLSMK 688 D++G++ LS+K Sbjct: 64 DEKGRLDLSIK 74 >gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium thermocellum ATCC 27405] gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium thermocellum JW20] gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium thermocellum ATCC 27405] gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium thermocellum JW20] gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium thermocellum DSM 1313] Length = 694 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 K+ S+ IE +E + + T + EV K++KG V + DFGAFV G DGL+HIS+L Sbjct: 457 KVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGV-DGLIHISEL 515 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 S RV S+V+K GD V V +L+FD ++ K+ L + ++ N Sbjct: 516 SWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 557 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%) Query: 611 RSITDVP--EVNKIYK-GQVVKVM-----DFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 R + D P ++ + YK G VVKV FGAFV DGLVHISQ+S++R+AK D Sbjct: 552 RKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVED 611 Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 ++ G V K+++ D + KI LS+K V Sbjct: 612 ALEIGMKVDAKIIEVDGENKKISLSIKEV 640 >gi|332808269|ref|XP_001158546.2| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Pan troglodytes] Length = 243 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599] gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599] Length = 389 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 2/79 (2%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +SI D +V ++ +G V ++ DFG FV G DGLVH+S+L+ RV K SDVVKEGD V Sbjct: 181 QSIMDKIQVGQVLEGTVQRMTDFGVFVDIGGV-DGLVHVSELAWNRVDKPSDVVKEGDKV 239 Query: 671 WVKLLDFD-DRGKIKLSMK 688 VK+L D + +I LS+K Sbjct: 240 KVKVLKIDRENERIGLSIK 258 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680 I G V +++ FGAF+ +GLVHISQ++ RV S+V+KEG V VK+LD Sbjct: 277 ILNGTVKRLVSFGAFIELAPGIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQE 336 Query: 681 GKIKLSMKVVDQN 693 +I LS++ V+++ Sbjct: 337 QRISLSIRAVEED 349 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 612 SITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 S+TD V + K V KV D A V DGL+ IS+LS V K SDVV GDT Sbjct: 7 SLTDATTISVGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDVVAVGDT 66 Query: 670 VWVKLLDFDD 679 VK++ +D Sbjct: 67 FEVKVIKLND 76 >gi|56420760|ref|YP_148078.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426] gi|56380602|dbj|BAD76510.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426] Length = 387 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 3/97 (3%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ ++ E E AR+ ++ + E ++ G V ++ DFG FV G DGLVHISQL Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S RVA S+VVKEGD V VK+L D ++G++ LS+K Sbjct: 225 SHTRVAHPSEVVKEGDAVKVKVLAVDPEQGRLSLSIK 261 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 + G V ++ FGAFV +GLVH+SQ++ R+ +V+KEGD V K+LD ++ Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337 >gi|313115242|ref|ZP_07800722.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622435|gb|EFQ05910.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Faecalibacterium cf. prausnitzii KLE1255] Length = 636 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + VV + FGAFV DGLVHIS++S +RV K SDV+K GD V V+LLD D Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDVLKVGDMVDVRLLDVD 617 Query: 679 -DRGKIKLSMKVV 690 D+ +I LSMK + Sbjct: 618 FDKKRISLSMKAL 630 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y G V + +GAFV G DGL HIS+LS R+ S+VV GDT+ V + D Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 531 DTENHKVSLGYKKAEDN 547 >gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter oceani DSM 16646] gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter oceani DSM 16646] Length = 672 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ +G+VVK+ +FGAFV +GLVH+SQ+S +RVA DV+KEG+T+ VK+LD Sbjct: 556 IGQVVQGKVVKLTNFGAFVELEPGVEGLVHVSQISKKRVATPKDVLKEGETIKVKILDIK 615 Query: 679 -DRGKIKLSMK 688 + +I LS+K Sbjct: 616 PEEKRISLSIK 626 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V K+ DFGAFV G DGL+HIS LS +RV S+V+ E V VK+L D + Sbjct: 473 QVIRGTVRKLTDFGAFVDI-GGYDGLIHISDLSWQRVNHPSEVLSENQEVDVKVLKVDKE 531 Query: 680 RGKIKLSMK 688 RG+I L +K Sbjct: 532 RGRISLGLK 540 Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679 KI +G VVKV D V+ DG++ +++LS + S++VK GD + V++L D+ Sbjct: 299 KIVEGTVVKVSDKEVLVNVGHKSDGIIPLNELSNLPFSSPSEIVKTGDRIKVQILKLEDN 358 Query: 680 RGKIKLSMKVVD 691 G + LS K D Sbjct: 359 EGNLILSKKRAD 370 >gi|66803084|ref|XP_635385.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4] gi|74996562|sp|Q54F05|DHX8_DICDI RecName: Full=ATP-dependent RNA helicase dhx8; AltName: Full=DEAH box protein 8 gi|60463693|gb|EAL61875.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4] Length = 1160 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTER--VAKTSDVVK 665 R I P + KIY G+V + D+G FV G RDGLVHISQ+ + R + SDVVK Sbjct: 193 REIDKEPILYKIYDGKVSSINDYGCFVTLEGIAGRRDGLVHISQILSGRTKLNHPSDVVK 252 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK+L KI LSMK VDQ+TG+ Sbjct: 253 RNQQVKVKILSVAS-SKISLSMKDVDQSTGR 282 >gi|138895802|ref|YP_001126255.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2] gi|196248690|ref|ZP_03147390.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] gi|134267315|gb|ABO67510.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2] gi|196211566|gb|EDY06325.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] Length = 387 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V ++ DFG FV G DGLVHISQLS RVA S+VVKEGD V VK+L Sbjct: 191 EAGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249 Query: 678 D-DRGKIKLSMK 688 D ++G++ LS+K Sbjct: 250 DPEQGRLSLSIK 261 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + G V ++ FGAFV +GLVH+SQ++ R+ +V+KEGD V K+LD ++ Sbjct: 280 VVTGTVKRLASFGAFVEIFPGVEGLVHVSQIANRRIGSPHEVLKEGDEVKAKVLDVNEAE 339 Query: 681 GKIKLSMK-VVDQNTGKP 697 +I LS++ ++++ T P Sbjct: 340 HRISLSIRALLEEETAAP 357 >gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1] Length = 514 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G + + FGAFV RDGLVHIS+LS VA+ DVVK GD V V++LD Sbjct: 322 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARVEDVVKVGDRVQVRVLDV 381 Query: 678 DDRGK-IKLSMKVVD 691 D + K I LS+++ D Sbjct: 382 DPQSKRISLSLRLED 396 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 +G+V + +G FV RDGLVHIS++S R+ SD+VK GDTV V++ + G + Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205 Query: 683 IKLSMKVVDQN 693 I L+M+ +++ Sbjct: 206 ISLTMRTKERS 216 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 +G V + FG FV +DGLVH+S+L+ RV K DVV+ G T K+L+ D G + Sbjct: 245 EGTVTGMAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGAR 304 Query: 683 IKLSMK 688 I LS++ Sbjct: 305 ISLSLR 310 >gi|157129571|ref|XP_001661730.1| ATP-dependent RNA helicase [Aedes aegypti] gi|108872147|gb|EAT36372.1| ATP-dependent RNA helicase [Aedes aegypti] Length = 1238 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 5/80 (6%) Query: 621 KIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676 KIY G+VV ++ FG FV R +GLVHISQLS+E RV +DVV D V VK++ Sbjct: 284 KIYDGRVVNIVAFGCFVQLTSFRRKKEGLVHISQLSSEGRVNNVTDVVNRNDNVKVKVIS 343 Query: 677 FDDRGKIKLSMKVVDQNTGK 696 + KI L MK VDQ TG+ Sbjct: 344 IAGQ-KISLCMKDVDQQTGQ 362 >gi|312213828|emb|CBX93830.1| similar to ATP-dependent RNA helicase DHX8 [Leptosphaeria maculans] Length = 1218 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 5/96 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQ-LSTERVAK 659 E R + D P + K+Y G+V + DFG FV+ G R DGLVH++Q L RV Sbjct: 236 EFRRPPTPELDDEPLLYKVYDGKVTGIKDFGVFVNLQGVRGKVDGLVHVTQMLEGARVNH 295 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SD+V V VK++ + GKI LSMK VDQ TG Sbjct: 296 PSDLVSRWQEVKVKVIKMEG-GKISLSMKEVDQRTG 330 >gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551] gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319] gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551] gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319] Length = 378 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V ++ DFGAFV G DGLVHISQLS RV K SDVV EGD V VK+L D Sbjct: 189 QVLEGTVQRLTDFGAFVDVGGV-DGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLSVDKS 247 Query: 680 RGKIKLSMK 688 G++ LS+K Sbjct: 248 TGRVSLSIK 256 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G V +++ FGAFV +GLVHISQ+S + + +V+ EG+ V VK+LD +++ Sbjct: 275 VVDGTVKRLVSFGAFVEVLPGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQE 334 Query: 682 -KIKLSMK 688 ++ LS++ Sbjct: 335 RRVSLSIR 342 >gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5] gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195] gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5] Length = 382 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%) Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 D V ++ ++ E E A +E+++S+ EV + G+V ++ DFGAFV G DG Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 LVHISQLS V K SDVV+EG V VK+L D D +I LS+K Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD + + Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334 Query: 681 GKIKLSMKVVDQN 693 +I LSM+ +++ Sbjct: 335 ERISLSMRELEET 347 Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K D + +K+ +D I LS + VD + Sbjct: 62 KVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str. 168] gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str. 168] gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str. SMY] gi|585942|sp|P38494|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog) [Bacillus subtilis subsp. subtilis str. 168] Length = 382 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%) Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 D V ++ ++ E E A +E+++S+ EV + G+V ++ DFGAFV G DG Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 LVHISQLS V K SDVV+EG V VK+L D D +I LS+K Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD + + Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 335 ERISLSMRELEE 346 Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K D + +K+ +D I LS + VD + Sbjct: 62 KVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 382 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%) Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 D V ++ ++ E E A +E+++S+ EV + G+V ++ DFGAFV G DG Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 LVHISQLS V K SDVV+EG V VK+L D D +I LS+K Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD + + Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 335 ERISLSMRELEE 346 Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K D + +K+ +D I LS + VD + Sbjct: 62 KVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|257437823|ref|ZP_05613578.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium prausnitzii A2-165] gi|257199746|gb|EEU98030.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium prausnitzii A2-165] Length = 636 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + VV + FGAFV DGLVHIS++S +RV K SD +K GD V VKLLD D Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617 Query: 679 -DRGKIKLSMKVV 690 D+ +I LSMK + Sbjct: 618 FDKKRISLSMKAL 630 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y G V + +GAFV G DGL HIS+LS R+ S+VV GDT+ V + D Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 531 DTENHKVSLGYKKAEDN 547 >gi|218132315|ref|ZP_03461119.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC 43243] gi|217992830|gb|EEC58831.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC 43243] Length = 808 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHISQ+S R+ D V GD V VK+LD D + Sbjct: 667 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQISNRRIEHPLDAVSVGDIVDVKVLDVDAAK 726 Query: 681 GKIKLSMKV---VDQNTGKP 697 +I L+M++ D TG+P Sbjct: 727 ARISLTMRIDENTDAFTGRP 746 >gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] Length = 240 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 VR+D R + +R + L+ GS L G+T+ I V++ +E+ L GT + Sbjct: 2 VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSM----EEKVPPFLKGTNQ 57 Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP +T E GA + R RL R++ V+ + T+ I + Sbjct: 58 GWLTAEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDA 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + G+ +AL DA +PI + VA +++G+V DG+ IL Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKREGIIKEIPIREFVAAVSVGIV-DGE---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+S +ED +D V T+SG Sbjct: 174 LDLSANEDMRAEVDMNVVMTESG 196 >gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] Length = 241 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 22/242 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLS 367 +R+DGR +R + AQ+G + + GS++F G+T+ I V G RE +Q +D Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAV-YGPREVQNRSQQIID--Q 65 Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 R ++ M NF +TG+ R RR + R+ + + + I Sbjct: 66 ALVRCEYTMA-NF---STGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYV 121 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 ++ ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVEDSAG 177 Query: 488 HMDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 D V +T +QMD K+ EN+M +A++ K I N + ++L E+ Sbjct: 178 GPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCK----AIANYIREILLENTK 233 Query: 545 QL 546 QL Sbjct: 234 QL 235 >gi|213410649|ref|XP_002176094.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Schizosaccharomyces japonicus yFS275] gi|212004141|gb|EEB09801.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Schizosaccharomyces japonicus yFS275] Length = 1082 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQL-STERVAKTSDVVKEGD 668 + D P++N +Y G V + DFG FV G R GLVHIS + RV SDVV G+ Sbjct: 201 LEDKPKINGVYTGVVSGIKDFGVFVTLDGIRQRTSGLVHISNIQQNRRVEHPSDVVAYGE 260 Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696 V+VK++ D+ K LSMK VDQ TG+ Sbjct: 261 RVYVKVIKIDEAMKKYSLSMKDVDQETGE 289 >gi|261417937|ref|YP_003251619.1| 30S ribosomal protein S1 [Geobacillus sp. Y412MC61] gi|319767251|ref|YP_004132752.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52] gi|261374394|gb|ACX77137.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61] gi|317112117|gb|ADU94609.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52] Length = 387 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ ++ E E AR+ ++ + E ++ G V ++ DFG FV G DGLVHISQL Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S RVA S+VVKEGD V VK+L D + G++ LS+K Sbjct: 225 SHTRVAHPSEVVKEGDAVKVKVLAVDPENGRLSLSIK 261 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 + G V ++ FGAFV +GLVH+SQ++ R+ +V+KEGD V K+LD ++ Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337 >gi|160945617|ref|ZP_02092843.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii M21/2] gi|158443348|gb|EDP20353.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii M21/2] Length = 636 Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + VV + FGAFV DGLVHIS++S +RV K SD +K GD V VKLLD D Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617 Query: 679 -DRGKIKLSMKVV 690 D+ +I LSMK + Sbjct: 618 FDKKRISLSMKAL 630 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y G V + +GAFV G DGL HIS+LS R+ S+VV GDT+ V + D Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 531 DTENHKVSLGYKKSEDN 547 >gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1] gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1] Length = 629 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I+ ++ E E A+ ++ + E +++G+VV++ DFG FV+ G DGLVH S+L Sbjct: 272 VIISHRAIMEAEKAKAREATVGQL-EPGAVFEGEVVEITDFGVFVNLGGI-DGLVHRSEL 329 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693 + R DVVK GD V V+++D D+ R +I LSMK + Q+ Sbjct: 330 TYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKALTQD 371 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680 KG+V + +FGAF+ +GLVH+S++S T+RV ++V+KEGD V +L D R Sbjct: 387 KGKVTNLTNFGAFIELEPGLEGLVHVSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPR 444 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 KG++ + DFG F+ +GL+HIS+L T+RV +D+ K+GD + +L+ D Sbjct: 474 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 528 >gi|227431694|ref|ZP_03913724.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352518|gb|EEJ42714.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 396 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G+V ++ DFGAFV G DGLVHIS++S +RV +DV+ +G+TV VK+L D Sbjct: 196 VGEVVEGKVARLTDFGAFVDLGGV-DGLVHISEISHDRVKNPADVLTKGETVNVKILALD 254 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 255 AEKGRISLSIK 265 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V V++LD Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAE 343 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 344 ERISLSMKALEE 355 >gi|297529605|ref|YP_003670880.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3] gi|297252857|gb|ADI26303.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3] Length = 387 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ ++ E E AR+ ++ + E ++ G V ++ DFG FV G DGLVHISQL Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S RVA S+VVKEGD V VK+L D + G++ LS+K Sbjct: 225 SHTRVAHPSEVVKEGDVVKVKVLAVDPENGRLSLSIK 261 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 + G V ++ FGAFV +GLVH+SQ++ R+ +V+KEGD V K+LD ++ Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337 >gi|295102762|emb|CBL00307.1| Ribosomal protein S1 [Faecalibacterium prausnitzii L2-6] Length = 360 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + VV + FGAFV DGLVHIS++S +RV K SD +K GD V VKLLD D Sbjct: 282 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 341 Query: 679 -DRGKIKLSMKVV 690 D+ +I LSMK + Sbjct: 342 FDKKRISLSMKAL 354 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV K Y G V + +GAFV G DGL HIS+LS R+ S+VV GDT+ V + D Sbjct: 196 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 254 Query: 678 D-DRGKIKLSMKVVDQN 693 D + K+ L K + N Sbjct: 255 DTENHKVSLGYKKAEDN 271 >gi|29124581|gb|AAH49016.1| Zcchc17 protein [Danio rerio] Length = 194 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD 662 E RE + + +P + I KG+VV V +GAFV G R GLVH S++S RV ++ Sbjct: 4 EHMREPV-GLDGLPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAE 62 Query: 663 VVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696 +V G+ VW+K++ DD+ K+ SMK V+Q TG+ Sbjct: 63 IVDVGEQVWIKVIGKEMKDDKVKLSFSMKSVNQGTGR 99 >gi|224120548|ref|XP_002318357.1| predicted protein [Populus trichocarpa] gi|222859030|gb|EEE96577.1| predicted protein [Populus trichocarpa] Length = 1207 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 E+ +YKG+V +VMD G FV R +GLVH+SQ++T R+ D VK V+VK++ Sbjct: 251 ELYGVYKGRVSRVMDTGCFVQLSDFRGKEGLVHVSQIATRRLGNAKDAVKRDQEVYVKVI 310 Query: 676 DFDDRGKIKLSMKVVDQNTGKPIV 699 K+ LSM+ VDQ++GK ++ Sbjct: 311 SILG-NKLSLSMRDVDQDSGKDLL 333 >gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929] Length = 416 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ +FGAFV G DGLVH+SQ++ ERV K SDV+K G TV VK+L D DR Sbjct: 202 VVEGTVARLTNFGAFVDL-GGMDGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDR 260 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 261 NRISLSIK 268 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V +++DFGAFV +GLVHISQ++ E + +DV+K G+ + VK+LD D Sbjct: 284 VGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIDTPADVLKVGEKIKVKVLDVD 343 Query: 679 -DRGKIKLSMKVV 690 DR ++ LS+K + Sbjct: 344 TDRKRLALSIKAL 356 >gi|46249693|gb|AAH68347.1| Zcchc17 protein [Danio rerio] Length = 235 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +P + I KG+VV V +GAFV G R GLVH S++S RV +++V G+ VW+K+ Sbjct: 15 LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 74 Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696 + DD+ K+ SMK V+Q TG+ Sbjct: 75 IGKEMKDDKVKLSFSMKSVNQGTGR 99 >gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189965|gb|EEI70032.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 413 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V ++ +FGAFV G DGLVH+SQ++ ERV K SDV+K G V VK+L D DR Sbjct: 202 IVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDR 260 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 261 NRISLSIK 268 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 4/77 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++DFGAFV +GLVHISQ++ E +A DV+K G+ + VK+LD D DR Sbjct: 287 VLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDR 346 Query: 681 GKIKLSMKVVDQNTGKP 697 ++ LS+K + T KP Sbjct: 347 KRLALSIKAL---TDKP 360 >gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577] gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290] gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577] gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290] Length = 413 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V ++ +FGAFV G DGLVH+SQ++ ERV K SDV+K G V VK+L D DR Sbjct: 202 IVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDR 260 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 261 NRISLSIK 268 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 4/77 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++DFGAFV +GLVHISQ++ E +A DV+K G+ + VK+LD D DR Sbjct: 287 VLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDR 346 Query: 681 GKIKLSMKVVDQNTGKP 697 ++ LS+K + T KP Sbjct: 347 KRLALSIKAL---TDKP 360 >gi|320334347|ref|YP_004171058.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755636|gb|ADV67393.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211] Length = 127 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + G+V +V DFGAF+ F GLVHISQ++ V S+ ++EG+ V VK+L Sbjct: 4 ESGAVATGRVTRVTDFGAFIQFENGETGLVHISQIAHSFVRSVSEHLQEGENVEVKVLGR 63 Query: 678 DDRGKIKLSMK 688 D+RG++ LS+K Sbjct: 64 DERGRLDLSIK 74 >gi|15806757|ref|NP_295477.1| hypothetical protein DR_1754 [Deinococcus radiodurans R1] gi|6459529|gb|AAF11311.1|AE002017_2 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 133 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G++ +V DFGAFV F GLVHISQ++ V D V+EG+ V VK+L D+RG Sbjct: 14 VAEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDERG 73 Query: 682 KIKLSMK 688 ++ LS+K Sbjct: 74 RLDLSIK 80 >gi|29568412|gb|AAO83393.1| Ldc4 [Danio rerio] Length = 230 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +P + I KG+VV V +GAFV G R GLVH S++S RV +++V G+ VW+K+ Sbjct: 10 LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 69 Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696 + DD+ K+ SMK V+Q TG+ Sbjct: 70 IGKEMKDDKVKLSFSMKSVNQGTGR 94 >gi|116618391|ref|YP_818762.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097238|gb|ABJ62389.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 396 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G+V ++ DFGAFV G DGLVH+S++S +RV +DV+ +G+TV VK+L D Sbjct: 196 VGEVVEGKVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGETVNVKILALD 254 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 255 AEKGRISLSIK 265 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V V++LD Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAE 343 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 344 ERISLSMKALEE 355 >gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter alkaliphilus AHT 1] gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter alkaliphilus AHT 1] Length = 678 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V +++DFGAFV +GLVHISQL+ V + S+VV++GD V VK+LD + G Sbjct: 568 VVEGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDG 627 Query: 682 K-IKLSMK 688 K + LSM+ Sbjct: 628 KRVSLSMR 635 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ + E EAA + + + ++ E +I KG V ++ +FGAFV G DGLVHIS++S Sbjct: 457 LSRKQVLEEEAAVQKDKVLAEL-EPGQIIKGTVKRLTNFGAFVD-VGGIDGLVHISEISW 514 Query: 655 ERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMK 688 R+ +V+ GD + VK+++ +R +I LS++ Sbjct: 515 HRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLR 549 >gi|187734759|ref|YP_001876871.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835] gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835] Length = 562 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D +V + GQV K+ FGAFV+ G DGL+HISQLS + V + DV+K GD + Sbjct: 437 SINDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIHISQLSEDHVERVKDVIKVGDEIT 496 Query: 672 VKLLDFDD-RGKIKLSMKVVDQNT 694 +++ D +I LS+K V+ +T Sbjct: 497 ARVIKVDSIERRIGLSIKAVNYDT 520 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 11/146 (7%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P ++ IPP + +G + E KVN DD + ++ + E E A + Sbjct: 124 FLPGSQVDIIPPRDLNEYVGK-------VYEFKIVKVN-DDRKNIVLSRREVIEAERADQ 175 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 R + V E +K+ +G V + DFGAFV G DGL+HI+ +S RV S+++ G Sbjct: 176 RQRFLETVKEGDKV-EGIVKNITDFGAFVDLRGM-DGLLHITDMSWGRVNHPSEMLHIGQ 233 Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ V +L+ D ++ ++ L +K + N Sbjct: 234 SLEVVILEVDREKERVSLGLKQMTDN 259 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVK 665 +N KG+V K++ +GAFV +GLVH+S+LS +R+ + SDV+K Sbjct: 270 INSHVKGRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLK 317 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670 + + KGQV + +GAFV DG++H+S +S T ++ S+V+K+GD V Sbjct: 357 IGTVIKGQVRNLTPYGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEV 409 >gi|328876888|gb|EGG25251.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum] Length = 1152 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 4/82 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 E+NKIY G++ + D+G FV G ++GLVH+SQ++ R+ S++VK V VK+ Sbjct: 197 ELNKIYSGRITTINDYGCFVSLEGIVGKKEGLVHVSQITKARINNPSEIVKRNQNVKVKV 256 Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696 L ++ LS+K VDQ TG+ Sbjct: 257 LSVVG-SRVSLSIKDVDQETGR 277 >gi|325283233|ref|YP_004255774.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus MRP] gi|324315042|gb|ADY26157.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP] Length = 125 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G++ +V DFGAFV F GLVHISQ++ V D V+EG+ V VK+L D+RG Sbjct: 8 VIEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDERG 67 Query: 682 KIKLSMK 688 ++ LS+K Sbjct: 68 RLDLSIK 74 >gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] Length = 238 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 21/200 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR ++ +R I+ + GS L GDT+ + T+ DE+ L G + Sbjct: 3 RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATV----DEKVPPFLRGKGQG 58 Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 Y+ LP AT + PS R + RL RA+ V+ +A T+ + ++ Sbjct: 59 WITAEYSMLPRATEVRNIRETLRPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVI 118 Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479 ++DG + A++ G+ +AL DA PI VA I+ G+V DG+ + D+ Sbjct: 119 QADGGTRTASITGAFIALGDAIRTLKDNKEIETNPIKSYVAAISAGIV-DGEKML---DL 174 Query: 480 SGDEDHLGHMDFKVAGTDSG 499 +ED +D + TD G Sbjct: 175 RFEEDSRAQVDMNLVMTDEG 194 >gi|89099121|ref|ZP_01172000.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911] gi|89086251|gb|EAR65373.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911] Length = 385 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 + +++ G + ++ DFGAFV G DGLVHISQLS E V K SDVV+EG V VK+L Sbjct: 192 QADQVLDGTIQRITDFGAFVDIGGI-DGLVHISQLSYEHVEKPSDVVEEGQKVQVKVLSV 250 Query: 678 D-DRGKIKLSMK 688 D D +I LS+K Sbjct: 251 DRDNERISLSIK 262 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V +++ +GAFV +GLVHISQ+S + + +V++EG V VK+LD ++ + + Sbjct: 284 GVVRRLVSYGAFVEVFPGVEGLVHISQISHKHIGTPHEVLEEGQQVQVKVLDVNENDQ-R 342 Query: 685 LSMKVVD 691 LS+ + D Sbjct: 343 LSLSIKD 349 >gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942] gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942] Length = 382 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V ++ DFGAFV G DGLVHISQLS V K SDVV+EG V VK+L Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244 Query: 678 D-DRGKIKLSMK 688 D D +I LS+K Sbjct: 245 DRDNERISLSIK 256 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G+V +++ FGAFV +GLVHISQ+S + + +V++EG V VK+LD ++ Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEGE 334 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 335 ERISLSMRELEE 346 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K D + +K+ +D I LS + VD + Sbjct: 62 KADDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC] gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC] Length = 794 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ E + +G V V FGAFV +DGLVH+SQL+ + V+ +VVK G Sbjct: 661 EGVEEITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVSDAREVVKTG 719 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+L+ D RG+I LSMK+ Sbjct: 720 DIVKVKVLEVDVARGRISLSMKL 742 >gi|168185953|ref|ZP_02620588.1| protein YhgF [Clostridium botulinum C str. Eklund] gi|169295878|gb|EDS78011.1| protein YhgF [Clostridium botulinum C str. Eklund] Length = 718 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V D+VK GD V VK+L+ D+ RG+I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVKVLEVDEKRGRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313] gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313] Length = 405 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +V+DFGAFV +GLVH+SQ+S + +A SDV+K GD V VK+LD + +R Sbjct: 287 VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPER 346 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 347 QRLSLSIKALEE 358 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I D V + +G+V ++ +FGAF+ G DGLVH+S++S ERV++ SDV+ G+ V V Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDLGGV-DGLVHVSEISHERVSQPSDVLSVGEEVKV 251 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D +R +I LS+K Sbjct: 252 KVLGLDPERERISLSIK 268 >gi|194379410|dbj|BAG63671.1| unnamed protein product [Homo sapiens] Length = 243 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 MKVV+Q TGK Sbjct: 62 PMKVVNQGTGK 72 >gi|320103097|ref|YP_004178688.1| RNA-binding S1 domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750379|gb|ADV62139.1| RNA binding S1 domain protein [Isosphaera pallida ATCC 43644] Length = 531 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I K +V K+MDFGAF A +GL+HIS+L+ RV + SDV+KEGD + VK+L D Sbjct: 407 IVKVKVTKIMDFGAFAEIEPAVEGLIHISELANRRVNRVSDVLKEGDELEVKILSIDPAE 466 Query: 681 GKIKLSMK 688 KI LS++ Sbjct: 467 RKIALSLR 474 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G+V V DFGAFV G DGL+H+S +S R VV G + VK+L D + Sbjct: 321 QVRQGKVRTVRDFGAFVDLGGV-DGLLHVSDMSWVRNKDARAVVSVGQELTVKVLKIDRE 379 Query: 680 RGKIKLSMK 688 K+ L +K Sbjct: 380 NRKVSLGLK 388 >gi|108762762|ref|YP_631752.1| 30S ribosomal protein S1 family protein [Myxococcus xanthus DK 1622] gi|108466642|gb|ABF91827.1| ribosomal protein S1 family protein [Myxococcus xanthus DK 1622] Length = 548 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 ++++++ E +++ +G+VV++ FGAFV DGLVHIS LS R+A DVVKEG+T+ Sbjct: 331 KALSEIKEGDRL-QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVKEGETI 389 Query: 671 WVKLLDFDDRGK 682 WV + D + K Sbjct: 390 WVSVEKIDTQEK 401 >gi|326436604|gb|EGD82174.1| DEAH box polypeptide 8 [Salpingoeca sp. ATCC 50818] Length = 1288 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 6/88 (6%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST--ERVAKTSDVVKEGDTVW 671 P K+Y+G+V +M +G FV G R DG+VH+S +S VA +DVVK G TV+ Sbjct: 309 PVQGKVYEGKVTGIMQYGCFVSLLGVRGRPDGMVHVSNMSPTGAHVADPNDVVKRGQTVY 368 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 VK+ + KI L+MK +DQ+TG+ + Sbjct: 369 VKVQSRIN-NKISLTMKDIDQSTGEDVA 395 >gi|154286240|ref|XP_001543915.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1] gi|150407556|gb|EDN03097.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1] Length = 1226 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 250 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQVGARVNHPSDLVSKGQ 309 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ +I LSMK VDQ+TG+ Sbjct: 310 PVKVKVITIQG-SRIGLSMKEVDQSTGR 336 >gi|295670043|ref|XP_002795569.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Paracoccidioides brasiliensis Pb01] gi|226284654|gb|EEH40220.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Paracoccidioides brasiliensis Pb01] Length = 1224 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY+G+V + DFGAFV+ G R DGLVH+S + RV SD+V +G Sbjct: 248 LDDQPILFKIYEGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ +V Sbjct: 308 PVKVKVVSIQG-SRIGLSMKEVDQVTGRDLV 337 >gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1] gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1] Length = 248 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R I + G+L R GS+ +I I+V G +E Y Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSA-YIEWGGNKIIVGVYGPKE--AYPKHSQDIDH 73 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 YN + E R G P RR + ++ A+ + QFP + + E+ Sbjct: 74 AVVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSI-MIEQFPRAEIDVYIEVL 131 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++D + +A + +++AL DAG+P+ V G G V D I+L D+S +ED+ G D Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKV---DGHIVL-DLSKEEDNFGEAD 187 Query: 491 FKVA--GTDSGITAMQMD 506 +A I +QMD Sbjct: 188 IPMAIMPKTGEIVLLQMD 205 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 30/222 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68 RP+K+E G + R +DG+ +G ++ V Y + +D D + Y + Sbjct: 28 RPIKIEAGVLNR-ADGSAYIEWGGNKIIVGVYGPKEAYPKHSQD-IDHAVVKARYNMAAF 85 Query: 69 AVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSP 126 +V + R+ P + IS++I ++ + + + E V I V+Q D + Sbjct: 86 SVDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD--AGT 137 Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL---FVSGTQ 182 + + AA+ AL +G+P VVG ++G VL+ +ED G D+ + T Sbjct: 138 RIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTG 197 Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224 + VL+ Q+ DV D + +IEA K++++ Sbjct: 198 EIVLL------QMDGDVTEDEF---YEATSMIIEATKKISQI 230 >gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] Length = 240 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+D R + +R + L+ GS L G+T+ I V++ +E+ L GT + Sbjct: 2 IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSM----EEKVPPFLKGTNQ 57 Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP +T E G + R RL R++ V+ + T+ I + Sbjct: 58 GWLTAEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDT 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + G+ +AL DA +PI + VA +++G+V DG+ IL Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKRDGVIKEIPIKEFVAAVSVGIV-DGE---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+S +ED +D V T+SG Sbjct: 174 LDLSANEDMRAEVDMNVVMTESG 196 >gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] Length = 242 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 19/221 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369 R+DGR +R + +VG++ R GS+LF G+T+ I V G RE + Q V+S Sbjct: 11 RVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSNEAL 69 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428 R ++ M F +TG+ R RR + R+ + + T P++ + I + Sbjct: 70 VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYLEDSAGG 180 Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525 D V A D +T +QMD K+ EN+M +A++ K Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPMDTFENVMGLAIEGCK 220 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 23/220 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68 R LK E G +AR +DG+ L G T V+A V R +++ GQ VN E Y Sbjct: 21 RQLKGEVGIVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSNEALVRCEY 74 Query: 69 AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + + G RR + R TE ++I + ++ SI L ++ + + V+Q D + Sbjct: 75 RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPHSQIDIYVQVLQADGGT 132 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181 ++ AA+ AL +G+P V Y+ +L+ ED G D+ V Sbjct: 133 RSACIN--AATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221 D V +++++A +L D + + CK + I ++ Sbjct: 191 MDKVTLLQMDA-KLPMDTFENVMGLAIEGCKAIASYIREV 229 >gi|225558449|gb|EEH06733.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus G186AR] Length = 1266 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 290 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 349 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ +I LSMK VDQ TG+ Sbjct: 350 PVKVKVITIQG-SRIGLSMKEVDQGTGR 376 >gi|224081357|ref|XP_002189446.1| PREDICTED: putative S1 RNA binding domain protein [Taeniopygia guttata] Length = 234 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 4/74 (5%) Query: 627 VVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGK 682 V V DFGAF+ G R GLVH SQLS+ V ++++ GD VWVKL+ DD+ K Sbjct: 13 VAAVTDFGAFIRIPGCRKQGLVHRSQLSSCPVDSPAEMLAVGDRVWVKLIGREMKDDKLK 72 Query: 683 IKLSMKVVDQNTGK 696 + LSMKVV Q TGK Sbjct: 73 LSLSMKVVHQGTGK 86 >gi|218294649|ref|ZP_03495503.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23] gi|218244557|gb|EED11081.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23] Length = 125 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G+VV+V DFGAFV G GLVHISQ++ E V D + EGD V V + Sbjct: 4 EAGSIVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMVKGR 63 Query: 678 DDRGKIKLSMK 688 D +G++ LS+K Sbjct: 64 DPKGRLDLSIK 74 >gi|253681106|ref|ZP_04861909.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873] gi|253562955|gb|EES92401.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873] Length = 718 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G V V DFGAFV +DGLVHISQLS + V D+VK GD V V++L+ D+ R Sbjct: 650 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKR 709 Query: 681 GKIKLSMK 688 G+I LSMK Sbjct: 710 GRISLSMK 717 >gi|226355945|ref|YP_002785685.1| ribosomal protein S1-like RNA-binding domain-containing protein [Deinococcus deserti VCD115] gi|226317935|gb|ACO45931.1| putative Ribosomal protein S1-like RNA-binding domain protein [Deinococcus deserti VCD115] Length = 126 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 44/65 (67%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G++ +V DFGAF+ F GLVH+SQ++ V D V+EGDTV VK+L D+RG Sbjct: 9 VAEGRITRVTDFGAFIQFENGETGLVHMSQIAHSFVRNIHDHVREGDTVEVKVLGRDERG 68 Query: 682 KIKLS 686 ++ LS Sbjct: 69 RLDLS 73 >gi|23099255|ref|NP_692721.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831] gi|22777484|dbj|BAC13756.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831] Length = 376 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G V ++ +FGAFV G DGLVHISQL+ E V KTSDVV EGD + V++L Sbjct: 183 EPGQVIEGTVQRITNFGAFVDLGGV-DGLVHISQLAHEHVEKTSDVVSEGDKIKVEVLSV 241 Query: 678 D-DRGKIKLSMK 688 D D +I LS K Sbjct: 242 DLDNERISLSHK 253 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +G V +++ FGAFV +GLVHISQ++ + +V++ G TV VK+LD Sbjct: 268 KVGSTIEGTVKRLVSFGAFVELLPGVEGLVHISQIANRHIGTPQEVLEIGQTVQVKVLDV 327 Query: 678 DDRG-KIKLSMK 688 ++ +I LS+K Sbjct: 328 SEQDQRISLSIK 339 >gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811] gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811] Length = 397 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 256 TEKGRISLSIK 266 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GDTV VK+LD Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDTVQVKVLDIKPAE 344 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 345 ERISLSMKALEE 356 >gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 259 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 24/251 (9%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGRD +++R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y+ +P AT S G S R + RL RA+ V+ A T+ I + Sbjct: 59 WITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ GS +AL+DA GV PI VA +++G+V D L Sbjct: 119 VIQADGGTRTASITGSFVALVDAMNKLLQKGVISKMPIKSFVAAVSVGIVGDNK----LL 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 D+ ED H+D + TD G +Q + G S++ L A+ G I+ Sbjct: 175 DLCYLEDCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQK 234 Query: 537 KVLSESRLQLG 547 + L + L++G Sbjct: 235 EALGDISLKIG 245 >gi|226293915|gb|EEH49335.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Paracoccidioides brasiliensis Pb18] Length = 1224 Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G R DGLVH+S + RV SD+V +G Sbjct: 248 LDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ +V Sbjct: 308 PVKVKVISIQG-SRIGLSMKEVDQVTGRDLV 337 >gi|169611168|ref|XP_001799002.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15] gi|111062741|gb|EAT83861.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15] Length = 1217 Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAK 659 E R + D P + K+Y G+V V DFG FV+ G + DGLVH++Q+ RV Sbjct: 231 EFRRPPTPELDDEPVLYKVYDGKVTGVKDFGCFVNLQGVKGKVDGLVHVTQMVEGARVNH 290 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 SD+V V VK++ ++ G+I LSMK VDQ +G+ Sbjct: 291 PSDIVSRMQQVKVKVVKMEN-GRISLSMKEVDQQSGR 326 >gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna ATCC 53516] gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna ATCC 53516] Length = 675 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+VV ++DFGAFV +GLVH+S++S E V K SD + GDTV VK+L+ + ++ Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613 Query: 681 GKIKLSMKVVDQNTGKP 697 +I LSMK + KP Sbjct: 614 KRIALSMKALLPKPEKP 630 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+V ++ DFGAF+ G DGL+HIS +S R+ DV+K GD + +L + ++ +I Sbjct: 472 GKVQRLTDFGAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRI 530 Query: 684 KLSMKVVDQ 692 L +K + Q Sbjct: 531 SLGLKQLQQ 539 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%) Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +NKIY KG+V+ V D V+ DG++ + +LSTE D+ K+GD + V Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346 Query: 674 LLDFDD-RGKIKLSMKVVD 691 ++ DD G + LS K V+ Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365 >gi|225684289|gb|EEH22573.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 [Paracoccidioides brasiliensis Pb03] Length = 1224 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G R DGLVH+S + RV SD+V +G Sbjct: 248 LDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ +V Sbjct: 308 PVKVKVISIQG-SRIGLSMKEVDQVTGRDLV 337 >gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284] gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284] Length = 403 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E++ S+ + ++ G+V ++ +FGAFV G DGLVHIS++S ERV K SDV Sbjct: 191 EKRQEVLSSLQE----GEVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYERVEKPSDV 245 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 +K G+ V VK+L D +R +I LS+K Sbjct: 246 LKPGEEVQVKVLSVDPERERISLSIK 271 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +I + V + G+V ++ DFGAFV +GLVHISQ+S + +A +DV++EG + Sbjct: 280 NIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIK 339 Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692 VK+L+ + ++ LS+K +++ Sbjct: 340 VKVLEVHPEERRLALSIKALEE 361 >gi|323142053|ref|ZP_08076901.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT 12067] gi|322413440|gb|EFY04311.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT 12067] Length = 163 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V + +FGAFV + GL+HIS++S V D +KE D V VK+L Sbjct: 4 EVGAIVEGEVTGITNFGAFVQLPEGKVGLIHISEVSNVYVKDVHDFLKEHDKVKVKVLSV 63 Query: 678 DDRGKIKLSMK 688 DDRGKI LS+K Sbjct: 64 DDRGKIGLSIK 74 >gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna BVS033A4] gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna BVS033A4] Length = 675 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+VV ++DFGAFV +GLVH+S++S E V K SD + GDTV VK+L+ + ++ Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613 Query: 681 GKIKLSMKVVDQNTGKP 697 +I LSMK + KP Sbjct: 614 KRIALSMKALLPKPEKP 630 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 6/111 (5%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMI--RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 +NID+ ++ S A +EA R+ I ++ ++ KI G+V ++ DFGAF+ G Sbjct: 432 LNIDEKKR-RLVLSHRAVVEAERKEIEDKAWENITVGEKI-TGKVQRLTDFGAFIDL-GG 488 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 DGL+HIS +S R+ DV+K GD + +L + ++ +I L +K + Q Sbjct: 489 VDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQLQQ 539 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%) Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +NKIY KG+V+ V D V+ DG++ + +LSTE D+ K+GD + V Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346 Query: 674 LLDFDD-RGKIKLSMKVVD 691 ++ DD G + LS K V+ Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365 >gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S ribosomal protein S1 [Finegoldia magna ATCC 29328] gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna ACS-171-V-Col3] gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein S1 [Finegoldia magna ATCC 29328] gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia magna ACS-171-V-Col3] Length = 675 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+VV ++DFGAFV +GLVH+S++S E V K SD + GDTV VK+L+ + ++ Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613 Query: 681 GKIKLSMKVVDQNTGKP 697 +I LSMK + KP Sbjct: 614 KRIALSMKALLPKPEKP 630 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+V ++ DFGAF+ G DGL+HIS +S R+ DV+K GD + +L + ++ +I Sbjct: 472 GKVQRLTDFGAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRI 530 Query: 684 KLSMKVVDQ 692 L +K + Q Sbjct: 531 SLGLKQLQQ 539 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%) Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +NKIY KG+V+ V D V+ DG++ + +LSTE D+ K+GD + V Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346 Query: 674 LLDFDD-RGKIKLSMKVVD 691 ++ DD G + LS K V+ Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365 >gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601] gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601] Length = 794 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ E + +G V V FGAFV +DGLVH+SQL+ + V +VVK G Sbjct: 661 EGVEEITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVQDAREVVKTG 719 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+L+ D RG+I LSMK+ Sbjct: 720 DIVKVKVLEVDVARGRISLSMKL 742 >gi|172057815|ref|YP_001814275.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990336|gb|ACB61258.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15] Length = 377 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++ +G V ++ DFGAFV G DGLVHIS+++ RV + SD+V EG V VK+L Sbjct: 185 EVGQVLEGTVQRLTDFGAFVDIGGV-DGLVHISEMAHHRVERPSDIVTEGQKVEVKVLGV 243 Query: 678 D-DRGKIKLSMK 688 D D K+KLS+K Sbjct: 244 DRDTEKVKLSIK 255 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I KG+V +++ FGAFV +GL+HISQ++ + S+V++EG + K+L+ Sbjct: 270 EAGDIVKGRVRRIVQFGAFVELAPQVEGLLHISQIANRHIGSPSEVLEEGQEIEAKVLEV 329 Query: 678 D-DRGKIKLSMKVVDQN 693 KI LS +V++Q Sbjct: 330 HLAEHKISLSTRVLEQE 346 >gi|331270412|ref|YP_004396904.1| RNA binding S1 domain-containing protein [Clostridium botulinum BKT015925] gi|329126962|gb|AEB76907.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925] Length = 722 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V D+VK GD V V++L+ D+ RG+I Sbjct: 657 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDVVEVRVLEVDEKRGRI 716 Query: 684 KLSMK 688 LSMK Sbjct: 717 SLSMK 721 >gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4] gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4] Length = 403 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E++ S+ + ++ G+V ++ +FGAFV G DGLVHIS++S ERV K SDV Sbjct: 191 EKRQEVLSSLQE----GEVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYERVEKPSDV 245 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 +K G+ V VK+L D +R +I LS+K Sbjct: 246 LKPGEEVQVKVLSVDPERERISLSIK 271 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +I + V + G+V ++ DFGAFV +GLVHISQ+S + +A +DV++EG + Sbjct: 280 NIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIK 339 Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692 VK+L+ + ++ LS+K +++ Sbjct: 340 VKVLEVHPEERRLALSIKALEE 361 >gi|260439486|ref|ZP_05793302.1| hypothetical protein NgonDG_00065 [Neisseria gonorrhoeae DGI2] gi|291042720|ref|ZP_06568461.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291013154|gb|EFE05120.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 757 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V DVVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRDVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|291287721|ref|YP_003504537.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus DSM 12809] gi|290884881|gb|ADD68581.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus DSM 12809] Length = 706 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V V+DFGAFV DGLVHISQL+ V+ S+VVK G TV K+L D +R Sbjct: 638 VLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADRFVSDPSEVVKVGQTVKTKVLSVDRER 697 Query: 681 GKIKLSMKV 689 G++ LSMKV Sbjct: 698 GRLSLSMKV 706 >gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4] Length = 299 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 +++ +G V ++ DFGAFV G DGLVHISQLS E V K +DVV EG V VK+L D Sbjct: 109 DQVLEGTVQRITDFGAFVDIGGV-DGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLSVDR 167 Query: 679 DRGKIKLSMK 688 D +I LS+K Sbjct: 168 DNERISLSIK 177 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 4/78 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 + +G+V +++ +GAF+ +GLVHISQLS + V +V++EG +V VK+LD +D Sbjct: 196 VLEGEVKRIVSYGAFIELFPGVEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDD 255 Query: 681 GKIKLSMKVVDQNTGKPI 698 ++ LS+K +++ KP+ Sbjct: 256 QRLSLSIKELEE---KPV 270 >gi|194099852|ref|YP_002002989.1| hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945] gi|239997870|ref|ZP_04717794.1| hypothetical protein Ngon3_00055 [Neisseria gonorrhoeae 35/02] gi|240116753|ref|ZP_04730815.1| hypothetical protein NgonPID1_11046 [Neisseria gonorrhoeae PID18] gi|268593716|ref|ZP_06127883.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268602424|ref|ZP_06136591.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18] gi|193935142|gb|ACF30966.1| Hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945] gi|268547105|gb|EEZ42523.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268586555|gb|EEZ51231.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18] gi|317165320|gb|ADV08861.1| hypothetical protein NGTW08_1906 [Neisseria gonorrhoeae TCDC-NG08107] Length = 757 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V DVVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRDVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|322515333|ref|ZP_08068330.1| YhgF like protein [Actinobacillus ureae ATCC 25976] gi|322118709|gb|EFX90921.1| YhgF like protein [Actinobacillus ureae ATCC 25976] Length = 779 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V + VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEEPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646] gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 22/250 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR+ + +R ++ + GS L GDT+ I T+ DE+ L G + Sbjct: 3 RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATV----DEKVPPFLRGKGQG 58 Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 Y+ LP AT + PS R + RL RA+ V+ A T+ + ++ Sbjct: 59 WVTAEYSMLPRATEIRNIRESLKPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVI 118 Query: 431 ESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDI 479 ++DG + A + G+ +AL+DA +P++ VA +++G+V DG+ + D+ Sbjct: 119 QADGGTRTAAITGAFVALVDAFKYLKDNGIIEVIPVNSFVAAVSVGIV-DGEKLL---DL 174 Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 + +ED +D V TD G + +Q + + + L A++G +++ +V Sbjct: 175 NFEEDCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQV 234 Query: 539 LSESRLQLGE 548 LS+ ++G+ Sbjct: 235 LSDVVDEVGK 244 >gi|296112015|ref|YP_003622397.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154] gi|295833547|gb|ADG41428.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154] Length = 395 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 256 TEKGRISLSIK 266 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 345 ERISLSMKALEE 356 >gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862] Length = 410 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 2/80 (2%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 ++ PE + +G V +V+DFGAFV +GLVH+SQ+S + +A SDV+K GD V VK Sbjct: 280 SEAPE-GTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVK 338 Query: 674 LLDFD-DRGKIKLSMKVVDQ 692 +L+ + D+ ++ LS+K +++ Sbjct: 339 VLEVNPDKQRLSLSIKALEE 358 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FGAF+ G DGLVH+S++S ERV++ SDV+ G+ V VK+L D Sbjct: 199 VGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLD 257 Query: 679 -DRGKIKLSMK 688 ++ +I LS+K Sbjct: 258 PEKERISLSIK 268 >gi|225077089|ref|ZP_03720288.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens NRL30031/H210] gi|224951646|gb|EEG32855.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens NRL30031/H210] Length = 761 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E IR I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 633 EGIREISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAG 691 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEPGG 720 >gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20] gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20] Length = 396 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 256 TEKGRISLSIK 266 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 345 ERISLSMKALEE 356 >gi|326474036|gb|EGD98045.1| ATP-dependent RNA helicase DHX8 [Trichophyton tonsurans CBS 112818] Length = 1214 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 ++G N DDD R + + D P + KIY G+V + DFG FV+ Sbjct: 219 RSGRNYNYDDD--------------FKRPPVSELDDRPILFKIYDGRVTGIKDFGVFVNL 264 Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G R DGLVH+S + RV SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323 >gi|150388634|ref|YP_001318683.1| RNA-binding S1 domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948496|gb|ABR47024.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF] Length = 728 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVH+SQLS + V DVV GD V VK++ D +RGK+ Sbjct: 661 GTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVKNPMDVVSVGDEVEVKIIGIDVERGKV 720 Query: 684 KLSMK 688 LSMK Sbjct: 721 SLSMK 725 >gi|108761556|ref|YP_629648.1| S1 RNA-binding domain-containing protein [Myxococcus xanthus DK 1622] gi|108465436|gb|ABF90621.1| S1 RNA binding domain protein [Myxococcus xanthus DK 1622] Length = 783 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 7/99 (7%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE +RS+ DV E + +G V V FGAFV +DGLVH+SQ+ST V S+VVK Sbjct: 631 REDLRSLEDVKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKV 689 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKPIV 699 GD + V++L D R ++ LS++ V Q +G+P V Sbjct: 690 GDRLTVRVLTVDLARKRLALSVRAVQEGGAPQPSGRPPV 728 >gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580] gi|52786169|ref|YP_091998.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580] gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2] gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis ATCC 14580] gi|52348671|gb|AAU41305.1| YpfD [Bacillus licheniformis ATCC 14580] gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2] Length = 382 Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E ++++ E ++ +G+V ++ DFGAFV G DGLVHISQLS V K SDV Sbjct: 176 ERKQEFLQTL----EAGQVLEGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDV 230 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 V+EG V VK+L D D +I LS+K Sbjct: 231 VEEGQDVKVKVLSVDRDNERISLSIK 256 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 + G+V +++ FGAFV +GLVHISQ+S + + +V++EG V VK+LD ++ Sbjct: 275 VLDGKVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEEE 334 Query: 681 GKIKLSMKVVDQNTGK 696 +I LSMK +++NT K Sbjct: 335 ERISLSMKELEENTDK 350 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVDIPNCKQTGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D + +K+ +D I LS + VD + Sbjct: 62 NVDDELELKVTKVEDDALI-LSKRAVDAD 89 >gi|115401346|ref|XP_001216261.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624] gi|114190202|gb|EAU31902.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624] Length = 1228 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 + D P + K+Y G+V V DFGAFV+ G + DGLVH+S + RV SD+V G Sbjct: 252 LDDQPILYKVYDGRVTGVKDFGAFVNLTGVKGKVDGLVHVSAMQEGVRVNHPSDLVSRGQ 311 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ ++ Sbjct: 312 PVKVKVVSIQG-SRIGLSMKEVDQATGRDLI 341 >gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115] gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115] Length = 576 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++G+VV++ DFG FV+ G DGLVH S+L+ R DVVK G+ V V++LD Sbjct: 235 EAGAQFEGEVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPRDVVKVGEKVQVQVLDV 293 Query: 678 DD-RGKIKLSMKVVDQN 693 DD R +I LSMK + Q+ Sbjct: 294 DDGRERINLSMKALTQD 310 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 KG++ + DFG F+ +GL+HIS+L T+RV +D+ K+GD + +L+ D Sbjct: 413 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 467 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 14/127 (11%) Query: 578 VEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633 V + G KV + DDG +I S A + E T+ + + G+V + +F Sbjct: 279 VVKVGEKVQVQVLDVDDGRERINLSMKALTQDPWE---GATERYSIGQKVNGKVTNLTNF 335 Query: 634 GAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DRGKIKLSMKVV 690 GAFV +GLVH+S++S T+RV ++V+KEGD V +L D DR +I L ++ Sbjct: 336 GAFVELESGLEGLVHVSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPKDR-RISLGIR-- 392 Query: 691 DQNTGKP 697 Q T P Sbjct: 393 -QTTDDP 398 >gi|328949606|ref|YP_004366941.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM 14884] gi|328449930|gb|AEB10831.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM 14884] Length = 123 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G+V ++MDFGAFV GLVHIS+++ E V D + EG TV V +L Sbjct: 4 EAGSIVEGRVTRIMDFGAFVELPNGESGLVHISEIAHEFVKNVHDYLTEGQTVQVFVLGR 63 Query: 678 DDRGKIKLSMK 688 D +G++ LS+K Sbjct: 64 DHKGRLDLSIK 74 >gi|218885973|ref|YP_002435294.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756927|gb|ACL07826.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 756 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S D+ E + G V V FGAFV RDGLVH+SQLS V ++VV G Sbjct: 671 EGVHSPDDL-EPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPG 729 Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693 TV V++L+ D RG++ L+MK VDQ Sbjct: 730 RTVRVRVLEVDRARGRVSLTMKGVDQQ 756 >gi|118443081|ref|YP_878976.1| S1 RNA-binding domain-containing protein [Clostridium novyi NT] gi|118133537|gb|ABK60581.1| S1 RNA binding domain protein [Clostridium novyi NT] Length = 718 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V D+VK GD V V++L+ D+ RG+I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKRGRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|269792637|ref|YP_003317541.1| RNA binding S1 domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100272|gb|ACZ19259.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 504 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684 +VV++ DFGAFV +GL+HISQLS +RV K SDV++EG V K+L+ + +I+ Sbjct: 387 KVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRIR 446 Query: 685 LSMKVVDQNTG 695 LS++ +++ TG Sbjct: 447 LSLRALEEPTG 457 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 SL+ +A + +T V + KG V + DFGAFV +GL+HI LS RV Sbjct: 275 SLSLKQAQEDPWVGVTSRWTVGQRTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSRVK 334 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +V+K+G V V +L+ D DR +I L +K Sbjct: 335 HPKEVLKKGQEVEVVILEVDGDRRRIGLGLK 365 >gi|319651364|ref|ZP_08005493.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2] gi|317396895|gb|EFV77604.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2] Length = 379 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 + ++ G V ++ DFGAFV G DGLVHISQLS E V K SDVV+EG V VK+L Sbjct: 186 QAGQVLDGTVQRITDFGAFVDIGGI-DGLVHISQLSYEHVEKPSDVVEEGQKVKVKVLSV 244 Query: 678 D-DRGKIKLSMK 688 D D +I LS+K Sbjct: 245 DRDNERISLSIK 256 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V +++ +GAFV +GLVHISQ++ + + +V+ EG + VK+LD +++ + Sbjct: 277 EGTVKRLVSYGAFVEVFPGVEGLVHISQIAHKHIGTPHEVLSEGQEIKVKVLDVNEQDQ- 335 Query: 684 KLSMKVVD 691 +LS+ + D Sbjct: 336 RLSLSIKD 343 >gi|41054559|ref|NP_956838.1| nucleolar protein of 40 kDa [Danio rerio] gi|33604160|gb|AAH56336.1| Zinc finger, CCHC domain containing 17 [Danio rerio] Length = 235 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 4/85 (4%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +P + I KG+VV V +GAFV G R GLVH S++S RV +++V G+ VW+K+ Sbjct: 15 LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 74 Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696 + DD+ K+ SM V+Q TG+ Sbjct: 75 IGKEMKDDKVKLSFSMNSVNQGTGR 99 >gi|222152148|ref|YP_002561308.1| hypothetical protein MCCL_1905 [Macrococcus caseolyticus JCSC5402] gi|222121277|dbj|BAH18612.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 128 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 47/82 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V V +FGAFV + GLVHIS+++ V +D +K GD V VK+L Sbjct: 4 EVGSKLKGKVTGVKNFGAFVELPEGKSGLVHISEVADSYVENVADHLKVGDEVEVKVLTI 63 Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699 D GKI LS+K + KP+ Sbjct: 64 GDDGKISLSIKKAKERPKKPVA 85 >gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1] gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1] Length = 237 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 28/244 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R RD++ +R ++ + G+ + GS L GDT + +L +E+ L G QR Sbjct: 1 MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQQR 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP ATGE R A ++ G RL R++ V+ A Y + + Sbjct: 57 GWVTAEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDC 116 Query: 428 EITESDGSSSMATVCGSSLALMD------AGVPISKP-----VAGIAMGLVKDGD--DFI 474 ++ ++DG + A++ G+ +AL D A ++KP VA I+ G+ K D Sbjct: 117 DVIQADGGTRTASITGAWVALRDCIEWMRARDMVTKPVLKDHVAAISCGIYKGTPVLDLD 176 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR--GRLHIL 532 + D + + D +F + GT GI +Q + +E+ L AK+ GRL L Sbjct: 177 YVEDSAAETD----ANFVLTGT-GGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDL 231 Query: 533 NEMS 536 +MS Sbjct: 232 QKMS 235 >gi|189241238|ref|XP_972602.2| PREDICTED: similar to CG8241 CG8241-PA [Tribolium castaneum] Length = 1247 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 P KIY G+V ++ FG FV G R +GLVHISQL E RV S+VV G V + Sbjct: 291 PIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTNVSEVVSRGMKVKI 350 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L + K+ LSMK VDQ TGK Sbjct: 351 KVLSVTGQ-KVSLSMKDVDQITGK 373 >gi|157692789|ref|YP_001487251.1| 30S ribosomal protein S1 [Bacillus pumilus SAFR-032] gi|157681547|gb|ABV62691.1| ribosomal protein S1 [Bacillus pumilus SAFR-032] Length = 383 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ DFGAFV G DGLVHISQLS V K SDVV+EG V VK+L Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAV 244 Query: 678 D-DRGKIKLSMK 688 D D +I LS+K Sbjct: 245 DRDNERISLSIK 256 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 + +G V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD +D Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDE 334 Query: 681 GKIKLSMKVVDQNTGKPI 698 +I LS++ +++N K I Sbjct: 335 ERISLSIRDLEENPEKQI 352 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVD 691 K+GD + +K+ +D I LS + VD Sbjct: 62 KDGDELELKVTKVEDDALI-LSKRAVD 87 >gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa] gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa] Length = 247 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 9/228 (3%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ + R DGR +R+++ ++G+ + GS+ +G+T+ + V G E +Q Sbjct: 2 NIISEHGYRQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 L R Y+ +T E RR + RL +A + T +P + + Sbjct: 61 LLE--DRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAV-LTENYPRSQI 117 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DGS A V +LAL DAGVP+ VA + +G + D++ E Sbjct: 118 DVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNG---VACVDVNSRE 174 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +G + T SG A+ + + +N +++ L+ A+R H+ Sbjct: 175 E-MGIIPRLTVATISGQDAVVLAELQNRLHKNYLIVILEAARRATAHV 221 >gi|240274879|gb|EER38394.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H143] Length = 1210 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 234 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 293 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK++ ++ LSMK VDQ TG+ Sbjct: 294 PVKVKVITIQG-SRVGLSMKEVDQGTGR 320 >gi|270013243|gb|EFA09691.1| hypothetical protein TcasGA2_TC011820 [Tribolium castaneum] Length = 1181 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672 P KIY G+V ++ FG FV G R +GLVHISQL E RV S+VV G V + Sbjct: 225 PIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTNVSEVVSRGMKVKI 284 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K+L + K+ LSMK VDQ TGK Sbjct: 285 KVLSVTGQ-KVSLSMKDVDQITGK 307 >gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773] gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human Length = 396 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 255 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 256 TEKGRISLSIK 266 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 345 ERISLSMKALEE 356 >gi|330877229|gb|EGH11378.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 71 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 8 EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66 + ++ + LETGRIARQ+ GAVL T + V VL TVV + G+ FFPL+V+YQE+ Sbjct: 7 KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66 Query: 67 TYAVG 71 TYA G Sbjct: 67 TYAAG 71 >gi|77410282|ref|ZP_00786723.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae COH1] gi|77171109|gb|EAO74537.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae COH1] Length = 182 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 94/179 (52%), Gaps = 7/179 (3%) Query: 156 YINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214 Y++G +++NP E + S L+L V+GT++A+ MVE A +LSE+++L+A++ GH + Sbjct: 2 YVDGNFIINPTAQEQEASALELTVAGTKEAINMVESGAKELSEEIMLEALLKGHEAVCEL 61 Query: 215 IEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273 I ++ KE ++ +L+ E+ L+ + + EK R + +K+ Sbjct: 62 IAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQVEEKKAREAATEAVKE 121 Query: 274 KMVSYFS---SEHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327 ++ + +EH ++ ++ + E ++ VR ++ + K R DGR + +R + A Sbjct: 122 VVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKGRPDGRRVDEIRPLDA 180 >gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog [Homo sapiens] Length = 406 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 207 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 265 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 266 TEKGRISLSIK 276 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 295 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 354 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 355 ERISLSMKALEE 366 >gi|296085833|emb|CBI31157.3| unnamed protein product [Vitis vinifera] Length = 803 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +D PE+ +YKG+V +VMD G FV ++GLVH+SQ++T RV DVVK V+ Sbjct: 164 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 223 Query: 672 VKLLDFDDRGKIKLSMK 688 VK++ + K+ LSM+ Sbjct: 224 VKVISVSGQ-KLSLSMR 239 >gi|194016705|ref|ZP_03055318.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC 7061] gi|194011311|gb|EDW20880.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC 7061] Length = 383 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ DFGAFV G DGLVHISQLS V K SDVV+EG V VK+L Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAV 244 Query: 678 D-DRGKIKLSMK 688 D D +I LS+K Sbjct: 245 DRDNERISLSIK 256 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 + +G V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD +D Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDE 334 Query: 681 GKIKLSMKVVDQNTGKPI 698 +I LS++ +++N K I Sbjct: 335 ERISLSIRDLEENPEKQI 352 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVD 691 K+GD + +K+ +D I LS + VD Sbjct: 62 KDGDELELKVTKVEDDALI-LSKRAVD 87 >gi|255954649|ref|XP_002568077.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589788|emb|CAP95939.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1231 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G V V DFGAFV+ G R DGLVH+S + RV SD+V G Sbjct: 255 LDDHPVLFKIYDGTVTGVKDFGAFVNLKGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK+ D +I LSMK VDQ TG +V Sbjct: 315 PVKVKVASIDG-TRIGLSMKEVDQVTGMDLV 344 >gi|310659084|ref|YP_003936805.1| polyribonucleotide nucleotidyltransferase [Clostridium sticklandii DSM 519] gi|308825862|emb|CBH21900.1| Polyribonucleotide nucleotidyltransferase (General stress protein 13) [Clostridium sticklandii] Length = 144 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+VV++ FGAF+ + GLVHISQ+S + + + +D + EGDTV VK++ Sbjct: 6 EVGMIVEGKVVQLKPFGAFISLADNKRGLVHISQISHDYIKEVNDALSEGDTVKVKIISI 65 Query: 678 D-DRGKIKLSMK 688 + D GKI LS+K Sbjct: 66 EPDSGKISLSIK 77 >gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98] Length = 382 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 6/83 (7%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I S+ + +I +G V ++ DFGAFV+ G DGLVHISQ+S ERV + SDV+++ Sbjct: 180 KEAISSLKE----GEIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISHERVGQPSDVLEQ 234 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G V VK+L D D +I LS+K Sbjct: 235 GQKVKVKVLSVDADTQRISLSIK 257 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + D +V + +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V V Sbjct: 267 VADEIKVGDVREGTVNRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326 Query: 673 KLLDFDDRGK-IKLSMK 688 K+L+ + K I LS+K Sbjct: 327 KVLEVNAAEKRISLSIK 343 >gi|160946420|ref|ZP_02093629.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270] gi|158447536|gb|EDP24531.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270] Length = 697 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R + SI D+ EV KG V V+DFGAFV DGLVHISQ+S + + S+V+K Sbjct: 616 RSDVLSIEDL-EVGMELKGTVRNVVDFGAFVDIGIKNDGLVHISQISNKYIKHPSEVLKV 674 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 D V VK+L+ D ++ K+KL+MK Sbjct: 675 SDVVKVKILEIDLEKQKVKLTMK 697 >gi|240146046|ref|ZP_04744647.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|257201862|gb|EEV00147.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia intestinalis L1-82] gi|291539046|emb|CBL12157.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4] Length = 374 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG+V ++ DFGAFV D L+H+SQ++ E + K SDV+K G + K++DF+ Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQIAKEHIEKPSDVLKVGQEIEAKIVDFN 335 Query: 679 -DRGKIKLSMKVV 690 D KI LS+K + Sbjct: 336 EDEKKISLSIKAL 348 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 6/92 (6%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++E +E+ I +V + +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 180 KLEQQKELFAKI----KVGDVMEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPK 234 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + D +D KI LSMK +N Sbjct: 235 KVFNVGDHVRVFIKDINDT-KIALSMKFPAEN 265 >gi|327299420|ref|XP_003234403.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892] gi|326463297|gb|EGD88750.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892] Length = 1214 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 ++G N DDD AS + D P + KIY G+V + DFG FV+ Sbjct: 219 RSGRNYNYDDDLKRPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264 Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G R DGLVH+S + RV SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKIVSIQD-SRIGLSMKEVDQVSG 323 >gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] Length = 242 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 17/220 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369 R+DGR +R + +VG++ R GS+LF G+T+ I V G RE + Q V+S Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSNEAL 69 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 R ++ M F +TG+ R RR + R+ + + + I ++ Sbjct: 70 VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYLEDSAGGS 181 Query: 490 DFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525 D V A D +T +QMD K+ EN+M +A++ K Sbjct: 182 DVTVGILAKMDK-VTLLQMDAKLPMDTFENVMGLAIEGCK 220 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 23/220 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68 R LK E G +AR +DG+ L G T V+A V R +++ GQ VN E Y Sbjct: 21 RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSNEALVRCEY 74 Query: 69 AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + + G RR + R TE ++I + ++ SI L +++ + + V+Q D + Sbjct: 75 RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPRSQIDIYVQVLQADGGT 132 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181 ++ AA+ AL +G+P V Y+ +L+ ED G D+ V Sbjct: 133 RSACIN--AATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221 D V +++++A +L D + + CK + I ++ Sbjct: 191 MDKVTLLQMDA-KLPMDTFENVMGLAIEGCKAIATYIREV 229 >gi|254426874|ref|ZP_05040581.1| S1 RNA binding domain protein [Alcanivorax sp. DG881] gi|196193043|gb|EDX88002.1| S1 RNA binding domain protein [Alcanivorax sp. DG881] Length = 791 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 21/154 (13%) Query: 563 IRNVIGMGGKVIRGIV------EQTGAKVNIDDDGTVKIASSSLAEIE------------ 604 + + G G+ ++ +V ++ A DD+ + + L+E+E Sbjct: 575 VEKIAGKHGRPLKDLVGDVPFLKKVNAAEFTDDNFGLPTVTDILSELEKPGRDPRPEFKA 634 Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A +E + ++ D+ + + I +G V V +FGAFV +DGLVH+S L+ + V V Sbjct: 635 AALKEGVETLKDLKQ-SMILEGTVTNVTNFGAFVDIGVHQDGLVHVSALADKFVEDPHQV 693 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V GD V VK+LD D DR +I L+M++ DQ T K Sbjct: 694 VAPGDIVKVKVLDVDLDRKRISLTMRMDDQPTEK 727 >gi|1098565|gb|AAA97575.1| ribosomal S1 protein [Homo sapiens] Length = 352 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 153 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 211 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 212 TEKGRISLSIK 222 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 241 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 300 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 301 ERISLSMKALEE 312 >gi|302655083|ref|XP_003019336.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517] gi|291183052|gb|EFE38691.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517] Length = 1210 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 ++G N DDD AS + D P + KIY G+V + DFG FV+ Sbjct: 219 RSGRNYNYDDDFKRPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264 Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G R DGLVH+S + RV SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323 >gi|157676008|emb|CAP07845.1| putative transcriptional accessory protein [Neisseria sicca ATCC 29256] Length = 757 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ +G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPSG 716 >gi|302495909|ref|XP_003009968.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371] gi|291173490|gb|EFE29323.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371] Length = 1214 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 ++G N DDD AS + D P + KIY G+V + DFG FV+ Sbjct: 219 RSGRNYNYDDDFKKPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264 Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G R DGLVH+S + RV SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323 >gi|311693107|gb|ADP95980.1| transcriptional accessory protein [marine bacterium HP15] Length = 779 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 5/83 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS V +VVK GD V VK++D D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVKVKVMDVDIPR 712 Query: 681 GKIKLSMKVVDQ----NTGKPIV 699 +I L+M++ DQ N GKP+ Sbjct: 713 KRIALTMRMDDQPGEKNEGKPMA 735 >gi|328948657|ref|YP_004365994.1| Cytidylate kinase [Treponema succinifaciens DSM 2489] gi|328448981|gb|AEB14697.1| Cytidylate kinase [Treponema succinifaciens DSM 2489] Length = 781 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN I KG+V KV DFGAF+ +GL HIS+ S T+++ K SD+VKEGD V +L + Sbjct: 499 VNDIVKGKVTKVPDFGAFIELEEGIEGLAHISEFSWTKKINKPSDMVKEGDEVECMILGY 558 Query: 678 DDR-GKIKLSMKVVDQN 693 D + G++ L +K V +N Sbjct: 559 DIQGGRVSLGLKQVTEN 575 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682 KG V FGAF+ G DGL+HI+ +S V + D VK+G + +K++ D GK Sbjct: 419 KGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIELKVIRLDPEGKR 477 Query: 683 IKLSMK 688 I LS+K Sbjct: 478 INLSLK 483 >gi|317131356|ref|YP_004090670.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3] gi|315469335|gb|ADU25939.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3] Length = 143 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 46/74 (62%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V + FGAFV G + G+VHIS+++ V + D V+E TV VK+L Sbjct: 4 EVGAVLEGKVTGITKFGAFVELPGGKTGMVHISEVAPTFVKEIRDFVQENQTVKVKVLAI 63 Query: 678 DDRGKIKLSMKVVD 691 D GK+ LSMK V+ Sbjct: 64 TDDGKVSLSMKRVE 77 >gi|212533317|ref|XP_002146815.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium marneffei ATCC 18224] gi|210072179|gb|EEA26268.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium marneffei ATCC 18224] Length = 1227 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 I D P + K Y G+V V DFGAFV+ G R DGLVH+S + RV SD+V G Sbjct: 252 IDDQPVLYKTYDGRVTGVKDFGAFVNLQGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 311 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG+ ++ Sbjct: 312 LVKVKVVSIQG-TRIGLSMKEVDQVTGRDLI 341 >gi|253578799|ref|ZP_04856070.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849742|gb|EES77701.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 358 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG+V ++ DFGAFV D L+H+SQ+S E VAK SDV+ G + K++DF+ Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFN 335 Query: 679 -DRGKIKLSMK 688 + KI LSMK Sbjct: 336 GEDKKISLSMK 346 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 LAE E +E++ I V +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 177 LAEKAEKQKELMEKI----HVGDTVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + + + KI LS+K + N Sbjct: 232 NPKKVFTVGDKVKVLIKEINGE-KIALSLKFPEAN 265 >gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group] gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group] Length = 242 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 19/240 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369 R+DGR +R + +VG++ R GS+LF G+T+ I V G RE + Q V+S Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKDAL 69 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 R ++ M +F +TG+ R RR + R+ + + + I ++ Sbjct: 70 VRCEYRMA-DF---STGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489 ++DG + A + ++LAL DAG+P+ V + G + L D++ ED G Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYIEDSAGGP 181 Query: 490 DFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546 D V +T +QMD K+ E +M +A++ K I N + +VL E+ +L Sbjct: 182 DVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCK----AIANYIREVLLENTRRL 237 Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 29/223 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68 R LK E G +AR +DG+ L G T V+A V R +++ GQ VN ++ Y Sbjct: 21 RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSKDALVRCEY 74 Query: 69 AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + G RR + R TE ++I + ++ SI L +++ + + V+Q D Sbjct: 75 RMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPRSQIDIFVQVLQAD--G 130 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181 + AA+ AL +G+P V Y+ +L+ ED G D+ V Sbjct: 131 GTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGPDVTVGFLTK 190 Query: 182 QDAVLMVELEANQLSED---VVLDAIIFGHNECKPVIEAISKL 221 D V +++++A +L D V+D I G CK + I ++ Sbjct: 191 MDKVTLLQMDA-KLPMDTFETVMDLAIEG---CKAIANYIREV 229 >gi|323489677|ref|ZP_08094904.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis MPA1U2] gi|323396808|gb|EGA89627.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis MPA1U2] Length = 381 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/66 (57%), Positives = 44/66 (66%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G DGLVHISQLS E V K SDVV EG V VK+L D D + Sbjct: 192 KGKVQRIASFGAFVDIGGV-DGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSER 250 Query: 683 IKLSMK 688 I LS+K Sbjct: 251 ISLSIK 256 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 ++ G V +++ +GAFV +GLVHISQ++ + +A S+V+ EG+ V VK+L+ + Sbjct: 275 VHTGTVKRLVSYGAFVEVLPGVEGLVHISQIAHKHIATPSEVLTEGEKVEVKILEVNKAD 334 Query: 682 K-IKLSMKVVDQNTGK 696 K + LS+K + + G+ Sbjct: 335 KRLSLSIKELQEKQGE 350 >gi|307250521|ref|ZP_07532466.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857463|gb|EFM89574.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|307257325|ref|ZP_07539095.1| hypothetical protein appser10_13230 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864175|gb|EFM96088.1| hypothetical protein appser10_13230 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|291522293|emb|CBK80586.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Coprococcus catus GD/7] Length = 637 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ DFGAFV D L+H+SQ+S + V K SDV+ G T+ K++DF+ Sbjct: 557 VGNVVEGKVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSYGQTITAKVVDFN 616 Query: 679 DRG-KIKLSMKVVD 691 + KI LSMK +D Sbjct: 617 EESQKISLSMKALD 630 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G+V V DFGAF+ GA DGL+HIS++S RV V+K GDT+ V + D KI Sbjct: 479 EGRVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVLKVGDTLKVLIKDIQGE-KI 536 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 537 ALSLKFPETN 546 >gi|60729648|pir||JC7997 nucleolar protein, pNO40, short form - human Length = 217 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685 V D+GAF+ G R GLV + +S+ RV K S++V GD VWVKL+ +DR K+ L Sbjct: 2 VTDYGAFIKIPGCRKQGLVRRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61 Query: 686 SMKVVDQNTGK 696 SMKVV+Q TGK Sbjct: 62 SMKVVNQGTGK 72 >gi|307246188|ref|ZP_07528270.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255169|ref|ZP_07536987.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259606|ref|ZP_07541331.1| hypothetical protein appser11_14050 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853123|gb|EFM85346.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862042|gb|EFM94018.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866542|gb|EFM98405.1| hypothetical protein appser11_14050 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|251779026|ref|ZP_04821946.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083341|gb|EES49231.1| putative 30S ribosomal protein S1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 378 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I+ G+VVK FGAFV +GLVHIS+++ E +AK SDV++ V VK+LDF+ G Sbjct: 280 IFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLELNQKVKVKVLDFNKEG 339 Query: 682 KIKLSMKVVD 691 K +LS+ + D Sbjct: 340 K-RLSLSIKD 348 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +AS E E + + I D + + G V K++ +GAFV G +GL+HIS LS Sbjct: 168 VASRKAIENEEYEKNRKVIWDSLKEGEKRTGIVKKLVKYGAFVDIGGV-EGLIHISDLSW 226 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RV + ++VKE D V V + DR KLS+ + D N Sbjct: 227 NRVNRPEEIVKENDKVEVYIGSV-DRENQKLSLVLKDIN 264 >gi|320449448|ref|YP_004201544.1| S1 domain-containing protein [Thermus scotoductus SA-01] gi|320149617|gb|ADW20995.1| S1 domain protein [Thermus scotoductus SA-01] Length = 125 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + +G+VV+V DFGAFV G GLVHISQ++ E V D + EGD V V + Sbjct: 4 EAGSVVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMVKGR 63 Query: 678 DDRGKIKLSMK 688 D +G++ LS+K Sbjct: 64 DAKGRLDLSIK 74 >gi|313212412|emb|CBY36394.1| unnamed protein product [Oikopleura dioica] Length = 1041 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P+V KIY G+V + FG F+ G +GL HIS+L +ERV + SDVV V VK Sbjct: 228 PQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVARFQQVKVK 287 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L F + LSMK VDQ TG+ Sbjct: 288 VLSFSG-TRTSLSMKDVDQATGE 309 >gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] gi|149833208|gb|EDM88290.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174] Length = 359 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E VAK SDV+ G + K++DF+ Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGIDALLHVSQISKEHVAKPSDVLSIGQEIQAKVVDFN 335 Query: 679 -DRGKIKLSMK 688 D KI LSMK Sbjct: 336 GDDKKISLSMK 346 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 LAE E +E++ I V G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 177 LAEKAEKQKELMEKI----HVGDTVTGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + + + KI LSMK ++N Sbjct: 232 NPKKVFNVGDEVRVLIKEING-DKIALSMKFPEEN 265 >gi|165976690|ref|YP_001652283.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876791|gb|ABY69839.1| predicted transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|188589736|ref|YP_001919939.1| 30S ribosomal protein S1 [Clostridium botulinum E3 str. Alaska E43] gi|188500017|gb|ACD53153.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E3 str. Alaska E43] Length = 378 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I+ G+VVK FGAFV +GLVHIS+++ E +AK SDV++ V VK+LDF+ G Sbjct: 280 IFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLELNQKVKVKVLDFNKEG 339 Query: 682 KIKLSMKVVD 691 K +LS+ + D Sbjct: 340 K-RLSLSIKD 348 Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 +AS E E + + I D + + G V K++ +GAFV G +GL+HIS LS Sbjct: 168 VASRKAIENEEYEKNRKVIWDSLKEGEKRTGVVKKLVKYGAFVDIGGV-EGLIHISDLSW 226 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RV + ++VKE D V V + DR KLS+ + D N Sbjct: 227 NRVNRPEEIVKENDKVEVYIGSV-DRENQKLSLVLKDIN 264 >gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays] gi|194692034|gb|ACF80101.1| unknown [Zea mays] Length = 242 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369 R+DGR +R + +VG++ R GS+LF G+T+ I V G RE + Q V+S Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKEAL 69 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428 R ++ M F +TG+ R RR + R+ + + T P++ + I + Sbjct: 70 VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++DG + A + ++LAL DAG+P+ + G + L D++ ED G Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCS----TPLLDLNYLEDSAGG 180 Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525 D V A D +T +QMD K+ EN+M +A++ K Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPIDTFENVMGLAIEGCK 220 Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 23/220 (10%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68 R LK E G +AR +DG+ L G T V+A V R +++ GQ VN +E Y Sbjct: 21 RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSKEALVRCEY 74 Query: 69 AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124 + + G RR + R TE ++I + ++ SI L ++ + + V+Q D + Sbjct: 75 RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPHSQIDIYVQVLQADGGT 132 Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181 ++ AA+ AL +G+P Y+ +L+ ED G D+ V Sbjct: 133 RSACIN--AATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190 Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221 D V +++++A +L D + + CK + I ++ Sbjct: 191 MDKVTLLQMDA-KLPIDTFENVMGLAIEGCKAIATYIREV 229 >gi|307261748|ref|ZP_07543414.1| hypothetical protein appser12_13070 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868566|gb|EFN00377.1| hypothetical protein appser12_13070 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|190150591|ref|YP_001969116.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263935|ref|ZP_07545539.1| hypothetical protein appser13_13440 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915722|gb|ACE61974.1| predicted transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870800|gb|EFN02540.1| hypothetical protein appser13_13440 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|126208738|ref|YP_001053963.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae L20] gi|126097530|gb|ABN74358.1| predicted transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|238506893|ref|XP_002384648.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus flavus NRRL3357] gi|220689361|gb|EED45712.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus flavus NRRL3357] Length = 1229 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + K+Y G+V V DFGAFV+ G + DGLVH+S + RV SD+V G Sbjct: 253 LDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 312 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V VK++ +I LSMK VDQ TG Sbjct: 313 PVKVKVISIQG-SRIGLSMKEVDQVTG 338 >gi|160934311|ref|ZP_02081698.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753] gi|156866984|gb|EDO60356.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753] Length = 686 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +++ + E+ K+Y G V + +GAFV G DG+VHIS+LS R+ S++V Sbjct: 474 KKLAEKFWETAEIGKVYTGTVKSLTSYGAFVDL-GGIDGMVHISELSWSRIKHPSEIVNV 532 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 GDTV V + D D ++GKI L K + N Sbjct: 533 GDTVEVYIKDLDPEKGKISLGYKKTEDN 560 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 45/200 (22%) Query: 523 QAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581 + RGR + + VL + R +L E F EI + ++++ G V G + Sbjct: 453 EVNRGRRRAVGSIRSVLKDERKKLAEKFWETAEIGKVYTGTVKSLTSYGAFVDLGGI--- 509 Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR-------SITDV-PEVNKIYKG-------- 625 DG V I+ S + I+ E++ I D+ PE KI G Sbjct: 510 --------DGMVHISELSWSRIKHPSEIVNVGDTVEVYIKDLDPEKGKISLGYKKTEDNP 561 Query: 626 -QVVK---------------VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 +++K + FGAF DGL+HISQ++ R+ K DV+ GD Sbjct: 562 WEILKRDYPVGSVVEVTVVGMTTFGAFARILPGIDGLIHISQIADHRIEKPQDVLAIGDV 621 Query: 670 VWVKLLDFD-DRGKIKLSMK 688 V V + D D D+ +I LS++ Sbjct: 622 VKVAITDIDFDKKRISLSIR 641 >gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 692 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 VE +NI DD VKI SL + + T+ EV + G+VV + Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNL 561 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 +DFGAFV +GL+H+S++S E V K SD + GD V VK+L D + KI LS+K Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKA 621 Query: 690 VDQ 692 + + Sbjct: 622 LKE 624 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D E ++ G+V ++ DFGAFV G+ DGL+H+S ++ RV DV+ GD + VK+ Sbjct: 461 DELEEGQVITGKVARLTDFGAFVEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519 Query: 675 LDFD-DRGKIKLSMK 688 L + ++ +I L K Sbjct: 520 LKLNKEKNRISLGRK 534 >gi|303250647|ref|ZP_07336844.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252904|ref|ZP_07534793.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650635|gb|EFL80794.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859693|gb|EFM91717.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 779 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+L+ D R +I L+M++ D+ T KP Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736 >gi|6175044|sp|P50889|RS1_LEULA RecName: Full=40S ribosomal protein S1 gi|1565296|gb|AAB08978.1| ribosomal protein S1 homolog; sequence specific DNA-binding protein [Leuconostoc lactis] Length = 429 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAFV G DGLVH+S++S +RV +DV+ +GD V VK+L D Sbjct: 230 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 288 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 289 TEKGRISLSIK 299 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GLVH+SQ+S +R+ S+V+K GD V VK+LD Sbjct: 318 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 377 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 378 ERISLSMKALEE 389 >gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] Length = 241 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 15/233 (6%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR +R + +VG+L GS+ G T+ +V G RE + + R Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTE-VVAAVYGPREPP--MRGMVLPDRA 71 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSEITE 431 Y+ P +T E + APSRREI ++ R A+ + T FP T+ + E+ Sbjct: 72 VIRCRYHMAPFSTDE-RKNPAPSRREIELSKVIREALEATI-LTHLFPRTIIDVFIEVIR 129 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491 +DG + A + +SLAL DAG+P+ VAG+A+G V+ ++ DI ED G D Sbjct: 130 ADGGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQG----TLVLDIDELEDMYGEADM 185 Query: 492 KVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 VA S I +Q++ G + AL+ A G I KVL+E Sbjct: 186 PVAAIPSLNKIVLLQLN---GVLEPREFPQALKLAWEGIKKIHAMQKKVLAEK 235 >gi|169785967|ref|XP_001827444.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Aspergillus oryzae RIB40] gi|83776192|dbj|BAE66311.1| unnamed protein product [Aspergillus oryzae] Length = 1229 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + K+Y G+V V DFGAFV+ G + DGLVH+S + RV SD+V G Sbjct: 253 LDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 312 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V VK++ +I LSMK VDQ TG Sbjct: 313 PVKVKVISIQG-SRIGLSMKEVDQVTG 338 >gi|313230404|emb|CBY18619.1| unnamed protein product [Oikopleura dioica] Length = 1187 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P+V KIY G+V + FG F+ G +GL HIS+L +ERV + SDVV V VK Sbjct: 228 PQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVARFQQVKVK 287 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L F + LSMK VDQ TG+ Sbjct: 288 VLSFSG-TRTSLSMKDVDQATGE 309 >gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565] gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565] Length = 785 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + I+D VPE+ + +G V V +FGAFV +DGLVHIS L+ V +VVK Sbjct: 652 KEGVEQISDLVPEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVK 709 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+L+ D R +I L+M+ +D+ G+P Sbjct: 710 AGDIVRVKVLEVDAPRKRISLTMR-LDEKAGQP 741 >gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM 7454] gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM 7454] Length = 692 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 VE +NI DD VKI SL + + T+ EV + G+VV + Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNL 561 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 +DFGAFV +GL+H+S++S E V K SD + GD V VK+L D + KI LS+K Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKA 621 Query: 690 VDQ 692 + + Sbjct: 622 LKE 624 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D E ++ G+V ++ DFGAFV G+ DGL+H+S ++ RV DV+ GD + VK+ Sbjct: 461 DELEEGQVITGKVARLTDFGAFVEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519 Query: 675 LDFD-DRGKIKLSMK 688 L + ++ +I L K Sbjct: 520 LKLNKEKNRISLGRK 534 >gi|225374882|ref|ZP_03752103.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] gi|225213265|gb|EEG95619.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM 16841] Length = 365 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 43/196 (21%) Query: 528 RLHILNEMSKVLSESRL-QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R I+ + ++L E +L Q E ++++ + ++NV G + G GA Sbjct: 165 RRRIIGDRKQLLVEKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAFIDLG-----GA--- 216 Query: 587 IDDDGTVKIASSSLAEIEAAREM----------IRSITDVP------------------- 617 DG + I+ S +E+ +++ I+ I D Sbjct: 217 ---DGLLHISEMSWGRVESPKKVFNVGDTVKVFIKDINDTKIALSMKFPSENPWNGAAEK 273 Query: 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 V I KG+V ++ DFGAFV D L+H+SQ+S + V K +DV+K G + K++D Sbjct: 274 FAVGNIVKGKVARMTDFGAFVELAPGVDALLHVSQISKDHVEKPADVLKIGQEIEAKVVD 333 Query: 677 FD-DRGKIKLSMKVVD 691 F+ D KI LS+K ++ Sbjct: 334 FNEDDKKISLSIKALE 349 >gi|2330910|gb|AAC45837.1| similar to Bordetella pertussis toxin accessory protein encoded by GenBank Accession Number X95386 [Neisseria gonorrhoeae] Length = 265 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 137 EGIHEISDL-QVGMILEGLVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 195 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 196 DVVKVKVLEVDAARKRIALTMRLDDEPGG 224 >gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664] gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664] Length = 401 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FGAF+ G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRNRISLSIK 266 >gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4] gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4_'5-way FS'] Length = 235 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 116/239 (48%), Gaps = 21/239 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R D R + +R + A+ G++ GS+ F G+T+AI V ++++ ++ + Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVN---KG 61 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--VLPQTAQFPYTLRIVSEIT 430 + Y+ LP + + +R G RR+I ++ A++ +L + + +RI IT Sbjct: 62 IIVCKYDMLPFSVPDRARPGM-DRRDIEISQVITNALNRAVILEEMPRAMVNVRIY--IT 118 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---G 487 ++D + A++ +S+A DAG+P+ VA +A G + D I D++ +E+ G Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDS----ICLDLTKEEEDFHEGG 174 Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 D +A + + I +Q+D G ++ + ++ K+G + I E+ K + R Sbjct: 175 ATDVPIALLPSKNEIVLLQLD---GKVTREELKKVIEMGKKGAMEIY-ELEKAALKRRF 229 >gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R126a Mutant From Aquifex Aeolicus Length = 255 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 29/206 (14%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +S Q L+ GS L G T+ I ++ E + L G + Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56 Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y+ LP AT + + R+G + EI R+ RA+ + T T+ Sbjct: 57 GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473 + ++ ++DG ++ A + G+ +A+ DA + PI VA +++G+V D Sbjct: 114 VDCDVIQADGGTATAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 IL D++ +ED +D V GT SG Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195 >gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC 35580] gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC 35580] Length = 801 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVK 673 D +VN I KG V K+ DFGAFV +GLVHIS+ S ++V+K SD+VK GD V Sbjct: 512 DKFQVNDIVKGHVTKITDFGAFVELSEGIEGLVHISEFSWVKKVSKPSDMVKIGDEVECM 571 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L +D G++ L +K V N Sbjct: 572 ILGYDIQAGRVSLGLKQVTAN 592 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 516 IMVMALQQAKRGRLHILNEMSKVLSES--RLQLGE----FTPRVEIMAIPPDQIRNVIGM 569 ++ LQ A R + + ++K++++S + LG F P + A D+ +++G Sbjct: 327 VLRKKLQNAYRDKTPVTGVITKLVNKSGYDVDLGANMIAFLPISQAAAQKVDKPESLLGQ 386 Query: 570 GGK--VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627 G + + + ++ G + NI V +E RE T++ +V KG V Sbjct: 387 KGSFYIEKMVFDRKGNRDNI----VVNRRKYLEDTVEKNREAFFENTNIGDV---VKGAV 439 Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686 FGAF+ G DGL+HI+ +S V + D VK+G + +K++ D K I LS Sbjct: 440 KSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIDLKVIRLDPAEKRINLS 498 Query: 687 MK 688 +K Sbjct: 499 LK 500 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 40/169 (23%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------------VNIDDDGTVKIASSSLA 601 ++ A P D I +G ++ R +V+ T A +++DD K + Sbjct: 588 QVTANPWDNIDERYPVGTRLTRKVVKLTNAGAFIELEEGIDGFLHVDDLSWTKRVRHPNS 647 Query: 602 EIEAAREM-----------------IRSITDVP--------EVNKIYKGQVVKVMDFGAF 636 E+E +E+ ++ ++D P + I +G+V V DFG F Sbjct: 648 ELEVGQELEVIVIECNPAEHRIRLGVKQLSDDPWKTFAEAYKPGSIVEGEVTSVTDFGIF 707 Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDRGK 682 V G +GL+H L R +V+K+ GD V +LD + + K Sbjct: 708 VKVPGGIEGLIHKQNLVENREDNPDEVLKKYAVGDKVKATVLDVNVKDK 756 >gi|300856020|ref|YP_003781004.1| putative 30S ribosomal protein S1 [Clostridium ljungdahlii DSM 13528] gi|300436135|gb|ADK15902.1| predicted 30S ribosomal protein S1 [Clostridium ljungdahlii DSM 13528] Length = 392 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 VN I +G V K+++ GAFV +GLVHIS++S E +AK SDV+K GD V VK+LD + Sbjct: 285 VNDIIEGTVSKIINIGAFVEIEPGVEGLVHISEISEEHIAKPSDVLKVGDRVKVKILDIN 344 Query: 679 DR-GKIKLSMK 688 + +I LS+K Sbjct: 345 TKDSRISLSIK 355 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++ FGAF+ G +GL HIS+LS R+ S+VV GD V V +L+ D D+ + Sbjct: 205 KGVVSRLTGFGAFIDLGGV-EGLAHISELSWRRIKNPSEVVSVGDCVEVYVLNADKDKNR 263 Query: 683 IKLSMKVVDQN 693 I LS+K +N Sbjct: 264 ISLSLKDTKKN 274 >gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus prevotii ACS-065-V-Col13] Length = 687 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 19/206 (9%) Query: 505 MDMKIGGISE--NIMVMALQQAKRGRLHILN---EMSKVLSESRLQLGEFTPRVEIMAIP 559 D+KI I E N +V++ + G+L L E +V++ +L +F VE+ + Sbjct: 430 WDLKIVSIDERKNRLVLSRKDVVEGQLDELWDELEEGQVVTGKVARLTDFGAFVEVNGL- 488 Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRS 612 D + +V + VE +N+ D+ VKI SL + + + Sbjct: 489 -DGLLHV----SDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQLLEKPFEA 543 Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + EV + G+VV ++DFGAFV +GLVH+S++S E V K SD + GD + V Sbjct: 544 FANQHEVGDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEV 603 Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKP 697 K++ D + K+ LS+K + + +P Sbjct: 604 KIISLDKEEEKVGLSIKALKEAPERP 629 >gi|307544277|ref|YP_003896756.1| ribonuclease RNAse H [Halomonas elongata DSM 2581] gi|307216301|emb|CBV41571.1| K06959 [Halomonas elongata DSM 2581] Length = 784 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++ D+ E + +G V V FGAFV +DGLVHIS LS + V VVK Sbjct: 645 REGVETLKDL-EPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSNKFVEDPRSVVKA 703 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D +R +I LSM++ DQ Sbjct: 704 GDIVKVKVMNVDLERSRIGLSMRLDDQ 730 >gi|72160504|ref|YP_288161.1| RNA binding S1:resolvase, RNase H-like fold [Thermobifida fusca YX] gi|71914236|gb|AAZ54138.1| RNA binding S1:Resolvase, RNase H-like fold [Thermobifida fusca YX] Length = 777 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 24/157 (15%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV------KIASSSLAEIE------------ 604 +R ++ G+ IR ++ T ++ D V + LAE+E Sbjct: 577 VRRILEATGRDIRALIGDTDTLRSLRPDDFVDERFGLPTVTDILAELEKPGRDPRPEFQT 636 Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A R+ + ITD+ E + +G V V FGAFV DGLVH+S +S V DV Sbjct: 637 AAFRDGVEDITDL-EPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDV 695 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKV---VDQNTGK 696 VK GD V VK+LD D R +I L++++ VDQ +G+ Sbjct: 696 VKPGDIVRVKVLDVDVRRKRISLTLRLDDEVDQRSGE 732 >gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii DSM 20548] gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii DSM 20548] Length = 686 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 VE +N+ D+ VKI SL + + + + EV + G+VV + Sbjct: 502 VEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNL 561 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 +DFGAFV +GLVH+S++S E V K SD + GD + VK++ D D K+ LS+K Sbjct: 562 LDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKA 621 Query: 690 VDQNTGKP 697 + + +P Sbjct: 622 LKEAPERP 629 >gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403] gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11] gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris MG1363] gi|281491326|ref|YP_003353306.1| 50S ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147] gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403] gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11] gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris MG1363] gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147] gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris NZ9000] gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56] Length = 408 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +V +FGAFV G DGLVH+S+LS R+ + SD VK GD V VK+L D + Sbjct: 197 IVEGTVSRVTNFGAFVDLGGI-DGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEA 255 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 256 GRLSLSLK 263 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +G V ++ DFGAFV +GLVH+SQ+S ERV DV+K G V VK+LD Sbjct: 279 VGSTVEGTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVK 338 Query: 679 D-RGKIKLSMKVVDQNTGKP 697 +I LS+K +++ +P Sbjct: 339 PAEERISLSIKALEEAPARP 358 >gi|225017261|ref|ZP_03706453.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum DSM 5476] gi|224950036|gb|EEG31245.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum DSM 5476] Length = 157 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 49/80 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V KI +G+V + +FGAF+ + G+VHIS++S V + +D +KEG+ V VK+L Sbjct: 4 DVGKIVEGKVTGITNFGAFIDLGEGKTGMVHISEVSAGYVKEIADHLKEGEQVKVKVLKV 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K +P Sbjct: 64 GDDGKISLSIKQAQPQAPRP 83 >gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] Length = 636 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D + N++ KG+V K+ +FG FV +GL+HIS+L+ E+V DVVK GD + Sbjct: 472 SIPDKYQPNQLVKGKVTKITNFGVFVGLEDGLEGLLHISELADEKVENPEDVVKVGDDIE 531 Query: 672 VKLLDFD-DRGKIKLSMKVV 690 VK+L D D KI LS K V Sbjct: 532 VKILRVDTDERKIGLSRKRV 551 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 7/118 (5%) Query: 577 IVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVM 631 I + G KV + D+ I S + IE R+ R S+ E+ + KG V + Sbjct: 172 IADYIGKKVECEVLKIDEERRNIVVSRRSLIEKKRQKDRDSLLQELEIGQRRKGVVKNIA 231 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 DFGAFV G DGL+HI+ +S R+ ++VVK D V V++L+ D +R KI L MK Sbjct: 232 DFGAFVDLGGI-DGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDHERQKIALGMK 288 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +GQVV VM +GAFV +GLVHIS++S T+R++ S+VV GD + V +L + ++ Sbjct: 309 RGQVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQ 368 Query: 682 KIKLSMKVVDQNTGKPI 698 +I L MK N + I Sbjct: 369 EISLGMKQTQSNPWENI 385 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V I KG+V + ++GAFV DGL+H+S +S T ++ S+++++G V K+L+ Sbjct: 391 VESIVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNI 450 Query: 678 -DDRGKIKLSMKVVD 691 +DR +I L +K +D Sbjct: 451 EEDRRRIALGLKQMD 465 >gi|291523544|emb|CBK81837.1| Ribosomal protein S1 [Coprococcus catus GD/7] Length = 235 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D V IY G+V ++ FGAFV F GLVHISQ++ + + ++VVK GD V VK+ Sbjct: 124 DAVNVGDIYDGKVERITSFGAFVGFADDLSGLVHISQMANKHIESPNEVVKVGDEVKVKV 183 Query: 675 LDFDDRGKIKLSMK 688 + D GKI LSMK Sbjct: 184 IGKKD-GKISLSMK 196 >gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays] Length = 242 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369 R+DGR +R + +VG++ R GS+LF G+T+ I V G RE + Q V+S Sbjct: 11 RVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKEAL 69 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428 R ++ M F +TG+ R RR + R+ + + T P++ + I + Sbjct: 70 VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++DG + A + ++LAL DAG+P+ + G + L D++ ED G Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCS----TPLLDLNYLEDSAGG 180 Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525 D V A D +T +QMD K+ EN+M +A++ K Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPIDTFENVMGLAIEGCK 220 >gi|261365311|ref|ZP_05978194.1| protein YhgF [Neisseria mucosa ATCC 25996] gi|288566239|gb|EFC87799.1| protein YhgF [Neisseria mucosa ATCC 25996] Length = 757 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEARG 716 >gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] Length = 259 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGRDS ++R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y+ +P AT S G S R + RL RA+ V+ A T+ I + Sbjct: 59 WITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ GS +AL+DA +PI VA +++G+V G++ ++ Sbjct: 119 VIQADGGTRTASITGSFVALVDAMNKLKEKGAISKLPIKSFVAAVSVGIV--GNEKLL-- 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D+ ED H+D + TD G Sbjct: 175 DLCYLEDSNAHVDMNIVMTDKG 196 >gi|291300160|ref|YP_003511438.1| RNA binding S1 domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290569380|gb|ADD42345.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM 44728] Length = 783 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V FGAFV +DGLVHIS +S + VA DV K GD V V++L+ D+ R Sbjct: 655 VLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNDYVADPRDVAKPGDIVKVRVLEVDEAR 714 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ D+ KP Sbjct: 715 KRISLTMRLQDKAEAKP 731 >gi|158321498|ref|YP_001514005.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141697|gb|ABW20009.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs] Length = 718 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V+DFGAFV +DGLVH+S+LS V DVV GD V VK++ D +R Sbjct: 648 IMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNAMDVVSVGDEVKVKIIGLDIER 707 Query: 681 GKIKLSMKVV 690 GKI LS+K V Sbjct: 708 GKISLSIKQV 717 >gi|117621065|ref|YP_854833.1| S1 RNA-binding domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562472|gb|ABK39420.1| S1 RNA binding domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 834 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + I+D VPE+ + +G V V +FGAFV +DGLVHIS L+ V +VVK Sbjct: 703 KEGVEKISDLVPEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVK 760 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+L+ D R +I L+M+ +D+ G+P Sbjct: 761 AGDIVRVKVLEVDVPRKRISLTMR-LDEKAGQP 792 >gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86a Mutant From Aquifex Aeolicus Length = 255 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +S Q L+ GS L G T+ I ++ E + L G + Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56 Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y+ LP AT + + R+G + EI R+ RA+ + T T+ Sbjct: 57 GWITAEYSMLPRATQQRTIRESVQGRIGGATH-EIQ--RMIGRAMRTAVELTKIGERTIW 113 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473 + ++ ++DG + A + G+ +A+ DA + PI VA +++G+V D Sbjct: 114 VDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 IL D++ +ED +D V GT SG Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195 >gi|28378535|ref|NP_785427.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1] gi|254556749|ref|YP_003063166.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1] gi|300767480|ref|ZP_07077392.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180692|ref|YP_003924820.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271371|emb|CAD64276.1| ribosomal protein S1 [Lactobacillus plantarum WCFS1] gi|254045676|gb|ACT62469.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1] gi|300495299|gb|EFK30455.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046183|gb|ADN98726.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 429 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ +FGAFV G DGLVH+S++S ERV K +DV+K G V VK+L D DR Sbjct: 206 VVEGKVARLTNFGAFVDLGGI-DGLVHVSEISYERVEKPADVLKVGQEVTVKILSVDADR 264 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 265 ERVSLSIK 272 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 + G+V ++ FGAFV +GLVHISQ+S + +A +DV+K G + VK+LD D Sbjct: 291 VLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDE 350 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 351 KRLALSIKALEE 362 >gi|157676014|emb|CAP07848.1| putative transcriptional accessory protein [Neisseria macacae] Length = 757 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716 >gi|319638887|ref|ZP_07993645.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102] gi|317399791|gb|EFV80454.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716 >gi|153005162|ref|YP_001379487.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5] gi|152028735|gb|ABS26503.1| ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5] Length = 578 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V KV DFGAFV +GLVH+S++ ERV DVV EG V VK++D D K Sbjct: 477 KGKVTKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVTEGQEVEVKVIDMDLHERK 536 Query: 683 IKLSMKVVDQNTGK 696 I LS+K ++++ G+ Sbjct: 537 IALSIKQLNRDGGE 550 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+VV + D+GAF+ +GLVH+S++S T+RV S +V +GD V +LD D + K Sbjct: 303 RGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAK 362 Query: 683 -IKLSMKVVDQN 693 I L MK ++ N Sbjct: 363 RISLGMKQIEAN 374 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 V +D D K S + +IEA + + D + +G+V V DFG FV D Sbjct: 353 VVLDIDPKAKRISLGMKQIEANPWTL--LEDKYPIGTTIRGEVRNVTDFGVFVGVEEGID 410 Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 GLVH+S +S TER+ D K+GD V +L+ D Sbjct: 411 GLVHVSDISWTERIKHPGDKFKKGDVVEAVVLNID 445 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I KGQV + D+GAF+ G DGL+H++ +S R+ S++ + G V V +L FD Sbjct: 216 ILKGQVKNLTDYGAFIDLGGI-DGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPAS 274 Query: 682 -KIKLSMKVVDQN 693 ++ L +K + ++ Sbjct: 275 ERVSLGLKQIQED 287 >gi|87308954|ref|ZP_01091092.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] gi|87288297|gb|EAQ80193.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645] Length = 536 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S+ A E A+E R T V +V ++ G V ++ DFGAFV G DGLVH+SQ+S +R Sbjct: 306 SARAVAEKAKEDSRKETMVTLQVGQMRDGTVTRLQDFGAFVDIGGV-DGLVHVSQISWDR 364 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 V SD + EG V VK+ D + GKI LS++ +N Sbjct: 365 VKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLEN 402 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V K+MDFGAFV +GLVH+S++S RV++ V+K G+ V VK+++ D Sbjct: 413 VGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNID 472 Query: 679 -DRGKIKLSMKVV 690 ++ +I LS+K + Sbjct: 473 KEKRRIGLSIKAL 485 >gi|1098475|gb|AAC37046.1| region E; orf; homologous to E. coli o622, Accession Number U18997 [Neisseria meningitidis] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A] gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A] Length = 243 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 15/193 (7%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE--DEQY 362 V+LD+ +R DGR R + G+L +GS+ GD + I+ G R+ + Sbjct: 9 VLLDENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNK-ILAGIFGPRDVHPKHM 67 Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 V + +G R Y+ P + E + APSRREI ++ + A+ P L QFP T Sbjct: 68 VRTETGILR----CRYHMSPFSVSE-RKKPAPSRREIEISKVIKEALEPSL-MLEQFPRT 121 Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 + + E+ ++DG S A + +S+AL DAG+P+ V+ A G V D I+ D++ Sbjct: 122 AVDVFIEVLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVAD----TIVLDVNN 177 Query: 482 DEDHLGHMDFKVA 494 +ED G D V Sbjct: 178 EEDQAGQADMPVG 190 >gi|58266336|ref|XP_570324.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans JEC21] gi|134111338|ref|XP_775811.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258475|gb|EAL21164.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226557|gb|AAW43017.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1189 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 12/94 (12%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLSTERVAKTS 661 ++ + P + KIY G + + DFGAFV G + +GL+H+S ++ RV Sbjct: 216 TVDERPVLYKIYNGTIANITDFGAFVTLDGVERKIDGNQRSNEGLIHVSNITNGRVNSPR 275 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 D +K G V VK++ KI LSMK VDQNTG Sbjct: 276 DFLKRGQRVKVKVMAVSP--KIGLSMKDVDQNTG 307 >gi|325129123|gb|EGC51971.1| S1 RNA binding domain protein [Neisseria meningitidis N1568] gi|325133149|gb|EGC55820.1| S1 RNA binding domain protein [Neisseria meningitidis M6190] gi|325138765|gb|EGC61317.1| S1 RNA binding domain protein [Neisseria meningitidis ES14902] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325094232|gb|EGC47542.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H88] Length = 1226 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 7/89 (7%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 250 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 309 Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696 V VK++ +G ++ LSMK VDQ TG+ Sbjct: 310 PVKVKVITI--QGIRVGLSMKEVDQGTGR 336 >gi|261391621|emb|CAX49059.1| putative RNA-binding protein [Neisseria meningitidis 8013] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|269214158|ref|ZP_05983718.2| protein YhgF [Neisseria cinerea ATCC 14685] gi|269144370|gb|EEZ70788.1| protein YhgF [Neisseria cinerea ATCC 14685] Length = 761 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 633 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 691 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEAGG 720 >gi|161869094|ref|YP_001598260.1| transcriptional accessory protein Tex, putative [Neisseria meningitidis 053442] gi|161594647|gb|ABX72307.1| transcriptional accessory protein Tex, putative [Neisseria meningitidis 053442] Length = 758 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 630 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 688 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 689 DVVKVKVLEVDAARKRIALTMRLDDEPGG 717 >gi|241758917|ref|ZP_04757029.1| protein tex [Neisseria flavescens SK114] gi|241320738|gb|EER56971.1| protein tex [Neisseria flavescens SK114] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM 20469] gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469] Length = 418 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V+ I +G V K++ FGAFV +GLVHIS+++ + V S V K GD V VK+++ D Sbjct: 291 VDAIIEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKQHVTAPSQVCKVGDVVQVKVMEID 350 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LSMK + G Sbjct: 351 LDRRRISLSMKAAAETLG 368 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V +++FGAFV G DGLVHIS+LS V S+VVK G V V++LD D +R + Sbjct: 211 KGTVSSIVEFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K ++ + +V Sbjct: 270 ISLGLKQTSEDPWRVLV 286 >gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 692 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G+VV ++DFGAFV +GLVH+S++S + V K SD + GDT+ VK++ Sbjct: 552 QVGDVVEGKVVNLLDFGAFVEVADGVEGLVHVSEISWDHVEKPSDELNVGDTIEVKIISI 611 Query: 678 D-DRGKIKLSMKVVDQNTGKP 697 D D K+ LS+K + + +P Sbjct: 612 DKDEEKVGLSIKALKEAPERP 632 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + D E ++ KG+V ++ DFGAFV G DGL+H+S ++ RV SDV+ GD + V Sbjct: 462 LWDELEEGQVVKGKVARLTDFGAFVEVNGL-DGLLHVSDIAWTRVEHPSDVLNVGDEIEV 520 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L + ++ +I L K Sbjct: 521 KILKLNKEKNRISLGRK 537 >gi|269214248|ref|ZP_06158449.1| protein YhgF [Neisseria lactamica ATCC 23970] gi|269210237|gb|EEZ76692.1| protein YhgF [Neisseria lactamica ATCC 23970] Length = 283 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 155 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 213 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 214 DVVKVKVLEVDAARKRIALTMRLDDEPGG 242 >gi|119479157|ref|XP_001259607.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya fischeri NRRL 181] gi|119407761|gb|EAW17710.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya fischeri NRRL 181] Length = 1230 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + K+Y G+V V DFGAFV+ G + DGLVH+S + RV SD+V G Sbjct: 255 LDDQPILYKVYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 V VK++ +I LSMK VDQ TG +V Sbjct: 315 PVKVKVISIQG-SRIGLSMKEVDQVTGLDLV 344 >gi|15676011|ref|NP_273139.1| putative transcriptional accessory protein Tex [Neisseria meningitidis MC58] gi|9978037|sp|Q51152|YHGF_NEIMB RecName: Full=Uncharacterized protein NMB0075 gi|7225295|gb|AAF40542.1| putative transcriptional accessory protein Tex [Neisseria meningitidis MC58] gi|316985915|gb|EFV64854.1| protein yhgF [Neisseria meningitidis H44/76] gi|325141225|gb|EGC63724.1| S1 RNA binding domain protein [Neisseria meningitidis CU385] gi|325199301|gb|ADY94756.1| S1 RNA binding domain protein [Neisseria meningitidis H44/76] gi|325205168|gb|ADZ00621.1| S1 RNA binding domain protein [Neisseria meningitidis M04-240196] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] Length = 261 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 26/246 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR+ +R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT EV++ G PS R + RL R++ V+ T+ I Sbjct: 59 WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ GS +AL DA +P+ VA +++G+V +G++ + Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-EGNELL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+S ED +D V TD G I +Q + G ++ + L A+ G I+ Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQ 233 Query: 536 SKVLSE 541 +VLS+ Sbjct: 234 KEVLSD 239 >gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] Length = 248 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 27/205 (13%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +E VR G + GS L GDT+ I ++ +++ L G Sbjct: 1 MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASI----EDKVPPFLKGQGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425 YN LP +TG +++R+ R EI RL RA+ V+ A T+ I Sbjct: 57 GWITAEYNMLPRSTGTRKVRDIARLKVDGRTMEIQ--RLIGRALRSVMDLKALGEKTIWI 114 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + ++ G+ +AL+DA PI K V+ ++G++ D Sbjct: 115 DCDVIQADGGTRTTSITGAFVALVDAVNKLHKEKPFEVYPIRKFVSATSVGILNDEK--- 171 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499 + D+ +ED +D V TD G Sbjct: 172 -ILDLCYEEDSNAKVDMNVIATDEG 195 >gi|313667392|ref|YP_004047676.1| RNA-associated protein [Neisseria lactamica ST-640] gi|313004854|emb|CBN86280.1| putative RNA-associated protein [Neisseria lactamica 020-06] Length = 757 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] Length = 261 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 26/246 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR+ +R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT EV++ G PS R + RL R++ V+ T+ I Sbjct: 59 WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ GS +AL DA +P+ VA +++G+V DG+ + Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDISKIPLKGFVAAVSVGIV-DGNKLL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+S ED +D V TD G I +Q + G ++ + L A+ G I+ Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQ 233 Query: 536 SKVLSE 541 +VLS+ Sbjct: 234 KEVLSD 239 >gi|149513007|ref|XP_001514955.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8, partial [Ornithorhynchus anatinus] Length = 468 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 5/82 (6%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666 R + P + IY+G+V +M FG FV G R +GLVHIS+L E RVA +DVV + Sbjct: 234 RPPPEEPSIGDIYQGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 293 Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688 G V VK+L F K LSMK Sbjct: 294 GQRVKVKVLSFTGT-KTSLSMK 314 >gi|315052548|ref|XP_003175648.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Arthroderma gypseum CBS 118893] gi|311340963|gb|EFR00166.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Arthroderma gypseum CBS 118893] Length = 1217 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 5/96 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAK 659 E R + D P + KIY G+V + DFG FV+ G R DGLVH+S + RV Sbjct: 232 EFRRPPTLEVDDRPILFKIYDGKVTGIKDFGVFVNLQGVRGRVDGLVHVSAMQEGARVNH 291 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 292 PSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 326 >gi|313884085|ref|ZP_07817851.1| putative ribosomal protein S1 [Eremococcus coleocola ACS-139-V-Col8] gi|312620532|gb|EFR31955.1| putative ribosomal protein S1 [Eremococcus coleocola ACS-139-V-Col8] Length = 438 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 7/90 (7%) Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AE EA R E ++++ E I +G V ++++FGAF+ G DGLVHIS+++ E VAK Sbjct: 195 AEREAKRAERLQTL----EEGSIIEGTVARIVNFGAFIDLDGV-DGLVHISRIAHEHVAK 249 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SD + G+TV VK+L D + G++ LS+K Sbjct: 250 PSDYLTPGETVKVKVLSVDLEEGRVSLSIK 279 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V ++ DFGAFV +GLVHISQ+S E +A +D ++EG + VK+L D + Sbjct: 298 VLKGTVKRLTDFGAFVEVFPGVEGLVHISQISHEHIATPADKLEEGQEIDVKVLSVDPEE 357 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 358 HRLSLSIKALEE 369 >gi|254671507|emb|CBA09093.1| putative transcription accessory protein [Neisseria meningitidis alpha153] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|59802211|ref|YP_208923.1| hypothetical protein NGO1895 [Neisseria gonorrhoeae FA 1090] gi|240015149|ref|ZP_04722062.1| hypothetical protein NgonD_11018 [Neisseria gonorrhoeae DGI18] gi|240017597|ref|ZP_04724137.1| hypothetical protein NgonFA_10626 [Neisseria gonorrhoeae FA6140] gi|240081741|ref|ZP_04726284.1| hypothetical protein NgonF_10618 [Neisseria gonorrhoeae FA19] gi|240114017|ref|ZP_04728507.1| hypothetical protein NgonM_10706 [Neisseria gonorrhoeae MS11] gi|240122220|ref|ZP_04735182.1| hypothetical protein NgonPI_10740 [Neisseria gonorrhoeae PID24-1] gi|240124510|ref|ZP_04737466.1| hypothetical protein NgonP_11353 [Neisseria gonorrhoeae PID332] gi|254494775|ref|ZP_05107946.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291] gi|268597839|ref|ZP_06132006.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268600083|ref|ZP_06134250.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11] gi|268683144|ref|ZP_06150006.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332] gi|293398254|ref|ZP_06642459.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62] gi|59719106|gb|AAW90511.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|226513815|gb|EEH63160.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291] gi|268551627|gb|EEZ46646.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268584214|gb|EEZ48890.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11] gi|268623428|gb|EEZ55828.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332] gi|291611517|gb|EFF40587.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325143290|gb|EGC65626.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945] gi|325143323|gb|EGC65657.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945] gi|325143350|gb|EGC65683.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|261379513|ref|ZP_05984086.1| protein YhgF [Neisseria subflava NJ9703] gi|284797976|gb|EFC53323.1| protein YhgF [Neisseria subflava NJ9703] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716 >gi|331268721|ref|YP_004395213.1| rpsA [Clostridium botulinum BKT015925] gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925] Length = 387 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +VN I +G+VVK++DFGAFV +GLVHI++++ E + K S+V+ GD V VK+L+ Sbjct: 284 KVNDIVEGKVVKLLDFGAFVEIEAGVEGLVHITEITDEHIGKPSEVLNIGDKVKVKILEI 343 Query: 678 D-DRGKIKLSMK 688 + + KI LS+K Sbjct: 344 NKEDKKIALSIK 355 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V ++ FGAFV G DGL+H S LS +RV S+VVK GD V V +L FD ++GKI Sbjct: 206 GIVRRLAKFGAFVDLGGV-DGLIHNSDLSWKRVNDPSEVVKVGDKVEVYVLKFDKEKGKI 264 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K ++++ I+ Sbjct: 265 ALSLKDIEEDPWNNII 280 >gi|325145402|gb|EGC67678.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013] gi|325145448|gb|EGC67723.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325135189|gb|EGC57814.1| S1 RNA binding domain protein [Neisseria meningitidis M13399] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|218767225|ref|YP_002341737.1| putative transcriptional accessory protein [Neisseria meningitidis Z2491] gi|9979534|sp|P57072|YHGF_NEIMA RecName: Full=Uncharacterized protein NMA0194 gi|121051233|emb|CAM07508.1| putative transcriptional accessory protein [Neisseria meningitidis Z2491] gi|302028148|gb|ADK90962.1| unknown [Neisseria meningitidis] gi|319411440|emb|CBY91852.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325203201|gb|ADY98654.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240355] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|304388872|ref|ZP_07370922.1| YhgF like protein [Neisseria meningitidis ATCC 13091] gi|304337165|gb|EFM03349.1| YhgF like protein [Neisseria meningitidis ATCC 13091] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|240124617|ref|ZP_04737503.1| hypothetical protein NgonSK_00055 [Neisseria gonorrhoeae SK-92-679] gi|240129190|ref|ZP_04741851.1| hypothetical protein NgonS_11312 [Neisseria gonorrhoeae SK-93-1035] gi|268683184|ref|ZP_06150046.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679] gi|268687573|ref|ZP_06154435.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-93-1035] gi|268623468|gb|EEZ55868.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679] gi|268627857|gb|EEZ60257.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-93-1035] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|331002776|ref|ZP_08326290.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413265|gb|EGG92633.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon 107 str. F0167] Length = 232 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E E A++ ++ D +V + +G+V + D+GAF+ GL+H+SQ+S +RV + Sbjct: 110 EKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGDGISGLLHVSQISNQRVKNPA 169 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V+KEG+TV VK+ D GKI LS K +++N Sbjct: 170 AVLKEGETVKVKVTGIKD-GKISLSKKALEEN 200 >gi|121633956|ref|YP_974201.1| putative transcriptional accessory protein [Neisseria meningitidis FAM18] gi|120865662|emb|CAM09383.1| putative transcriptional accessory protein [Neisseria meningitidis FAM18] Length = 758 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 630 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 688 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 689 DVVKVKVLEVDAARKRIALTMRLDDEPGG 717 >gi|296315141|ref|ZP_06865082.1| protein YhgF [Neisseria polysaccharea ATCC 43768] gi|296837946|gb|EFH21884.1| protein YhgF [Neisseria polysaccharea ATCC 43768] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDVARKRIALTMRLDDEPGG 716 >gi|291165668|gb|EFE27716.1| S1 RNA binding domain protein [Filifactor alocis ATCC 35896] Length = 718 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I ++ D+ E + + G V V+DFGAFV DGLVHIS+LS + V D+V+ GD Sbjct: 635 IMTLDDLKE-DMVLTGTVRNVLDFGAFVDIGLKSDGLVHISELSDKYVKHPLDIVRIGDI 693 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693 V V+++ D +RGK+ LSMK + Q+ Sbjct: 694 VTVRVIKIDRERGKVGLSMKQLPQH 718 >gi|298370332|ref|ZP_06981648.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281792|gb|EFI23281.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str. F0314] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716 >gi|145249326|ref|XP_001401002.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Aspergillus niger CBS 513.88] gi|134081680|emb|CAK46614.1| unnamed protein product [Aspergillus niger] Length = 1231 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + K+Y G+V V DFGAFV+ G + DGLVH+S + RV SD+V G Sbjct: 255 LDDQPVLYKVYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V VK++ +I LSMK VDQ TG Sbjct: 315 PVKVKVVSIQG-SRIGLSMKEVDQVTG 340 >gi|260771983|ref|ZP_05880900.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14] gi|260612850|gb|EEX38052.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14] Length = 773 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G V V +FGAFV +DGLVHIS L+ +A DVVK GD V VK+++ Sbjct: 649 EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFIADPRDVVKAGDIVKVKVMEV 708 Query: 678 D-DRGKIKLSMKVVDQ 692 D R +I LSM++ D+ Sbjct: 709 DAQRKRIALSMRLNDE 724 >gi|254805860|ref|YP_003084081.1| probable transcriptional accessory protein [Neisseria meningitidis alpha14] gi|254669402|emb|CBA08583.1| probable transcriptional accessory protein [Neisseria meningitidis alpha14] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325197366|gb|ADY92822.1| S1 RNA binding domain protein [Neisseria meningitidis G2136] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera genomosp. type_1 str. 28L] gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera genomosp. type_1 str. 28L] Length = 635 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ ++ S A +E RE R+ + E N G VVK+M +GAFV G +GL+ Sbjct: 441 DEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDL-GGVEGLL 499 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 HIS +S +R+ DV+ GDTV V + FD +R +I LSMK + +N Sbjct: 500 HISDISWKRIGAVEDVLSVGDTVHVLVQQFDRERNRISLSMKALQKN 546 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V K+++ GA + GL+HIS L+ +R A D+V GD + VK++ D Sbjct: 557 VGDVVEGEVKKILNIGAILAIDPEIQGLLHISALTEQRGAAVKDLVAIGDKMQVKIIKID 616 Query: 679 -DRGKIKLSM 687 D+ K+ LS+ Sbjct: 617 PDKHKVALSV 626 >gi|255075577|ref|XP_002501463.1| predicted protein [Micromonas sp. RCC299] gi|226516727|gb|ACO62721.1| predicted protein [Micromonas sp. RCC299] Length = 1170 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PEV IY+G+V VMDFG FV F +GLVH+S +S+++ D V+ +VWVK Sbjct: 196 PEVGAIYRGRVTNVMDFGCFVELTEFSRKFEGLVHVSMISSQKGVNARDQVQRDQSVWVK 255 Query: 674 LLDFDDRGKIKLSMKVVDQNT 694 + ++ LSM+ V+Q+T Sbjct: 256 VTT-RSATRMALSMRDVNQST 275 >gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047] gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047] Length = 402 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 +++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FGAF+ G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRHRISLSIK 266 >gi|156032920|ref|XP_001585297.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980] gi|154699268|gb|EDN99006.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1202 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 5/94 (5%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSD 662 R + I D + KIY G V V DFGAFV+ G + DGLVH+S L +RV SD Sbjct: 222 RPLTPEIDDEVNLYKIYDGHVTGVKDFGAFVNIHGVKGKVDGLVHVSALVEGQRVNHPSD 281 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 +V V VK++ + +I LSMK VDQ TG+ Sbjct: 282 LVSRNQPVKVKVIKIEG-NRIGLSMKDVDQETGE 314 >gi|240118974|ref|ZP_04733036.1| hypothetical protein NgonPID_11052 [Neisseria gonorrhoeae PID1] gi|268604688|ref|ZP_06138855.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1] gi|268588819|gb|EEZ53495.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1] Length = 757 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGIHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075] gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075] gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463] Length = 403 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 +++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V + +G+V ++ +FG F+ G DGLVHIS++S + V K SDV+K G V +K++ Sbjct: 197 VGDVIEGKVSRLTNFGGFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|227873636|ref|ZP_03991873.1| S1 domain RNA-binding protein [Oribacterium sinus F0268] gi|227840507|gb|EEJ50900.1| S1 domain RNA-binding protein [Oribacterium sinus F0268] Length = 753 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + + D+ E + +G V V+DFGAFV +DGLVHIS LS + V DVVK Sbjct: 669 REDVLELEDLKE-GMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHPLDVVKL 727 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+L D R KI LSMK V+ Sbjct: 728 GDIVKVKVLSVDVARKKISLSMKDVE 753 >gi|254507323|ref|ZP_05119459.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16] gi|219549783|gb|EED26772.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16] Length = 776 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E + +G V V +FGAFV +DGLVHIS L+ + VA +VVK G Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVADPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLTDE 724 >gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4] gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4] Length = 261 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 26/246 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR+ +R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT EV++ G PS R + RL R++ V+ A T+ I Sbjct: 59 WITSEYGMLPRATEVRNPREVTK-GRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ GS +AL DA +P+ VA +++G+V +G+ + Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGELQKIPLKSFVAAVSVGIV-EGNKLL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+S ED +D V TD G I +Q + G S L A G I+ Sbjct: 175 -DLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQ 233 Query: 536 SKVLSE 541 +VLS+ Sbjct: 234 KEVLSD 239 >gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5] gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5] Length = 255 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +S Q L+ GS L G T+ I ++ E + L G + Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56 Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y+ LP AT + + R+G + EI R+ RA+ + T T+ Sbjct: 57 GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473 + ++ ++DG + A + G+ +A+ DA + PI VA +++G+V D Sbjct: 114 VDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 IL D++ +ED +D V GT SG Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195 >gi|320157699|ref|YP_004190078.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio vulnificus MO6-24/O] gi|319933011|gb|ADV87875.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio vulnificus MO6-24/O] Length = 774 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I +++D+ EV I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLSDE 724 >gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10] Length = 403 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 +++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FG F+ G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 197 VGDVIEGKVSRLTNFGGFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRHRISLSIK 266 >gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 491 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis 157F] gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM 1217] gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8] gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM 1217] gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis 157F] Length = 491 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|169334402|ref|ZP_02861595.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM 17244] gi|169259119|gb|EDS73085.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM 17244] Length = 714 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V V+DFGAFV +DGLVHISQ+S + SD++K GD V V +LD + D+ + Sbjct: 648 KGTVRNVVDFGAFVDIGVHQDGLVHISQISNTFIKHPSDILKTGDIVEVTVLDVNKDKNR 707 Query: 683 IKLSM 687 I LSM Sbjct: 708 ISLSM 712 >gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] Length = 261 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 26/246 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR+ +R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT EV++ G PS R + RL R++ V+ T+ I Sbjct: 59 WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ GS +AL DA +P+ VA +++G+V +G++ + Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-EGNELL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+S ED +D V TD G I +Q + G ++ + L A+ G I+ Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQ 233 Query: 536 SKVLSE 541 +VLS+ Sbjct: 234 KEVLSD 239 >gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705] gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A] gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705] gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A] Length = 491 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68] gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68] Length = 491 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|27364308|ref|NP_759836.1| transcription accessory protein [Vibrio vulnificus CMCP6] gi|27360426|gb|AAO09363.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Vibrio vulnificus CMCP6] Length = 774 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I +++D+ EV I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLSDE 724 >gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph T125a Mutant From Aquifex Aeolicus Length = 255 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R +S Q L+ GS L G T+ I ++ E + L G + Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56 Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y+ LP AT + + R+G + EI R+ RA+ + T T+ Sbjct: 57 GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473 + ++ ++DG + A + G+ +A+ DA + PI VA +++G+V D Sbjct: 114 VDCDVIQADGGARTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 IL D++ +ED +D V GT SG Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195 >gi|320161941|ref|YP_004175166.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1] gi|319995795|dbj|BAJ64566.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1] Length = 292 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + KG VV++ FGAFV R GL+HIS+++ V + S+VVKEGD + V+++DF+ + Sbjct: 104 VVKGTVVRLEKFGAFVEIGAERPGLLHISEMAHGYVREPSEVVKEGDEIEVEVIDFNRKK 163 Query: 682 K-IKLSMKVV 690 + IKLS K + Sbjct: 164 RQIKLSRKAL 173 >gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4] gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196] gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4] gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196] Length = 382 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E I +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300] gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300] Length = 587 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681 ++G+VV++ DFG FV+ G DGLVH S+L+ R DVVK GD V V+++D D+ R Sbjct: 251 FEGEVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRE 309 Query: 682 KIKLSMKVVDQN 693 +I LSMK + Q+ Sbjct: 310 RINLSMKSLTQD 321 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 KG++ + DFG F+ +GL+HIS+L T+RV +D+ K+GD + +L+ D Sbjct: 424 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 478 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680 +G+V + +FGAFV +GLVH+S++S T+RV ++V+KEGD V +L D + Sbjct: 337 RGKVTNLTNFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPK 394 >gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29] gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28] gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3] gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3] gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28] gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29] Length = 382 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E I +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM 20098] gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM 20098] Length = 490 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048] gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048] Length = 382 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E I +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745] gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745] Length = 402 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 7/90 (7%) Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AE EA R E++ SI + + G+V ++ +FGAFV G DGLVHIS++S +RV K Sbjct: 187 AEREAKRGEVLASIKE----GDVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYQRVDK 241 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SDV+K G+ V VK+L D ++ ++ LS+K Sbjct: 242 PSDVLKAGEEVQVKVLSVDAEKERVSLSIK 271 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + G+V ++ DFGAFV +GLVHISQ+S + +A +DV+KEG + VK+L+ Sbjct: 290 VLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEVHPAE 349 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 350 HRLALSIKALEE 361 >gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 691 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 VE +NI DD VKI SL + + T+ EV + G+VV + Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNL 561 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 +DFGAFV +GL+H+S++S + V K SD + GD V VK+L D + KI LS+K Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWDHVEKPSDELNVGDEVEVKILSIDPEEEKIGLSIKA 621 Query: 690 VDQ 692 + + Sbjct: 622 LKE 624 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D E ++ G+V ++ DFGAF+ G+ DGL+H+S ++ RV DV+ GD + VK+ Sbjct: 461 DELEEGQVITGKVARLTDFGAFIEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519 Query: 675 LDFD-DRGKIKLSMK 688 L + ++ +I L K Sbjct: 520 LKLNKEKNRISLGRK 534 >gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] Length = 241 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 22/242 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R I A+VG++ + GS++F G+T+ I V G RE + + S ++ Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPRE----IQNKSQQKK 63 Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 ND + Y+ +TG+ R RR + R+ + + T P++ + I Sbjct: 64 NDHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACI-LTELMPHSQIDIFL 121 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 ++ ++DG + A + ++LAL DAG+P+ + G + L D++ ED G Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVEDSAG 177 Query: 488 HMDFKVAGTDS--GITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 D V +T +QMD K+ + E + +A + K I + +VL E+ Sbjct: 178 GADVTVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCK----AIAERIREVLQENTK 233 Query: 545 QL 546 QL Sbjct: 234 QL 235 >gi|182418532|ref|ZP_02949820.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium butyricum 5521] gi|237667880|ref|ZP_04527864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377624|gb|EDT75172.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium butyricum 5521] gi|237656228|gb|EEP53784.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 634 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 593 VKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 +K+ +S A +E A+ EM + +N + KG+V + DFGAFV G DGL+H+SQ Sbjct: 450 IKVVASRRALLEKAKNEMETKAWESFNLNDVVKGEVKRFTDFGAFVEINGV-DGLLHLSQ 508 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +S V K DV+K G V VK++ D + K+ LSMK Sbjct: 509 ISWNHVKKIEDVLKIGQIVDVKIIGLDKETKKLSLSMK 546 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE + I G+VV++ FGAFV DGLVHIS++S ER+ + V+ G + K+L Sbjct: 561 PE-DSIVLGKVVRLSKFGAFVELEPGVDGLVHISKISHERIEDPAQVLTIGQEIKAKILS 619 Query: 677 FDDRGK-IKLSMK 688 D+ K I LS+K Sbjct: 620 VDEENKRISLSIK 632 >gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213] gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213] Length = 491 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|309389980|gb|ADO77860.1| RNA binding S1 domain protein [Halanaerobium praevalens DSM 2228] Length = 121 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G++ + +FGAFV GLVHIS+++ V S+ +KEGD V VK+++ Sbjct: 4 EVGSIVVGEITGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEGDDVKVKVINV 63 Query: 678 DDRGKIKLSMK 688 D+ GKI LS+K Sbjct: 64 DNDGKIGLSIK 74 >gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30] gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10] gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20] gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755] gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30] gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10] gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20] gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E E A++ + D+ E ++ +G+V ++ DFGAFV G DGLVH+S++S Sbjct: 182 LSHKAVVEAEKAKQKEALLADLYEGQEV-EGKVARLTDFGAFVDLGGI-DGLVHVSEISH 239 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 V K SDV+ GDTV V++L D D+ ++ LS+K Sbjct: 240 GHVGKPSDVLSVGDTVNVRILSVDADKERVSLSIK 274 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +I + V + G V ++ FGAFV +GL+HISQ+S + +A +V++EGD V Sbjct: 283 NIEEQAAVGSVLTGTVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLQEGDEVQ 342 Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692 VK+L+ + +I LS+K +++ Sbjct: 343 VKVLEVNPSEHRIALSIKALEK 364 >gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621] gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621] Length = 382 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E I +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs] Length = 378 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 2/65 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+V ++ DFGAFV G DGLVHIS LS RV S+VV GD V V +LDFD D+GK+ Sbjct: 201 GEVKRITDFGAFVDIGGI-DGLVHISDLSWGRVKHPSEVVTIGDIVKVVVLDFDKDKGKV 259 Query: 684 KLSMK 688 L +K Sbjct: 260 SLGLK 264 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 32/44 (72%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + I +G+VV+++DFGAFV DGLVHISQ+S + +AK S+ Sbjct: 280 IGSIVEGKVVRLVDFGAFVELEVGLDGLVHISQISEKHIAKPSE 323 Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679 +I G+V+ V + FV+ DG++ ++S + + S++VKEGD + V +L DD Sbjct: 23 EIVSGKVINVTNNEIFVNVGYKSDGIIPKDEISNDITVQPSELVKEGDEIKVYVLSLDDG 82 Query: 680 RGKIKLSMKVVDQNTG 695 G + LS K VD G Sbjct: 83 DGNVLLSKKRVDLTKG 98 >gi|28210090|ref|NP_781034.1| transcription accessory protein [Clostridium tetani E88] gi|28202526|gb|AAO34971.1| transcription accessory protein [Clostridium tetani E88] Length = 718 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHIS+LS + V DVVK GD V V++L+ D+ RG+I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM 13280] gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM 13280] Length = 810 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + RSI D+ EV KG V V+DFGAFV +DGLVHIS+L+ V S+VV G Sbjct: 724 QAARSIEDL-EVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVG 782 Query: 668 DTVWVKLLDFDD-RGKIKLSM 687 DTV V + D RGKI L+M Sbjct: 783 DTVTVWITGVDKARGKISLTM 803 >gi|242278186|ref|YP_002990315.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638] gi|242121080|gb|ACS78776.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638] Length = 503 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 8/92 (8%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E E ARE + DV + + + +G+V K+M FGAFV +G+VHIS+LS R AK Sbjct: 185 EQEKAREAF--MQDV-QPDAVMEGKVTKLMPFGAFVELTPGVEGMVHISELSWSRSAKPE 241 Query: 662 DVVKEGDTVWVKLLDFDDRG-----KIKLSMK 688 DVV+ GD V V++L + R KI LS+K Sbjct: 242 DVVQPGDEVSVRILSMEPRKDGKGLKIGLSLK 273 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 G VV+ DFGAFV +GLVH+S++S T+RV K D V G V V + D D + + Sbjct: 295 GTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQEVAVMVKDIDPVKRR 354 Query: 683 IKLSMK 688 I LSMK Sbjct: 355 IGLSMK 360 >gi|170718656|ref|YP_001783852.1| RNA-binding S1 domain-containing protein [Haemophilus somnus 2336] gi|168826785|gb|ACA32156.1| RNA binding S1 domain protein [Haemophilus somnus 2336] Length = 767 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V + +VVK GD Sbjct: 642 VEEITDL-KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENSHEVVKTGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M+ +D+N K Sbjct: 701 VKVKVLEVDVARKRIGLTMR-LDENPSK 727 >gi|148643352|ref|YP_001273865.1| transcriptional accessory protein S1 RNA binding family protein [Methanobrevibacter smithii ATCC 35061] gi|148552369|gb|ABQ87497.1| transcriptional accessory protein, S1 RNA binding family, Tex [Methanobrevibacter smithii ATCC 35061] Length = 715 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I +G V ++DFGAFV +DGLVHISQL+ + V D+V Sbjct: 633 RKNVLSIDDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSV 691 Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687 GD V VK+LD D R +I+LSM Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713 >gi|37678418|ref|NP_933027.1| transcriptional accessory protein [Vibrio vulnificus YJ016] gi|37197157|dbj|BAC92998.1| transcriptional accessory protein [Vibrio vulnificus YJ016] Length = 763 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I +++D+ EV I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 245 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%) Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 V+LD+ +R DGR + R I + G L+ GS+ GD + I+V G R+ + Sbjct: 9 VLLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNK-ILVGVFGPRD--VHPK 65 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 +S T + Y+ P + E + APSRREI ++ + A+ P + +FP T + Sbjct: 66 HMSNTDTGILRVRYHMEPFSVTE-RKNPAPSRREIEISKVIKEALEPAV-MLEKFPRTAV 123 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DG + A + +S+AL DAG+P+ VA A G D I+ D++ +E Sbjct: 124 DVFIEVLQADGGTRCAALSAASVALADAGIPMRDMVAACAAGKAAD----TIILDVNNEE 179 Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506 D G D + S IT +Q+D Sbjct: 180 DQAGQADMPIGYMPSLEKITLLQLD 204 >gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200] gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200] Length = 382 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSQKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 336 KRISLSIK 343 >gi|157676006|emb|CAP07844.1| putative transcriptional accessory protein [Neisseria weaveri] Length = 770 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 8/97 (8%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 641 EGINEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 699 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ------NTGKP 697 D V VK+L+ D R +I L+M++ D+ +G+P Sbjct: 700 DVVKVKVLEVDAARKRIALTMRLDDEAGSGTARSGRP 736 >gi|116333424|ref|YP_794951.1| 30S ribosomal protein S1 [Lactobacillus brevis ATCC 367] gi|116098771|gb|ABJ63920.1| SSU ribosomal protein S1P [Lactobacillus brevis ATCC 367] Length = 434 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ +FGAFV G DGLVH+S+++ ERV K SDV+K G V VK+L D DR Sbjct: 208 VVDGKVARLTNFGAFVDLGGV-DGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDADR 266 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 267 DRISLSIK 274 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683 G V ++ FGAFV +GLVHISQ+S + +A +DV+K G + VK+LD + ++ Sbjct: 296 GTVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPADVLKVGQEIKVKVLDVRPEDHRL 355 Query: 684 KLSMKVVDQ 692 LS+K +++ Sbjct: 356 ALSIKALEE 364 >gi|292669439|ref|ZP_06602865.1| RNA-binding protein [Selenomonas noxia ATCC 43541] gi|292648892|gb|EFF66864.1| RNA-binding protein [Selenomonas noxia ATCC 43541] Length = 148 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 45/80 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G V + +FGAFV + GL+HIS+++ V D ++E D V K+L Sbjct: 4 EVGSIVEGVVTGITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLRERDQVKAKVLTI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 DDRGKI LS+K + P Sbjct: 64 DDRGKIGLSIKALQAKPAVP 83 >gi|238924000|ref|YP_002937516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|238875675|gb|ACR75382.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|291524741|emb|CBK90328.1| Ribosomal protein S1 [Eubacterium rectale DSM 17629] gi|291528938|emb|CBK94524.1| Ribosomal protein S1 [Eubacterium rectale M104/1] Length = 371 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG+V ++ DFGAF+ D L+H+SQ+S + V K SDV+K G V K+++F+ D Sbjct: 279 IVKGKVARMTDFGAFIELAPGVDALLHVSQISKDHVEKPSDVLKIGQEVEAKVVEFNEDD 338 Query: 681 GKIKLSMKVV 690 KI LSMK + Sbjct: 339 KKISLSMKAL 348 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V V DFGAF+ G DGL+HIS++S RV V G TV V + + + Sbjct: 193 VGDVIEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFTVGQTVRVFVKNIN 251 Query: 679 DRGKIKLSMKVVDQN 693 KI LSMK D+N Sbjct: 252 G-SKIALSMKFDDEN 265 >gi|308802864|ref|XP_003078745.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS) [Ostreococcus tauri] gi|116057198|emb|CAL51625.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS) [Ostreococcus tauri] Length = 1090 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P V ++ +G+V V+DFGAFV F +GLVH+S ++ + D GD V+VK Sbjct: 173 PSVGEVCRGRVTNVLDFGAFVELVEFKRKFEGLVHVSAIADRHLKSAKDGASRGDRVFVK 232 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 +L + + K+ LSMK VDQ TGK Sbjct: 233 VLSRNGQ-KMSLSMKEVDQITGK 254 >gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125] gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125] Length = 383 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV G DGLVHISQL+ RV ++VVKEGD V VK+L D D Sbjct: 191 VVEGTVQRLTDFGAFVDVGGV-DGLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDS 249 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 250 ERVSLSIK 257 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++ FGAFV +GLVHISQ++ + +V+ EG+ V K+LD + Sbjct: 276 VIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISE 335 Query: 681 GKIKLSMKVVDQNTG 695 +I LS++ + + G Sbjct: 336 KRISLSIRELLDDAG 350 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 607 REMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 EM +T++ V + G+V KV D AFV DG++ IS+LS+ V K SDV+ Sbjct: 3 EEMNNEVTEMKSFSVGDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVL 62 Query: 665 KEGDTVWVKLLDFDD 679 EGD + +K+L +D Sbjct: 63 SEGDELELKVLKVED 77 >gi|222445594|ref|ZP_03608109.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii DSM 2375] gi|222435159|gb|EEE42324.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii DSM 2375] Length = 715 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I +G V ++DFGAFV +DGLVHISQL+ V D+V Sbjct: 633 RKNVLSIEDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADRFVKHPLDIVSV 691 Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687 GD V VK+LD D R +I+LSM Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713 >gi|325267676|ref|ZP_08134327.1| YhgF like protein [Kingella denitrificans ATCC 33394] gi|324980800|gb|EGC16461.1| YhgF like protein [Kingella denitrificans ATCC 33394] Length = 758 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|225025370|ref|ZP_03714562.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC 23834] gi|224941814|gb|EEG23023.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC 23834] Length = 758 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|20808801|ref|NP_623972.1| hypothetical protein TTE2443 [Thermoanaerobacter tengcongensis MB4] gi|20517450|gb|AAM25576.1| Ribosomal protein S1 domains [Thermoanaerobacter tengcongensis MB4] Length = 137 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G V+ + DFGAF+ + GLVHIS+++ V D +KE D V VK+L Sbjct: 4 EVGDIVEGTVLNITDFGAFIKLPEGKTGLVHISEVANTYVKNIRDFLKENDRVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EPNGKISLSIK 74 >gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 397 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 3/88 (3%) Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++A RE R ++ + + +G+V ++ +FGAF++ G DGLVH+S++S ERV K + Sbjct: 181 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFINL-GGFDGLVHVSEISYERVNKPA 239 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D +K G V VK+L D ++G+I LS+K Sbjct: 240 DALKVGQEVKVKVLSVDAEKGRISLSIK 267 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ FGAFV +GLVHISQ+S + +A ++V+ G+ V VK+L D Sbjct: 286 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 345 Query: 682 -KIKLSMKVVDQNTGKPIV 699 ++ LS+K + + KP V Sbjct: 346 HRLALSIKALQE---KPAV 361 >gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF] Length = 383 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I D + I +G+VV+++DFGAFV DGLVHISQ+S +AK S+ + G V V Sbjct: 274 IADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAKPSEELHVGQNVNV 333 Query: 673 KLLDFDDRGK-IKLSMKVVDQNT 694 K+LD + GK I LSM +++ Sbjct: 334 KVLDINIDGKRISLSMTAAQEDS 356 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G+V ++ +FGAFV G DGLVHIS+LS RV S+VV D V VK++DFD+ GK Sbjct: 200 RGEVKRLTNFGAFVDIGGI-DGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGK 258 Query: 683 IKLSMK 688 + LS+K Sbjct: 259 VSLSIK 264 >gi|219870727|ref|YP_002475102.1| transcriptional accessory protein (S1 RNA binding domain) [Haemophilus parasuis SH0165] gi|219690931|gb|ACL32154.1| transcriptional accessory protein (S1 RNA binding domain) [Haemophilus parasuis SH0165] Length = 769 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I+D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 644 VEEISDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDV 702 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M++ D+ T K Sbjct: 703 VKVKVLEVDVARKRIALTMRLDDKPTDK 730 >gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 4 [Canis familiaris] Length = 244 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 14/239 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E + V + Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-ARGVRT 63 Query: 366 LSGTQRNDFM-MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 L TQR + Y+ +TGE R R+ G R+ + + Sbjct: 64 L--TQRKALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQID 121 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S E+ Sbjct: 122 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEE 177 Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 G + + I ++MD + + E+ + L+ A R + + +V+ + Sbjct: 178 AAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 233 >gi|258574049|ref|XP_002541206.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704] gi|237901472|gb|EEP75873.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704] Length = 1223 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P + KIY G+V + +FGAFV+ G R DGLVH+S + RV SD+V G V V Sbjct: 253 PILYKIYDGRVTGIKEFGAFVNLQGVRGKVDGLVHVSSMQDGARVNHPSDLVSRGQPVKV 312 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K++ +I LSMK VDQ TG+ +V Sbjct: 313 KIVSIQG-TRIGLSMKEVDQVTGRDLV 338 >gi|224010385|ref|XP_002294150.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970167|gb|EED88505.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 303 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 17/97 (17%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 PE+ I++G V ++ +G FV GLVHISQL +V +DVV D VWVK++ Sbjct: 34 PELYSIHRGSVSRIEPYGCFVKLHTTPLSGLVHISQLHNTKVENVNDVVSLEDEVWVKVM 93 Query: 676 DFD----------------DRGKIKLSMKVVDQNTGK 696 D R K+KLSMK V+Q+ G+ Sbjct: 94 DVQVEQIEGSGEDGGGFTRQRHKVKLSMKYVNQDNGE 130 >gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803] gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803] Length = 382 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 3/97 (3%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+ Sbjct: 163 VILSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQI 220 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 221 SHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVTVKVLEVHVAE 335 Query: 681 GKIKLSMK-VVDQNT 694 +I LS+K +D+N Sbjct: 336 KRISLSIKEALDENN 350 >gi|157676004|emb|CAP07843.1| putative transcriptional accessory protein [Neisseria canis] Length = 762 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 8/97 (8%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS V +VVK G Sbjct: 633 EGINEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 691 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ------NTGKP 697 D V VK+L+ D R +I L+M++ D+ +G+P Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEAGSGSTRSGRP 728 >gi|70997647|ref|XP_753563.1| RNA helicase-like splicing factor (HRH1) [Aspergillus fumigatus Af293] gi|66851199|gb|EAL91525.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus fumigatus Af293] gi|159126706|gb|EDP51822.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus fumigatus A1163] Length = 1230 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P + KIY G+V V DFGAFV+ G + DGLVH+S + RV SD+V G V V Sbjct: 259 PILYKIYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQPVKV 318 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K++ +I LSMK VDQ TG +V Sbjct: 319 KVISIQG-SRIGLSMKEVDQVTGLDLV 344 >gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|294669724|ref|ZP_06734790.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308290|gb|EFE49533.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 758 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN] gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US] gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US] gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1] gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1] gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01] gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN] gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US] gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US] gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1] gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1] Length = 402 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I++G+V + +FGAFV GLVH+S++S + V K SDV+K G +V VK+L+ D D Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FGAF+ G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 197 VGDVVEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRHRISLSIK 266 >gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264] gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676] gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185] gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2] gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15] gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24] gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550] gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W] gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264] gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W] gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550] gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24] gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15] gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2] gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185] gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676] gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L] gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus E33L] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis] Length = 243 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 20/241 (8%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGT 369 +R+DGR +R + AQ+G++ + GS++F G+T+ I V G E + L Sbjct: 9 LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAV-YGPHEVQNKNQQLPDQAL 67 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428 R ++ M NF +TG+ R RR + R+ + + T P T + I + Sbjct: 68 VRCEYSMA-NF---STGDRPRRSKGDRRATEISLVIRQTMEATI-LTHLMPRTQIDIFVQ 122 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488 + ++DG + A + ++LAL DAG+P+ V A G + L D++ ED G Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTP----LLDMNYMEDSAGG 178 Query: 489 MDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545 D V ++ +QMD K+ I E +M +A++ K I+ + VL E+ Q Sbjct: 179 PDVAVGLMTKMDKLSLLQMDSKLPMDIFETVMQLAIEGCK----AIVRYIQDVLLENTKQ 234 Query: 546 L 546 L Sbjct: 235 L 235 >gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|222095228|ref|YP_002529288.1| 30S ribosomal protein s1 [Bacillus cereus Q1] gi|221239286|gb|ACM11996.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus Q1] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|312144296|ref|YP_003995742.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904947|gb|ADQ15388.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus'] Length = 121 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V + +FGAFV GLVHIS+++ V S+ +KE D V VK+++ Sbjct: 4 EVGSIVDGKVTGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEDDDVKVKVINI 63 Query: 678 DDRGKIKLSMK 688 DD GKI LS+K Sbjct: 64 DDDGKIGLSIK 74 >gi|317054824|ref|YP_004103291.1| RNA-binding S1 domain-containing protein [Ruminococcus albus 7] gi|315447093|gb|ADU20657.1| RNA binding S1 domain protein [Ruminococcus albus 7] Length = 172 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KIY+G+V + FGAFV G+VHIS+++ V++ D ++EG TV VK+L Sbjct: 4 EVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVSEIKDHLQEGQTVKVKVLSM 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 GEDGKISLSIK 74 >gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876] gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99] gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|167855135|ref|ZP_02477907.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755] gi|167853770|gb|EDS25012.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755] Length = 769 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I+D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 644 VEEISDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDV 702 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M++ D+ T K Sbjct: 703 VKVKVLEVDVARKRIALTMRLDDKPTDK 730 >gi|154294501|ref|XP_001547691.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10] gi|150844693|gb|EDN19886.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10] Length = 1220 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 5/81 (6%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674 + KIY G V V DFGAFV+ G + DGLVH+S L +RV SD+V V VK+ Sbjct: 251 LQKIYDGHVTSVKDFGAFVNIHGVKGKVDGLVHVSALVEGQRVNHPSDLVSRNQPVKVKV 310 Query: 675 LDFDDRGKIKLSMKVVDQNTG 695 + + +I LSMK VDQ TG Sbjct: 311 IKVEG-NRIGLSMKEVDQETG 330 >gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str. T04001] Length = 393 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 336 KRISLSIK 343 >gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342] gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97] gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293] gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97] gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1] gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273] gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272] gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272] gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603] gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|218896527|ref|YP_002444938.1| ribosomal protein S1 [Bacillus cereus G9842] gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222] gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842] gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 336 KRISLSIK 343 >gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames] gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor'] gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne] gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012] gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam] gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488] gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442] gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193] gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465] gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389] gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174] gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I] gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W] gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108] gi|218902709|ref|YP_002450543.1| ribosomal protein S1 [Bacillus cereus AH820] gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102] gi|227815655|ref|YP_002815664.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684] gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42] gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201] gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1] gi|229604611|ref|YP_002866001.1| ribosomal protein S1 [Bacillus anthracis str. A0248] gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066] gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North America USA6153] gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B] gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum] gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94] gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus anthracis CI] gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames] gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor'] gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne] gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam] gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488] gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193] gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442] gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389] gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465] gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174] gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I] gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W] gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108] gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820] gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102] gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684] gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1] gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201] gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42] gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248] gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum] Length = 249 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 ++ + R+DGR +R+I+ ++G+ + GS+ +G+T+ + V G E Q Sbjct: 2 NIISEHGFRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAV-YGPHEPRQR-- 58 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 + + R Y+ +T E RR + RL +A + +P+ + Sbjct: 59 NRTQEDRCTVNCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAI-LVENYPHAQI 117 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 I E+ ++DGS A V ++LAL DAGVP+ VA + DG +D+S E Sbjct: 118 DIFCELLQADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDGTP---CADVSARE 174 Query: 484 D 484 + Sbjct: 175 E 175 >gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162] Length = 358 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E VAK SDV+ G + K++DF+ Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGIDALLHVSQISREHVAKPSDVLSIGQEIQAKVVDFN 335 Query: 679 -DRGKIKLSMK 688 + KI LSMK Sbjct: 336 GEDKKISLSMK 346 >gi|321257277|ref|XP_003193532.1| pre-mRNA splicing factor [Cryptococcus gattii WM276] gi|317460002|gb|ADV21745.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276] Length = 1188 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLS 653 +++R ++ + P + KIY G + + DFGAFV G + +GLVH+S ++ Sbjct: 207 DSSRHGRPTLDERPVLYKIYNGTIANITDFGAFVTLDGVERRVNGNQRSNEGLVHVSNIT 266 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 RV D +K G V VK++ KI LSMK VDQ+TG Sbjct: 267 NGRVNSARDFLKRGQRVKVKVMTVSP--KIGLSMKDVDQDTG 306 >gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187] gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26] gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187] gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987] gi|3122814|sp|O06000|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987] gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|315652689|ref|ZP_07905664.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485067|gb|EFU75474.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 232 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E E A++ ++ D +V + +G+V + D+GAF+ GL+H+SQ+S +RV + Sbjct: 110 EKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGDGISGLLHVSQISNQRVKNPA 169 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694 V+KEG++V VK+ D GKI LS K +++N Sbjct: 170 AVLKEGESVKVKVTGIKD-GKISLSKKALEENA 201 >gi|302671391|ref|YP_003831351.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316] gi|302395864|gb|ADL34769.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316] Length = 379 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG+V ++ DFGAFV D L+H+SQ++ E V K +DV+K G V K++DF+ Sbjct: 276 VGNVVKGKVARMTDFGAFVELEPGIDALLHVSQIAKEHVEKPADVLKVGQEVEAKIVDFN 335 Query: 679 -DRGKIKLSMK 688 D KI LS+K Sbjct: 336 EDEKKISLSIK 346 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 6/98 (6%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 S + EAA+++ +I + + G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 177 SAEKAEAAKKLFDTI----KAGDVVDGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V K GDTV V L+ D KI LS K D+N K Sbjct: 232 SPKKVFKIGDTVKV-LVKSIDGSKIALSRKFDDENPWK 268 >gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILLGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407] gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407] gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis CT-43] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271] gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V S+V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3] gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579] gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4] gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171] gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579] gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4] gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537] Length = 395 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ +G V ++ DFGAF+ G DGLVH+S++S +RV +DV+ G+ V VK+L D Sbjct: 196 VGEVVEGTVARLADFGAFIDLGGV-DGLVHVSEISYDRVKNPADVLSRGEKVNVKILALD 254 Query: 679 -DRGKIKLSMK 688 ++G+I LS+K Sbjct: 255 EEKGRISLSIK 265 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V +V DFGAFV +GL+H+SQ+S +RV +DV+K GD V V++LD Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLIHVSQISHKRVENPADVLKSGDKVKVQVLDVKPAE 343 Query: 681 GKIKLSMKVVDQ 692 +I LSMK +++ Sbjct: 344 ERISLSMKALEE 355 >gi|325131120|gb|EGC53841.1| S1 RNA binding domain protein [Neisseria meningitidis OX99.30304] gi|325137143|gb|EGC59738.1| S1 RNA binding domain protein [Neisseria meningitidis M0579] Length = 757 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|218283960|ref|ZP_03489821.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989] gi|218215477|gb|EEC89015.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989] Length = 715 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676 +N +G V V+DFGAFV DGLVH+S++ST+RV SDVV GD TVWV +D Sbjct: 642 INDKLEGTVRNVVDFGAFVDIGLHEDGLVHVSKMSTKRVKHPSDVVSVGDIVTVWVYNID 701 Query: 677 FDDRGKIKLSM 687 ++ K++L+M Sbjct: 702 -QEKQKVQLTM 711 >gi|330812957|ref|XP_003291382.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum] gi|325078442|gb|EGC32093.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum] Length = 779 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 6/85 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVA--KTSDVVKEGDTVW 671 P + KIY G+V + D+G FV G RDGLVHISQ+ + RV SD VK +V Sbjct: 181 PVLYKIYNGKVSTINDYGCFVSLEGIQGRRDGLVHISQIQSGRVKLNHPSDAVKRNQSVK 240 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696 VK+L KI LSM+ VDQ +G+ Sbjct: 241 VKVLSVAG-SKISLSMRDVDQESGR 264 >gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 671 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G VV ++DFGAFV DGL+H+SQ+S + + K +D++ GD V VK+ D Sbjct: 547 EVGDTVTGHVVNLLDFGAFVRLESGVDGLLHVSQISRDHIEKPADILNIGDEVTVKVTDI 606 Query: 678 DDRG-KIKLSMKVV 690 D+ KI LS+K + Sbjct: 607 DEENKKISLSIKAL 620 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV G DGL+HIS++S R+ S+VV G+ V V++L+ D ++ Sbjct: 466 VIEGTVQRLTDFGAFVD-VGGVDGLIHISEMSWNRIKHPSEVVAPGENVEVQILNLDEEK 524 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L +K Q T +P Sbjct: 525 NRIALGLK---QTTKRP 538 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 590 DGTVKIASSSLAEIEAAREMIRSITD-VPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646 D +K A SS+ + EM+ +I + V + I +G+V+ V D V+ DG+ Sbjct: 258 DSVIKEAVSSMENFDN-NEMMEAIENSFKRVRRGEIVEGEVLYVTDNEIMVNIGYRSDGI 316 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 V +LS+ K SD+ K GDT+ V ++ DD G + LS K V+ Sbjct: 317 VSREELSSNPDVKPSDLFKPGDTIQVYVIKIDDGDGNVVLSHKRVE 362 >gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 385 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV GA DGLVHIS+LS V S+VV+EGD V V++L D + Sbjct: 192 VIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 251 GRISLSIK 258 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 DFGAFV +GLVH+SQ+S E V K SDV++ G V V++L D +R +I LSM+ Sbjct: 287 DFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMR 344 >gi|157676002|emb|CAP07842.1| putative transcriptional accessory protein [Neisseria cinerea] Length = 773 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 645 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 703 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 704 DVVKVKVLEVDAARKRIALTMRLDDE 729 >gi|315178828|gb|ADT85742.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218] Length = 526 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++D+ E+ + +G V V +FGAFV +DGLVHIS L+ V+ DVVK G Sbjct: 397 EGVNEVSDL-EIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAG 455 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 456 DIVKVKVMEVDVQRKRIALSMRLNDE 481 >gi|261349855|ref|ZP_05975272.1| protein YhgF [Methanobrevibacter smithii DSM 2374] gi|288860638|gb|EFC92936.1| protein YhgF [Methanobrevibacter smithii DSM 2374] Length = 715 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I +G V ++DFGAFV +DGL+HISQL+ + V D+V Sbjct: 633 RKNVLSIDDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLIHISQLADKFVKHPLDIVSV 691 Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687 GD V VK+LD D R +I+LSM Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713 >gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241] gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241] Length = 382 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|308388296|gb|ADO30616.1| putative transcriptional accessory protein [Neisseria meningitidis alpha710] Length = 757 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 385 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV GA DGLVHIS+LS V S+VV+EGD V V++L D + Sbjct: 192 VIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 251 GRISLSIK 258 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 DFGAFV +GLVH+SQ+S E V K SDV++ G V V++L D +R +I LSM+ Sbjct: 287 DFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMR 344 >gi|145300942|ref|YP_001143783.1| hypothetical protein ASA_4094 [Aeromonas salmonicida subsp. salmonicida A449] gi|142853714|gb|ABO92035.1| Protein yhgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 768 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 16/162 (9%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIV------EQTGAKVNIDDDGTV-KIASSS 599 E P VE I+A Q+ +++G G ++R + EQ G D G + K Sbjct: 569 ESYPVVERILAQLQQQVESLLG-NGSLLRSLKPADYTDEQFGVPTVTDIIGELDKPGRDP 627 Query: 600 LAEIEAA--REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 E + A ++ + I+D+ PE+ I +G V V +FGAFV +DGLVHIS L+ Sbjct: 628 RPEFKTATFKDGVEKISDLAPEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRF 685 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V +VVK GD V VK+L+ D R +I L+M+ +D+ G+P Sbjct: 686 VKDPREVVKAGDIVRVKVLEVDAPRKRISLTMR-LDEKAGQP 726 >gi|260770787|ref|ZP_05879716.1| transcription accessory protein [Vibrio furnissii CIP 102972] gi|260614024|gb|EEX39214.1| transcription accessory protein [Vibrio furnissii CIP 102972] Length = 769 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++D+ E+ + +G V V +FGAFV +DGLVHIS L+ V+ DVVK G Sbjct: 640 EGVNEVSDL-EIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|156082920|ref|XP_001608944.1| RNA helicase [Babesia bovis T2Bo] gi|154796194|gb|EDO05376.1| RNA helicase, putative [Babesia bovis] Length = 1156 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 6/83 (7%) Query: 622 IYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSDVVKEGDTVWVKLLD 676 I+KG+V KV++FG FV F G GLVH+S++ R+++ S+ +KE V+VK + Sbjct: 215 IFKGRVTKVVEFGGFVRFKSKNGIHSGLVHVSEILPGNRRLSEASEALKEDMVVYVKKIG 274 Query: 677 FDDRGKIKLSMKVVDQNTGKPIV 699 + KI LSMK VDQ TG+ + Sbjct: 275 MKN-DKISLSMKSVDQKTGRDLC 296 >gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC 29799] gi|150272952|gb|EDN00109.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC 29799] Length = 649 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684 +VVK+M FGAF DGL+HISQ++ R+ K DV+ EG V VK+ D D DR K+ Sbjct: 569 KVVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPGDVLSEGQMVDVKITDIDMDRKKVS 628 Query: 685 LSMKVV 690 LS++ + Sbjct: 629 LSIRAL 634 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E K Y G V + +GAFV G DG+VHIS+LS R+ S+VVK GDTV V ++ F Sbjct: 476 EEGKKYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVEVYVISF 534 Query: 678 D-DRGKIKLSMK 688 D ++ KI L MK Sbjct: 535 DKEKKKISLGMK 546 >gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741] gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741] gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713] Length = 397 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%) Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++A RE R ++ + + +G+V ++ +FGAF+ G DGLVH+S++S ERV K + Sbjct: 181 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISYERVNKPA 239 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D +K G V VK+L D ++G+I LS+K Sbjct: 240 DALKVGQEVKVKVLSVDAEKGRISLSIK 267 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ FGAFV +GLVHISQ+S + +A ++V+ G+ V VK+L D Sbjct: 286 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 345 Query: 682 -KIKLSMKVVDQNTGKPIV 699 ++ LS+K + + KP V Sbjct: 346 HRLALSIKALQE---KPAV 361 >gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC 43243] gi|217991139|gb|EEC57145.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC 43243] Length = 365 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 TD PE V + KG+V ++ DFGAFV D L+H+SQ++ E V K SDV+K G + Sbjct: 268 TDAPEKYAVGNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEI 327 Query: 671 WVKLLDFD-DRGKIKLSMKVV 690 K++D + + KI LS+K + Sbjct: 328 EAKVVDLNVEEKKISLSIKAL 348 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 10/92 (10%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A +++ SI + + +G V V DFGAF+ G DGL+HIS++S R V Sbjct: 182 EQAEKLLASIKEGDTI----EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRTENPKKV 236 Query: 664 VKEGDTV--WVKLLDFDDRGKIKLSMKVVDQN 693 K GD+V +VK + + KI LS+K DQN Sbjct: 237 FKVGDSVKAFVKEI---NGSKIALSLKYPDQN 265 >gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421] gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421] Length = 803 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676 +VN I KG+V K+ DFGAF+ +GL HIS+ S +++ K SD+VK GD V +L Sbjct: 517 QVNDIVKGRVTKITDFGAFIELSEGIEGLAHISEFSWVKKINKPSDMVKSGDEVECMILG 576 Query: 677 FD-DRGKIKLSMKVVDQN 693 +D G++ L +K V N Sbjct: 577 YDIQAGRVSLGLKQVTAN 594 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-EAAR 607 F P + + D +++G+ GK I + + N ++D V L E+ E R Sbjct: 367 FLPISQADSQKVDNPESLVGVSGKFY--IERISPNRQNRENDNIVVNRRKYLEEVTEKTR 424 Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + T++ +V +G+V FGAF+ G DGL+H++ +S V + D VK+G Sbjct: 425 DEFFQNTNIGDV---VEGRVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVMRPKDFVKKG 480 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 + + + ++ D +I LS+K Sbjct: 481 EKIKLMVIRLDMAEKRINLSLK 502 >gi|312898237|ref|ZP_07757628.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359] gi|310620734|gb|EFQ04303.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359] Length = 149 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + +G V + FGAFV + GLVHIS+++ E V D +K GD VK+L+ Sbjct: 4 EAGNVLEGIVTGITAFGAFVELPDKKVGLVHISEVANEYVKNVHDFLKVGDKTTVKVLNV 63 Query: 678 DDRGKIKLSMK 688 DDRGKI LS+K Sbjct: 64 DDRGKIGLSIK 74 >gi|309378562|emb|CBX22834.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 757 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|256005189|ref|ZP_05430157.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] gi|255990843|gb|EEU00957.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] gi|316941592|gb|ADU75626.1| Tex-like protein [Clostridium thermocellum DSM 1313] Length = 718 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVHIS+LS + V DVV GD V V++LD D +R Sbjct: 648 ILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDVER 707 Query: 681 GKIKLSMKVVD 691 +I +SMK V+ Sbjct: 708 KRISMSMKGVN 718 >gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134] gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134] Length = 382 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 336 KRISLSIK 343 >gi|167758828|ref|ZP_02430955.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704] gi|167663568|gb|EDS07698.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704] Length = 227 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + ++GAFV GLVHISQ+S +RV DV+ EG V VK++ Sbjct: 124 KVGSVLTGKVESLQNYGAFVRLEDGLSGLVHISQISQKRVKSPKDVLTEGQEVGVKIIGV 183 Query: 678 DDRGKIKLSMKVVDQNTGKPI 698 D GKI LSMK +++ +P+ Sbjct: 184 KD-GKISLSMKALEEVQEEPV 203 >gi|325201262|gb|ADY96716.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240149] gi|325207121|gb|ADZ02573.1| S1 RNA binding domain protein [Neisseria meningitidis NZ-05/33] Length = 757 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|258591883|emb|CBE68186.1| Putative transcriptional accessory protein containing S1 RNA-binding domain [NC10 bacterium 'Dutch sediment'] Length = 774 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 21/164 (12%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+A IR VIG G +R + + DD + L E+E Sbjct: 577 EAYPVVERILADIKKSIREVIG-DGNAVRALTPEK----YTDDKFGLPTVQDILTELEKP 631 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 RE + S+ D+ E + +G V V +FGAFV +DGLVH+S L+ Sbjct: 632 GRDPRPEFKTALFREGVESLMDL-ESGMMLEGIVTNVTNFGAFVDIGVHQDGLVHVSALA 690 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 + V +VK GD V VK+L+ D R +I L+M++ D+ T + Sbjct: 691 DKFVKDPHSIVKAGDVVKVKVLEVDIARKRIALTMRLSDEVTAR 734 >gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118] gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118] Length = 399 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%) Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++A RE R ++ + + +G+V ++ +FGAF+ G DGLVH+S++S ERV K + Sbjct: 183 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISYERVNKPA 241 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D +K G V VK+L D ++G+I LS+K Sbjct: 242 DALKVGQEVKVKVLSVDAEKGRISLSIK 269 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ FGAFV +GLVHISQ+S + +A ++V+ G+ V VK+L D Sbjct: 288 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 347 Query: 682 -KIKLSMKVVDQNTGKPIV 699 ++ LS+K + + KP V Sbjct: 348 HRLALSIKALQE---KPAV 363 >gi|307822523|ref|ZP_07652754.1| Tex-like protein [Methylobacter tundripaludum SV96] gi|307736127|gb|EFO06973.1| Tex-like protein [Methylobacter tundripaludum SV96] Length = 760 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I ITD+ EV G V V +FGAFV +DGLVHIS LS V D VK GD Sbjct: 639 IEKITDL-EVGMRLDGVVTNVANFGAFVDIGVHQDGLVHISHLSDTFVKDPRDAVKTGDM 697 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V VK+L+ D +R +I LSMK Sbjct: 698 VKVKVLEVDVERKRISLSMKT 718 >gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus] Length = 271 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 21/252 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 32 LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 88 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 S + R Y+ +TGE R R+ G R+ + Sbjct: 89 ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 144 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA+MDAG+P+ V + G V D L+D+S Sbjct: 145 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 200 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM--S 536 E+ G + + I ++MD ++ ++ A QA RG +H L ++ Sbjct: 201 HVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARG-VHTLLDLVVR 259 Query: 537 KVLSESRLQLGE 548 + + E+ + LG+ Sbjct: 260 QHVQEASVSLGD 271 >gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC 25986] gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC 25986] Length = 442 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 KG V V+DFGAFV +DGLVHIS+L+ V SDVV+ GDT VWV+ +D DR Sbjct: 374 KGTVRNVVDFGAFVDVGVHQDGLVHISKLANRFVKHPSDVVRVGDTVKVWVEKVD-RDRK 432 Query: 682 KIKLSM 687 KI L+M Sbjct: 433 KISLTM 438 >gi|125974456|ref|YP_001038366.1| RNA binding S1 [Clostridium thermocellum ATCC 27405] gi|281418982|ref|ZP_06250000.1| Tex-like protein-like protein [Clostridium thermocellum JW20] gi|125714681|gb|ABN53173.1| RNA binding S1 [Clostridium thermocellum ATCC 27405] gi|281407439|gb|EFB37699.1| Tex-like protein-like protein [Clostridium thermocellum JW20] Length = 718 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVHIS+LS + V DVV GD V V++LD D +R Sbjct: 648 ILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDVER 707 Query: 681 GKIKLSMKVVD 691 +I +SMK V+ Sbjct: 708 KRISMSMKGVN 718 >gi|310819429|ref|YP_003951787.1| s1 RNA binding domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309392501|gb|ADO69960.1| S1 RNA binding domain protein [Stigmatella aurantiaca DW4/3-1] Length = 778 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A RE ++++ DV E + +G V V FGAFV +DGLVH+SQLST V S+V Sbjct: 629 ALREDLKTLEDVKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQLSTRVVKDPSEVA 687 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 K GD + VK+L D R ++ LS++ V + Sbjct: 688 KVGDRLTVKVLSVDLARKRLALSVRAVQE 716 >gi|239606255|gb|EEQ83242.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ER-3] gi|327355965|gb|EGE84822.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ATCC 18188] Length = 1225 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 249 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 308 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK+ +I LSMK VDQ TG+ Sbjct: 309 PVKVKVNTIQG-ARIGLSMKEVDQVTGR 335 >gi|299821632|ref|ZP_07053520.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601] gi|299817297|gb|EFI84533.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601] Length = 382 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 6/89 (6%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A++E +E++ I + N + G+V ++ DFGAFV G DGLVH+SQ+S + K Sbjct: 173 AKLEQKKEVLEKIHE----NDVLTGKVARLADFGAFVDLGGV-DGLVHVSQISYSHIDKP 227 Query: 661 SDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688 S+V++EG V VK+L D +I LS+K Sbjct: 228 SEVLEEGQEVKVKVLSVDKANERISLSIK 256 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+VV+++ FGAFV +GLVHISQ++ + + +V+KEG V VK+LD + D Sbjct: 275 VLSGKVVRLVSFGAFVEVAPGVEGLVHISQIAHKHIGTPQEVLKEGQEVEVKVLDVNLDE 334 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K + ++ Sbjct: 335 KRLSLSIKALQED 347 >gi|121713496|ref|XP_001274359.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus clavatus NRRL 1] gi|119402512|gb|EAW12933.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus clavatus NRRL 1] Length = 1231 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 5/87 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHIS-QLSTERVAKTSDVVKEGD 668 + D P + KIY G V V DFGAFV+ G + DGLVH+S L RV SD+V G Sbjct: 255 LDDQPILYKIYDGVVTGVKDFGAFVNLKGVKGKVDGLVHVSAMLEGARVNHPSDLVSRGQ 314 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695 V VK++ +I LSMK VDQ TG Sbjct: 315 PVKVKVISIQG-SRIGLSMKEVDQVTG 340 >gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4] gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4] Length = 391 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 6/97 (6%) Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +EAAR+ RS I D + KG V ++DFGAFV G DGL+HIS+LS V + S Sbjct: 189 LEAARKAERSEILDKLKPGMKLKGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNQPS 247 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 +VVK G V V++LD D +R +I L +K Q T P Sbjct: 248 EVVKVGQEVEVQVLDVDLNRERISLGLK---QTTEDP 281 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + I +G+V K++ FGAFV +GLVHIS++S + V + V K GDTV VK+++ D Sbjct: 291 IGAIIEGKVTKLVTFGAFVDLGDGVEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVD 350 Query: 679 -DRGKIKLSMKVVDQNTGK 696 +R +I LSMK + G+ Sbjct: 351 LERRRISLSMKAAAETLGQ 369 >gi|261188658|ref|XP_002620743.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081] gi|239593101|gb|EEQ75682.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081] Length = 1213 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668 + D P + KIY G+V + DFGAFV+ G + DGLVH+S + RV SD+V +G Sbjct: 249 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 308 Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V VK+ +I LSMK VDQ TG+ Sbjct: 309 PVKVKVNTIQG-ARIGLSMKEVDQVTGR 335 >gi|225027431|ref|ZP_03716623.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353] gi|224955258|gb|EEG36467.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353] Length = 628 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682 G+V ++ DFGAFV D L+H+SQ++ E + K SDV+K G V K++DF DDR K Sbjct: 559 GKVARMTDFGAFVELEPGVDALLHVSQIAKEHIEKPSDVLKVGQEVTAKVVDFKKDDR-K 617 Query: 683 IKLSMKVVDQ 692 I LS+K +D Sbjct: 618 ISLSIKALDN 627 Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAF+ GA DGL+HIS++S RV V G+ + V + D KI Sbjct: 475 EGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFTVGEKLNVLIKDIQGE-KI 532 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 533 ALSLKFPETN 542 >gi|123430773|ref|XP_001307952.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3] gi|121889607|gb|EAX95022.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3] Length = 125 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V KV FGAFV + GLVHIS+++ V ++ + EGD V VK+L D+RG Sbjct: 8 IVEGVVTKVAKFGAFVDLKDGKSGLVHISEIADTFVKNINNHISEGDEVKVKVLSIDERG 67 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 68 KIALSIK 74 >gi|121999024|ref|YP_001003811.1| RNA-binding S1 domain-containing protein [Halorhodospira halophila SL1] gi|121590429|gb|ABM63009.1| RNA binding S1 domain protein [Halorhodospira halophila SL1] Length = 798 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A RE + I D+ E + +G V V +FGAFV +DGLVHIS L+ E V D V Sbjct: 649 AFREGVEKIQDL-EPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISALAHEFVRDPRDKV 707 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 + GD V VK+++ D +R +I LSM++ D Sbjct: 708 RTGDVVQVKVMEVDLERQRIGLSMRLDD 735 >gi|325262655|ref|ZP_08129392.1| 40S ribosomal protein S1 [Clostridium sp. D5] gi|324032487|gb|EGB93765.1| 40S ribosomal protein S1 [Clostridium sp. D5] Length = 231 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 5/92 (5%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E +A E I SI + + +G V + ++GAF+ GLVHISQ+S +R+ Sbjct: 116 EQQARAEQIASI----KTGTVMEGTVETLQNYGAFIKLDNGLSGLVHISQISQKRIKTPG 171 Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 +V+K GDTV VK++ + GKI LSMK +++N Sbjct: 172 EVLKVGDTVKVKVIGIKE-GKISLSMKALEEN 202 >gi|254673894|emb|CBA09677.1| putative transcription accessory protein [Neisseria meningitidis alpha275] Length = 757 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D R +I L+M++ D+ G Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716 >gi|325678555|ref|ZP_08158166.1| S1 RNA binding domain protein [Ruminococcus albus 8] gi|324109774|gb|EGC03979.1| S1 RNA binding domain protein [Ruminococcus albus 8] Length = 159 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KIY+G+V + FGAFV G+VHIS+++ V + D ++EG TV VK+L Sbjct: 4 EVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVNEIKDHLQEGQTVKVKVLSL 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 GEDGKISLSIK 74 >gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 313 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E+E + +I+ + E + +G V ++ DFGAFV+ G DGLVHISQ+S Sbjct: 96 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 153 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ERV + S+V+++G V VK+L D D +I LS+K Sbjct: 154 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 188 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 207 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 266 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 267 KRISLSIK 274 >gi|255066133|ref|ZP_05317988.1| protein YhgF [Neisseria sicca ATCC 29256] gi|255049678|gb|EET45142.1| protein YhgF [Neisseria sicca ATCC 29256] Length = 756 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ +V I +G V V +FGAFV +DGLVHIS LS V +VVK G Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|187777235|ref|ZP_02993708.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC 15579] gi|187774163|gb|EDU37965.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC 15579] Length = 718 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G V V DFGAFV +DGLVHISQLS V DVVK GD V V++L+ D R Sbjct: 650 ILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDQKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 NRISLSMK 717 >gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 687 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+VV ++DFGAFV +GLVH+S++S E V K SD + GD + VK++ Sbjct: 549 EVGDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISI 608 Query: 678 D-DRGKIKLSMKVVDQNTGKP 697 D + K+ LS+K + + +P Sbjct: 609 DKEEEKVGLSIKALKEAPERP 629 >gi|254362451|ref|ZP_04978560.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] gi|153094040|gb|EDN74956.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] Length = 774 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 644 VEEITDL-KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDV 702 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M++ D+ T K Sbjct: 703 VKVKVLEVDAARKRIALTMRLDDKPTDK 730 >gi|310642586|ref|YP_003947344.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2] gi|309247536|gb|ADO57103.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2] Length = 408 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE EA + ++ + ++ E +I G V ++ FGAFV G DGLVH+S+++ V K Sbjct: 184 AEFEANK--LKVMAELKEGQEIV-GTVQRLTQFGAFVDVGGV-DGLVHVSEIAWTHVDKP 239 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SD V EGD V VK+L D ++GKI LSMK Sbjct: 240 SDAVSEGDQVKVKVLKVDPEKGKISLSMK 268 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 N I G V ++++FGAFV +GLVHISQ+S + + +V++EG V VK+L+ + Sbjct: 285 NDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILEMNP 344 Query: 680 RGK-IKLSMKVVDQ 692 K + LS+K ++ Sbjct: 345 SEKRVSLSIKETEE 358 >gi|308069530|ref|YP_003871135.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681] gi|305858809|gb|ADM70597.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681] Length = 408 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE EA + ++ + ++ E +I G V ++ FGAFV G DGLVH+S+++ V K Sbjct: 184 AEFEANK--LKVMAELKEGQEIV-GTVQRLTQFGAFVDVGGV-DGLVHVSEIAWTHVDKP 239 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SD V EGD V VK+L D ++GKI LSMK Sbjct: 240 SDAVSEGDQVKVKVLKVDPEKGKISLSMK 268 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 N I G V ++++FGAFV +GLVHISQ+S + + +V++EG V VK+L+ + Sbjct: 285 NDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILEMNP 344 Query: 680 RGK-IKLSMKVVDQ 692 K + LS+K ++ Sbjct: 345 SEKRVSLSIKETEE 358 >gi|261494117|ref|ZP_05990620.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496042|ref|ZP_05992452.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308292|gb|EEY09585.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310283|gb|EEY11483.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 774 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 644 VEEITDL-KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDV 702 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M++ D+ T K Sbjct: 703 VKVKVLEVDAARKRIALTMRLDDKPTDK 730 >gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501] gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501] Length = 718 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G++ V+DFGAFV DGLVHIS++S+E V +VVK GD V +K+L+ D R Sbjct: 650 ILQGEIRNVVDFGAFVDIGVKEDGLVHISEMSSEYVEDPFEVVKVGDVVKIKILEIDSAR 709 Query: 681 GKIKLSM 687 +I L+M Sbjct: 710 KRIALTM 716 >gi|254520236|ref|ZP_05132292.1| RNA binding S1 domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913985|gb|EEH99186.1| RNA binding S1 domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 382 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I G+VVK ++FGAFV +GLVHI++++ E +AK SDV+K G V VK+LD D Sbjct: 284 ILDGKVVKFLNFGAFVEIFPGVEGLVHINEITDENIAKPSDVLKLGQNVKVKVLDVDKTN 343 Query: 682 K-IKLSMK 688 K I L++K Sbjct: 344 KRISLTIK 351 Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G V K++ GA V G GL+H++ LS R+ + DVV GD V V + + D + ++ Sbjct: 202 GVVKKIIKAGAIVDIGGIT-GLIHLNDLSWSRIHRAEDVVNIGDKVEVFIGEVDVKNERV 260 Query: 684 KLSMKVVDQN 693 L +K +DQ+ Sbjct: 261 SLILKDIDQD 270 >gi|169839094|ref|ZP_02872282.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7 single-cell isolate TM7a] Length = 43 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 33/40 (82%) Query: 68 YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY 107 YA GK PGG+++RE++P +EILISR+IDR IRPLF + + Sbjct: 3 YASGKFPGGFIKRETKPGTDEILISRLIDRPIRPLFPEGF 42 >gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893] gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893] Length = 776 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS V +VVK GD V VK++D D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPREVVKAGDIVKVKVMDVDIPR 712 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ DQ Sbjct: 713 KRIALSMRMDDQ 724 >gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum WAL-14673] Length = 337 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 604 EAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 EAARE + R I EV I G V + +GAF+ GLVHISQ+S++R+ Sbjct: 216 EAAREKLQEEKKRRIAKC-EVGVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIP 274 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S V+KEG V VK++ D KI LSMK V+ N Sbjct: 275 HPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEAN 308 >gi|168698087|ref|ZP_02730364.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246] Length = 546 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 29/245 (11%) Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGI----SENIMVMALQQAKRGR 528 ++ + ++G + + +VAG + A Q+D+ ++ + + + VM + R Sbjct: 254 VVEAKVTGTNKNKTGLTIEVAGIKGFLPASQLDLYRVENVDQFVGQRLKVMVSEVNPEER 313 Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG-------IVEQT 581 I++ + + E +++ EF VE + +R+V G V G + E + Sbjct: 314 NLIVSRRAVLEREKQVKAEEFWRTVEKDQVRKGIVRSVKPFGAFVDLGGADGLIPVSEFS 373 Query: 582 GAKVNIDDDGTVKIASSSLAEIEA----AREM---IRSITDVP--EVNKIYK------GQ 626 +VN D + VKI +I AR++ +R++T P E K + G+ Sbjct: 374 WQRVN-DLNEVVKIGQEVEVKISKIDFEARKIGLSMRALTTSPFEEFTKTTQAGARVTGK 432 Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685 V ++ DFGAFV +GL+H+S+LST+RV + SDV++ G V V++L D K I L Sbjct: 433 VSRLADFGAFVELAPGLEGLIHVSELSTQRVRRVSDVIEPGQNVIVEILSTDPVTKRIAL 492 Query: 686 SMKVV 690 S+K + Sbjct: 493 SLKKI 497 >gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163] gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163] Length = 337 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 604 EAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 EAARE + R I EV I G V + +GAF+ GLVHISQ+S++R+ Sbjct: 216 EAAREKLQEEKKRRIAKC-EVGVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIP 274 Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 S V+KEG V VK++ D KI LSMK V+ N Sbjct: 275 HPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEAN 308 >gi|313901827|ref|ZP_07835249.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467909|gb|EFR63401.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM 13965] Length = 558 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V + DFGAF+ G DGL+H+S++ R+ D++KEGDT+ VK+L Sbjct: 344 EEGQVRTGVVKGLTDFGAFIDLGGV-DGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLKV 402 Query: 678 D-DRGKIKLSMK 688 D +RG+I LS+K Sbjct: 403 DRERGRISLSLK 414 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V KG VV+++ FGAFV +GLVHISQL+ RV +VV EG V V++L Sbjct: 430 VGATVKGTVVRLVPFGAFVRLEPGVEGLVHISQLADHRVESPDEVVHEGQEVEVRVLRVQ 489 Query: 679 -DRGKIKLSMK 688 + +I LSM+ Sbjct: 490 PEERRISLSMR 500 >gi|260587822|ref|ZP_05853735.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia hansenii DSM 20583] gi|331083824|ref|ZP_08332933.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542087|gb|EEX22656.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia hansenii DSM 20583] gi|330403249|gb|EGG82809.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G++ ++ DFGAF+ D L+H+SQ+S V K SDV+K G V K++DF+ Sbjct: 276 VGNVVEGKIARMTDFGAFIELEPGVDALLHVSQISRAHVEKPSDVLKVGQVVTAKVVDFN 335 Query: 679 -DRGKIKLSMKVVD 691 + KI LSMKV++ Sbjct: 336 EEEKKISLSMKVLE 349 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 6/88 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EM + + + + +G + V DFGAF+ GA DGL+HIS++S RV V K G Sbjct: 182 EMKKELFERIHAGDVVEGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKAG 240 Query: 668 D--TVWVKLLDFDDRGKIKLSMKVVDQN 693 + TV +K ++ D KI LS+K DQN Sbjct: 241 EKITVLIKEINGD---KIALSLKFEDQN 265 >gi|262166725|ref|ZP_06034462.1| transcription accessory protein [Vibrio mimicus VM223] gi|262026441|gb|EEY45109.1| transcription accessory protein [Vibrio mimicus VM223] Length = 773 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGMVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVKRKRIALSMRLNDE 724 >gi|157676012|emb|CAP07847.1| putative transcriptional accessory protein [Neisseria iguanae] Length = 764 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ +V I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGIHEIKDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|295696379|ref|YP_003589617.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912] gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912] Length = 383 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G+V ++ +FGAFV G DGLVHIS+L+ RV S+VVKEGD V VK+L D +R Sbjct: 191 IITGKVQRLTNFGAFVDVGGV-DGLVHISELAWHRVEHPSEVVKEGDEVTVKVLKVDPER 249 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 250 ERVSLSIK 257 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V +++ FGAFV +GLVHISQ++ R+ +V++ G V VK+LD + Sbjct: 273 VGDVVTGTVRRLVSFGAFVELEPGVEGLVHISQIANRRIGTPQEVLEPGQEVRVKILDVN 332 Query: 679 DRG-KIKLSMK 688 + +I LS++ Sbjct: 333 EEDQRISLSIR 343 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 610 IRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 +R +TD+ ++K + KG++ K+ D FV DG++ I +LS RV SDVV+ G Sbjct: 4 MRDMTDLVALHKGDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVVQVG 63 Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691 D V V++ +D GK+ LS K VD Sbjct: 64 DEVEVRVQRINDEEGKLVLSKKAVD 88 >gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469] gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469] Length = 253 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 23/204 (11%) Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 + +R R + +R ++ + L++ GS L GDT+ + T+ E+ V + Sbjct: 14 QPLRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATI-----EEGVPAWRRA 68 Query: 370 QRNDFMM-HYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 R ++ Y LP +T + ++ +R R + RL R++ V+ YT+ + Sbjct: 69 SRAGWVTAEYAMLPASTNQRTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLD 128 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL DA +P++ VA I+MG+V D + Sbjct: 129 CDVLQADGGTRTASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVV----DGQV 184 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 L D+ ED +D + GT+SG Sbjct: 185 LLDLDYPEDSHADIDMNLVGTESG 208 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 RP+ LE + + +DG+ L ++G+T VL ++++G + T + Sbjct: 27 RPVTLERN-LMKNADGSCLVSFGDTRVLCAA----TIEEGVPAWRRASRAGWVTAEYAML 81 Query: 74 PGGYLRRESRPTENE----ILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESSPH 127 P +R R N + I R+I RS+R + E + ++ V+Q D Sbjct: 82 PASTNQRTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQAD--GGTR 139 Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175 S+ A AL +LS LP G V + ++GQ +L+ ED +D Sbjct: 140 TASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVVDGQVLLDLDYPEDSHADID 199 Query: 176 LFVSGTQ 182 + + GT+ Sbjct: 200 MNLVGTE 206 >gi|325510251|gb|ADZ21887.1| Transcription accessory protein TEX, RNA-binding protein containing S1 domain [Clostridium acetobutylicum EA 2018] Length = 724 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V DVVK GD V V++L+ D+ R +I Sbjct: 659 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDEKRNRI 718 Query: 684 KLSMK 688 L+MK Sbjct: 719 SLTMK 723 >gi|315503018|ref|YP_004081905.1| tex-like protein protein-like protein [Micromonospora sp. L5] gi|315409637|gb|ADU07754.1| Tex-like protein protein-like protein [Micromonospora sp. L5] Length = 827 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 40/217 (18%) Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559 G++ENI+ L + G E+ KV RL F + IP Sbjct: 530 AGLAENIV---LHRDANGPFRTRTELKKV---PRLGPKAFEQCAGFLRIPGGDDPLDSSS 583 Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606 P+ +R ++ G+ +R ++ ++ A +DD + + LAE+E Sbjct: 584 VHPEAYPVVRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 643 Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 R R+ T V V KI +G V V FGAFV +DGLVH+S +S Sbjct: 644 DPRPEFRTATFVEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTF 703 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 V DVVK GD V V++LD D R +I L++++ D+ Sbjct: 704 VKDPRDVVKSGDVVKVRVLDVDVPRKRISLTLRLDDE 740 >gi|269926456|ref|YP_003323079.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 431 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG+V + DFGAFV GA DGL+H+S++S R+ S+V+K GD V V +L+ D + Sbjct: 261 QIVKGRVTSLADFGAFVDIGGA-DGLIHLSEISWGRINHPSEVLKPGDEVDVMVLNIDRE 319 Query: 680 RGKIKLSMK 688 KI LSMK Sbjct: 320 HKKIALSMK 328 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 8/76 (10%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +I +G+V ++ FG FV +GLVH+S+L + V+ GD + ++++ Sbjct: 343 DVGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSELGDTK-------VQVGDKLRLRVIKM 395 Query: 678 D-DRGKIKLSMKVVDQ 692 D R +I LS++ +D+ Sbjct: 396 DTQRRRIGLSVRQLDE 411 >gi|220927810|ref|YP_002504719.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10] gi|219998138|gb|ACL74739.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10] Length = 718 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVHISQL+ + V DVV GD V VK+L+ D +R Sbjct: 648 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNPMDVVAVGDIVKVKILEVDVER 707 Query: 681 GKIKLSMKVVD 691 +I L+MK ++ Sbjct: 708 KRISLTMKEIN 718 >gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644] gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644] Length = 395 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 2/79 (2%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +++ D V + +G+V ++ +FGAF+ G DGLVH+S++S ERV K SDV+K G V Sbjct: 188 KAVLDKLVVGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISFERVGKPSDVLKVGQDV 246 Query: 671 WVKLLDFD-DRGKIKLSMK 688 VK+L D ++ +I LS+K Sbjct: 247 KVKVLAVDPEKDRISLSIK 265 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ FGAFV +GLVHISQ+S + +A ++V+ G+ V VK+L+ + + Sbjct: 284 VLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEE 343 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K + + Sbjct: 344 HRLALSIKALQEK 356 >gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001] gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1] gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG] gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705] gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001] gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1] gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG] gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705] gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG] Length = 436 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 6/89 (6%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ EA +E+ I + + +G+V ++ +FGAFV G DGLVH+S++S + V K Sbjct: 188 SKAEARKEIFAKI----QPGDVVEGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKP 242 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SDV+K G + VK+L+ D DR +I LS+K Sbjct: 243 SDVLKVGQEIKVKVLNVDPDRNRISLSIK 271 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S E VA +DV+KEG V VK+L D D Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDA 349 Query: 681 GKIKLSMKVV 690 ++ LS+K + Sbjct: 350 HRLALSIKAL 359 >gi|15896097|ref|NP_349446.1| transcription accessory protein [Clostridium acetobutylicum ATCC 824] gi|15025886|gb|AAK80786.1|AE007781_9 Transcription accessory protein TEX, RNA-binding protein containing S1 domain [Clostridium acetobutylicum ATCC 824] Length = 718 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V DVVK GD V V++L+ D+ R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDEKRNRI 712 Query: 684 KLSMK 688 L+MK Sbjct: 713 SLTMK 717 >gi|295107401|emb|CBL04944.1| Transcriptional accessory protein [Gordonibacter pamelaeae 7-10-1-b] Length = 718 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 6/81 (7%) Query: 610 IRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 IRS D VP + G V V+DFGAFV +DGLVH+S+L+ V S+VV GD Sbjct: 636 IRSFDDLVPGME--LTGTVRNVVDFGAFVDIGVKQDGLVHVSKLADRFVRHPSEVVAVGD 693 Query: 669 --TVWVKLLDFDDRGKIKLSM 687 TVWV +D DRGKI LSM Sbjct: 694 TVTVWVTAVD-KDRGKISLSM 713 >gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] Length = 243 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR +R+ ++G+ + HGSS G+T+ + V E Y+ S ++ Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNV---NGPSEPYIKGKSKQEK 69 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRR----EIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 + NF P + + + +R + R +AI L +Q +L ++ Sbjct: 70 AFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL- 128 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E DG + + ++LAL+DAG+ + V G+ + ++L + +E + Sbjct: 129 ---EDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIYETQ---VLLDLNTNEESDIS 182 Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 M V GT +T ++ + K +S ++ AL A G HI +M KV+ +S Sbjct: 183 WMTVGVLGTKGKVTYLKQETK---LSLDLFEPALTTAIAGCDHIALQMQKVVRQS 234 >gi|293374966|ref|ZP_06621261.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909] gi|325843363|ref|ZP_08167946.1| putative ribosomal protein S1 [Turicibacter sp. HGF1] gi|292646376|gb|EFF64391.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909] gi|325489392|gb|EGC91765.1| putative ribosomal protein S1 [Turicibacter sp. HGF1] Length = 559 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 14/141 (9%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613 EI +P +++ + + + +V +++ G K+ + + ++ Sbjct: 230 EISHLPVEKVEDALTVNQEVSAKVIKVEGTKIQLSIKAVLPTPFEQFVQVHHE------- 282 Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 N++ +G VV++ +FGAFV +GLVH+S+LS + AK +VV EG V V+ Sbjct: 283 ------NEVLEGTVVRLTEFGAFVELAKGVEGLVHLSELSWDHKAKLEEVVSEGQKVQVR 336 Query: 674 LLDFDDR-GKIKLSMKVVDQN 693 ++ D + +I LS+K V+Q+ Sbjct: 337 IILLDKKHNRIGLSLKKVEQD 357 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+VV++ FGAFV F GA +GLVHIS++S V K D + V K++ + Sbjct: 199 VGDIVTGKVVRLEKFGAFVRF-GALEGLVHISEISHLPVEKVEDALTVNQEVSAKVIKVE 257 Query: 679 DRGKIKLSMKVV 690 KI+LS+K V Sbjct: 258 GT-KIQLSIKAV 268 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +P VN I +G VV+V + V GA +G +++++L+ ++V DVVK GDT+ Sbjct: 25 LPSVNDIVEGVVVRVSNQEVTVDIGGATEGTIYLNELTLDKVESAKDVVKVGDTI 79 >gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 259 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 25/203 (12%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR+ +R I + GS L G+T+ I ++ +++ GT + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT EV++ G PS R + RL R++ V+ T+ I Sbjct: 59 WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ GS +AL DA +P+ VA +++G+V DG+ + Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-DGNKLL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+S ED +D V TD G Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKG 196 >gi|209693812|ref|YP_002261740.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238] gi|208007763|emb|CAQ77882.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238] Length = 778 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + +++D+ E+ I +G V V +FGAFV +DGLVHIS LS V+ +VVK GD Sbjct: 639 VNTVSDL-ELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I L+M++ DQ Sbjct: 698 VKVKVMEVDAQRKRIALTMRLNDQ 721 >gi|308047928|ref|YP_003911494.1| Tex-like protein [Ferrimonas balearica DSM 9799] gi|307630118|gb|ADN74420.1| Tex-like protein [Ferrimonas balearica DSM 9799] Length = 775 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A E + ++D+ E + +G V V +FGAFV +DGLVHIS LS + V Sbjct: 634 ETAAFAEGVEKVSDL-EPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFVEDPR 692 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 VVK GD V VK+++ D R +I LSM++ DQ Sbjct: 693 TVVKAGDVVKVKVMEVDVPRQRIGLSMRLDDQ 724 >gi|299144362|ref|ZP_07037442.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518847|gb|EFI42586.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 680 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G+VV +++FGAF+ DGL+H+SQ+S E V K +D + G+ V VK+ D Sbjct: 552 QVGDVVEGKVVNLLEFGAFIRLESGVDGLLHVSQISKEHVEKPADKLTMGEEVTVKITDI 611 Query: 678 DDRG-KIKLSMKVV 690 D+ KI LSMK + Sbjct: 612 DEENKKISLSMKAL 625 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 8/97 (8%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E+EA R +S+ + + + +G V ++ +FGAF+ G DGL+HIS+LS RV + Sbjct: 454 ELEAKR---KSVYESLQEGDVIEGTVQRLTNFGAFIDLGGV-DGLIHISELSWNRVKHPA 509 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 DVV G V V++L D ++ +I L +K Q T KP Sbjct: 510 DVVAPGQKVEVQVLTVDEEKNRIALGLK---QTTKKP 543 >gi|23005787|ref|ZP_00048431.1| COG2183: Transcriptional accessory protein [Magnetospirillum magnetotacticum MS-1] Length = 125 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R Sbjct: 7 LEGVVTNVAAFGAFVEIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAVDVPRK 66 Query: 682 KIKLSMKVVDQNTGKP 697 +I LSM++ D G P Sbjct: 67 RISLSMRLDDPIDGTP 82 >gi|183597001|ref|ZP_02958494.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827] gi|188023656|gb|EDU61696.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827] Length = 777 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK++D D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVMDVDIPR 711 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ +Q Sbjct: 712 KRIALSMRLDEQ 723 >gi|50289563|ref|XP_447213.1| hypothetical protein [Candida glabrata CBS 138] gi|49526522|emb|CAG60146.1| unnamed protein product [Candida glabrata] Length = 1135 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 8/72 (11%) Query: 631 MDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 M FG FV CG +GLVHIS+L +V SDVVK+G TV+VK+ GKI Sbjct: 192 MPFGCFVQILHLKKECG--EGLVHISELCKNKVRHPSDVVKQGQTVYVKISKIMTNGKIS 249 Query: 685 LSMKVVDQNTGK 696 LSM +DQ +GK Sbjct: 250 LSMINIDQVSGK 261 >gi|291560699|emb|CBL39499.1| Ribosomal protein S1 [butyrate-producing bacterium SSC/2] Length = 232 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V +M +GAFV GLVHISQLS +RV +VVKEGD V VK++ Sbjct: 127 VGTVVEGTVENIMPYGAFVDIGDGISGLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVA 186 Query: 679 DRGKIKLSMKVVDQN 693 + GK+ LS+K ++ + Sbjct: 187 N-GKVSLSIKALEDD 200 >gi|304315782|ref|YP_003850927.1| RNA binding S1 domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777284|gb|ADL67843.1| RNA binding S1 domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V ++ +G V+ + DFGAFV + GLVHIS+++ V ++ +KE D V VK+L Sbjct: 4 QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DKGGRISLSIK 74 >gi|317121948|ref|YP_004101951.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM 12885] gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM 12885] Length = 598 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V + DFGAF+ G DGL+H+S++ R+ D++KEGDT+ VK+L Sbjct: 380 EEGQVRTGVVKGLTDFGAFIDLGGV-DGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLRV 438 Query: 678 D-DRGKIKLSMK 688 D +RG+I LS+K Sbjct: 439 DRERGRISLSLK 450 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V KG VV+++ FGAFV +GLVHISQL+ RV +VV+EG V V++L Sbjct: 466 VGATVKGTVVRLVPFGAFVRLEPGVEGLVHISQLADHRVESPDEVVQEGQQVEVRVLRVQ 525 Query: 678 -DDRGKIKLSM 687 +DR +I LSM Sbjct: 526 PEDR-RISLSM 535 >gi|255327380|ref|ZP_05368454.1| protein YhgF [Rothia mucilaginosa ATCC 25296] gi|255295660|gb|EET75003.1| protein YhgF [Rothia mucilaginosa ATCC 25296] Length = 835 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V FGAFV +DGLVHISQ+S VA D+V+ GD V V++++ D R Sbjct: 763 VLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVQVRVVEVDPVR 822 Query: 681 GKIKLSMKVVDQN 693 +I LS+ V D+N Sbjct: 823 RRISLSLLVEDEN 835 >gi|168182214|ref|ZP_02616878.1| RNA-binding protein [Clostridium botulinum Bf] gi|237793495|ref|YP_002861047.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674704|gb|EDT86665.1| RNA-binding protein [Clostridium botulinum Bf] gi|229263673|gb|ACQ54706.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 718 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|327485186|gb|AEA79593.1| Transcription accessory protein (S1 RNA-binding domain) [Vibrio cholerae LMA3894-4] Length = 773 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724 >gi|255284500|ref|ZP_05349055.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella formatexigens DSM 14469] gi|255264957|gb|EET58162.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella formatexigens DSM 14469] Length = 361 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G+V ++ DFGAFV D L+H+SQ+S E V K SDV+K G + K++DF+ + Sbjct: 276 IVTGRVARMTDFGAFVELEPGVDALLHVSQISHEHVDKPSDVLKVGQQIEAKVVDFNEEE 335 Query: 681 GKIKLSMKVVDQNT 694 KI LSMK ++ + Sbjct: 336 KKISLSMKALENTS 349 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EM +++ + V + +G V + DFGAFV GA DGL+HIS++S RV + G Sbjct: 179 EMQKALFERIHVGDVVEGVVKNITDFGAFVDLGGA-DGLLHISEMSWGRVDNPRKLFNVG 237 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693 D + V L D + KI LS+K D+N Sbjct: 238 DKLKVLLKDINGN-KIALSLKFEDEN 262 >gi|108763761|ref|YP_631975.1| 30S ribosomal protein S1 [Myxococcus xanthus DK 1622] gi|108467641|gb|ABF92826.1| ribosomal protein S1 [Myxococcus xanthus DK 1622] Length = 570 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681 KG+V KV DFGAFV +GLVH+S+L ERV DVV+E V VK++D + DR Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELKEERVENPRDVVQEAQDVEVKIIDINTPDR- 529 Query: 682 KIKLSMKVV 690 K+ LSMK + Sbjct: 530 KVALSMKAL 538 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+VV + D+GAF+ +GLVH+S++S T+R+ S +++ G V +LD D + K Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356 Query: 683 -IKLSMKVVDQN 693 I L MK ++QN Sbjct: 357 RIALGMKQIEQN 368 Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E ++++ + + KG V + D+GAF+ G DGL+HI+ +S R+ S++ Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 GD V V +L FD + ++ L +K + ++ Sbjct: 251 FNVGDEVRVVVLKFDPTQERVSLGLKQIQED 281 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 + + KGQ+ V DFG FV DGLVH+S +S T R+ ++ K+GD V +L+ Sbjct: 379 IGSVIKGQIRNVTDFGVFVGVEEGVDGLVHVSDISWTVRIKHPGEMFKKGDEVEAVVLNI 438 Query: 678 D 678 D Sbjct: 439 D 439 >gi|261344527|ref|ZP_05972171.1| protein YhgF [Providencia rustigianii DSM 4541] gi|282567440|gb|EFB72975.1| protein YhgF [Providencia rustigianii DSM 4541] Length = 776 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+LD D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIPR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus] gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus] gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus] gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus] gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus] Length = 245 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 21/252 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA+MDAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM--S 536 E+ G +A I ++MD ++ ++ A QA RG +H L ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARG-VHTLLDLVVR 233 Query: 537 KVLSESRLQLGE 548 + + E+ + LG+ Sbjct: 234 QHVQEASVSLGD 245 >gi|134299017|ref|YP_001112513.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051717|gb|ABO49688.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum reducens MI-1] Length = 672 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I+ +VV++ FGAFV +GLVHIS L+ V K DVVKEG+ V VK+L D Sbjct: 555 VGNIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMD 614 Query: 679 DRGK-IKLSMKVVD 691 K ++LS++ V+ Sbjct: 615 PSEKRVRLSIREVN 628 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 3/102 (2%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ ++ E + AR+ + + E +I KG V ++ +FGAFV G DGL+HIS++ Sbjct: 445 VVVSRKAVLEEQNARKREELLASLQE-GQIVKGIVRRITNFGAFVDL-GGLDGLLHISEM 502 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693 S R+ +VVK GD + V +L D + KI L +K V N Sbjct: 503 SWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPN 544 >gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 480 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N +YKGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 205 LNNLYKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L+ D DR ++ LS+K ++ Sbjct: 264 ILEVDLDRERVSLSLKATQED 284 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+LS + V VV G+ V+VK++D D Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKVIDID 354 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 355 LERRRISLSLKQANE 369 >gi|229527358|ref|ZP_04416750.1| transcription accessory protein [Vibrio cholerae 12129(1)] gi|229334990|gb|EEO00475.1| transcription accessory protein [Vibrio cholerae 12129(1)] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724 >gi|153825500|ref|ZP_01978167.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149740785|gb|EDM54876.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana] gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana] gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana] Length = 241 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 22/242 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R I A+VG++ + GS++F G+T+ I V G RE + + S ++ Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPRE----IQNKSQQKK 63 Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 ND + Y+ +TG+ R RR + R+ + + T P++ + I Sbjct: 64 NDHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACI-LTELMPHSQIDIFL 121 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 ++ ++DG + A + ++LAL DAG+P+ + G + L D++ ED G Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVEDSAG 177 Query: 488 HMDFKVAGTDS--GITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSKVLSESRL 544 D V ++ +QMD K+ + E + +A + K I + +VL E+ Sbjct: 178 GADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCK----AIAERIREVLQENTK 233 Query: 545 QL 546 QL Sbjct: 234 QL 235 >gi|317128562|ref|YP_004094844.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473510|gb|ADU30113.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522] Length = 382 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 6/88 (6%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E E R+ + SI +V + +G+V ++ DFGAFV G DGLVHISQ++ V S Sbjct: 175 ENEKKRKTLTSI----QVGDVLEGKVQRLTDFGAFVDIGGV-DGLVHISQMAHHHVDAPS 229 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +VV EGD + VK+L D D +I LS+K Sbjct: 230 EVVSEGDQIKVKVLGVDPDNERISLSIK 257 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V +++ FGAFV +GLVHISQ++ + +V+KEG+ V K+LD + Sbjct: 274 VIEGKVKRLVSFGAFVEVADGVEGLVHISQIANRHIGTPGEVLKEGENVSAKVLDVNLAD 333 Query: 682 K-IKLSMKVV 690 K I LS++ + Sbjct: 334 KRISLSIRAI 343 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 607 REMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 EM + DV V + G + KV + AFV+ DG++ IS+LS+ V + SDV+ Sbjct: 3 EEMNNEMADVKSFSVGETVIGTITKVEEKQAFVNVGYKMDGIIPISELSSLHVEQVSDVL 62 Query: 665 KEGDTVWVKLLDFDD 679 EGD V ++++ D Sbjct: 63 SEGDEVELQIIKSTD 77 >gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305] gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105] gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305] gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105] Length = 493 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I +G+V K++ FG FV +GL+HIS+L+ V VVK G+T++VK Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETIFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G + +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QVREGTISSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|291563829|emb|CBL42645.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4] Length = 359 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E VAK +DV+ G + K++DF+ Sbjct: 276 VGNVVTGKVARMTDFGAFVELEPGVDALLHVSQISREHVAKPADVLSIGQEITAKIVDFN 335 Query: 679 --DRGKIKLSMKVVDQNT 694 DR KI LSMK ++ + Sbjct: 336 EADR-KISLSMKALEADN 352 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EM +++ + V +G V V DFGAF+ GA DGL+HIS++S R+ V K G Sbjct: 182 EMQKALFEKIHVGDKVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKVFKVG 240 Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693 D V + D + KI LSMK + N Sbjct: 241 DKVTALIKDINGE-KIALSMKFPETN 265 >gi|229516964|ref|ZP_04406410.1| transcription accessory protein [Vibrio cholerae RC9] gi|229346027|gb|EEO10999.1| transcription accessory protein [Vibrio cholerae RC9] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|229524694|ref|ZP_04414099.1| transcription accessory protein [Vibrio cholerae bv. albensis VL426] gi|229338275|gb|EEO03292.1| transcription accessory protein [Vibrio cholerae bv. albensis VL426] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|15642710|ref|NP_232343.1| hypothetical protein VC2716 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726718|ref|ZP_01679943.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674924|ref|YP_001218204.1| hypothetical protein VC0395_A2288 [Vibrio cholerae O395] gi|153817458|ref|ZP_01970125.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821294|ref|ZP_01973961.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227082830|ref|YP_002811381.1| hypothetical protein VCM66_2636 [Vibrio cholerae M66-2] gi|229507236|ref|ZP_04396741.1| transcription accessory protein [Vibrio cholerae BX 330286] gi|229509843|ref|ZP_04399324.1| transcription accessory protein [Vibrio cholerae B33] gi|229606742|ref|YP_002877390.1| transcription accessory protein [Vibrio cholerae MJ-1236] gi|254851253|ref|ZP_05240603.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744326|ref|ZP_05418278.1| transcription accessory protein [Vibrio cholera CIRS 101] gi|262158564|ref|ZP_06029679.1| transcription accessory protein [Vibrio cholerae INDRE 91/1] gi|262170042|ref|ZP_06037731.1| transcription accessory protein [Vibrio cholerae RC27] gi|298500469|ref|ZP_07010273.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9657313|gb|AAF95856.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630879|gb|EAX63261.1| conserved hypothetical protein [Vibrio cholerae V52] gi|126512044|gb|EAZ74638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521226|gb|EAZ78449.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146316807|gb|ABQ21346.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227010718|gb|ACP06930.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227014602|gb|ACP10812.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229353317|gb|EEO18256.1| transcription accessory protein [Vibrio cholerae B33] gi|229354741|gb|EEO19662.1| transcription accessory protein [Vibrio cholerae BX 330286] gi|229369397|gb|ACQ59820.1| transcription accessory protein [Vibrio cholerae MJ-1236] gi|254846958|gb|EET25372.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737851|gb|EET93244.1| transcription accessory protein [Vibrio cholera CIRS 101] gi|262021450|gb|EEY40162.1| transcription accessory protein [Vibrio cholerae RC27] gi|262029725|gb|EEY48374.1| transcription accessory protein [Vibrio cholerae INDRE 91/1] gi|297540638|gb|EFH76695.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|167766775|ref|ZP_02438828.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1] gi|317499056|ref|ZP_07957337.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711529|gb|EDS22108.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1] gi|316893706|gb|EFV15907.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V +M +GAFV GLVHISQLS +RV +VVKEGD V VK++ Sbjct: 130 VGTVVEGTVENIMPYGAFVDIGDGISGLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVA 189 Query: 679 DRGKIKLSMKVVDQN 693 + GK+ LS+K ++ + Sbjct: 190 N-GKVSLSIKALEDD 203 >gi|70725969|ref|YP_252883.1| hypothetical protein SH0968 [Staphylococcus haemolyticus JCSC1435] gi|68446693|dbj|BAE04277.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 715 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + SI D+ E K+ G V V+DFGAFV +DGLVH+S+LS + V DVV GD Sbjct: 633 VLSIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDVVSVGDI 691 Query: 670 VWVKLLDFD-DRGKIKLSM 687 V V +LD D ++GK+ L+M Sbjct: 692 VEVWILDIDKNKGKVSLTM 710 >gi|229521790|ref|ZP_04411208.1| transcription accessory protein [Vibrio cholerae TM 11079-80] gi|229341384|gb|EEO06388.1| transcription accessory protein [Vibrio cholerae TM 11079-80] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724 >gi|226947398|ref|YP_002802489.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841768|gb|ACO84434.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|168177509|ref|ZP_02612173.1| RNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670333|gb|EDT82307.1| RNA-binding protein [Clostridium botulinum NCTC 2916] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|283458687|ref|YP_003363322.1| transcriptional accessory protein [Rothia mucilaginosa DY-18] gi|283134737|dbj|BAI65502.1| transcriptional accessory protein [Rothia mucilaginosa DY-18] Length = 854 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V FGAFV +DGLVHISQ+S VA D+V+ GD V V++++ D R Sbjct: 782 VLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVRVRVVEVDPAR 841 Query: 681 GKIKLSMKVVDQN 693 +I LS+ V D+N Sbjct: 842 RRISLSLLVEDEN 854 >gi|323484701|ref|ZP_08090060.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum WAL-14163] gi|323691768|ref|ZP_08106025.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum WAL-14673] gi|323401938|gb|EGA94277.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum WAL-14163] gi|323504134|gb|EGB19939.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum WAL-14673] Length = 379 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G+V ++ DFGAFV D L+H+SQ+S E V K SDV+ G + +++DF+ Sbjct: 280 VGNIVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSAGQIITARVVDFN 339 Query: 679 --DRGKIKLSMKVVDQNTGKPI 698 DR KI LS K ++ P+ Sbjct: 340 EADR-KISLSTKALEAPAEAPV 360 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V V DFGAF+ GA DGL+HIS++S RV V K GD V + D + Sbjct: 197 VGQTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKVGDKVTALIKDIN 255 Query: 679 DRGKIKLSMKVVDQN 693 K+ LS+K + N Sbjct: 256 GE-KVALSLKFPETN 269 >gi|322804444|emb|CBZ01994.1| transcription accessory protein (S1 RNA-binding domain) [Clostridium botulinum H04402 065] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|301165923|emb|CBW25496.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ] Length = 592 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + + +VV+V DFGAFV +GLVHIS+LS ERV K DV+K+GD ++ D Sbjct: 487 VGTVVEAEVVRVTDFGAFVELETGIEGLVHISELSEERVDKPEDVIKKGDVAKAMVISID 546 Query: 679 -DRGKIKLSMK 688 D KI LS+K Sbjct: 547 KDAKKIALSIK 557 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +M + I D + I KG V + D+GAF+ G DGL+HI+ +S RV S++ Sbjct: 213 EERGKMRQEILDQIQEGMIVKGIVKNITDYGAFIDLGGI-DGLLHITDMSWGRVKHPSNL 271 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + GD + VK+L FD D+ ++ L +K V N Sbjct: 272 LNMGDEIDVKILKFDSDKERVSLGLKQVQPN 302 Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G++V V D+G F+ +GL+H+S++S T ++ + G+ + ++LD D + + Sbjct: 319 GEIVSVKDYGVFIELDDGIEGLIHVSEMSWTGKIKNPAKHFNVGERIEAQVLDVDVENKR 378 Query: 683 IKLSMKVVDQNTGKPI 698 I L +K + +N + I Sbjct: 379 ISLGLKQLQENPWEAI 394 >gi|212711647|ref|ZP_03319775.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM 30120] gi|212685749|gb|EEB45277.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM 30120] Length = 776 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++TD+ I +G V V +FGAFV +DGLVHIS LS V VVK G Sbjct: 639 EGVETMTDLTP-GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKTG 697 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+LD D R +I L+M++ +Q Sbjct: 698 DIVKVKVLDVDIARKRIALTMRLDEQ 723 >gi|229917801|ref|YP_002886447.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] gi|229469230|gb|ACQ71002.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] Length = 709 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680 ++G V V+DFGAFV +DGLVHIS+LS V DVV GD TVW++ +D +R Sbjct: 638 FQGTVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDV-NR 696 Query: 681 GKIKLSM 687 G+I L+M Sbjct: 697 GRISLTM 703 >gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4] gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4] Length = 258 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R + G + GS L GDT+ + ++ D++ L GT + Sbjct: 1 MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASI----DDKVPSFLKGTGK 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y LP AT EV++ G PS R + RL R++ + A T+ + Sbjct: 57 GWVTAEYGMLPRATESRNLREVTK-GRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVD 115 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A + G +AL+ A +P+ VA +++G VKD Sbjct: 116 CDVLQADGGTRTAAITGGFVALVYALDWLRNEGAIESLPVKDLVAAVSVGKVKDA----Y 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 L D++ ED + +D V T G Sbjct: 172 LLDLTFAEDSMAEVDLNVVMTGKG 195 >gi|153941426|ref|YP_001389539.1| RNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937322|gb|ABS42820.1| RNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317637|gb|ADF98014.1| RNA-binding protein [Clostridium botulinum F str. 230613] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|170756784|ref|YP_001779803.1| RNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121996|gb|ACA45832.1| RNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|296110337|ref|YP_003620718.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154] gi|295831868|gb|ADG39749.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154] Length = 731 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G V V+DFGAFV DGLVHIS+L+ RV K SDVV GD + V ++D D+ R + Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKKPSDVVSVGDIINVWVVDIDEKRQR 718 Query: 683 IKLSM 687 I L+M Sbjct: 719 IGLTM 723 >gi|229825037|ref|ZP_04451106.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] gi|229790784|gb|EEP26898.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC 49176] Length = 647 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ DFGAF+ D L+H+SQ++T V K SDV+K G+ V K++DF+ Sbjct: 554 VGTIVSGKVARMTDFGAFIELEPGVDALLHVSQIATNHVEKPSDVLKTGEEVTAKVVDFN 613 Query: 679 -DRGKIKLSMKVV----DQNTGK 696 + KI LS+K + D+N K Sbjct: 614 AETKKISLSIKALLAGADENEEK 636 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E+ +++ + V ++ G V V DFGAF+ GA DGL+HIS++S + V K Sbjct: 459 NELKKALFEKLAVGQVVDGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGHIENPKKVFKV 517 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693 GD V + D KI LS+K DQN Sbjct: 518 GDMVKTFVKDIQGE-KIALSLKFEDQN 543 >gi|225572241|ref|ZP_03781105.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM 10507] gi|225040303|gb|EEG50549.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM 10507] Length = 368 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E V K +DV+ G + K++DF+ Sbjct: 276 VGNVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPADVLNIGQEIQAKVVDFN 335 Query: 679 -DRGKIKLSMKVVDQNTGKP 697 + KI LSMK ++ KP Sbjct: 336 GEEKKISLSMKALE--AAKP 353 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 6/90 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E++ I+ V +G V V DFGAF+ GA DGL+HIS++S RV V Sbjct: 182 EKQKELMARIS----VGDTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKV 236 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K GDTV V + D + KI LS+K ++N Sbjct: 237 FKVGDTVKVLIKDING-DKIALSLKFPEEN 265 >gi|148378180|ref|YP_001252721.1| RNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931281|ref|YP_001382580.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934599|ref|YP_001386133.1| RNA-binding protein [Clostridium botulinum A str. Hall] gi|148287664|emb|CAL81729.1| putative RNA binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927325|gb|ABS32825.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152930513|gb|ABS36012.1| RNA-binding protein [Clostridium botulinum A str. Hall] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|160934395|ref|ZP_02081782.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753] gi|156867068|gb|EDO60440.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753] Length = 155 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V + FGAF+ G + G+VHIS+++ V + D V E TV VK+L Sbjct: 4 EVGMVLEGKVTGITKFGAFIELPGGKTGMVHISEVAPTFVKEIRDFVTENQTVKVKVLSI 63 Query: 678 DDRGKIKLSMK 688 + GK+ LSMK Sbjct: 64 SEDGKVSLSMK 74 >gi|121586614|ref|ZP_01676399.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121549173|gb|EAX59206.1| conserved hypothetical protein [Vibrio cholerae 2740-80] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|113461634|ref|YP_719703.1| transcription accessory protein [Haemophilus somnus 129PT] gi|112823677|gb|ABI25766.1| transcription accessory protein, RNA-binding protein containing S1 domain [Haemophilus somnus 129PT] Length = 767 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V +VVK GD Sbjct: 642 VEEITDL-KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENPHEVVKTGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+L+ D R +I L+M+ +D+N K Sbjct: 701 VKVKVLEVDVARKRIGLTMR-LDENQPK 727 >gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442] gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442] Length = 382 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV+ G DGLVHISQ+S +RV + SDV+ +G +V VK+L D D Sbjct: 191 VVEGTVQRLTDFGAFVN-VGNVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADT 249 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 250 QRISLSIK 257 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK-VVDQNT 694 K I LS+K V++N Sbjct: 336 KRISLSIKEAVEENN 350 >gi|153814341|ref|ZP_01967009.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756] gi|317500055|ref|ZP_07958290.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087715|ref|ZP_08336641.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848737|gb|EDK25655.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756] gi|316898540|gb|EFV20576.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409696|gb|EGG89132.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium 3_1_46FAA] Length = 239 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ +G V + ++GAF+ GLVH+SQ+S +RV SDV+ GD V VK++ Sbjct: 136 KIGEVLEGTVETLQNYGAFIKLDNGLSGLVHVSQISQKRVKLPSDVLNAGDKVTVKVIGI 195 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LSMK +++ +P Sbjct: 196 KD-GKISLSMKALEEVKEEP 214 >gi|153802184|ref|ZP_01956770.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|254285911|ref|ZP_04960873.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262190725|ref|ZP_06048955.1| transcription accessory protein [Vibrio cholerae CT 5369-93] gi|124122258|gb|EAY41001.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|150424093|gb|EDN16032.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262033402|gb|EEY51910.1| transcription accessory protein [Vibrio cholerae CT 5369-93] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|153828359|ref|ZP_01981026.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148876189|gb|EDL74324.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|153212528|ref|ZP_01948275.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116399|gb|EAY35219.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|262392648|ref|YP_003284502.1| transcription accessory protein [Vibrio sp. Ex25] gi|262336242|gb|ACY50037.1| transcription accessory protein [Vibrio sp. Ex25] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMKDE 724 >gi|332654410|ref|ZP_08420153.1| general stress protein 13 [Ruminococcaceae bacterium D16] gi|332516374|gb|EGJ45980.1| general stress protein 13 [Ruminococcaceae bacterium D16] Length = 155 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 43/73 (58%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V + FGAFV R GLVHIS+++ V + SD +KEG V VK++ D Sbjct: 5 VGSILDGKVTGITKFGAFVALPEGRSGLVHISEIAYSYVNEVSDYLKEGQEVKVKVIGID 64 Query: 679 DRGKIKLSMKVVD 691 +I LS+K V+ Sbjct: 65 QANRINLSIKKVN 77 >gi|323445709|gb|EGB02186.1| hypothetical protein AURANDRAFT_69118 [Aureococcus anophagefferens] Length = 268 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 V + G+V +V +G FV G GLVH+S+LS ER A+ DVV G V VK+L Sbjct: 99 VGAVRAGEVTRVESYGCFVKLDDGGASGLVHVSELSHER-ARPEDVVAVGQPVLVKVLAP 157 Query: 678 DDRGKIKLSMKVVDQNTG 695 + G+ S+K VDQ TG Sbjct: 158 REPGRTSFSLKAVDQRTG 175 >gi|297203813|ref|ZP_06921210.1| transcriptional accessory protein [Streptomyces sviceus ATCC 29083] gi|297148507|gb|EDY55899.2| transcriptional accessory protein [Streptomyces sviceus ATCC 29083] Length = 795 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + +G V V FGAF+ +DGL H+S LS V DVVK Sbjct: 654 KEGVEKISDL-SAGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKP 712 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+LD D R +I L++++ D+ KP Sbjct: 713 GDIVKVKVLDVDIPRKRISLTLRLDDEAQAKP 744 >gi|262402002|ref|ZP_06078567.1| transcription accessory protein [Vibrio sp. RC586] gi|262351974|gb|EEZ01105.1| transcription accessory protein [Vibrio sp. RC586] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|229513644|ref|ZP_04403108.1| transcription accessory protein [Vibrio cholerae TMA 21] gi|229349521|gb|EEO14477.1| transcription accessory protein [Vibrio cholerae TMA 21] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|255026108|ref|ZP_05298094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-003] Length = 381 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 IT+ +V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV V Sbjct: 266 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325 Query: 673 KLLDFDDRGK-IKLSMK 688 K+L+ ++ K + LS+K Sbjct: 326 KVLEVNEADKRLSLSIK 342 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A +V++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256 >gi|170761041|ref|YP_001785504.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408030|gb|ACA56441.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 718 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFGAFV +DGLVHISQLS V D+VK GD V V++L+ D R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDRKRNRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 SLSMK 717 >gi|261211279|ref|ZP_05925568.1| transcription accessory protein [Vibrio sp. RC341] gi|260839780|gb|EEX66391.1| transcription accessory protein [Vibrio sp. RC341] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|258624644|ref|ZP_05719580.1| RNA-binding protein [Vibrio mimicus VM603] gi|258583108|gb|EEW07921.1| RNA-binding protein [Vibrio mimicus VM603] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|163802253|ref|ZP_02196148.1| hypothetical protein 1103602000603_AND4_17714 [Vibrio sp. AND4] gi|159174058|gb|EDP58868.1| hypothetical protein AND4_17714 [Vibrio sp. AND4] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLSDE 724 >gi|91224986|ref|ZP_01260245.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01] gi|91190232|gb|EAS76502.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724 >gi|254225439|ref|ZP_04919050.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125622073|gb|EAZ50396.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|320033565|gb|EFW15512.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Coccidioides posadasii str. Silveira] Length = 1225 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P + K+Y G+V + DFGAFV+ G R DGLVH+S + RV SD+V V V Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K++ +I LSMK VDQ TG+ +V Sbjct: 315 KVVSIQG-SRIGLSMKEVDQVTGRDLV 340 >gi|258620410|ref|ZP_05715448.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587289|gb|EEW12000.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|303312631|ref|XP_003066327.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735 delta SOWgp] gi|240105989|gb|EER24182.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735 delta SOWgp] Length = 1225 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P + K+Y G+V + DFGAFV+ G R DGLVH+S + RV SD+V V V Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K++ +I LSMK VDQ TG+ +V Sbjct: 315 KVVSIQG-SRIGLSMKEVDQVTGRDLV 340 >gi|326202462|ref|ZP_08192331.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782] gi|325987580|gb|EGD48407.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782] Length = 143 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KI +G+V + FGAFV + GLVHIS+++ E V S +KE V VK+L Sbjct: 4 EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQMVKVKILSI 63 Query: 678 DDRGKIKLSMK 688 D GK+ LS+K Sbjct: 64 DTNGKVSLSIK 74 >gi|297581556|ref|ZP_06943479.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534394|gb|EFH73232.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731] gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731] Length = 724 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++D+ +V I +G + V DFGAFV GL+HIS +S +R+ DVV Sbjct: 639 RQNIVKLSDI-KVGTILRGTIRNVTDFGAFVDIGIKTAGLIHISHMSQKRIKHPLDVVSA 697 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691 G+TV VK++ D+ RG+I L++ D Sbjct: 698 GETVQVKVISVDEGRGRIGLALVTAD 723 >gi|16803977|ref|NP_465462.1| 30S ribosomal protein S1 [Listeria monocytogenes EGD-e] gi|224498612|ref|ZP_03666961.1| 30S ribosomal protein S1 [Listeria monocytogenes Finland 1988] gi|224501263|ref|ZP_03669570.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-561] gi|254827177|ref|ZP_05231864.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165] gi|254831461|ref|ZP_05236116.1| 30S ribosomal protein S1 [Listeria monocytogenes 10403S] gi|254899365|ref|ZP_05259289.1| 30S ribosomal protein S1 [Listeria monocytogenes J0161] gi|254936823|ref|ZP_05268520.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900] gi|255028957|ref|ZP_05300908.1| 30S ribosomal protein S1 [Listeria monocytogenes LO28] gi|284802383|ref|YP_003414248.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578] gi|284995525|ref|YP_003417293.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923] gi|16411391|emb|CAD00016.1| lmo1938 [Listeria monocytogenes EGD-e] gi|258599560|gb|EEW12885.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165] gi|258609418|gb|EEW22026.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900] gi|284057945|gb|ADB68886.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578] gi|284060992|gb|ADB71931.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923] Length = 381 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 IT+ +V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV V Sbjct: 266 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325 Query: 673 KLLDFDDRGK-IKLSMK 688 K+L+ ++ K + LS+K Sbjct: 326 KVLEVNEADKRLSLSIK 342 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A +V++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256 >gi|329894050|ref|ZP_08270035.1| Transcription accessory protein (S1 RNA-binding domain) [gamma proteobacterium IMCC3088] gi|328923222|gb|EGG30542.1| Transcription accessory protein (S1 RNA-binding domain) [gamma proteobacterium IMCC3088] Length = 771 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ E + +G V V +FGAFV +DGLVHIS L+ + V DVVK Sbjct: 636 KEGVEKISDL-ESGMVLEGTVTNVTNFGAFVDVGVHQDGLVHISALADKFVKDPRDVVKA 694 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 G V VK+++ D+ R +I LSM++ D+ Sbjct: 695 GQVVKVKVMEVDEGRKRIGLSMRMSDE 721 >gi|323705558|ref|ZP_08117132.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535035|gb|EGB24812.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 140 Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V ++ +G V+ + DFGAFV + GLVHIS+++ V ++ +KE D V VK+L Sbjct: 4 QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DKGGRISLSIK 74 >gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum JDM301] gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 491 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|262170352|ref|ZP_06038030.1| transcription accessory protein [Vibrio mimicus MB-451] gi|261891428|gb|EEY37414.1| transcription accessory protein [Vibrio mimicus MB-451] Length = 773 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I ++D+ EV + +G V V +FGAFV +DGLVHIS L+ ++ +VVK G Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724 >gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411] Length = 488 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+SQLS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|254228562|ref|ZP_04921987.1| S1 RNA binding domain protein [Vibrio sp. Ex25] gi|151938944|gb|EDN57777.1| S1 RNA binding domain protein [Vibrio sp. Ex25] Length = 608 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 475 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 533 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 534 DIVKVKVMEVDVQRKRIGLSMRMKDE 559 >gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R + V ++ GS L GDT+ I ++ +E+ L GT + Sbjct: 2 IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASV----EEKIPPFLKGTGQ 57 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + + R G RL R++ + TA T+ I Sbjct: 58 GWITAEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKP------VAGIAMGLVKDGDDFIILSDISG 481 ++ ++DG + A++ G+ +AL A I K VA +++G+V G ++++ D++ Sbjct: 118 DVIQADGGTRTASITGAFVALYRALEKIDKLDAVKNFVAAVSVGIV--GGEYLL--DLNY 173 Query: 482 DEDHLGHMDFKVAGTDSG 499 +ED + +D + D G Sbjct: 174 EEDSIAEVDMNIVMNDVG 191 >gi|325982394|ref|YP_004294796.1| Tex-like protein [Nitrosomonas sp. AL212] gi|325531913|gb|ADZ26634.1| Tex-like protein [Nitrosomonas sp. AL212] Length = 740 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 13/160 (8%) Query: 535 MSKVLSESRLQLGEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 + ++L++ +L + E ++ AI P+Q N G ++ I+++ K D T Sbjct: 588 VEQILNDIKLNISELIGNQAVLKAIHPEQYANA-QFGLLTVKDILKEL-EKPGRDPRSTF 645 Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + A A +E I +I D+ + I +G + V FGAFV +DGLVHIS LS Sbjct: 646 RTA--------AFKEGIETIKDL-RSDMILEGVITNVAAFGAFVDIGVHQDGLVHISALS 696 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 + V +VK G V VK+LD D+ R +I L+M++ D Sbjct: 697 DKFVKNPHAIVKVGQVVTVKVLDIDEKRKRIALTMQLSDH 736 >gi|304440184|ref|ZP_07400074.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371233|gb|EFM24849.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 125 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ +I G V VM FGAFV GLVHIS++S V +D VK GD+V VK+L+ Sbjct: 3 EIGEIVDGTVKSVMKFGAFVELEDGSTGLVHISEVSNSFVKDINDYVKSGDSVKVKVLEI 62 Query: 678 DDRGKIKLSMK 688 +D KI LSMK Sbjct: 63 ED-DKISLSMK 72 >gi|253987636|ref|YP_003038992.1| hypothetical protein PAU_00153 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779086|emb|CAQ82246.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 784 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS VA VVK GD V VK+L+ D +R Sbjct: 662 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVADPHTVVKAGDIVKVKVLEVDLNR 721 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 722 KRIALTMRLDEQ 733 >gi|291009547|ref|ZP_06567520.1| RNA binding S1:resolvase, RNase H-like fold protein [Saccharopolyspora erythraea NRRL 2338] Length = 754 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 17/137 (12%) Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI----- 622 +V+RG+ ++ +DD + + LAE+E R ++ T V KI Sbjct: 596 RVLRGLKPES----FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKP 651 Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 +G V V FGAFV +DGLVH+S +S V+ DVVK GD V VK+LD D Sbjct: 652 GMRLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDI 711 Query: 679 DRGKIKLSMKVVDQNTG 695 R +I L++++ D+ G Sbjct: 712 PRKRISLTLRLDDEAGG 728 >gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734] gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734] Length = 488 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+SQLS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|213692621|ref|YP_002323207.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 491 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|302390898|ref|YP_003826718.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501] gi|302202975|gb|ADL11653.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501] Length = 119 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 48/80 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V + +FGAFV G GL+HIS+++ V +D ++ + + VK++ Sbjct: 4 EVGSVVEGKVSGITNFGAFVELSGGETGLIHISEIADTYVKDVNDYLEMNEEIEVKVISI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 DD GKI LS+K ++ KP Sbjct: 64 DDDGKIGLSLKQLEGEDRKP 83 >gi|302866611|ref|YP_003835248.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029] gi|302569470|gb|ADL45672.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029] Length = 815 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 40/217 (18%) Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559 G++ENI+ L + G E+ KV RL F + IP Sbjct: 517 AGLAENIV---LHRDANGPFRTRAELKKV---PRLGPKAFEQCAGFLRIPGGDDPLDSSS 570 Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606 P+ +R ++ G+ +R ++ ++ A +DD + + LAE+E Sbjct: 571 VHPESYPVVRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 630 Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 R R+ T V V KI +G V V FGAFV +DGLVH+S +S Sbjct: 631 DPRPEFRTATFVEGVEKISDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTF 690 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 V DVVK GD V V++LD D R +I L++++ D+ Sbjct: 691 VKDPRDVVKSGDVVKVRVLDVDVPRKRISLTLRLDDE 727 >gi|323497028|ref|ZP_08102051.1| transcription accessory protein [Vibrio sinaloensis DSM 21326] gi|323317872|gb|EGA70860.1| transcription accessory protein [Vibrio sinaloensis DSM 21326] Length = 775 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E + +G V V +FGAFV +DGLVHIS L+ + V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724 >gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium phytofermentans ISDg] gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg] Length = 303 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A+E I+ V + + G V K+M FGAFV GLVHISQ+ +R+ ++V Sbjct: 183 EEAKEKSHKISQVQK-GIVTTGIVDKLMPFGAFVSIGEGLSGLVHISQICGKRIKSPAEV 241 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +KEG V VK+LD D GKI LS+K V Sbjct: 242 LKEGQEVKVKVLDVKD-GKISLSIKAV 267 >gi|331231447|ref|XP_003328387.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307377|gb|EFP83968.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1205 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 4/82 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P + KIY G V + DFG FV G +GLVH++ ++ RV SD+V G V VK Sbjct: 238 PVLYKIYDGTVASIKDFGCFVTLKGVSGKAEGLVHVNAIAAGRVNHPSDLVSRGQPVKVK 297 Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695 ++ +I +SMK VDQNTG Sbjct: 298 VVSIAGE-RIGISMKDVDQNTG 318 >gi|258544890|ref|ZP_05705124.1| histidine triad domain-containing protein [Cardiobacterium hominis ATCC 15826] gi|258519810|gb|EEV88669.1| histidine triad domain-containing protein [Cardiobacterium hominis ATCC 15826] Length = 769 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I+D+ + I +G V V +FGAFV +DGLVHIS L+ V D+VK G Sbjct: 648 EGVHEISDL-QPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALADRYVQDPRDIVKAG 706 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 D V VK+L+ D +R +I L+M++ D T Sbjct: 707 DVVKVKVLEVDAERKRIALTMRLDDDATA 735 >gi|217970449|ref|YP_002355683.1| RNA binding S1 domain protein [Thauera sp. MZ1T] gi|217507776|gb|ACK54787.1| RNA binding S1 domain protein [Thauera sp. MZ1T] Length = 795 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++ D+ E + +G V V +FGAFV +DGLVHIS LS V VVK Sbjct: 638 REGVETLKDL-EPGMLLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKA 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 G V VK+L+ D R +I L+M++ D+ T K Sbjct: 697 GQVVKVKVLEVDIPRHRIALTMRLGDEVTAK 727 >gi|163816329|ref|ZP_02207695.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759] gi|158448326|gb|EDP25321.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759] Length = 715 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHIS++S + + DVV GD V VK++ D ++ Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHPLDVVSVGDIVQVKVIGIDLNK 704 Query: 681 GKIKLSMKVVD 691 +I+LSMK ++ Sbjct: 705 KRIQLSMKGIN 715 >gi|310287294|ref|YP_003938552.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17] gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17] Length = 490 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|269965880|ref|ZP_06179973.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829433|gb|EEZ83674.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 787 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 654 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 712 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 713 DIVKVKVMEVDVQRKRIGLSMRMNDE 738 >gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641] gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] Length = 403 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++DFGAFV G DGLVHIS+LS V S+VVK GD V V++LD D R + Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K Q T P V Sbjct: 270 ISLGLK---QTTEDPWV 283 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V K + FGAFV +GLVHIS+++ + + + VV GD V VK+++ + Sbjct: 291 VGSIIDGKVTKTVPFGAFVELGPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEIN 350 Query: 679 -DRGKIKLSMKVVDQNTG 695 +R +I LSMK ++ G Sbjct: 351 TERRRISLSMKAAAEDLG 368 >gi|268592315|ref|ZP_06126536.1| protein YhgF [Providencia rettgeri DSM 1131] gi|291312098|gb|EFE52551.1| protein YhgF [Providencia rettgeri DSM 1131] Length = 776 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+LD D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIAR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|71019705|ref|XP_760083.1| hypothetical protein UM03936.1 [Ustilago maydis 521] gi|46099848|gb|EAK85081.1| hypothetical protein UM03936.1 [Ustilago maydis 521] Length = 1201 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 7/87 (8%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTV 670 D P++ KIY+GQV + DFG FV G R +G+VHI ++ RV SD++ G V Sbjct: 217 DRPQLYKIYEGQVSNMRDFGVFVSLEGLRGRFEGMVHIGSIAAGTRVNHPSDLLSRGQRV 276 Query: 671 WVKLLD-FDDRGKIKLSMKVVDQNTGK 696 VK++ DR I LSMK VDQ TG+ Sbjct: 277 KVKVMSVVGDR--IGLSMKDVDQATGR 301 >gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM 16841] gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM 16841] Length = 300 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAF++ GLVHISQ+ R+ K S+V+KEG V K+L+ +D Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTNDN- 255 Query: 682 KIKLSMKVVDQ 692 KI LSMK +++ Sbjct: 256 KISLSMKALEE 266 >gi|220930899|ref|YP_002507807.1| RNA binding S1 domain protein [Halothermothrix orenii H 168] gi|219992209|gb|ACL68812.1| RNA binding S1 domain protein [Halothermothrix orenii H 168] Length = 722 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + +G V V+DFGAFV DGLVHIS++S + V VV+ GDTV VK+L+ Sbjct: 650 EAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEV 709 Query: 678 DD-RGKIKLSMKV 689 D+ R +I LSMK+ Sbjct: 710 DERRNRISLSMKL 722 >gi|134101848|ref|YP_001107509.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora erythraea NRRL 2338] gi|133914471|emb|CAM04584.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora erythraea NRRL 2338] Length = 796 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 17/137 (12%) Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI----- 622 +V+RG+ ++ +DD + + LAE+E R ++ T V KI Sbjct: 596 RVLRGLKPES----FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKP 651 Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 +G V V FGAFV +DGLVH+S +S V+ DVVK GD V VK+LD D Sbjct: 652 GMRLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDI 711 Query: 679 DRGKIKLSMKVVDQNTG 695 R +I L++++ D+ G Sbjct: 712 PRKRISLTLRLDDEAGG 728 >gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941] Length = 411 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V DFGAFV GA DGLVH+S+LS RV S+++K GD V V +L D+ R Sbjct: 237 VREGVVTSVCDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNER 295 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 296 KRIALSLK 303 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ +G V ++ FGAFV +GL+H+S++ RV DV++EGD V +++ D Sbjct: 319 IGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRID 378 Query: 679 D-RGKIKLSMK 688 R +I LSM+ Sbjct: 379 PARKRIGLSMR 389 >gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124] gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124] Length = 248 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R GR E +R + + GS L GDT+ + ++ +E+ L G+ Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425 YN LP +T E++++ R EI RL RA+ + A T+ I Sbjct: 57 GWITAEYNMLPRSTQSRKQREINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + ++ GS +AL+DA PI V+ +++G+V G++ + Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKV 172 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 + D+ +EDH+ +D V T+ G +Q + G S + L A++G ++ Sbjct: 173 L--DLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230 Query: 534 EMSKVLSESRLQLG 547 L L +G Sbjct: 231 AQKDALKTDSLWIG 244 >gi|293596578|ref|ZP_05262508.2| 30S ribosomal protein S1 [Listeria monocytogenes J2818] gi|293590480|gb|EFF98814.1| 30S ribosomal protein S1 [Listeria monocytogenes J2818] Length = 439 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 IT+ +V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV V Sbjct: 324 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 383 Query: 673 KLLDFDDRGK-IKLSMK 688 K+L+ ++ K + LS+K Sbjct: 384 KVLEVNEADKRLSLSIK 400 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 216 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 273 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A +V++EG V VK++ D + +I LS+K Sbjct: 274 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 314 >gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17] gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17] Length = 382 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV+ G DGLVHISQ+S +RV + SDV+ +G +V VK+L D D Sbjct: 191 VVEGTVQRLTDFGAFVN-VGDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADT 249 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 250 QRISLSIK 257 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK-VVDQNT 694 K I LS+K V++N Sbjct: 336 KRISLSIKEAVEENN 350 >gi|328462395|gb|EGF34445.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus MTCC 5462] Length = 121 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 6/89 (6%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 ++ EA +E+ I + + +G+V ++ +FGAFV G DGLVH+S++S + V K Sbjct: 15 SKAEARKEIFAKI----QPGDVVEGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKP 69 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SDV+K G + VK+L+ D DR +I LS+K Sbjct: 70 SDVLKVGQEIKVKVLNVDPDRNRISLSIK 98 >gi|291460402|ref|ZP_06599792.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416969|gb|EFE90688.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 254 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V + D+GAFV GL+H+SQ+S R+ +DV+KEG +V VK+ Sbjct: 142 EVGSVLEGKVESLKDYGAFVDIGDGVTGLLHVSQISQRRIKTPADVLKEGQSVTVKITAM 201 Query: 678 DDRGKIKLSMK 688 D G+I LSMK Sbjct: 202 KD-GRISLSMK 211 >gi|15603313|ref|NP_246387.1| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721827|gb|AAK03532.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 791 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 6/92 (6%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS + V VVK GD Sbjct: 661 VEDINDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDI 719 Query: 670 VWVKLLDFD-DRGKIKLSMKV----VDQNTGK 696 V VK+L+ D R +I L+M++ VD+N K Sbjct: 720 VKVKVLEVDVPRKRIALTMRLEEKPVDKNVAK 751 >gi|156972940|ref|YP_001443847.1| transcriptional accessory protein [Vibrio harveyi ATCC BAA-1116] gi|156524534|gb|ABU69620.1| hypothetical protein VIBHAR_00618 [Vibrio harveyi ATCC BAA-1116] Length = 766 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 633 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 691 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 692 DIVKVKVMEVDVQRKRIGLSMRLNDE 717 >gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saburreum DSM 3986] Length = 368 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + KG+V ++ DFGAFV D L+H+SQ+S + V K SDV+K GD V +++F++ Sbjct: 279 VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPE 338 Query: 681 GKIKLSMKVVDQ 692 KI LS+K + Q Sbjct: 339 KKISLSIKALTQ 350 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V V DFGAFV GA DGL+HIS++S RV V K G+ V + D Sbjct: 196 VIEGTVKNVTDFGAFVDLGGA-DGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE- 253 Query: 682 KIKLSMKVVDQN 693 KI LSMK DQN Sbjct: 254 KIALSMKFPDQN 265 >gi|291460381|ref|ZP_06599771.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262] gi|291416948|gb|EFE90667.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262] Length = 374 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G+V ++ DFGAF+ D L+H+SQ+S E V K SDV+ G + K++D D + Sbjct: 275 QIVRGRVARMTDFGAFIELDKGIDALLHVSQISREHVNKPSDVLSVGQEIEAKVVDLDVN 334 Query: 680 RGKIKLSMKVVDQNTGK 696 KI LSMKV+ G+ Sbjct: 335 NHKISLSMKVLLPEEGR 351 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G V + DFGAF+ GA DGL+HIS++S R+ + K G V V + + + Sbjct: 193 VRTGVVKNLTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKLFKPGQEVKVLVKEINGE- 250 Query: 682 KIKLSMKVVDQNTGK 696 +I L+ K D+N K Sbjct: 251 RIALTRKFPDENPWK 265 >gi|253681777|ref|ZP_04862574.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum D str. 1873] gi|253561489|gb|EES90941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum D str. 1873] Length = 633 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 9/88 (10%) Query: 610 IRSITDVPEVN--------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I+ +TD P N I G+VV+ DFGAFV DGLVH+S++S +R+ K S Sbjct: 543 IKKLTDDPWTNIEEKYPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPS 602 Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688 DV+K + V K+L+ + GK + LS+K Sbjct: 603 DVLKLNEEVKAKILNVNKDGKRLSLSIK 630 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%) Query: 549 FTPRVEIMAIPPDQIRNVIG--MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 F P + + + N IG M K+I V + K+ +AS I+A Sbjct: 412 FVPASHVELFHVNDLSNYIGQDMQVKIIEFKVNKRVTKI---------VASRRELLIKAQ 462 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E + + +++ +G++ ++ FGAFV G DGL+H+S++S RV K DV+K Sbjct: 463 AEKEEEAWNTLKKDEVIEGEIRRLTSFGAFVDVNGI-DGLLHVSEISWGRVEKPEDVLKV 521 Query: 667 GDTVWVKLLDFDDRGKIKLSMKV 689 G+ V V +LD D K KLS+ + Sbjct: 522 GEKVKVFILDIDKENK-KLSLSI 543 >gi|281212246|gb|EFA86406.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500] Length = 1232 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P VN IY G+V + D+G FV G R+GLVH+SQ+ + +V SDVVK V Sbjct: 289 PGVNSIYSGKVTGINDYGFFVSLDGIVGKREGLVHVSQIRSTKVQHPSDVVKRNQVV-KV 347 Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695 + K+ LSMK VDQ TG Sbjct: 348 KVLSVVGSKVSLSMKDVDQQTG 369 >gi|90023181|ref|YP_529008.1| general secretion pathway protein J [Saccharophagus degradans 2-40] gi|89952781|gb|ABD82796.1| RNA binding S1 [Saccharophagus degradans 2-40] Length = 772 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + +I D+ E I +G V V +FGAFV +DGLVHIS LS V +VVK GD Sbjct: 641 VETIKDL-EPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKAGDI 699 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN----TGKP 697 V VK+++ D R +I +SM++ D+ TG+P Sbjct: 700 VKVKVMEVDVPRKRIAMSMRMDDEPGEKVTGRP 732 >gi|300853471|ref|YP_003778455.1| transcriptional accessory protein [Clostridium ljungdahlii DSM 13528] gi|300433586|gb|ADK13353.1| transcriptional accessory protein [Clostridium ljungdahlii DSM 13528] Length = 721 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V DVV+ GD V V +L+ D+ R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVQVTVLEVDEKRKRI 712 Query: 684 KLSMKVVD 691 LSMK D Sbjct: 713 SLSMKSSD 720 >gi|300743754|ref|ZP_07072774.1| putative transcriptional accessory protein [Rothia dentocariosa M567] gi|300380115|gb|EFJ76678.1| putative transcriptional accessory protein [Rothia dentocariosa M567] Length = 811 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V V FGAFV +DGL+HISQ+S E VA D+V+ GD V V++++ D Sbjct: 721 VGMVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVD 780 Query: 679 -DRGKIKLSMKVVDQNTGKP 697 R +I LS+ V + G+P Sbjct: 781 ASRRRISLSLLV---DAGEP 797 >gi|153956208|ref|YP_001396973.1| Tex [Clostridium kluyveri DSM 555] gi|219856533|ref|YP_002473655.1| hypothetical protein CKR_3190 [Clostridium kluyveri NBRC 12016] gi|146349066|gb|EDK35602.1| Tex [Clostridium kluyveri DSM 555] gi|219570257|dbj|BAH08241.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 717 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V DVVK GD V V +L+ D+ R +I Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVKVGDIVNVTVLEVDEKRKRI 712 Query: 684 KLSMK 688 LSMK Sbjct: 713 ALSMK 717 >gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411] Length = 516 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+SQLS + + S+VV GD V V++LD D D Sbjct: 236 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 294 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 295 RERVSLSLKATQEDPWR 311 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G VK++D D Sbjct: 319 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 378 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 379 LERRRISLSLKQADED 394 >gi|315924878|ref|ZP_07921095.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621777|gb|EFV01741.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 716 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG V V+DFGAFV +DGLVHISQ+S V SDV+ GD V VK+L D R + Sbjct: 650 KGTVRNVVDFGAFVDIGVHQDGLVHISQISDRYVKHPSDVLSVGDVVTVKVLSVDKPRSR 709 Query: 683 IKLSM 687 I L+M Sbjct: 710 IALTM 714 >gi|219125585|ref|XP_002183057.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405332|gb|EEC45275.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 325 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 13/90 (14%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +P I G++V++ +GAFV C AR GL+HISQ++ R+ K D + D VWVK Sbjct: 4 LPSEGSIVCGEIVRIEPYGAFVQLEECRAR-GLLHISQIANMRLEKVEDALSMNDRVWVK 62 Query: 674 LLDF--DD--------RGKIKLSMKVVDQN 693 +L+ DD R KIKL+MK V Q+ Sbjct: 63 VLEVVPDDNPDMSRPQRFKIKLTMKNVAQD 92 >gi|167759011|ref|ZP_02431138.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704] gi|167663418|gb|EDS07548.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704] Length = 373 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V K+ +G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D + Sbjct: 276 VGKVIEGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLSVGQVITAKIVDLN 335 Query: 679 D-RGKIKLSMKVVD 691 + KI LSMK ++ Sbjct: 336 ESEKKISLSMKALE 349 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAF+ G DGL+HIS++S RV V + G+ V V + D +D KI Sbjct: 198 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGEKVEVLIKDINDT-KI 255 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 256 ALSLKFPETN 265 >gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis 50-1 BON] gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis 50-1 BON] Length = 718 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D +V I +G+VV + FGAFV +GLVHISQ++ +R+ K DV+K GD V VK+ Sbjct: 593 DKYKVGDIVRGKVVSITSFGAFVELEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKI 652 Query: 675 LDF-DDRGKIKLSMK 688 +D + +I LS+K Sbjct: 653 MDVRPEEHRISLSIK 667 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G+V V DFGAFV G DGL+HI LS R+ S+VVK GDTV V +L D K K Sbjct: 518 GKVKNVTDFGAFVDIGGV-DGLIHIGDLSWGRIKHPSEVVKPGDTVDVIVLSADKENK-K 575 Query: 685 LSM 687 LS+ Sbjct: 576 LSL 578 >gi|311113006|ref|YP_003984228.1| transcription accessory protein [Rothia dentocariosa ATCC 17931] gi|310944500|gb|ADP40794.1| transcription accessory protein [Rothia dentocariosa ATCC 17931] Length = 811 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V V FGAFV +DGL+HISQ+S E VA D+V+ GD V V++++ D Sbjct: 721 VGMVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVD 780 Query: 679 -DRGKIKLSMKVVDQNTGKP 697 R +I LS+ V + G+P Sbjct: 781 ASRRRISLSLLV---DAGEP 797 >gi|255016643|ref|ZP_05288769.1| hypothetical protein LmonF_00096 [Listeria monocytogenes FSL F2-515] Length = 115 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|200388687|ref|ZP_03215299.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605785|gb|EDZ04330.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 776 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|16799327|ref|NP_469595.1| hypothetical protein lin0250 [Listeria innocua Clip11262] gi|46906450|ref|YP_012839.1| hypothetical protein LMOf2365_0229 [Listeria monocytogenes serotype 4b str. F2365] gi|47093160|ref|ZP_00230935.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|226222847|ref|YP_002756954.1| hypothetical protein Lm4b_00216 [Listeria monocytogenes Clip81459] gi|254825868|ref|ZP_05230869.1| RNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254854448|ref|ZP_05243796.1| RNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933058|ref|ZP_05266417.1| RNA-binding protein [Listeria monocytogenes HPB2262] gi|254994426|ref|ZP_05276616.1| hypothetical protein LmonocytoFSL_16697 [Listeria monocytogenes FSL J2-064] gi|255521744|ref|ZP_05388981.1| hypothetical protein LmonocFSL_11052 [Listeria monocytogenes FSL J1-175] gi|289433573|ref|YP_003463445.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|300766351|ref|ZP_07076310.1| RNA-binding protein [Listeria monocytogenes FSL N1-017] gi|315301120|ref|ZP_07872407.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL F6-596] gi|21667248|gb|AAM74000.1|AF467001_1 YabR-like protein [Listeria monocytogenes] gi|16412679|emb|CAC95483.1| polyribonucleotide nucleotidyltransferase domain present [Listeria innocua Clip11262] gi|46879714|gb|AAT03016.1| RNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018467|gb|EAL09225.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|225875309|emb|CAS04006.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607848|gb|EEW20456.1| RNA-binding protein [Listeria monocytogenes FSL R2-503] gi|289169817|emb|CBH26355.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|293584616|gb|EFF96648.1| RNA-binding protein [Listeria monocytogenes HPB2262] gi|293595107|gb|EFG02868.1| RNA-binding protein [Listeria monocytogenes FSL J1-194] gi|300512950|gb|EFK40038.1| RNA-binding protein [Listeria monocytogenes FSL N1-017] gi|313630509|gb|EFR98355.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL F6-596] gi|313635128|gb|EFS01460.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL N1-067] gi|313639794|gb|EFS04532.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL S4-171] gi|328467974|gb|EGF39001.1| hypothetical protein LM1816_04868 [Listeria monocytogenes 1816] gi|328469745|gb|EGF40667.1| hypothetical protein LM220_06692 [Listeria monocytogenes 220] gi|332310627|gb|EGJ23722.1| S1 RNA binding domain protein [Listeria monocytogenes str. Scott A] Length = 142 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|220930443|ref|YP_002507352.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10] gi|220000771|gb|ACL77372.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10] Length = 144 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KI +G+V + FGAFV + GLVHIS+++ E V S +KE V VK+L Sbjct: 4 EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQIVKVKILSV 63 Query: 678 DDRGKIKLSMK 688 D GK+ LS+K Sbjct: 64 DTNGKVSLSIK 74 >gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC 27678] gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1] gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679] gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022] gi|171278819|gb|EDT46480.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC 27678] gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1] gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679] gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022] Length = 490 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395] gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395] Length = 490 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ KGQV K +++FGAFV G DGLVH+S+LS + + S+VV GD V V+ Sbjct: 203 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVE 261 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 262 VLDVDMDRERVSLSLKATQED 282 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 DR +I LS+K +++ Sbjct: 353 LDRRRISLSLKQANED 368 >gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM 16992] gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|240146571|ref|ZP_04745172.1| protein YhgF [Roseburia intestinalis L1-82] gi|257201302|gb|EEU99586.1| protein YhgF [Roseburia intestinalis L1-82] gi|291540980|emb|CBL14091.1| Transcriptional accessory protein [Roseburia intestinalis XB6B4] Length = 752 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHISQ+S + +VV GD V VK+LD D + Sbjct: 682 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVLDVDLKK 741 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 742 QRIALTMKI 750 >gi|224500331|ref|ZP_03668680.1| hypothetical protein LmonF1_11944 [Listeria monocytogenes Finland 1988] Length = 142 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|224282840|ref|ZP_03646162.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1P RpsA [Bifidobacterium bifidum PRL2010] gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010] gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171] Length = 490 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|291059681|gb|ADD72416.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Chicago] Length = 829 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN + KG+V K+ DFGAF+ +GL HIS+ S ++ +K SD+VK GD V +L + Sbjct: 544 VNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGY 603 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D G++ L +K V N + I Sbjct: 604 DIQAGRVSLGLKQVTANPWEEI 625 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR+ + + G V FGAF+ G DGL+H++ +S VA+ + Sbjct: 444 ERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREF 502 Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMK 688 VK+G T+ +K++ D K I LS+K Sbjct: 503 VKKGQTIELKVIRLDQAEKRINLSLK 528 >gi|16802264|ref|NP_463749.1| hypothetical protein lmo0218 [Listeria monocytogenes EGD-e] gi|47097257|ref|ZP_00234817.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|116871601|ref|YP_848382.1| hypothetical protein lwe0181 [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965696|ref|YP_002351374.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23] gi|224503462|ref|ZP_03671769.1| hypothetical protein LmonFR_13292 [Listeria monocytogenes FSL R2-561] gi|254829309|ref|ZP_05233996.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|254832461|ref|ZP_05237116.1| hypothetical protein Lmon1_13986 [Listeria monocytogenes 10403S] gi|254900997|ref|ZP_05260921.1| hypothetical protein LmonJ_14323 [Listeria monocytogenes J0161] gi|254913935|ref|ZP_05263947.1| RNA-binding protein [Listeria monocytogenes J2818] gi|254938275|ref|ZP_05269972.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|255025714|ref|ZP_05297700.1| hypothetical protein LmonocytFSL_04095 [Listeria monocytogenes FSL J2-003] gi|255030075|ref|ZP_05302026.1| hypothetical protein LmonL_15199 [Listeria monocytogenes LO28] gi|284803043|ref|YP_003414908.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578] gi|284996184|ref|YP_003417952.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923] gi|290894274|ref|ZP_06557241.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] gi|16409583|emb|CAD00745.1| polyribonucleotide nucleotidyltransferase domain present [Listeria monocytogenes EGD-e] gi|47014357|gb|EAL05330.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|116740479|emb|CAK19599.1| RNA binding domain protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217334966|gb|ACK40760.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23] gi|258601722|gb|EEW15047.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|258610885|gb|EEW23493.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284058605|gb|ADB69546.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578] gi|284061651|gb|ADB72590.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923] gi|290556158|gb|EFD89705.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] gi|293591953|gb|EFG00288.1| RNA-binding protein [Listeria monocytogenes J2818] gi|307569757|emb|CAR82936.1| S1 RNA-binding domain protein [Listeria monocytogenes L99] gi|313611246|gb|EFR86026.1| RNA-binding S1 domain-containing protein [Listeria monocytogenes FSL F2-208] Length = 142 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|261250556|ref|ZP_05943131.1| transcription accessory protein [Vibrio orientalis CIP 102891] gi|260939125|gb|EEX95112.1| transcription accessory protein [Vibrio orientalis CIP 102891] Length = 773 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E + +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLKDE 724 >gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|188580003|ref|YP_001923448.1| RNA binding S1 domain protein [Methylobacterium populi BJ001] gi|179343501|gb|ACB78913.1| RNA binding S1 domain protein [Methylobacterium populi BJ001] Length = 773 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAVDVPRKR 714 Query: 683 IKLSMKVVDQNTGKP 697 I LSM++ D G P Sbjct: 715 ISLSMRLDDPIDGTP 729 >gi|169632219|ref|YP_001705955.1| hypothetical protein ABSDF0251 [Acinetobacter baumannii SDF] gi|169151011|emb|CAO99648.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 794 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ IDD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFIDDKFGLPTIQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724 >gi|291535706|emb|CBL08818.1| Transcriptional accessory protein [Roseburia intestinalis M50/1] Length = 752 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHISQ+S + +VV GD V VK+LD D + Sbjct: 682 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVLDVDLKK 741 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 742 QRIALTMKI 750 >gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004] gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004] Length = 780 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK++D D +R Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVENPHTVVKTGDIVKVKVMDIDLNR 711 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ +Q P Sbjct: 712 KRIGLTMRLDEQPGEAP 728 >gi|256375896|ref|YP_003099556.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827] gi|255920199|gb|ACU35710.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827] Length = 785 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 648 VLEGVVTNVAAFGAFVDVGVHQDGLVHISALSDTYVKDPRDVVKSGDVVRVKVLEVDIPR 707 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L++++ D+ KP Sbjct: 708 KRIGLTLRLTDEPGRKP 724 >gi|299820647|ref|ZP_07052536.1| RNA-binding protein [Listeria grayi DSM 20601] gi|299817668|gb|EFI84903.1| RNA-binding protein [Listeria grayi DSM 20601] Length = 141 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKVQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDAVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|125975144|ref|YP_001039054.1| RNA binding S1 [Clostridium thermocellum ATCC 27405] gi|256003200|ref|ZP_05428192.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] gi|281418435|ref|ZP_06249454.1| RNA binding S1 domain protein [Clostridium thermocellum JW20] gi|125715369|gb|ABN53861.1| RNA binding S1 [Clostridium thermocellum ATCC 27405] gi|255992891|gb|EEU02981.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360] gi|281407519|gb|EFB37778.1| RNA binding S1 domain protein [Clostridium thermocellum JW20] gi|316939311|gb|ADU73345.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 1313] Length = 140 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KI +G+V + FGAFV + GLVHIS+++ E V +KE TV VK++ Sbjct: 4 EVGKIVEGRVSGITSFGAFVELSNGQTGLVHISEVADEYVKDIKSHLKENQTVKVKIISV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 DKNGKISLSIK 74 >gi|331085544|ref|ZP_08334628.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407431|gb|EGG86933.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 222 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A E + + ++P V I G V + +GAF+ GLVH+SQ+ +R+ +DV Sbjct: 106 EQAAERAKKVQEIP-VGSILSGTVDSLQSYGAFILLENGLSGLVHVSQICEKRIKSPADV 164 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 +K G+ V VK++ D GKI LSMK + Sbjct: 165 LKTGEEVQVKVIGIKD-GKISLSMKAL 190 >gi|313625437|gb|EFR95194.1| RNA-binding S1 domain-containing protein [Listeria innocua FSL J1-023] Length = 142 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD+ Sbjct: 64 GDDGKIGLSIRKAVDR 79 >gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Ailuropoda melanoleuca] Length = 240 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E + D Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEAKGRRD- 63 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 R Y+ +TGE R R+ G R+ + + I Sbjct: 64 -----RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 118 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S E+ Sbjct: 119 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLSHVEEA 174 Query: 486 LG--HMDFKVAGTDSGITAMQMDMKI 509 G + + I ++MD ++ Sbjct: 175 AGGPQLALALLPASGQIALLEMDARL 200 >gi|269959402|ref|ZP_06173785.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835839|gb|EEZ89915.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 773 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724 >gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025513|ref|YP_001933285.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14] gi|3322552|gb|AAC65266.1| ribosomal protein S1 (rpsA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018088|gb|ACD70706.1| ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14] Length = 863 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN + KG+V K+ DFGAF+ +GL HIS+ S ++ +K SD+VK GD V +L + Sbjct: 578 VNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGY 637 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D G++ L +K V N + I Sbjct: 638 DIQAGRVSLGLKQVTANPWEEI 659 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR+ + + G V FGAF+ G DGL+H++ +S VA+ + Sbjct: 478 ERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREF 536 Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMK 688 VK+G T+ +K++ D K I LS+K Sbjct: 537 VKKGQTIELKVIRLDQAEKRINLSLK 562 >gi|238916339|ref|YP_002929856.1| hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750] gi|238871699|gb|ACR71409.1| Hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750] Length = 763 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-D 679 I KG V V+DFGAFV +DGLVHISQ+ ST+RV DVV GD V V+++D D Sbjct: 646 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIP 705 Query: 680 RGKIKLSM 687 + +I LSM Sbjct: 706 KARISLSM 713 >gi|153833924|ref|ZP_01986591.1| protein YhgF [Vibrio harveyi HY01] gi|148869762|gb|EDL68739.1| protein YhgF [Vibrio harveyi HY01] Length = 773 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724 >gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42] gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42] Length = 798 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ E + +G V V FGAFV +DGLVH+SQLS + V +VVK G Sbjct: 668 EGVEDIADLRE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTG 726 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+L+ D R +I LSMK+ Sbjct: 727 DIVKVKVLEVDAARKRISLSMKL 749 >gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703] gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis L2-32] gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703] gi|154084010|gb|EDN83055.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis L2-32] Length = 490 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 >gi|118579778|ref|YP_901028.1| ribosomal protein S1 [Pelobacter propionicus DSM 2379] gi|118502488|gb|ABK98970.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379] Length = 579 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G V V ++GAFV G DGL+H+S LS RV K +DV+K G TV K+L F Sbjct: 210 EEGQIVEGVVKNVTEYGAFVDLGGV-DGLLHVSDLSWGRVGKPADVLKPGQTVTAKVLKF 268 Query: 678 D-DRGKIKLSMK 688 D +GKI L +K Sbjct: 269 DRTKGKISLGVK 280 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 P+ ++I G+VV +M++GAFV +GL+H+S++S T R+ + +DV+ GD V +L Sbjct: 295 PQESRI-SGRVVSLMEYGAFVELEPGVEGLIHVSEMSWTRRIRRAADVLSVGDEVEAVVL 353 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D + KI L +K +N Sbjct: 354 GIDMNNRKISLGLKQAGEN 372 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + DFG FV +GL+H+S+LS E+V + GDT+ +L D + +I Sbjct: 476 GKVTSLTDFGVFVELEEGVEGLIHVSELSREKVPTAKTFAEVGDTLEAIVLSCDPKERRI 535 Query: 684 KLSMKVV 690 LS+K + Sbjct: 536 SLSIKAM 542 Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +GQ+ + DFG F+ DGLVH+S +S T+R+ DV +GD V +L D Sbjct: 388 EGQIKNMTDFGMFIGIEDGIDGLVHVSDISWTKRIKHPGDVYAKGDIVQAVVLKVD 443 >gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV] gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV] Length = 399 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+LD + D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863] gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863] Length = 441 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE AARE S + + +G V + DFGAF+ G DGL+HIS++S R+ Sbjct: 215 AERTAARERFWSTV---QEGDVLEGTVKSITDFGAFIDLGGV-DGLLHISEMSYGRIKHP 270 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 S VV EG+ + VK+L D ++GK+ L +K V Sbjct: 271 SQVVSEGERIKVKVLRLDREKGKVSLGLKQV 301 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V ++ FGAFV DGL+HISQ++ R+ +VV GD V VK+++ D + Sbjct: 318 IVEGTVARLTTFGAFVELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQN 377 Query: 682 -KIKLSMK 688 +I LS++ Sbjct: 378 RRISLSLR 385 >gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Opitutaceae bacterium TAV2] gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Opitutaceae bacterium TAV2] Length = 555 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ + KG V K+ FGAFV DGLVHISQ+S ER+ K DV+K G V +++ Sbjct: 442 KIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKI 501 Query: 678 D-DRGKIKLSMKVVD 691 D D ++ LS+K + Sbjct: 502 DRDERRLGLSIKAAN 516 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 6/91 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E R ++ SI + ++ KG V + DFGAF+ G DGL+HI+ +S R+A S++ Sbjct: 173 EKRRNLLESI----QPGQVRKGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRIAHPSEM 227 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +K+G+ + V +++ + D+ ++ L +K +N Sbjct: 228 LKQGEEIQVMIIEVNRDKERVSLGLKQTTKN 258 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + +GAF+ DG+VH+S +S T +V S+V+K+GD V +LD D + + Sbjct: 362 GKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQR 421 Query: 683 IKLSMK 688 I L MK Sbjct: 422 ISLGMK 427 Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 2/52 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEG 667 P KI+ G+VV ++ +GAF+ +GLVHI+++S T+R+ K S++++ G Sbjct: 268 PVGTKIH-GKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVG 318 >gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 [Lactobacillus casei BL23] gi|227535138|ref|ZP_03965187.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631542|ref|ZP_04674573.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|190712674|emb|CAQ66680.1| 30S Ribosomal protein S1 [Lactobacillus casei BL23] gi|227187183|gb|EEI67250.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526007|gb|EEQ65008.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382400|gb|AEA53876.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei LC2W] gi|327385601|gb|AEA57075.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei BD-II] Length = 439 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+V ++ +FGAFV G DGLVH+S++S + V K SDV+K G + VK+L+ D DR + Sbjct: 207 EGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNR 265 Query: 683 IKLSMK 688 I LS+K Sbjct: 266 ISLSIK 271 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S E VA +DV+KEG V VK+L D D Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDA 349 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K + + Sbjct: 350 HRLALSIKALQE 361 >gi|153952815|ref|YP_001393580.1| hypothetical protein CKL_0162 [Clostridium kluyveri DSM 555] gi|219853480|ref|YP_002470602.1| hypothetical protein CKR_0137 [Clostridium kluyveri NBRC 12016] gi|146345696|gb|EDK32232.1| Predicted ribosomal protein [Clostridium kluyveri DSM 555] gi|219567204|dbj|BAH05188.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 136 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V+ + FGAFV G + GLVHIS++S V D +KE D + VK++ DD G Sbjct: 8 ILEGTVINITSFGAFVDVNG-KTGLVHISEVSDTYVKNIRDYLKEKDKIRVKIISIDDNG 66 Query: 682 KIKLSMKVVDQN 693 KI LSMK +++ Sbjct: 67 KISLSMKQAEKD 78 >gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44] gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44] Length = 382 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV+ G DGLVHISQ+S +RV + +DV+ +G +V VK+L D D Sbjct: 191 VVEGTVQRLTDFGAFVNVGGV-DGLVHISQISHDRVEQPADVLTQGQSVKVKVLSVDADT 249 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 250 QRISLSIK 257 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V +++ FGAFV +GLVH+SQ++ V ++V++ G V VK+L+ Sbjct: 276 IREGLVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 336 KRISLSIK 343 >gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5] gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5] Length = 405 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V ++ FGAFV G DGLVH+S+++ V K SDV+ EGD V VK+L D + Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPE 258 Query: 680 RGKIKLSMK 688 +GKI LS+K Sbjct: 259 KGKISLSIK 267 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V +++ FGAFV +GLVHISQ+S + + +V+KEG V VK+LD + Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 346 QRISLSIK 353 >gi|116494865|ref|YP_806599.1| 30S ribosomal protein S1 [Lactobacillus casei ATCC 334] gi|116105015|gb|ABJ70157.1| SSU ribosomal protein S1P [Lactobacillus casei ATCC 334] Length = 439 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+V ++ +FGAFV G DGLVH+S++S + V K SDV+K G + VK+L+ D DR + Sbjct: 207 EGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNR 265 Query: 683 IKLSMK 688 I LS+K Sbjct: 266 ISLSIK 271 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S E VA +DV+KEG V VK+L D D Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDA 349 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K + + Sbjct: 350 HRLALSIKALQE 361 >gi|119192732|ref|XP_001246972.1| hypothetical protein CIMG_00743 [Coccidioides immitis RS] Length = 1215 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P + K+Y G+V + DFGAFV+ G R DGLVH+S + RV SD+V V V Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K++ +I LSMK VDQ TG+ +V Sbjct: 315 KVVSIQG-PRIGLSMKEVDQVTGRDLV 340 >gi|326434949|gb|EGD80519.1| zinc finger protein [Salpingoeca sp. ATCC 50818] Length = 266 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +P + KIY+ V + ++GAFV G + L+HISQ+S R+ ++VV GD ++ K+ Sbjct: 14 MPALYKIYRVAVTSIKEYGAFVEMEGFNKKALLHISQMSQSRINDPTEVVSVGDPLFAKV 73 Query: 675 LDFDDRGKIKLSMKVVDQNTG 695 ++ + GKI +S+K V Q+ G Sbjct: 74 IEIKEDGKISVSIKTVRQSDG 94 >gi|303247107|ref|ZP_07333382.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ] gi|302491533|gb|EFL51418.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ] Length = 508 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL+ +A + S+++ V +G+V ++ DFGAFV +GL+H+S++S T R+ Sbjct: 271 SLSIKQAGPDPWDSVSEKFAVGDKVEGKVTRLADFGAFVELAPGIEGLIHVSEMSHTRRI 330 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 AK SDVV GD V V + D D + +I LS+K Sbjct: 331 AKPSDVVNPGDVVTVSIKDIDLAKRRISLSLK 362 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D + ++ L E E A +R + V + + + FGAF +GLVH Sbjct: 173 DGRNIVVSRRKLLEEERAESELRFLESV-NPGDVIPAVITRFATFGAFAEVAPGLEGLVH 231 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGKIKLSMK 688 +S+LS R K D V G V VK+L FD R +I LS+K Sbjct: 232 LSELSWSRAEKPEDAVSLGQAVTVKVLAFDRDKKGRPRISLSIK 275 >gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107 str. F0167] Length = 368 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + KG+V ++ DFGAFV D L+H+SQ+S + V K SDV+K GD V +++F++ Sbjct: 279 VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEAD 338 Query: 682 -KIKLSMKVVDQ 692 KI LS+K + Q Sbjct: 339 KKISLSIKALTQ 350 >gi|187933110|ref|YP_001884760.1| 30S ribosomal protein S1 [Clostridium botulinum B str. Eklund 17B] gi|187721263|gb|ACD22484.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum B str. Eklund 17B] Length = 378 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I++G+VVK FGAFV +GLVHIS+++ E +AK SD ++ V VK+LDF+ D Sbjct: 280 IFEGKVVKFASFGAFVEIFEGIEGLVHISEITDENIAKPSDALELNQKVKVKVLDFNKDT 339 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 340 KRLSLSIK 347 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V K++ +GAFV G +GLVHIS LS RV + +VVKE D V V + D ++ K+ Sbjct: 198 GVVKKLVKYGAFVDIGGV-EGLVHISDLSWNRVNRPEEVVKENDKVEVYIGSIDVEKQKL 256 Query: 684 KLSMKVVDQ 692 L +K +++ Sbjct: 257 SLVLKDINK 265 >gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211] gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211] Length = 399 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+LD + D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|262373677|ref|ZP_06066955.1| transcriptional accessory protein [Acinetobacter junii SH205] gi|262311430|gb|EEY92516.1| transcriptional accessory protein [Acinetobacter junii SH205] Length = 785 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV+++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVSQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|256752354|ref|ZP_05493215.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748765|gb|EEU61808.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 140 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 44/73 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V + +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMKVV 690 D G+I LS+K V Sbjct: 64 DANGRISLSIKKV 76 >gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 5 [Canis familiaris] Length = 238 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 18/238 (7%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV Y Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV---------YGPH 56 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + R Y+ +TGE R R+ G R+ + + I Sbjct: 57 EASGHRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDI 116 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S E+ Sbjct: 117 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEEA 172 Query: 486 LG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541 G + + I ++MD + + E+ + L+ A R + + +V+ + Sbjct: 173 AGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 227 >gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10] gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10] Length = 405 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V ++ FGAFV G DGLVH+S+++ V K SDV+ EGD V VK+L D + Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPE 258 Query: 680 RGKIKLSMK 688 +GKI LS+K Sbjct: 259 KGKISLSIK 267 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V +++ FGAFV +GLVHISQ+S + + +V+KEG V VK+LD + Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 346 QRISLSIK 353 >gi|126666627|ref|ZP_01737605.1| General secretion pathway protein J [Marinobacter sp. ELB17] gi|126629015|gb|EAZ99634.1| General secretion pathway protein J [Marinobacter sp. ELB17] Length = 304 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ E + +G V V +FGAFV +DGLVHIS L+ + +VVK G Sbjct: 155 EGVETLKDL-EPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADRFIKDPREVVKAG 213 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 D V VK+++ D R +I L+M++ DQ +P Sbjct: 214 DIVKVKVMEVDIPRKRIALTMRMGDQPGQQP 244 >gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A] Length = 484 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG F+ +GLVHIS+L+ V VVK G+TV+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347 Query: 674 LLDFD 678 ++D D Sbjct: 348 VIDVD 352 >gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera micronuciformis F0359] gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera micronuciformis F0359] Length = 660 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 3/107 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ ++ S A +E RE R+ + E + +G VVKVM +GAF+ G +GL+ Sbjct: 441 DEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDL-GGVEGLL 499 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 HIS +S +R+ DV++ G+ V V + FD +R +I LSMK + +N Sbjct: 500 HISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKN 546 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + KG+V K++ FGA + GL+H+S+L+ +R A D++ GD + VK++ Sbjct: 556 EVGDVVKGEVKKLLPFGAILAIDPELQGLLHVSELTDKRGAVVKDLIAVGDVLDVKIIGI 615 Query: 678 D-DRGKIKLSMKVVDQN 693 D D+ KI LS+ ++++ Sbjct: 616 DTDKKKISLSVVAIEED 632 >gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus TPSY] gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY] Length = 798 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ E + +G V V FGAFV +DGLVH+SQLS + V +VVK G Sbjct: 668 EGVEDIADLRE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTG 726 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+L+ D R +I LSMK+ Sbjct: 727 DIVKVKVLEVDAARKRISLSMKL 749 >gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084] gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084] Length = 392 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R++ V I +G V K++ FGAFV +GLVHIS+++ + V + V GDTV Sbjct: 283 RTLVKKYPVGAIVEGSVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVDAPAQVCAVGDTV 342 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTG 695 VK+++ D DR +I LSMK + G Sbjct: 343 QVKVMEIDLDRRRISLSMKAAAETLG 368 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++DFGAFV G DGL+HIS+LS V S+VVK G V V++LD D +R + Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K ++ + +V Sbjct: 270 ISLGLKQTTEDPWRTLV 286 >gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD] gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD] Length = 500 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 7/86 (8%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP ++ KG+V K++ FG F+ +GLVHIS+L+ V VVK + V+VK Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVK 347 Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694 ++D D DR +I LS+K VD N+ Sbjct: 348 VIDVDLDRRRISLSLKQANEAVDPNS 373 >gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97] gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97] gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172] Length = 481 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05] gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05] Length = 500 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 7/86 (8%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP ++ KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694 ++D D DR +I LS+K VD N+ Sbjct: 348 VIDVDLDRRRISLSLKQATEAVDPNS 373 >gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093] gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093] Length = 495 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I +G+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 >gi|318058293|ref|ZP_07977016.1| transcriptional accessory protein [Streptomyces sp. SA3_actG] Length = 748 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E + +G V V FGAFV +DGLVH+S LS E V +VVK Sbjct: 621 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 679 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 680 GDIVKVKVLDVDLPRKRISLTLRLDDE 706 >gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950] Length = 479 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|114561423|ref|YP_748936.1| RNA-binding S1 domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114332716|gb|ABI70098.1| RNA binding S1 domain protein [Shewanella frigidimarina NCIMB 400] Length = 790 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I +G V V +FGAFV +DGLVHIS L+ + V+ VVK GD V VK+++ Sbjct: 650 KVEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEV 709 Query: 678 D-DRGKIKLSM---------KVVDQNTGKP 697 D +R +I LSM K + Q+ GKP Sbjct: 710 DIERRRIALSMRLDEKIDTEKAIRQSQGKP 739 >gi|213423738|ref|ZP_03356718.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 349 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 226 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 285 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 286 KRIALTMRLDEQ 297 >gi|320165541|gb|EFW42440.1| RNA helicase [Capsaspora owczarzaki ATCC 30864] Length = 1303 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVW 671 PEV +IY V + +FG F G R +GLVHIS++ E +V +DVV G + Sbjct: 316 APEVGRIYDASVTSIKEFGFFAQLDGFRRKVEGLVHISEIRREGKVTNPADVVSRGQQIK 375 Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696 VKL + K+ LSMK VDQ TG+ Sbjct: 376 VKLKSIAGQ-KMSLSMKDVDQTTGE 399 >gi|326790718|ref|YP_004308539.1| Tex-like protein [Clostridium lentocellum DSM 5427] gi|326541482|gb|ADZ83341.1| Tex-like protein [Clostridium lentocellum DSM 5427] Length = 711 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 2/80 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I I D+ E K+ KG V ++DFGAF+ +DGLVHISQ+S + + +VVK GD Sbjct: 632 ILEIKDLKEGMKL-KGTVRNIVDFGAFIDIGVHQDGLVHISQMSNKFIKHPLEVVKVGDI 690 Query: 670 VWVKLLDFDD-RGKIKLSMK 688 V V +L D + KI LSMK Sbjct: 691 VEVSILSVDTIKNKIALSMK 710 >gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018] gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019] gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019] Length = 500 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 7/86 (8%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP ++ KG+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694 ++D D DR +I LS+K VD N+ Sbjct: 348 VIDVDLDRRRISLSLKQANEAVDPNS 373 >gi|289804102|ref|ZP_06534731.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 348 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 222 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 281 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 282 KRIALTMRLDEQ 293 >gi|213586558|ref|ZP_03368384.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 502 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 379 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 438 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 439 KRIALTMRLDEQ 450 >gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755] gi|166028378|gb|EDR47135.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755] Length = 359 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S V K SDV+K G+ V K++D + Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLN 335 Query: 679 D-RGKIKLSMKVVD 691 + KI LSMK ++ Sbjct: 336 EAEKKISLSMKALE 349 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAF+ G DGL+HIS++S RV V K GD + V + D D KI Sbjct: 198 EGVVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFKVGDELKVLVKDIHDT-KI 255 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 256 ALSLKFPESN 265 >gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis HN019] gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis AD011] gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis HN019] gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis AD011] gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9] Length = 493 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G V +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R +I LS+K ++ Sbjct: 269 RERISLSLKATQED 282 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I +G+V K++ FG F+ +GLVHIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 >gi|227528910|ref|ZP_03958959.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540] gi|227351184|gb|EEJ41475.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540] Length = 169 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V ++ +FGAFV + GLVHISQ+S V DV+ GDTV VK+ Sbjct: 4 EVGAKVSGKVSEITNFGAFVDLDDNQTGLVHISQISNNYVKDIHDVLSVGDTVTVKVTKV 63 Query: 678 DDRGKIKLSMK 688 D GKI LSMK Sbjct: 64 GDDGKIALSMK 74 >gi|213426885|ref|ZP_03359635.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 779 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104] gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104] Length = 480 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv] gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551] gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11] gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|215404070|ref|ZP_03416251.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|215411275|ref|ZP_03420083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 94_M4241A] gi|215426948|ref|ZP_03424867.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T92] gi|215430522|ref|ZP_03428441.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|215445812|ref|ZP_03432564.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|218753336|ref|ZP_03532132.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis GM 1503] gi|219557550|ref|ZP_03536626.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T17] gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435] gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C] gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str. Haarlem] gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186578|ref|ZP_05764052.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CPHL_A] gi|260200691|ref|ZP_05768182.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T46] gi|260204899|ref|ZP_05772390.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis K85] gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46] gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A] gi|289554596|ref|ZP_06443806.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605] gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17] gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85] gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92] gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503] gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210] gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207] gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506] gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A] gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003] gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004] gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005] gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006] gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012] gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475] gi|6226090|sp|O06147|RS1_MYCTU RecName: Full=30S ribosomal protein S1 gi|2113914|emb|CAB08883.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium tuberculosis H37Rv] gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551] gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C] gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str. Haarlem] gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra] gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11] gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435] gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46] gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A] gi|289439228|gb|EFD21721.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605] gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85] gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17] gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987] gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92] gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054] gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503] gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85] gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A] gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003] gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004] gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005] gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006] gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012] gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A] gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148] gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207] Length = 481 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|325509261|gb|ADZ20897.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 642 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P + D ++ IG V I+E + K KI +S A + +E Sbjct: 420 FIPASHVELFHVDNLKEYIGKSFDV--AIIEYSTKK------RQTKIVASRRALLSKEKE 471 Query: 609 MIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + ++ + E ++ +G+V ++ DFGAFV G DGL+H+S++S RV K +DV+K G Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGV-DGLLHVSEISWGRVEKPADVLKIG 530 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + V +L D + K+ LS+K + +N Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTEN 557 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683 G+VV+ DFGAFV DGLVHIS++S +R+AK SD + G+ + K+L+ + KI Sbjct: 574 GKVVRFADFGAFVELEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKI 633 Query: 684 KLSMKVVDQ 692 LS++ V++ Sbjct: 634 GLSIREVEE 642 >gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886] gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886] Length = 775 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G + V +FGAFV +DGLVHIS LS + ++ DVVK GD V VK+++ D R Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPRDVVKAGDVVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ--NTGKPI 698 +I LSM++ D+ KP+ Sbjct: 713 KRIGLSMRLSDEPGTDSKPV 732 >gi|254787791|ref|YP_003075220.1| transcriptional accessory protein [Teredinibacter turnerae T7901] gi|237685533|gb|ACR12797.1| putative transcriptional accessory protein [Teredinibacter turnerae T7901] Length = 773 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E I +G V V +FGAFV +DGLVHIS LS V +VVK Sbjct: 640 QEGVEKVSDL-EPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKA 698 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V K+++ D DR +I LS+++ D Sbjct: 699 GDIVKAKVMEVDVDRKRIALSLRLDD 724 >gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] Length = 248 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R GR E +R + + GS L GDT+ + ++ +E+ L G+ Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425 YN LP +T +++++ R EI RL RA+ + A T+ I Sbjct: 57 GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + ++ GS +AL+DA PI V+ +++G+V G++ I Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKI 172 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 + D+ +EDH+ +D V T+ G +Q + G S + L A++G ++ Sbjct: 173 L--DLCYEEDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230 Query: 534 EMSKVLSESRLQLG 547 L L +G Sbjct: 231 AQKDALKTDSLWIG 244 >gi|168241644|ref|ZP_02666576.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449194|ref|YP_002047528.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407498|gb|ACF67717.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339078|gb|EDZ25842.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 776 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155] gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155] Length = 479 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQNTGK 696 ++ LS+K ++ + Sbjct: 270 ERVSLSLKATQEDPWR 285 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV+ GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|147676524|ref|YP_001210739.1| RNA binding protein [Pelotomaculum thermopropionicum SI] gi|146272621|dbj|BAF58370.1| predicted RNA binding protein [Pelotomaculum thermopropionicum SI] Length = 126 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 44/74 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V + +FGAF+ G GLVHIS+++ V D +K D V VK++ Sbjct: 4 EVGSVLEGVVTGITNFGAFIELPGGETGLVHISEIAEVYVKDVHDFLKTNDKVTVKVISI 63 Query: 678 DDRGKIKLSMKVVD 691 D +GKI LS+K V+ Sbjct: 64 DPKGKIGLSIKQVN 77 >gi|29144270|ref|NP_807612.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29139907|gb|AAO71472.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 776 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|302522933|ref|ZP_07275275.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces sp. SPB78] gi|302431828|gb|EFL03644.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces sp. SPB78] Length = 749 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E + +G V V FGAFV +DGLVH+S LS E V +VVK Sbjct: 637 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 696 GDIVKVKVLDVDLPRKRISLTLRLDDE 722 >gi|168465228|ref|ZP_02699120.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632126|gb|EDX50610.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 777 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium acetobutylicum ATCC 824] gi|50401136|sp|Q97I09|ISPH_CLOAB RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase gi|15024823|gb|AAK79811.1|AE007693_9 penicillin tolerance LytB domain/S1 ribosomal protein fusion [Clostridium acetobutylicum ATCC 824] Length = 642 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P + D ++ IG V I+E + K KI +S A + +E Sbjct: 420 FIPASHVELFHVDNLKEYIGKSFDV--AIIEYSTKK------RQTKIVASRRALLSKEKE 471 Query: 609 MIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + ++ + E ++ +G+V ++ DFGAFV G DGL+H+S++S RV K +DV+K G Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGV-DGLLHVSEISWGRVEKPADVLKIG 530 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + V +L D + K+ LS+K + +N Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTEN 557 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683 G+V++ DFGAFV DGLVHIS++S +R+AK SD + G+ + K+L+ + KI Sbjct: 574 GKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKI 633 Query: 684 KLSMKVVDQ 692 LS++ V++ Sbjct: 634 GLSIREVEE 642 >gi|16762783|ref|NP_458400.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|56415419|ref|YP_152494.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364349|ref|YP_002143986.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213163102|ref|ZP_03348812.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213852068|ref|ZP_03381600.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824836|ref|ZP_06544279.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25304123|pir||AB0998 probable transcription accessory protein STY4292 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505089|emb|CAD08110.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|56129676|gb|AAV79182.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095826|emb|CAR61399.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 776 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 480 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|224368352|ref|YP_002602515.1| 30S ribosomal protein S1 [Desulfobacterium autotrophicum HRM2] gi|223691068|gb|ACN14351.1| RpsA1 [Desulfobacterium autotrophicum HRM2] Length = 486 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--- 678 I G V K+M +GAF+ +G+ HIS+LS RV K +VVK+G+TV VKLL + Sbjct: 207 ILTGSVTKLMPYGAFIELVPGVEGMAHISELSWSRVDKAEEVVKQGETVKVKLLKIETKE 266 Query: 679 --DRGKIKLSMK 688 D KI LS+K Sbjct: 267 GADMPKISLSIK 278 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+VV++ FGAFV DGLVH+S++S T R+ K DVV G+ V V + D D ++ + Sbjct: 301 GKVVRLAPFGAFVEIAPGMDGLVHLSEMSHTRRIVKADDVVTLGEMVQVVVKDIDIEKRR 360 Query: 683 IKLSMK 688 I LS+K Sbjct: 361 ISLSIK 366 >gi|213647810|ref|ZP_03377863.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 774 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 651 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 710 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 711 KRIALTMRLDEQ 722 >gi|167990707|ref|ZP_02571806.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168260772|ref|ZP_02682745.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197264071|ref|ZP_03164145.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|308065953|ref|NP_462407.2| RNase R [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242326|gb|EDY24946.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205330816|gb|EDZ17580.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350471|gb|EDZ37102.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312914528|dbj|BAJ38502.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226554|gb|EFX51604.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131863|gb|ADX19293.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 776 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|71064708|ref|YP_263435.1| hypothetical protein Psyc_0127 [Psychrobacter arcticus 273-4] gi|71037693|gb|AAZ18001.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 840 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I +G V V FG F+ +DGLVHISQ++ + VA + VK Sbjct: 672 RDDVNSIKDLSE-GMILEGVVTNVTAFGCFIDVGVHQDGLVHISQMANDFVADPMNRVKP 730 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697 GD V V+++ D+ RG+I SMK + +P Sbjct: 731 GDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762 >gi|240168008|ref|ZP_04746667.1| 30S ribosomal protein S1 [Mycobacterium kansasii ATCC 12478] Length = 481 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|239927485|ref|ZP_04684438.1| transcription accessory protein [Streptomyces ghanaensis ATCC 14672] gi|291435829|ref|ZP_06575219.1| transcription accessory protein [Streptomyces ghanaensis ATCC 14672] gi|291338724|gb|EFE65680.1| transcription accessory protein [Streptomyces ghanaensis ATCC 14672] Length = 792 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E + I+D+ + +G V V FGAFV +DGLVH+S +S V DVV Sbjct: 638 AFKEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVV 696 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 K GD V VK+LD D R +I L++++ D+ G+ Sbjct: 697 KPGDIVKVKVLDVDIPRKRISLTLRLDDEAAGQ 729 >gi|197334228|ref|YP_002154889.1| protein YhgF [Vibrio fischeri MJ11] gi|197315718|gb|ACH65165.1| protein YhgF [Vibrio fischeri MJ11] Length = 771 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + +++D+ E+ + +G V V +FGAFV +DGLVHIS LS V+ +VVK GD Sbjct: 639 VNTVSDL-ELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 698 VKVKVMEVDVQRKRIALSMRLNDK 721 >gi|291534309|emb|CBL07421.1| Ribosomal protein S1 [Roseburia intestinalis M50/1] Length = 303 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAF++ GLVHISQ+ R+ K S+V+KEG V K+L+ +D Sbjct: 197 VLEGTVETLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTNDN- 255 Query: 682 KIKLSMKVVDQ 692 KI LSMK +++ Sbjct: 256 KISLSMKALEE 266 >gi|317050828|ref|YP_004111944.1| Tex-like protein [Desulfurispirillum indicum S5] gi|316945912|gb|ADU65388.1| Tex-like protein [Desulfurispirillum indicum S5] Length = 729 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++++G V V+DFGAFV DGLVHIS+L+ V +VV G+ V V++L Sbjct: 655 EAGQVFEGVVRNVVDFGAFVDIGLKNDGLVHISELADTFVKNPHEVVSVGNRVRVRVLSI 714 Query: 678 D-DRGKIKLSMK 688 D RG++ LSMK Sbjct: 715 DKSRGRLSLSMK 726 >gi|225872519|ref|YP_002753974.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793377|gb|ACO33467.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC 51196] Length = 753 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 2/90 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E ++ ITD+ E + +G V V FGAFV +DGLVHIS+LS + + S+ VK G Sbjct: 636 EGVKEITDLKE-GMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPSEAVKAG 694 Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696 V VK+L D + K I LSM+ + + G+ Sbjct: 695 QIVRVKVLSADAKTKRIALSMRALMEPIGR 724 >gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626] Length = 441 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V+ I +G V K++ FGAFV +GLVHIS+++ + V S V GD V VK+++ D Sbjct: 291 VDAIVEGTVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEID 350 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LSMK + G Sbjct: 351 LDRRRISLSMKAAAETLG 368 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V +++FGAFV G DGLVHIS+LS V S+VVK G V V++LD D +R Sbjct: 210 LQGTVSSIVEFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRE 268 Query: 682 KIKLSMKVVDQNTGKP 697 +I L +K Q T P Sbjct: 269 RISLGLK---QTTEDP 281 >gi|162455512|ref|YP_001617879.1| hypothetical protein sce7230 [Sorangium cellulosum 'So ce 56'] gi|161166094|emb|CAN97399.1| rpsA3 [Sorangium cellulosum 'So ce 56'] Length = 683 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQL 652 ++ + E E+ + ++T + E ++KG V KV+ +G FV G +GLVH+S+ Sbjct: 380 VSRRKMLEEESRKARTEALTSI-EPGSLHKGIVRKVVAWGVFVALPDAGGVEGLVHMSEA 438 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 S +R AK +D+ K G + VK+L DD+GK+ LS K Sbjct: 439 SHDRGAKLADLFKPGAEIDVKVLRVDDKGKLWLSRKAA 476 >gi|59710727|ref|YP_203503.1| transcriptional accessory protein [Vibrio fischeri ES114] gi|59478828|gb|AAW84615.1| predicted transcriptional accessory protein [Vibrio fischeri ES114] Length = 771 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + +++D+ E+ + +G V V +FGAFV +DGLVHIS LS V+ +VVK GD Sbjct: 639 VNTVSDL-ELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 698 VKVKVMEVDVQRKRIALSMRLNDK 721 >gi|83588965|ref|YP_428974.1| RNA binding S1 [Moorella thermoacetica ATCC 39073] gi|83571879|gb|ABC18431.1| RNA binding S1 [Moorella thermoacetica ATCC 39073] Length = 130 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V + FGAFV G GLVHIS+++ V +D VKE D V VK+++ D Sbjct: 5 VGTVLEGVVSGITKFGAFVELPGGLTGLVHISEVADTYVKDVNDYVKEKDRVRVKVINID 64 Query: 679 DRGKIKLSMK 688 ++GKI LS+K Sbjct: 65 EKGKIGLSIK 74 >gi|260550802|ref|ZP_05825009.1| transcriptional accessory protein [Acinetobacter sp. RUH2624] gi|260406112|gb|EEW99597.1| transcriptional accessory protein [Acinetobacter sp. RUH2624] Length = 795 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDAERNRVNLSMRA 724 >gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030] gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030] Length = 491 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A +E + +RS E ++ KG V +++FGAFV G DGLVH+S+LS + Sbjct: 184 SRRAYLEETQSAVRSDFLHQLEKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 242 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV GD V V++LD D DR ++ LS+K ++ Sbjct: 243 IDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV+ G V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|289579282|ref|YP_003477909.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9] gi|297545433|ref|YP_003677735.1| RNA binding S1 domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528995|gb|ADD03347.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9] gi|296843208|gb|ADH61724.1| RNA binding S1 domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 140 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V + +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DSSGRISLSIK 74 >gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1] gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1] Length = 481 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV+ GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|318079275|ref|ZP_07986607.1| transcriptional accessory protein [Streptomyces sp. SA3_actF] Length = 741 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E + +G V V FGAFV +DGLVH+S LS E V +VVK Sbjct: 621 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 679 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 680 GDIVKVKVLDVDLPRKRISLTLRLDDE 706 >gi|260655105|ref|ZP_05860593.1| general stress protein 13 [Jonquetella anthropi E3_33 E1] gi|260630216|gb|EEX48410.1| general stress protein 13 [Jonquetella anthropi E3_33 E1] Length = 144 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 44/76 (57%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G V ++M +GAFV + ++HISQLS + K DV++ V K+ D+RG Sbjct: 17 VVTGTVEQIMPYGAFVRLSDGQRAMIHISQLSHRFIKKVEDVLQLNQEVKAKVTKIDERG 76 Query: 682 KIKLSMKVVDQNTGKP 697 +I LSMKV+++ P Sbjct: 77 RIDLSMKVLEEPMPAP 92 >gi|16422063|gb|AAL22366.1| putative RNase R [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248659|emb|CBG26497.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995724|gb|ACY90609.1| putative RNase R [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160047|emb|CBW19566.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990356|gb|AEF09339.1| putative RNase R [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 775 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LST+ V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3] gi|260664557|ref|ZP_05865409.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US] gi|282932512|ref|ZP_06337937.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1] gi|313471977|ref|ZP_07812469.1| ribosomal protein S1 [Lactobacillus jensenii 1153] gi|238832086|gb|EEQ24404.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3] gi|239529091|gb|EEQ68092.1| ribosomal protein S1 [Lactobacillus jensenii 1153] gi|260561622|gb|EEX27594.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US] gi|281303461|gb|EFA95638.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1] Length = 402 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G+V + FGAFV GLVH+S++S +RV K SDV+K G+TV VK+L+ + D Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPD 343 Query: 680 RGKIKLSMK 688 +I LS+K Sbjct: 344 EKRISLSIK 352 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 I +G+V ++ +FGAFV G DGLVHIS++S + + K SDV+K G V VK++ DDR Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 259 HRISLSIK 266 >gi|224543167|ref|ZP_03683706.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM 15897] gi|224523954|gb|EEF93059.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM 15897] Length = 716 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++ D+ V+ +G V V+DFGAFV DGLVHIS++S R+ SDVV Sbjct: 631 RQDILTLEDL-HVHDKLEGTVRNVVDFGAFVDIGLHEDGLVHISKMSKNRIKHPSDVVSV 689 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693 GD T WV +D + R K++L+M +D N Sbjct: 690 GDIVTTWVDTID-EQRHKVQLTM--IDPN 715 >gi|169794453|ref|YP_001712246.1| hypothetical protein ABAYE0261 [Acinetobacter baumannii AYE] gi|169147380|emb|CAM85241.1| conserved hypothetical protein [Acinetobacter baumannii AYE] Length = 794 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMR 723 >gi|288572996|ref|ZP_06391353.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568737|gb|EFC90294.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 160 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 43/76 (56%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G V +VM +GAFV + +VHISQLS + SDVV + K++ DD+G Sbjct: 18 VVTGVVEQVMPYGAFVRLSTGQRAMVHISQLSHNFIKNVSDVVSAEQEITAKVIKIDDKG 77 Query: 682 KIKLSMKVVDQNTGKP 697 +I LS+K + + +P Sbjct: 78 RIDLSIKAMSEPPARP 93 >gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571] gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571] Length = 403 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 +++G+V + +FGAFV GLVH+S++S + V K SDV+K TV VK+L+ D D Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMKVVDQNT 694 R +I LS+K D N Sbjct: 345 R-RISLSIKAADSNA 358 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V + +G+V ++ +FGAF+ G DGLVHIS++S + V K SDV+K G V VK++ Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|153837872|ref|ZP_01990539.1| protein YhgF [Vibrio parahaemolyticus AQ3810] gi|149748735|gb|EDM59580.1| protein YhgF [Vibrio parahaemolyticus AQ3810] Length = 773 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S+ D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724 >gi|116618382|ref|YP_818753.1| transcriptional accessory protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097229|gb|ABJ62380.1| Transcriptional accessory protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 730 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G V V+DFGAFV DGLVHIS++ST R+ S++V GD V V ++D D+ R + Sbjct: 662 QGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHPSEIVSVGDIVEVWIVDVDEKRNR 721 Query: 683 IKLSM 687 I L+M Sbjct: 722 IGLTM 726 >gi|168704591|ref|ZP_02736868.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246] Length = 618 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 3/73 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681 +G+V K+ +FG FV +GL+HIS+L+ +V +VVK GD V VK+L D DR Sbjct: 477 RGKVTKLTNFGVFVQLEEGLEGLLHISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDR- 535 Query: 682 KIKLSMKVVDQNT 694 KI LSMK VD NT Sbjct: 536 KIGLSMKNVDDNT 548 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 +N + G+VV +M +GAFV +GLVHIS++S +R+A ++V+ GD V V++L+ Sbjct: 297 INSRHTGEVVNIMPYGAFVKLEPGIEGLVHISEMSWIKRIADPKEIVQIGDKVEVQVLNI 356 Query: 678 D-DRGKIKLSMKVVDQN 693 + D+ +I L MK N Sbjct: 357 NHDKKEISLGMKQCQSN 373 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +I G V + +FGAFV G DGL+HI+ + RV DVV+ T+ V +L Sbjct: 211 EVGQIRTGVVKNIAEFGAFVDLGGI-DGLLHITDMGWHRVTNPRDVVQIDQTLEVYILHI 269 Query: 678 D-DRGKIKLSMK 688 D ++ KI LS+K Sbjct: 270 DREKEKIALSLK 281 >gi|28896924|ref|NP_796529.1| hypothetical protein VP0150 [Vibrio parahaemolyticus RIMD 2210633] gi|260365889|ref|ZP_05778383.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260877824|ref|ZP_05890179.1| protein YhgF [Vibrio parahaemolyticus AN-5034] gi|260895527|ref|ZP_05904023.1| protein YhgF [Vibrio parahaemolyticus Peru-466] gi|28805132|dbj|BAC58413.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088488|gb|EFO38183.1| protein YhgF [Vibrio parahaemolyticus Peru-466] gi|308090101|gb|EFO39796.1| protein YhgF [Vibrio parahaemolyticus AN-5034] gi|308113482|gb|EFO51022.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 773 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S+ D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724 >gi|19114165|ref|NP_593253.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe 972h-] gi|3913431|sp|O42643|PRP22_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 gi|2661607|emb|CAA15715.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe] Length = 1168 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668 + + P + IY G V + DFGAFV G R DGLVHIS + R+ S+ V G Sbjct: 200 LLNAPTLYGIYSGVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQ 259 Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696 V+VK++ D+ K I LSMK V+Q TG+ Sbjct: 260 PVFVKVIRIDESAKRISLSMKEVNQVTGE 288 >gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4] gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4] Length = 385 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V ++ +FGAFV G DGLVHISQL+ RV SD+V EGD V VK+L D D + Sbjct: 194 EGTVQRLTNFGAFVDVGGV-DGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSER 252 Query: 683 IKLSMK 688 + LS+K Sbjct: 253 VSLSIK 258 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V +++ FGAFV +GLVHISQ++ + S+V+ EG+ V VK+LD + D Sbjct: 277 VIEGTVRRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDD 336 Query: 681 GKIKLSMK 688 +I LS++ Sbjct: 337 KRISLSIR 344 >gi|328471699|gb|EGF42576.1| hypothetical protein VP10329_01050 [Vibrio parahaemolyticus 10329] Length = 773 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S+ D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724 >gi|260556886|ref|ZP_05829103.1| transcriptional accessory protein [Acinetobacter baumannii ATCC 19606] gi|260409492|gb|EEX02793.1| transcriptional accessory protein [Acinetobacter baumannii ATCC 19606] Length = 794 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724 >gi|260902551|ref|ZP_05910946.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308109731|gb|EFO47271.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 773 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + S+ D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724 >gi|85710776|ref|ZP_01041837.1| Transcriptional accessory protein [Idiomarina baltica OS145] gi|85695180|gb|EAQ33117.1| Transcriptional accessory protein [Idiomarina baltica OS145] Length = 768 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E +G V V +FGAFV +DGLVHIS L+ V+ D+VK Sbjct: 638 KEGVEKVSDL-EPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALADTFVSDPRDIVKA 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V V++++ D DR +I LSM+ DQ Sbjct: 697 GDIVTVRVVEVDIDRKRIGLSMRKDDQ 723 >gi|116626034|ref|YP_828190.1| RNA-binding S1 domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229196|gb|ABJ87905.1| RNA binding S1 domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 749 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE +R I D+ + +G V V FGAF+ DGLVH+SQL+ V S+VVK Sbjct: 631 REDVREIADL-QPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKA 689 Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697 G V V+++ D + K I LSMK +D +P Sbjct: 690 GQIVKVQVISADPKTKRIALSMKALDAAPPEP 721 >gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001] gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002] gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007] gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008] gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009] gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010] gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011] gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001] gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002] gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007] gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008] gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009] gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010] gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011] Length = 392 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 122 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 180 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 181 ERVSLSLKATQED 193 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD Sbjct: 196 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 255 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693 VK++D D +R +I LS+K +++ Sbjct: 256 MVKVIDIDLERRRISLSLKQANED 279 >gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304] gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304] Length = 494 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T VP +I KG+V K++ FG FV +GL+HIS+L+ V VVK G+ V+VK Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVDNPETVVKPGEEVFVK 347 Query: 674 LLDFD-DRGKIKLSMK 688 ++D D DR +I LS+K Sbjct: 348 VIDVDLDRRRISLSLK 363 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I +G + +++FGAFV G DGL+H+S+LS + + S+VVK GD V V++LD D D Sbjct: 210 QIREGTISSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268 Query: 680 RGKIKLSMK 688 R +I LS+K Sbjct: 269 RERISLSLK 277 >gi|260654143|ref|ZP_05859633.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1] gi|260631128|gb|EEX49322.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1] Length = 500 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 7/85 (8%) Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 N+ KGQ VV++ DFGAFV +GL+HISQLS++RV K DV+ EG V ++ Sbjct: 363 NRYAKGQDVQVKVVRLADFGAFVELEEGVEGLIHISQLSSKRVDKPKDVLTEGQEVTARI 422 Query: 675 LDFD-DRGKIKLSMKVVDQ-NTGKP 697 L+ + +I+LS++ ++ GKP Sbjct: 423 LEVNPTERRIRLSLRALEAPEAGKP 447 >gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99] gi|183982447|ref|YP_001850738.1| ribosomal protein S1 RpsA [Mycobacterium marinum M] gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99] gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M] Length = 481 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|120596942|ref|YP_961516.1| RNA-binding S1 domain-containing protein [Shewanella sp. W3-18-1] gi|120557035|gb|ABM22962.1| RNA binding S1 domain protein [Shewanella sp. W3-18-1] Length = 813 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + ++ VVK GD V VK+++ Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ +DQN + Sbjct: 741 VDVERRRIGLSMRLDEAIDQNNAQ 764 >gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977] gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus] Length = 481 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|160945504|ref|ZP_02092730.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii M21/2] gi|158443235|gb|EDP20240.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii M21/2] Length = 182 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +++G+V V FGAFV R G+VHIS++S E V + V+ +GD V V++++ Sbjct: 4 EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDINTVLHDGDAVKVQVINI 63 Query: 678 DDRGKIKLSMK 688 GKI LS+K Sbjct: 64 APDGKIALSIK 74 >gi|93004967|ref|YP_579404.1| RNA binding S1 [Psychrobacter cryohalolentis K5] gi|92392645|gb|ABE73920.1| RNA binding S1 [Psychrobacter cryohalolentis K5] Length = 840 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + SI D+ E +G V V FG F+ +DGLVHISQ++ + VA + VK Sbjct: 672 REDVNSIKDLSE-GMTLEGVVTNVTAFGCFIDVGVHQDGLVHISQMANDFVADPMNRVKP 730 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697 GD V V+++ D+ RG+I SMK + +P Sbjct: 731 GDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762 >gi|331696880|ref|YP_004333119.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190] gi|326951569|gb|AEA25266.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190] Length = 831 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 13/119 (10%) Query: 587 IDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDFG 634 +DD + + LAE+E R R+ T V+ I +G V V FG Sbjct: 610 VDDTVGLPTVTDILAELEKPGRDPRPAFRTATFAEGVHTIGDLRPGMLLEGVVTNVAAFG 669 Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 AFV +DGLVH+S +ST V+ +VVK GD V VK+LD D+ R +I L++++ D+ Sbjct: 670 AFVDVGVHQDGLVHVSAMSTSFVSDPREVVKSGDVVRVKVLDVDEPRKRISLTLRLDDE 728 >gi|184159741|ref|YP_001848080.1| transcriptional accessory protein [Acinetobacter baumannii ACICU] gi|239502002|ref|ZP_04661312.1| transcriptional accessory protein [Acinetobacter baumannii AB900] gi|332850219|ref|ZP_08432582.1| Tex-like protein [Acinetobacter baumannii 6013150] gi|332868814|ref|ZP_08438419.1| Tex-like protein [Acinetobacter baumannii 6013113] gi|332874243|ref|ZP_08442163.1| Tex-like protein [Acinetobacter baumannii 6014059] gi|183211335|gb|ACC58733.1| Transcriptional accessory protein [Acinetobacter baumannii ACICU] gi|322509654|gb|ADX05108.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323519674|gb|ADX94055.1| transcriptional accessory protein [Acinetobacter baumannii TCDC-AB0715] gi|332730863|gb|EGJ62171.1| Tex-like protein [Acinetobacter baumannii 6013150] gi|332733128|gb|EGJ64326.1| Tex-like protein [Acinetobacter baumannii 6013113] gi|332737527|gb|EGJ68434.1| Tex-like protein [Acinetobacter baumannii 6014059] Length = 782 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K] gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K] Length = 403 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V ++ +FGAFV G DGLVH+S++S + + + SDV++ G V VK+L D ++ Sbjct: 207 IVEGEVARLTNFGAFVDLGGV-DGLVHVSEISYDHINQPSDVLEVGQNVKVKILSLDQEK 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I + V +G V ++ FGAFV +GLVHISQ+S + +A +DV++EG TV V Sbjct: 283 IAEKAPVGSTLEGTVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQTVQV 342 Query: 673 KLLDFD-DRGKIKLSMKVVDQ 692 K+L D ++ ++ LS+K + + Sbjct: 343 KVLSVDPEQQRLGLSIKALQE 363 >gi|227431684|ref|ZP_03913715.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352557|gb|EEJ42752.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 730 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G V V+DFGAFV DGLVHIS++ST R+ S++V GD V V ++D D+ R + Sbjct: 662 QGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHPSEIVSVGDIVEVWIVDVDEKRNR 721 Query: 683 IKLSM 687 I L+M Sbjct: 722 IGLTM 726 >gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus] Length = 481 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|326391645|ref|ZP_08213172.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992298|gb|EGD50763.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 143 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V + +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DANGRISLSIK 74 >gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi] gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia malayi] Length = 249 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 9/228 (3%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ + R DGR +R+++ ++G+ + GS+ +G+T+ + V G E +Q Sbjct: 2 SIISEHGFRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 L R Y+ +T E RR + RL +A + T +P + + Sbjct: 61 LLE--DRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAI-LTENYPRSQI 117 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + E+ ++DGS A V +LAL DAGVP+ VA + G + D++ E Sbjct: 118 DVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGG---LACVDVNSRE 174 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 + +G + T SG A+ M + +N +++ L A++ H+ Sbjct: 175 E-MGIVPRLTVATISGQDAVVMAELQNRLHKNHLMVILGNARKATAHV 221 >gi|160878496|ref|YP_001557464.1| RNA-binding S1 domain-containing protein [Clostridium phytofermentans ISDg] gi|160427162|gb|ABX40725.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg] Length = 722 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679 I KG V V+DFGAFV +DGLVHISQLS ++ K D+V GD V VK+L D Sbjct: 653 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQLSKQKFVKHPLDIVSVGDIVEVKVLSVDVS 712 Query: 680 RGKIKLSM 687 + +I+LSM Sbjct: 713 KKRIQLSM 720 >gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13] gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239] gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13] gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239] Length = 248 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R GR E +R + + GS L GDT+ + ++ +E+ L G+ Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425 YN LP +T +++++ R EI RL RA+ + A T+ I Sbjct: 57 GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + ++ GS +AL+DA PI V+ +++G+V G++ I Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKI 172 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 + D+ +EDH+ +D V T+ G +Q + G S + L A++G ++ Sbjct: 173 L--DLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230 Query: 534 EMSKVLSESRLQLG 547 L L +G Sbjct: 231 AQKDALKTDSLWIG 244 >gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] Length = 248 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 13/224 (5%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ ++ +R DGR +R I VG+L++ GS+ F+ I+ G R E + Sbjct: 12 LITEEGIRTDGRLPHEMRPIKMMVGVLEKADGSA-FVEWGGNRILAAVFGPR--EVHPKH 68 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 + R YN P +T E R G P RR I ++ R A+ P + + I Sbjct: 69 MVLPDRALIRARYNMAPFSTPERRRPG-PDRRSIELSKVIREALKPAIFAENYPGSVIDI 127 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 E+ SD + +A + +SLAL AGV + V+ ++G V FI++ D + DED Sbjct: 128 FVEVLRSDAGTRVAGINAASLALASAGVAMRGLVSACSVGRV---GSFIVV-DPNHDEDM 183 Query: 486 LGHMDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRG 527 G D +A IT +Q D G +SE AL +R Sbjct: 184 WGDSDMPLAMMMESEEITLLQAD---GTLSEEEFKEALDLGRRA 224 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 17/211 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69 RP+K+ G + ++DG+ +G +LA V R + P + Y ++ Sbjct: 29 RPIKMMVG-VLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALIRARYNMAPFS 87 Query: 70 VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCYKNET-QVIINVMQHDLESSPH 127 + RR P I +S++I +++P +F++ Y + + V++ D + Sbjct: 88 TPE------RRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSD--AGTR 139 Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186 V + AAS AL +G+ G V V + V++P DED G D+ ++ ++ Sbjct: 140 VAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSDMPLAMMMESEE 199 Query: 187 MVELEAN-QLSEDVVLDAIIFGHNECKPVIE 216 + L+A+ LSE+ +A+ G + V E Sbjct: 200 ITLLQADGTLSEEEFKEALDLGRRAIRFVYE 230 >gi|54035138|gb|AAH84130.1| LOC495036 protein [Xenopus laevis] Length = 77 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 ++PE+++I+KG+V V ++GAF+ G R GLVH S +S+ V + S+VV G+ VWVK Sbjct: 3 NLPELHEIFKGEVASVTEYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVWVK 62 Query: 674 LL 675 ++ Sbjct: 63 VI 64 >gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK] gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1P [Mycobacterium sp. Spyr1] gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK] gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium sp. Spyr1] Length = 481 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQNTGK 696 ++ LS+K ++ + Sbjct: 270 ERVSLSLKATQEDPWR 285 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV+ GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|333023225|ref|ZP_08451289.1| putative transcription accessory protein [Streptomyces sp. Tu6071] gi|332743077|gb|EGJ73518.1| putative transcription accessory protein [Streptomyces sp. Tu6071] Length = 853 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E + +G V V FGAF+ +DGLVH+S LS E V +VVK Sbjct: 649 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSREFVKDPREVVKP 707 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 708 GDIVKVKVLDVDLPRKRISLTLRLDDE 734 >gi|238020739|ref|ZP_04601165.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147] gi|237867719|gb|EEP68725.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147] Length = 765 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + + D+ +V + +G V V +FGAFV +DGLVHIS L+ V DVVK G Sbjct: 627 EGVHDMNDL-QVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALADRFVQDPRDVVKAG 685 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 686 DVVKVKVLEVDVPRKRIALTMRLNDE 711 >gi|167036685|ref|YP_001664263.1| hypothetical protein Teth39_0258 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115112|ref|YP_004185271.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855519|gb|ABY93927.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928203|gb|ADV78888.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 140 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V + +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DANGRISLSIK 74 >gi|213158974|ref|YP_002320972.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057] gi|215482042|ref|YP_002324224.1| Protein tex [Acinetobacter baumannii AB307-0294] gi|301345046|ref|ZP_07225787.1| hypothetical protein AbauAB0_02357 [Acinetobacter baumannii AB056] gi|301512670|ref|ZP_07237907.1| hypothetical protein AbauAB05_13836 [Acinetobacter baumannii AB058] gi|301595103|ref|ZP_07240111.1| hypothetical protein AbauAB059_04816 [Acinetobacter baumannii AB059] gi|213058134|gb|ACJ43036.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057] gi|213985826|gb|ACJ56125.1| Protein tex [Acinetobacter baumannii AB307-0294] Length = 782 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|126643235|ref|YP_001086219.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978] gi|126389119|gb|ABO13617.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978] Length = 561 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSIT---DVPEVNKIYKGQ--- 626 I+ Q A+ +DD + LAE+E R R+ D+ EV ++ +G Sbjct: 366 IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEVAQLTEGMQLE 425 Query: 627 --VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 V V +FGAFV +DGLVHIS+L+ E V+ VVK G V V+++ D +R ++ Sbjct: 426 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVMQVDVERNRV 485 Query: 684 KLSMK 688 LSM+ Sbjct: 486 NLSMR 490 >gi|28209968|ref|NP_780912.1| hypothetical protein CTC00200 [Clostridium tetani E88] gi|28202403|gb|AAO34849.1| ribosomal protein [Clostridium tetani E88] Length = 136 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G VV + +FGAFV G + GLVHIS++S V D +KE D V VK++ D++G Sbjct: 8 ILEGTVVNITNFGAFVEVDG-KTGLVHISEVSDSYVKDIKDYLKENDKVKVKVISVDEKG 66 Query: 682 KIKLSMKVVD--QNTGKPI 698 KI LS+K + + + +PI Sbjct: 67 KISLSIKQAEPQKKSCRPI 85 >gi|332653049|ref|ZP_08418794.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae bacterium D16] gi|332518195|gb|EGJ47798.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae bacterium D16] Length = 648 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 T +V + ++VK+M FGAF DGL+HISQ++ R+ K DV+ EGD V VK Sbjct: 557 TSTYQVGDVANVRIVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPGDVLAEGDKVDVK 616 Query: 674 LLDFD-DRGKIKLSMK 688 + D D + K+ LS++ Sbjct: 617 ITDVDMENKKVSLSIR 632 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E K Y G V + +GAFV G DG+VHIS+LS R+ S+VVK GDTV V ++ Sbjct: 476 EDGKRYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVDVYVISA 534 Query: 678 D-DRGKIKLSMK 688 D ++ KI L MK Sbjct: 535 DPEKKKISLGMK 546 >gi|149190642|ref|ZP_01868910.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1] gi|148835525|gb|EDL52494.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1] Length = 773 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I+D+ E + +G V V +FGAFV +DGLVHIS L+ + VA +VVK G Sbjct: 640 EGVNKISDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVADPREVVKAG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 699 DIVKVKVMEVDAARKRIGLSMRLNDE 724 >gi|301155420|emb|CBW14886.1| predicted transcriptional accessory protein [Haemophilus parainfluenzae T3T1] Length = 770 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VVK GD V VK+L+ D R +I L+M++ + +N GK Sbjct: 685 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731 >gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4] Length = 298 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 604 EAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 EAARE + T+ EV + KG V + D+GAFV GL+HISQ+ST+R+ Sbjct: 175 EAAREKKQEETNKKIAKCEVGAVMKGTVETLKDYGAFVELENGLTGLLHISQISTKRIKH 234 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 V+KEG V VK++ + KI LSMK Sbjct: 235 PGAVLKEGQEVRVKIISTANN-KISLSMK 262 >gi|41582344|gb|AAS07958.1| S1 RNA binding domain protein [uncultured marine bacterium 463] Length = 772 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAF+ +DGLVHIS L+ + V DVVK GD V VK+++ D R Sbjct: 653 VLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDAPR 712 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ D+ Sbjct: 713 KRIGLSMRLSDK 724 >gi|22537308|ref|NP_688159.1| 30S ribosomal protein S1 [Streptococcus agalactiae 2603V/R] gi|25011274|ref|NP_735669.1| 30S ribosomal protein S1 [Streptococcus agalactiae NEM316] gi|76786829|ref|YP_329853.1| 30S ribosomal protein S1 [Streptococcus agalactiae A909] gi|22534178|gb|AAN00032.1|AE014244_9 ribosomal protein S1 [Streptococcus agalactiae 2603V/R] gi|23095698|emb|CAD46884.1| Unknown [Streptococcus agalactiae NEM316] gi|76561886|gb|ABA44470.1| ribosomal protein S1 [Streptococcus agalactiae A909] gi|319745155|gb|EFV97478.1| 30S ribosomal protein S1 [Streptococcus agalactiae ATCC 13813] Length = 400 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 341 ERVSLSMKALEE 352 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 192 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 >gi|296269654|ref|YP_003652286.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM 43833] gi|296092441|gb|ADG88393.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833] Length = 784 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 21/155 (13%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIE------------ 604 +R ++ G IR ++ TG + +DD + + L E+E Sbjct: 581 VRRILEATGMGIRSLIGNTGVLRSLDPARFVDDRFGLPTVTDILKELEKPGRDPRPTFTT 640 Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A +E + +I D+ + + +G V V FGAFV +DGLVH+S ++ V +V Sbjct: 641 AAFKEGVETIEDL-KPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMADRFVKDPREV 699 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 VK GD V VK+LD D R +I L++++ D+ +P Sbjct: 700 VKPGDIVRVKVLDVDLARKRISLTLRLDDEAARRP 734 >gi|295116041|emb|CBL36888.1| Ribosomal protein S1 [butyrate-producing bacterium SM4/1] Length = 311 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E R R + EV + +G V + D+GAFV GLVHIS++S++R+ V Sbjct: 196 EKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLSGLVHISRISSQRIKHPGVV 255 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +KEG TV VK++ D GKI LSMK Sbjct: 256 LKEGQTVKVKIIGIKD-GKISLSMK 279 >gi|170724523|ref|YP_001758549.1| RNA-binding S1 domain-containing protein [Shewanella woodyi ATCC 51908] gi|169809870|gb|ACA84454.1| RNA binding S1 domain protein [Shewanella woodyi ATCC 51908] Length = 802 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 4/94 (4%) Query: 605 AAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A +E + ++D+ PE+ I +G V V +FGAFV +DGLVHIS L+ + V+ + Sbjct: 661 AFKEGVEKVSDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTI 718 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 VK GD V VK+++ D +R +I LSM++ ++ + K Sbjct: 719 VKAGDVVKVKVMEVDAERKRIALSMRLDEKPSEK 752 >gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1] gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1] Length = 493 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 216 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 274 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 275 RERVSLSLKATQED 288 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FG+FV +GLVHIS+L+ V VV+ D V VK++D Sbjct: 298 QIGQIVPGKVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 357 Query: 678 D-DRGKIKLSMK 688 D +R +I LS+K Sbjct: 358 DLERRRISLSLK 369 >gi|262375129|ref|ZP_06068363.1| transcriptional accessory protein [Acinetobacter lwoffii SH145] gi|262310142|gb|EEY91271.1| transcriptional accessory protein [Acinetobacter lwoffii SH145] Length = 789 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 13/125 (10%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSIT---DVPEVNKIYKGQ--- 626 I+ Q A+ D+ + LAE+E R R+ D+ EV ++ +G Sbjct: 592 IIRQVNAEEFADEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITEVAQLSEGMQLE 651 Query: 627 --VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 V V +FGAFV +DGLVHIS+L+ E VA VVK G V V++L+ D +R ++ Sbjct: 652 GVVTNVTNFGAFVDVGVHQDGLVHISELTNEFVADPHKVVKPGQIVQVRVLNVDAERNRV 711 Query: 684 KLSMK 688 LSM+ Sbjct: 712 NLSMR 716 >gi|283797557|ref|ZP_06346710.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1] gi|291074928|gb|EFE12292.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1] gi|295090842|emb|CBK76949.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10] Length = 311 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E R R + EV + +G V + D+GAFV GLVHIS++S++R+ V Sbjct: 196 EKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLSGLVHISRISSQRIKHPGVV 255 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +KEG TV VK++ D GKI LSMK Sbjct: 256 LKEGQTVKVKIIGIKD-GKISLSMK 279 >gi|254481001|ref|ZP_05094247.1| S1 RNA binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038796|gb|EEB79457.1| S1 RNA binding domain protein [marine gamma proteobacterium HTCC2148] Length = 772 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAF+ +DGLVHIS L+ + V DVVK GD V VK+++ D R Sbjct: 653 VLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDAPR 712 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ D+ Sbjct: 713 KRIGLSMRLSDK 724 >gi|148827760|ref|YP_001292513.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] gi|148719002|gb|ABR00130.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] Length = 770 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VVK GD V VK+L+ D R +I L+M++ + +N GK Sbjct: 685 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731 >gi|325576610|ref|ZP_08147328.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392] gi|325161173|gb|EGC73288.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392] Length = 772 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 573 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 627 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 628 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 686 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VVK GD V VK+L+ D R +I L+M++ + +N GK Sbjct: 687 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 733 >gi|332969908|gb|EGK08910.1| general stress protein 13 [Desmospora sp. 8437] Length = 124 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G+VV + FGAFV GLVHISQ+S++ V K D + GD+V K+L D G Sbjct: 9 VVTGEVVAIKPFGAFVKLETGETGLVHISQISSKFVEKVEDELTVGDSVKAKVLSIDSSG 68 Query: 682 KIKLSMKVV 690 KI LS+K + Sbjct: 69 KISLSIKAL 77 >gi|257869555|ref|ZP_05649208.1| ribosomal protein S1 [Enterococcus gallinarum EG2] gi|257803719|gb|EEV32541.1| ribosomal protein S1 [Enterococcus gallinarum EG2] Length = 402 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ ++ E E ++ + D+ E +I +G+V ++ DFGAFV G DGLVH+S++S Sbjct: 182 LSHKAVVEAEKEKQKEALLADLYEGQEI-EGKVARLTDFGAFVDLGGI-DGLVHVSEISH 239 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 V K SDV+ GDTV V++L D ++ ++ LS+K Sbjct: 240 AHVGKPSDVLSVGDTVNVRVLSVDPNKERVSLSIK 274 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GL+HISQ+S + +A +V+ EGD V VK+L+ + Sbjct: 290 VGSVLDGVVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLHEGDQVQVKVLEVN 349 Query: 679 DRG-KIKLSMK 688 +I LS+K Sbjct: 350 PTDHRIALSIK 360 >gi|46446398|ref|YP_007763.1| 30S ribosomal protein S1 [Candidatus Protochlamydia amoebophila UWE25] gi|46400039|emb|CAF23488.1| probable ribosomal protein S1 [Candidatus Protochlamydia amoebophila UWE25] Length = 587 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI V + KG+V K+ FGAFV +GL+H+++LS + K DVV +GD V Sbjct: 467 SIEKTMPVGSLVKGKVTKITAFGAFVELDSGIEGLIHVTELSDQAFGKVEDVVAKGDEVT 526 Query: 672 VKLLDFD-DRGKIKLSMK--VVDQN 693 K++ D + KI LS+K ++DQN Sbjct: 527 AKVIKLDPEHKKIALSIKEYLIDQN 551 Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G++V ++ +GAF+ +GL+H+S++S + + S+VVK+GD V +L + GK Sbjct: 306 GKIVNLLPYGAFIEIEPGIEGLIHVSEMSWVKNITDPSEVVKKGDDVEAIVLSVQKEEGK 365 Query: 683 IKLSMKVVDQN 693 I L +K + N Sbjct: 366 ISLGIKQTEHN 376 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V + DFG F+ G DGL+HI+ ++ +R+ S++V+ G + V +L D D+ Sbjct: 218 IREGVVKNITDFGVFLDLDGI-DGLLHITDMTWKRIKHPSEMVQLGQKLEVMILSVDKDK 276 Query: 681 GKIKLSMK 688 G++ L +K Sbjct: 277 GRVALGLK 284 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V+ I K ++ + ++GAFV +GL+HIS LS ++V+ S+V+++GD V +L Sbjct: 387 VSNIVKAEIRTLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAIILSV 446 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + KI L +K + N + I Sbjct: 447 DKESKKITLGVKQLSTNPWESI 468 >gi|303252099|ref|ZP_07338268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248294|ref|ZP_07530320.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649081|gb|EFL79268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855228|gb|EFM87405.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 775 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK GD Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNT 694 V VK+L+ D R +I L+M++ D+ T Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPT 733 >gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens MLS10] gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10] Length = 388 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + SI+ ++ G V ++ FG FV G DGLVHISQLS E + S+VV E Sbjct: 180 KETLHSIS----AGEVVSGTVQRITSFGVFVDIGGV-DGLVHISQLSHEHIETPSEVVSE 234 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD V VK+L D D +I LS+K Sbjct: 235 GDEVKVKVLSVDPDNERISLSIK 257 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V +++ FGAFV +GLVHISQ++ + +V+KEG+ V K+LD + Sbjct: 273 VGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDIN 332 Query: 679 -DRGKIKLSMKVVDQNT 694 D +I LS++ +++ T Sbjct: 333 LDDKRISLSIRALEEET 349 Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 V + KG V KV D A+V+ DG+V IS+L++ V K DV+ EG+ K++ Sbjct: 17 VGDVTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVI 73 >gi|313889154|ref|ZP_07822810.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844894|gb|EFR32299.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 125 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 43/67 (64%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V KV FGAFV + GLVHIS+++ V ++ + EGD V VK+L D++G Sbjct: 8 IVEGVVTKVAKFGAFVDLEDGKSGLVHISEIADTFVKDINNHISEGDEVKVKVLSIDEKG 67 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 68 KIALSIK 74 >gi|302388400|ref|YP_003824222.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] gi|302199028|gb|ADL06599.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] Length = 310 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G V + D+GAF++ GL+HISQ+S++R+ V+KEG TV VK++ Sbjct: 207 QVGTVMEGTVDSLKDYGAFINLENGLSGLLHISQISSQRIKHPGVVLKEGQTVKVKIISI 266 Query: 678 DDRGKIKLSMKVV 690 D KI LSMK V Sbjct: 267 ADH-KISLSMKAV 278 >gi|225568606|ref|ZP_03777631.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM 15053] gi|225162534|gb|EEG75153.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM 15053] Length = 228 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ + KG V + ++GAFV GLVH+SQ+S +RV DV+ GD V VK++ Sbjct: 125 KIGSVVKGTVESLQNYGAFVRLEDGLSGLVHVSQISQKRVKAPKDVLNTGDEVTVKIIGL 184 Query: 678 DDRGKIKLSMKVV 690 D GKI LSMK + Sbjct: 185 KD-GKISLSMKAL 196 >gi|295111344|emb|CBL28094.1| Ribosomal protein S1 [Synergistetes bacterium SGP1] Length = 516 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + DFG FV+ GA DGLVH+S+++ +R + D+ K+GD V VK++ D ++ Sbjct: 219 VLEGEVSSITDFGIFVNLKGAMDGLVHVSEITWKRNVRIRDLYKKGDKVTVKVIGLDKEK 278 Query: 681 GKIKLSMKVV 690 +I LS+K V Sbjct: 279 DRISLSIKQV 288 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + K +VV++ +FGAFV + L+HISQLS RV K DV+ EG V ++++ + Sbjct: 391 VGQDLKVKVVRLAEFGAFVEAEEGVEALIHISQLSNRRVEKPGDVLHEGQEVVARMIEVN 450 Query: 679 -DRGKIKLSMKVVDQNT 694 ++ +++LS+ +++ T Sbjct: 451 PEQRRMRLSLSALEEPT 467 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + KG V V DFGAFV +GL+HI +S R+ D ++G V V ++D + Sbjct: 305 VMKGVVTNVTDFGAFVELEPGIEGLIHIGDISWARIKHPRDTFRKGQEVEVLVMDIALSE 364 Query: 679 DRGKIKLSM 687 D K ++S+ Sbjct: 365 DPKKCRISL 373 >gi|170741136|ref|YP_001769791.1| RNA-binding S1 domain-containing protein [Methylobacterium sp. 4-46] gi|168195410|gb|ACA17357.1| RNA binding S1 domain protein [Methylobacterium sp. 4-46] Length = 776 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + +I D+ + + +G V V FGAFV +DGLVHIS LS V VVK G Sbjct: 640 EGVETIGDL-KPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALSNSFVRDPRAVVKPG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 D V VK+LD D R +I L+M++ D +P Sbjct: 699 DVVRVKVLDVDVPRKRISLTMRLDDAPQARP 729 >gi|76799531|ref|ZP_00781663.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21] gi|76585115|gb|EAO61741.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21] Length = 466 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 347 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 406 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 407 ERVSLSMKALEE 418 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 258 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 316 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 317 DEEAGRVSLSLK 328 >gi|331090664|ref|ZP_08339513.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400078|gb|EGG79729.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium 2_1_46FAA] Length = 222 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E R ++ V EV + +G V + +GAFV GLVHISQ+S +R+ DV+ Sbjct: 109 KEKARRLSAV-EVGSVLEGTVESLQTYGAFVRLENDLSGLVHISQISDKRIKSPKDVLSA 167 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690 GD V VK++ D GKI LSMK + Sbjct: 168 GDAVTVKVIGIKD-GKISLSMKAL 190 >gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3] gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3] Length = 492 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LS+K ++ TG Sbjct: 366 LDRRRISLSLKQANEATG 383 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 282 RERVSLSLKATQEDPWR 298 >gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453] gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453] Length = 405 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V ++ FGAFV G DGLVH+S+++ V K +DV+ EGD V VK+L D + Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPE 258 Query: 680 RGKIKLSMK 688 +GKI LS+K Sbjct: 259 KGKISLSIK 267 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V +++ FGAFV +GLVHISQ+S + + +V+KEG V VK+LD + Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 346 QRVSLSIK 353 >gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279] gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279] Length = 835 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 + RSI D+ EV KG V V+DFGAFV +DGLVHIS+L+ V S+VV G Sbjct: 749 QAARSIEDL-EVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVG 807 Query: 668 D--TVWVKLLDFDDRGKIKLSM 687 D TVWV +D R KI L+M Sbjct: 808 DTVTVWVTGVD-RTRKKISLTM 828 >gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614] gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614] Length = 490 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 215 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 273 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 274 RERVSLSLKATQED 287 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVHIS+L+ V VV+ D V VK++D Sbjct: 297 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 356 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I LS+K ++ Sbjct: 357 DLERRRISLSLKQANET 373 >gi|225420174|ref|ZP_03762477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme DSM 15981] gi|225041231|gb|EEG51477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme DSM 15981] Length = 259 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V + ++GAF+ DGL+H+SQ+ST+R+ V+KEG +V VK+L D G Sbjct: 158 VVEGTVDSLKNYGAFIKLADGVDGLLHVSQISTQRIKHPGVVLKEGQSVKVKILSVAD-G 216 Query: 682 KIKLSMKVV 690 KI LSMK + Sbjct: 217 KISLSMKAL 225 >gi|77412572|ref|ZP_00788862.1| ribosomal protein S1 [Streptococcus agalactiae CJB111] gi|77161374|gb|EAO72395.1| ribosomal protein S1 [Streptococcus agalactiae CJB111] Length = 332 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 213 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 272 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 273 ERVSLSMKALEE 284 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 124 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 182 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 183 DEEAGRVSLSLK 194 >gi|283798175|ref|ZP_06347328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp. M62/1] gi|291074158|gb|EFE11522.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp. M62/1] gi|295091663|emb|CBK77770.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10] Length = 375 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ DFGAFV D L+H+SQ+S E V K SDV+ G + K++DF+ Sbjct: 280 VGSVVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFN 339 Query: 679 --DRGKIKLSMKVVDQ 692 DR KI LS+K ++ Sbjct: 340 EADR-KISLSIKALEN 354 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +E M + + + EV + +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 181 MEKKAAMQKELFERIEVGQTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 239 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V K G+TV + D + KI LS+K + N Sbjct: 240 VFKVGETVKALIKDINGE-KIALSLKFPETN 269 >gi|297571464|ref|YP_003697238.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 489 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 ++++ G+V K++ FGAFV +GLVHIS+L+ V VVK GD V+VK++D D Sbjct: 292 ISQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGDDVFVKVIDID 351 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 352 LDRRRISLSLKQANE 366 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 202 LNTLQKGQVRDGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTPVTVE 260 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L+ D DR ++ LS+K ++ Sbjct: 261 VLEVDMDRERVSLSLKATQED 281 >gi|257438775|ref|ZP_05614530.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165] gi|257198779|gb|EEU97063.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165] Length = 108 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G+V V FGAFV + G+VHIS++S E V + V+ +GD V V++++ Sbjct: 4 EVGNVLEGRVTGVKPFGAFVALPEGKSGMVHISEVSNEYVQDINTVLHDGDAVKVQVINI 63 Query: 678 DDRGKIKLSMK 688 GKI LS+K Sbjct: 64 APDGKIALSIK 74 >gi|242082121|ref|XP_002445829.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor] gi|241942179|gb|EES15324.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor] Length = 1071 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 8/86 (9%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-CGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PE+N++ +G++ +V D G FV GA R+GLVH+SQ+ R A V G V+VK Sbjct: 117 PELNQVRRGRITRVGDAGCFVRLGAGARGREGLVHVSQMPGGRRA----TVTRGQEVFVK 172 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ D K+ LSM+ VDQ+TG+ ++ Sbjct: 173 VVSVDG-AKLGLSMRDVDQDTGRDLL 197 >gi|329118647|ref|ZP_08247351.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465382|gb|EGF11663.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200] Length = 789 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS V ++VK GD V VK+L+ Sbjct: 665 QIGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDRFVQDPREIVKAGDVVKVKVLEV 724 Query: 678 D-DRGKIKLSMKVVD 691 D +R +I L+M++ D Sbjct: 725 DAERKRIALTMRLSD 739 >gi|77414872|ref|ZP_00790982.1| ribosomal protein S1 [Streptococcus agalactiae 515] gi|77159073|gb|EAO70274.1| ribosomal protein S1 [Streptococcus agalactiae 515] Length = 339 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 220 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 279 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 280 ERVSLSMKALEE 291 Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 131 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 189 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 190 DEEAGRVSLSLK 201 >gi|307265004|ref|ZP_07546565.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919989|gb|EFN50202.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 144 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V + +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DANGRISLSIK 74 >gi|240169473|ref|ZP_04748132.1| transcriptional accessory protein Tex [Mycobacterium kansasii ATCC 12478] Length = 753 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 ++ I D+ +V + +G V V FGAFV +DGLVH+S ++ VA DVV+ G Sbjct: 628 VQKIADL-KVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVVRSGQV 686 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 V VK++D D +R +I LS+++ D +P+ Sbjct: 687 VRVKVIDVDVERRRIGLSLRLNDDPQRQPV 716 >gi|127514562|ref|YP_001095759.1| RNA-binding S1 domain-containing protein [Shewanella loihica PV-4] gi|126639857|gb|ABO25500.1| RNA binding S1 domain protein [Shewanella loihica PV-4] Length = 787 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ +V I +G V V +FGAFV +DGLVHIS L+ + V+ VVK Sbjct: 640 KEGVEEIKDL-KVEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKA 698 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 GD V VK+++ D +R +I L+M+ +D+ G+ Sbjct: 699 GDVVKVKVMEVDAERKRISLTMR-LDEKPGE 728 >gi|294651819|ref|ZP_06729113.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194] gi|292822283|gb|EFF81192.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194] Length = 784 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A+ +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|256391527|ref|YP_003113091.1| RNA binding S1 domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256357753|gb|ACU71250.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928] Length = 838 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ + I +G V V FGAFV +DGLVHIS LS V DVVK Sbjct: 648 KEGVEKIGDL-QPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALSKTFVKDPRDVVKP 706 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 707 GDVVRVKVLDVDAVRKRIALTLRLDDE 733 >gi|332763610|gb|EGJ93849.1| transcriptional accessory protein [Shigella flexneri 2930-71] gi|333013052|gb|EGK32428.1| protein yhgF [Shigella flexneri K-227] Length = 834 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella moribillum M424] gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella moribillum M424] Length = 404 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 8/86 (9%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR I+ V + +G V FGAFV +GLVHISQLS ERV DV Sbjct: 284 EVARATIK-------VGDVLEGVVRNTTAFGAFVEVMDDVEGLVHISQLSHERVDNVEDV 336 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 +K+GD V VK+LD D + ++ LS+K Sbjct: 337 LKKGDKVTVKVLDIDFENERLSLSIK 362 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + E E A+++ ++ E + +G+V ++ DFGAF++ G DGL+HIS++S RV+K Sbjct: 189 ILEEERAKKLAEVYGNINE-GDVIEGKVSRITDFGAFINL-GEVDGLLHISEISHARVSK 246 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 SDV+ GD V V ++ D + KI LS K + Sbjct: 247 VSDVLAVGDVVKVAVISVDKENEKISLSAKTL 278 >gi|237785763|ref|YP_002906468.1| putative transcriptional accessory protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758675|gb|ACR17925.1| putative transcriptional accessory protein [Corynebacterium kroppenstedtii DSM 44385] Length = 750 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I ++D+ + +G V V FGAFV +DGLVH+S +S V+ DVVK Sbjct: 595 KEGIEKVSDLTP-GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSDRFVSDPHDVVKS 653 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK++D D DR +I LS+++ D+ Sbjct: 654 GQVVRVKVMDVDTDRQRIGLSLRLNDE 680 >gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC 33806] gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266] gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC 33806] gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266] Length = 493 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV + VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|89094331|ref|ZP_01167272.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Oceanospirillum sp. MED92] gi|89081390|gb|EAR60621.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Oceanospirillum sp. MED92] Length = 714 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + +ITD+ +V +G + V +FGAFV +DGLVHISQL+ + V DVV G Sbjct: 633 VETITDL-QVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQI 691 Query: 670 VWVKLLDFDD-RGKIKLSMKVVD 691 V V++L+ D+ R +I L+M+ D Sbjct: 692 VTVRVLEVDEKRKRISLTMRTAD 714 >gi|325123755|gb|ADY83278.1| RNA binding S1 [Acinetobacter calcoaceticus PHEA-2] Length = 782 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G + V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812] gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812] Length = 398 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD + D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I KG+V ++ FGAFV G DGLVH+++LS ER VV G+ + VK+L Sbjct: 192 EEGSIVKGKVARLTSFGAFVDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEIEVKVLSI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 >gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725] gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726] gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725] gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726] Length = 487 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|220930900|ref|YP_002507808.1| RNA binding S1 domain protein [Halothermothrix orenii H 168] gi|219992210|gb|ACL68813.1| RNA binding S1 domain protein [Halothermothrix orenii H 168] Length = 124 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 45/75 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +G+V + FGAFV G GL+HIS+++ V + +K+ DTV VK+++ Sbjct: 4 DVGSTVEGKVTGITKFGAFVELPGGDTGLIHISEIANTYVKDVGNYLKKNDTVKVKVINI 63 Query: 678 DDRGKIKLSMKVVDQ 692 D GKI LS+K +D Sbjct: 64 DKDGKIGLSIKRLDN 78 >gi|150017403|ref|YP_001309657.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium beijerinckii NCIMB 8052] gi|149903868|gb|ABR34701.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium beijerinckii NCIMB 8052] Length = 635 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + KG+V + DFGAFV G DGL+H+SQ+S + K SDV+KEG + VK++ D Sbjct: 481 VIKGEVKRFTDFGAFVEVNGI-DGLLHLSQISWNHIKKVSDVLKEGQIIDVKIIGLDKEA 539 Query: 682 KIKLSMKV 689 K KLS+ + Sbjct: 540 K-KLSLSI 546 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+VV++ DFGAFV DGLVHIS++S R+ S+V+K G+ + K+L D+ K I Sbjct: 569 GKVVRLNDFGAFVELEPGVDGLVHISKISHNRIEHPSEVLKIGEEIKAKILSVDEENKRI 628 Query: 684 KLSMKVV 690 LS+K V Sbjct: 629 SLSIKDV 635 >gi|333012576|gb|EGK31957.1| protein yhgF [Shigella flexneri K-304] Length = 834 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|332749494|gb|EGJ79911.1| protein yhgF [Shigella flexneri K-671] Length = 833 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|291557518|emb|CBL34635.1| Transcriptional accessory protein [Eubacterium siraeum V10Sc8a] Length = 713 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV ++N I G V V+DFG FV +DGLVHISQ+ + + +VVK GD Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690 Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690 V VK+LD D + +I L+MK V Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713 >gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC 51867] gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC 51866] gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC 51867] gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC 51866] Length = 482 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G + VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037] gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037] Length = 484 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N ++KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 205 LNNLHKGQVRKGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L+ D DR ++ LS+K ++ Sbjct: 264 ILEVDLDRERVSLSLKATQED 284 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS + V VV G+ V+VK++D D Sbjct: 295 IGQIAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKIIDID 354 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 355 LERRRISLSLKQANES 370 >gi|296123806|ref|YP_003631584.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776] gi|296016146|gb|ADG69385.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776] Length = 557 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V K G+V ++ DFGAF+ +G++HIS+L +RV + +DV+KEG V ++L+ Sbjct: 433 VGKTVTGKVTRITDFGAFIELEPGVEGMIHISELDYKRVKRVADVLKEGQQVDAQVLEIQ 492 Query: 679 -DRGKIKLSMKVV 690 +R +I LS+K + Sbjct: 493 PERQRISLSVKAL 505 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E S D EV + + G + + D+GAFV G DG +H+ ++S R+ +D V+E Sbjct: 336 KEAAASFWDKVEVGQKFTGTIKTIKDYGAFVDLGGV-DGFLHVGEMSWTRIKHPTDCVRE 394 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 TV V +L D ++ KI L M+ + QN Sbjct: 395 QQTVDVVVLSLDREKQKIGLGMRQLVQN 422 >gi|167749865|ref|ZP_02421992.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702] gi|167657177|gb|EDS01307.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702] Length = 713 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV ++N I G V V+DFG FV +DGLVHISQ+ + + +VVK GD Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690 Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690 V VK+LD D + +I L+MK V Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713 >gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 776 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D +R Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNRFVEDPHTVVKAGDIVKVKVLEVDLNR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|239907284|ref|YP_002954025.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1] gi|239797150|dbj|BAH76139.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1] Length = 492 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL+ +A + S+ D V +G+VV++ DFGAFV +GL+H+S++S RV Sbjct: 271 SLSIKQAGADPWDSVGDQFNVGDKVEGKVVRLADFGAFVEIAPGIEGLIHVSEMSHVRRV 330 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 AK DVV GD V V + D D + +I LS+K Sbjct: 331 AKPGDVVAAGDAVTVSIKDIDLSKRRIGLSLK 362 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGK 682 + +++ FGAF +GL+H+S+LS R K D V G+ V VK+L FD R + Sbjct: 210 ISRLVAFGAFAEVAPGLEGLIHLSELSWSRAEKAEDAVTPGEAVTVKVLAFDRDKKGRPR 269 Query: 683 IKLSMK 688 I LS+K Sbjct: 270 ISLSIK 275 >gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R] gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R] Length = 486 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|77406676|ref|ZP_00783718.1| ribosomal protein S1 [Streptococcus agalactiae H36B] gi|77174717|gb|EAO77544.1| ribosomal protein S1 [Streptococcus agalactiae H36B] Length = 358 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 237 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 296 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 297 ERVSLSMKALEE 308 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 148 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 206 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 207 DEEAGRVSLSLK 218 >gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109] gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109] Length = 486 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V +V G+ V VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|291538052|emb|CBL11163.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4] Length = 303 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAF++ GLVHISQ+ R+ K S+V+KEG V VK+++ +D Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNTNDN- 255 Query: 682 KIKLSMKVVDQ 692 KI LSMK + + Sbjct: 256 KISLSMKALQE 266 >gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385] gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385] Length = 488 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS] gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS] gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS] gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS] gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS] gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS] Length = 479 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+LS V VV+ GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium petroleiphilum PM1] gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium petroleiphilum PM1] Length = 793 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVH+SQL+ + V ++VK GD V VK+L+ D RG+ Sbjct: 670 EGTVSNVAQFGAFVDLGVHQDGLVHVSQLANKFVNDAREIVKTGDIVKVKVLEVDLARGR 729 Query: 683 IKLSMKV 689 I L+MK+ Sbjct: 730 ISLTMKL 736 >gi|317470286|ref|ZP_07929680.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp. 3_2_56FAA] gi|316902259|gb|EFV24179.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp. 3_2_56FAA] Length = 633 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V ++ DFGAFV D L+H+SQ++ E + K SDV+ G + K++DF Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610 Query: 678 -DDRGKIKLSMKVV 690 D KI LSMK + Sbjct: 611 KKDEKKISLSMKAL 624 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V V DFGAF+ GA DGL+HIS++S RV V GD V V + D KI Sbjct: 475 GVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGE-KIA 532 Query: 685 LSMKVVDQN 693 LS+K ++N Sbjct: 533 LSLKFPEEN 541 >gi|293610676|ref|ZP_06692976.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827020|gb|EFF85385.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 794 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A +DD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G + V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724 >gi|218708217|ref|YP_002415838.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32] gi|218321236|emb|CAV17186.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32] Length = 776 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK GD Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724 >gi|148976495|ref|ZP_01813191.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3] gi|145964071|gb|EDK29328.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3] Length = 776 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + S++D+ E + +G V V +FGAFV +DGLVHIS L+ V+ +VVK GD Sbjct: 642 VNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724 >gi|86146555|ref|ZP_01064877.1| hypothetical protein MED222_18163 [Vibrio sp. MED222] gi|85835612|gb|EAQ53748.1| hypothetical protein MED222_18163 [Vibrio sp. MED222] Length = 776 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK GD Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724 >gi|332530544|ref|ZP_08406482.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624] gi|332039990|gb|EGI76378.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624] Length = 796 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+SQLS + V +VVK GD V VK+L+ D R Sbjct: 677 VLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVKVLEVDLAR 736 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+MK +D +P Sbjct: 737 QRISLTMK-LDAAVARP 752 >gi|325660733|ref|ZP_08149361.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472807|gb|EGC76017.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium 4_1_37FAA] Length = 222 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E A E + + ++P V + G V + +GAF+ GLVH+SQ+ +R+ +DV Sbjct: 106 EQAAERAKKVQEIP-VGSVLSGTVDSLQSYGAFILLENGLSGLVHVSQICEKRIKSPADV 164 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688 +K G+ V VK++ D GKI LSMK Sbjct: 165 LKTGEEVQVKVIGIKD-GKISLSMK 188 >gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141] gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC 33035] gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141] gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC 33035] Length = 486 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|164687095|ref|ZP_02211123.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM 16795] gi|164603980|gb|EDQ97445.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM 16795] Length = 724 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV ++ I +G V+K V+DFGAFV DGLVH SQ+S + V ++V GD Sbjct: 643 TDVLKIEDIKEGMVLKGTVRNVVDFGAFVDIGIKNDGLVHKSQMSNKFVKDPMEIVSVGD 702 Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689 + VK++ D D+G++ LSMK+ Sbjct: 703 VIDVKVIGIDLDKGRVSLSMKL 724 >gi|291531019|emb|CBK96604.1| Transcriptional accessory protein [Eubacterium siraeum 70/3] Length = 713 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV ++N I G V V+DFG FV +DGLVHISQ+ + + +VVK GD Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690 Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690 V VK+LD D + +I L+MK V Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713 >gi|317153562|ref|YP_004121610.1| RNA-binding S1 domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943813|gb|ADU62864.1| RNA binding S1 domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 479 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 11/113 (9%) Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 +EQT D G +KI SL+ E A++ +I G+VV++ DFGAFV Sbjct: 251 IEQT------DKPGRLKI---SLSMKELAQDPWDTIASTFAEGDKVTGKVVRLADFGAFV 301 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688 DGLVH+S++S T+RV K +D V EG V VK+ D + +I LSMK Sbjct: 302 EIAPGVDGLVHVSEMSYTKRVNKPADFVSEGQQVAVKIKSIDPQTRRIGLSMK 354 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-----DFD 678 +G V ++ FGAFV DGLVH+SQ+S R+ + V G + K++ D Sbjct: 198 EGTVTRLAPFGAFVEIMPGLDGLVHVSQISHARIGHPEEAVTVGQKIKAKIVGIEQTDKP 257 Query: 679 DRGKIKLSMKVVDQN 693 R KI LSMK + Q+ Sbjct: 258 GRLKISLSMKELAQD 272 >gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 208 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 11/171 (6%) Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 S FI I+ G E Y + R Y+ P + E R G P RR Sbjct: 4 SAFIEWGGNKIIAAVYGPHE--AYPKHVQEADRAIVRARYSMAPFSVDERKRPG-PDRRA 60 Query: 399 IGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457 I ++ A+ V+ ++P T + + E+ ++D + +A + +SLAL DAG+P+ Sbjct: 61 IELSKVISEALESVI-FVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRD 119 Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA--GTDSGITAMQMD 506 + G A G + DD ++L D++ +ED+ G D +A I +QMD Sbjct: 120 LIVGCAAGKI---DDVVVL-DLNKEEDNFGQADVPMAIMPRTKEIALLQMD 166 >gi|331654984|ref|ZP_08355983.1| protein YhgF [Escherichia coli M718] gi|331046999|gb|EGI19077.1| protein YhgF [Escherichia coli M718] Length = 773 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHSVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium arabaticum DSM 5501] gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium arabaticum DSM 5501] Length = 676 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G++ K +DFGAF+ +GL+HISQLS VA T +VV GD V K+++ + D Sbjct: 558 EVISGKITKTVDFGAFMEIESGVEGLIHISQLSHRHVANTEEVVTAGDEVEAKIINIEPD 617 Query: 680 RGKIKLSMK 688 K+ LS+K Sbjct: 618 ERKVGLSLK 626 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G+V K++DFGAFV G +GL+HIS++S R+ SDV++E VK+L Sbjct: 470 EEGEVIEGRVTKLVDFGAFVDIGGV-EGLLHISEMSWGRIDHPSDVLEEAQETEVKVLGV 528 Query: 678 D-DRGKIKLSMKVV 690 + +I L +K + Sbjct: 529 KPEEERISLGLKQI 542 >gi|115377075|ref|ZP_01464291.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1] gi|115365914|gb|EAU64933.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1] Length = 641 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 +G+VV++ FGAFV DGLVHIS LS R+A DVV+ G+T+WV + D Sbjct: 438 QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVQVGETIWVAIEKID 492 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 P+V ++ G+V ++ +G F+ F G + GL+ ++ T+R G V V +LD Sbjct: 531 PKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAILD 589 Query: 677 FDDRGKIKLSM 687 D GKI+LS+ Sbjct: 590 IDASGKIRLSI 600 >gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] Length = 243 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 26/247 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR ++ +R + Q L GS L G+T+ I T+ +E+ G+ + Sbjct: 3 RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATV----EEKVPPFQKGSGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP ATG EV+R G + R + RL RA+ V+ T+ I Sbjct: 59 WVTAEYGMLPRATGTRTQREVTR-GKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +AL DA PI + +A +++G V G+ +L Sbjct: 118 DVIQADGGTRTASITGAFVALKDACRRLLKNKQIQKDPIIEALAAVSVGKVA-GE---LL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D++ +ED +D V T G +Q + + + L+ A++G ++ Sbjct: 174 LDLAYEEDAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQ 233 Query: 536 SKVLSES 542 ++ L+ES Sbjct: 234 NQALAES 240 >gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314] Length = 485 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|310821331|ref|YP_003953689.1| ribosomal protein S1 family protein [Stigmatella aurantiaca DW4/3-1] gi|309394403|gb|ADO71862.1| Ribosomal protein S1 family protein [Stigmatella aurantiaca DW4/3-1] Length = 640 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 +G+VV++ FGAFV DGLVHIS LS R+A DVV+ G+T+WV + D Sbjct: 437 QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVQVGETIWVAIEKID 491 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 P+V ++ G+V ++ +G F+ F G + GL+ ++ T+R G V V +LD Sbjct: 530 PKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAILD 588 Query: 677 FDDRGKIKLSM 687 D GKI+LS+ Sbjct: 589 IDASGKIRLSI 599 >gi|167748874|ref|ZP_02421001.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662] gi|167651844|gb|EDR95973.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662] Length = 633 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V ++ DFGAFV D L+H+SQ++ E + K SDV+ G + K++DF Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610 Query: 678 -DDRGKIKLSMKVV 690 D KI LSMK + Sbjct: 611 KKDEKKISLSMKAL 624 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V V DFGAF+ GA DGL+HIS++S RV V GD V V + D KI Sbjct: 475 GVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGE-KIA 532 Query: 685 LSMKVVDQN 693 LS+K ++N Sbjct: 533 LSLKFPEEN 541 >gi|154496227|ref|ZP_02034923.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC 29799] gi|150274310|gb|EDN01387.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC 29799] Length = 150 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G+V + FGAFV + GLVHIS+++ V D +KEG V VK++ D Sbjct: 5 VGSILEGKVTGLTKFGAFVSLPEGKSGLVHISEIAYSYVNDVKDYLKEGQEVKVKVIGID 64 Query: 679 DRGKIKLSMK 688 + G+I LS+K Sbjct: 65 ENGRINLSIK 74 >gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4] gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4] Length = 454 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR ++ R ++ + L+ GS L GDT+ I T+ TR L G Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETR----VPRFLKGMGS 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y+ LP AT E ++ G S R + RL R++ + A ++ + Sbjct: 57 GWVHAEYSMLPRATNTRNIREAAK-GKLSGRTMEIQRLIARSLRSSIDLEALGERSITVD 115 Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGD---D 472 ++ ++DG + A++ G+ +A L+D+G PI + VA I++G++KDG+ D Sbjct: 116 CDVIQADGGTRTASITGAFVALKLAIQTLLDSGELTESPIKENVAAISVGILKDGEAVLD 175 Query: 473 FIILSDISGDED------HLGH-MDFKVAGTDSGITAMQMDMKI----GGISENIMVM-- 519 L D S + D LG ++ + G +S ++ Q+ + + GI+E I V Sbjct: 176 LNYLEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDD 235 Query: 520 ALQQA 524 A QQA Sbjct: 236 AFQQA 240 >gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975] Length = 486 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|297205893|ref|ZP_06923288.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16] gi|297149019|gb|EFH29317.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16] Length = 402 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G+V + FGAFV GLVH+S++S +RV K SDV+K G+TV VK+L + D Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343 Query: 680 RGKIKLSMK 688 +I LS+K Sbjct: 344 EKRISLSIK 352 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 I +G+V ++ +FGAFV G DGLVHIS++S + + K SDV+K G V VK++ DDR Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 259 HRISLSIK 266 >gi|314934139|ref|ZP_07841500.1| S1 RNA binding domain protein [Staphylococcus caprae C87] gi|313653044|gb|EFS16805.1| S1 RNA binding domain protein [Staphylococcus caprae C87] Length = 716 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ E K+ G V V+DFGAF+ +DGLVH+S+LS + V D+V GD V Sbjct: 636 SIEDLNEGMKL-NGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 672 VKLLDFD-DRGKIKLSM 687 V +LD D ++GK+ L+M Sbjct: 695 VWILDIDENKGKVSLTM 711 >gi|306820494|ref|ZP_07454127.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551408|gb|EFM39366.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 714 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V++FGAFV DGLVHISQLS + + +VV GD V VK++ D DR Sbjct: 645 ILKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPMEVVSIGDIVNVKVIGIDLDR 704 Query: 681 GKIKLSMK 688 K+ L+M+ Sbjct: 705 KKVSLTMR 712 >gi|284923399|emb|CBG36493.1| putative transcription accessory protein [Escherichia coli 042] Length = 773 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM 6068] gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068] Length = 502 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E++ SI + + +G V K+ DFGAFV G DGL+HISQ+S +R+ S+++ Sbjct: 283 AKKELMASIA----IGDMREGVVRKIQDFGAFVDMGGI-DGLIHISQMSWDRIKHPSEIL 337 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688 EG V V++ D + GKI LS++ Sbjct: 338 TEGQKVRVRIEKIDPETGKIGLSLR 362 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I KG V ++ FGAFV +GL+HIS+L+ RV +VVKEG V VK+L Sbjct: 378 VGSIVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQNVVKEGQEVEVKILTVS 437 Query: 679 -DRGKIKLSMKVVDQNTGK 696 + +I LS+K Q K Sbjct: 438 AEDQRISLSLKATLQAPAK 456 >gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540] gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540] Length = 410 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+E+ + + + +G+V ++ +FGAF+ G DGLVH+S++S + V K SDV Sbjct: 190 EAAKEIFAKL----QPGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDV 244 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ G V VK+L+ D +R +I LS+K Sbjct: 245 LEAGQEVKVKVLNVDPERERISLSIK 270 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +DV+K G V VK+L+ D + Sbjct: 289 VLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEH 348 Query: 681 GKIKLSMKVVDQ 692 ++ LSMK +++ Sbjct: 349 QRLGLSMKALEE 360 >gi|240144542|ref|ZP_04743143.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82] gi|257203431|gb|EEV01716.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82] Length = 303 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAF++ GLVHISQ+ R+ K S+V+KEG V VK+++ +D Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNTNDN- 255 Query: 682 KIKLSMKVVDQ 692 KI LSMK + + Sbjct: 256 KISLSMKALQE 266 >gi|160936761|ref|ZP_02084127.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC BAA-613] gi|158440253|gb|EDP17999.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC BAA-613] Length = 258 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V + +GAF+ DGL+HISQ+ST+R+ S V+ EG TV VK+L + G Sbjct: 157 VVEGTVDSIKPYGAFIKLDDGVDGLLHISQISTQRIKHPSAVLTEGQTVKVKILSAQE-G 215 Query: 682 KIKLSMKVVDQN 693 K+ LSMKV+ + Sbjct: 216 KLSLSMKVLAEQ 227 >gi|323189004|gb|EFZ74288.1| protein yhgF [Escherichia coli RN587/1] Length = 773 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|281180439|dbj|BAI56769.1| conserved hypothetical protein [Escherichia coli SE15] Length = 740 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|256851010|ref|ZP_05556399.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN] gi|260661222|ref|ZP_05862136.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN] gi|282932037|ref|ZP_06337495.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1] gi|256616072|gb|EEU21260.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN] gi|260548159|gb|EEX24135.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN] gi|281303804|gb|EFA95948.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1] Length = 402 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G+V + FGAFV GLVH+S++S +RV K SDV+K G+TV VK+L + D Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343 Query: 680 RGKIKLSMK 688 +I LS+K Sbjct: 344 EKRISLSIK 352 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680 I +G+V ++ +FGAFV G DGLVHIS++S + + K SDV+K G V VK++ DDR Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 259 HRISLSIK 266 >gi|293412824|ref|ZP_06655492.1| conserved hypothetical protein [Escherichia coli B354] gi|291468471|gb|EFF10964.1| conserved hypothetical protein [Escherichia coli B354] Length = 773 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|241764598|ref|ZP_04762614.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN] gi|241365961|gb|EER60587.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN] Length = 789 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ E + +G V V FGAFV +DGLVH+SQL+ + V +VVK G Sbjct: 653 EGVEDIKDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTG 711 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+++ D +R +I LSMK+ Sbjct: 712 DIVKVKVMEVDVERKRIGLSMKL 734 >gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM] gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796] gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM] gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796] Length = 403 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPND 344 Query: 680 RGKIKLSMK 688 R +I LS+K Sbjct: 345 R-RISLSIK 352 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FG+F+ G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 197 VGDVVEGKVSRLTNFGSFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRHRISLSIK 266 >gi|315634955|ref|ZP_07890236.1| YhgF like protein [Aggregatibacter segnis ATCC 33393] gi|315476217|gb|EFU66968.1| YhgF like protein [Aggregatibacter segnis ATCC 33393] Length = 771 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V VVK G Sbjct: 640 EGVEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 D V VK+L+ D R +I L+M++ + +N GK Sbjct: 699 DVVKVKVLEVDVARRRIALTMRLDESAVKNDGK 731 >gi|312968283|ref|ZP_07782493.1| protein yhgF [Escherichia coli 2362-75] gi|312287108|gb|EFR15018.1| protein yhgF [Escherichia coli 2362-75] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6] Length = 402 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G + V DFGAFV GA DGLVH+S++S RV S+V+ GD V V +L D DR Sbjct: 231 VRTGTISSVCDFGAFVDIGGA-DGLVHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDR 289 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 290 KRIALSIK 297 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I +G + ++ FGAF +GL+HIS++ ER+ +V+ EGDT+ +++ Sbjct: 312 QLGQIVEGTITQLASFGAFARIEDGIEGLIHISEMGDERIQHPKEVIAEGDTIQARIIRI 371 Query: 678 DD-RGKIKLSMKV 689 D R ++ LS+++ Sbjct: 372 DPARKRMGLSLRL 384 >gi|239624552|ref|ZP_04667583.1| RNA binding S1 domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239520938|gb|EEQ60804.1| RNA binding S1 domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 258 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V + +GAF+ DGL+HISQ+ST+R+ V+ EG TV VK+L D+ G Sbjct: 157 VVEGTVDSIKPYGAFIKLDEGVDGLLHISQISTQRIKHPGAVLTEGQTVKVKILSTDN-G 215 Query: 682 KIKLSMKVVDQNTG 695 K+ LSM+ + + T Sbjct: 216 KLSLSMRALAEQTA 229 >gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 401 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ DFG+FV G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 196 VGDVVEGRVSRLTDFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 255 NDRHRISLSIK 265 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + +FGAFV GLVH+S+++ + V K SDV+K G V VK+L+ D + Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSK 343 Query: 681 GKIKLSMKVVD 691 +I LS+K VD Sbjct: 344 RRISLSIKQVD 354 >gi|325498949|gb|EGC96808.1| transcriptional accessory protein [Escherichia fergusonii ECD227] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|310826138|ref|YP_003958495.1| RNA binding S1 domain protein [Eubacterium limosum KIST612] gi|308737872|gb|ADO35532.1| RNA binding S1 domain protein [Eubacterium limosum KIST612] Length = 716 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHISQ+S ++ +DV+ GD V VK+L D +R +I Sbjct: 651 GTVRNVIDFGAFVDIGVHQDGLVHISQISDRYISHPTDVLSVGDVVTVKVLSVDVERKRI 710 Query: 684 KLSMKV 689 LSM V Sbjct: 711 GLSMLV 716 >gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM 43247] gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247] Length = 487 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|218691684|ref|YP_002399896.1| transcriptional accessory protein [Escherichia coli ED1a] gi|218429248|emb|CAR10058.1| transcriptional accessory protein [Escherichia coli ED1a] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|223043965|ref|ZP_03614006.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|222442680|gb|EEE48784.1| conserved hypothetical protein [Staphylococcus capitis SK14] Length = 716 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ E K+ G V V+DFGAF+ +DGLVH+S+LS + V D+V GD V Sbjct: 636 SIEDLNEGMKL-NGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 672 VKLLDFD-DRGKIKLSM 687 V +LD D ++GK+ L+M Sbjct: 695 VWILDIDENKGKVSLTM 711 >gi|324111719|gb|EGC05699.1| tex protein containing protein [Escherichia fergusonii B253] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|323966220|gb|EGB61656.1| tex protein containing protein [Escherichia coli M863] gi|323974789|gb|EGB69901.1| tex protein containing protein [Escherichia coli TW10509] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|331685047|ref|ZP_08385633.1| protein YhgF [Escherichia coli H299] gi|331077418|gb|EGI48630.1| protein YhgF [Escherichia coli H299] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|284822061|gb|ADB98031.1| conserved hypothetical protein [Escherichia coli] Length = 316 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 196 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 255 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 256 KRIALTMRLDEQ 267 >gi|266619787|ref|ZP_06112722.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM 13479] gi|288868638|gb|EFD00937.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM 13479] Length = 347 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G V + ++GAF++ GL+HISQ+S +R+ V+KEG TV VK++ Sbjct: 244 EVGAVMDGTVDTLKEYGAFINLENGLSGLLHISQISNQRIKHPGAVLKEGQTVKVKIISI 303 Query: 678 DDRGKIKLSMKVVD 691 D KI LSMK ++ Sbjct: 304 KDN-KISLSMKALE 316 >gi|303277493|ref|XP_003058040.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460697|gb|EEH57991.1| predicted protein [Micromonas pusilla CCMP1545] Length = 698 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 PEV IY+G+V VMDFG FV F +GLVH+S +S+ + + V + VWVK Sbjct: 195 PEVGAIYRGRVTNVMDFGCFVELTEFERRFEGLVHVSLMSSLKQINAREQVSKDQRVWVK 254 Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695 + ++ LSM+ V+Q+TG Sbjct: 255 VTTRSS-TRMALSMRDVNQDTG 275 >gi|218550665|ref|YP_002384456.1| transcriptional accessory protein [Escherichia fergusonii ATCC 35469] gi|218358206|emb|CAQ90853.1| transcriptional accessory protein [Escherichia fergusonii ATCC 35469] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|215488688|ref|YP_002331119.1| predicted transcriptional accessory protein [Escherichia coli O127:H6 str. E2348/69] gi|215266760|emb|CAS11200.1| predicted transcriptional accessory protein [Escherichia coli O127:H6 str. E2348/69] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|170767157|ref|ZP_02901610.1| putative transcriptional accessory protein [Escherichia albertii TW07627] gi|170124595|gb|EDS93526.1| putative transcriptional accessory protein [Escherichia albertii TW07627] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|15803911|ref|NP_289947.1| hypothetical protein Z4762 [Escherichia coli O157:H7 EDL933] gi|15833503|ref|NP_312276.1| hypothetical protein ECs4249 [Escherichia coli O157:H7 str. Sakai] gi|12518037|gb|AAG58508.1|AE005563_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363723|dbj|BAB37672.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209756500|gb|ACI76562.1| hypothetical protein ECs4249 [Escherichia coli] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067] Length = 251 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 22/205 (10%) Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +++R+DGR+S +R I L GS L G+T+ I ++ T+ + G Sbjct: 2 RQMRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGE 57 Query: 370 QRNDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 R Y LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 58 GRGWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWL 117 Query: 426 VSEITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFI 474 ++ ++DG + A++ G+ +A+ +DA VP +K PV A ++G++++G + Sbjct: 118 DCDVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVL 177 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499 L+ I ED +D + T SG Sbjct: 178 DLNYI---EDSAAQVDMNIIMTGSG 199 >gi|300937295|ref|ZP_07152137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1] gi|300457644|gb|EFK21137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|114320628|ref|YP_742311.1| RNA-binding S1 domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227022|gb|ABI56821.1| RNA binding S1 domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 782 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++ D+ + +G V V +FGAFV +DGLVHIS L+ V +VVK Sbjct: 641 REGVNTLQDL-APGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAERFVRDPHEVVKA 699 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D +R +I LSM++ D+ Sbjct: 700 GDIVKVKVMEVDLERKRIGLSMRLDDE 726 >gi|91212882|ref|YP_542868.1| hypothetical protein UTI89_C3908 [Escherichia coli UTI89] gi|117625674|ref|YP_858997.1| putative transcriptional accessory protein [Escherichia coli APEC O1] gi|218560465|ref|YP_002393378.1| transcriptional accessory protein [Escherichia coli S88] gi|237703137|ref|ZP_04533618.1| yhgF [Escherichia sp. 3_2_53FAA] gi|91074456|gb|ABE09337.1| hypothetical protein YhgF [Escherichia coli UTI89] gi|115514798|gb|ABJ02873.1| putative transcriptional accessory protein [Escherichia coli APEC O1] gi|218367234|emb|CAR05008.1| transcriptional accessory protein [Escherichia coli S88] gi|226902401|gb|EEH88660.1| yhgF [Escherichia sp. 3_2_53FAA] gi|294493847|gb|ADE92603.1| protein yhgF [Escherichia coli IHE3034] gi|307628468|gb|ADN72772.1| putative transcriptional accessory protein [Escherichia coli UM146] gi|315286094|gb|EFU45532.1| S1 RNA binding domain protein [Escherichia coli MS 110-3] gi|323950064|gb|EGB45947.1| tex protein containing protein [Escherichia coli H252] gi|323954656|gb|EGB50438.1| tex protein containing protein [Escherichia coli H263] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|109900524|ref|YP_663779.1| RNA binding S1 [Pseudoalteromonas atlantica T6c] gi|109702805|gb|ABG42725.1| RNA binding S1 [Pseudoalteromonas atlantica T6c] Length = 775 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ E I +G V V +FGAFV +DGLVHIS ++ + ++ ++VK Sbjct: 637 KEGVSSLNDLKE-GMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKT 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+++ D R ++ +M++ D + KP Sbjct: 696 GDIVKVKVMEVDVARKRVSFTMRLNDDISAKP 727 >gi|331674895|ref|ZP_08375652.1| protein YhgF [Escherichia coli TA280] gi|331067804|gb|EGI39202.1| protein YhgF [Escherichia coli TA280] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|331649205|ref|ZP_08350291.1| protein YhgF [Escherichia coli M605] gi|330909440|gb|EGH37954.1| transcription accessory protein (S1 RNA-binding domain) [Escherichia coli AA86] gi|331041703|gb|EGI13847.1| protein YhgF [Escherichia coli M605] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|262281983|ref|ZP_06059752.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA] gi|262262437|gb|EEY81134.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA] Length = 75 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70 +AGR L +ETG++A+Q++G+ + YGE+ VL + + G DFFPL VNY+ + Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEGKNVCG 68 Query: 71 GKIP 74 +IP Sbjct: 69 WEIP 72 >gi|218697090|ref|YP_002404757.1| transcriptional accessory protein [Escherichia coli 55989] gi|218353822|emb|CAV00175.1| transcriptional accessory protein [Escherichia coli 55989] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|209756502|gb|ACI76563.1| hypothetical protein ECs4249 [Escherichia coli] gi|209756506|gb|ACI76565.1| hypothetical protein ECs4249 [Escherichia coli] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|218706998|ref|YP_002414517.1| transcriptional accessory protein [Escherichia coli UMN026] gi|293406985|ref|ZP_06650909.1| yhgF [Escherichia coli FVEC1412] gi|298382727|ref|ZP_06992322.1| yhgF [Escherichia coli FVEC1302] gi|300898905|ref|ZP_07117205.1| S1 RNA binding domain protein [Escherichia coli MS 198-1] gi|218434095|emb|CAR15012.1| transcriptional accessory protein [Escherichia coli UMN026] gi|291425796|gb|EFE98830.1| yhgF [Escherichia coli FVEC1412] gi|298276563|gb|EFI18081.1| yhgF [Escherichia coli FVEC1302] gi|300357457|gb|EFJ73327.1| S1 RNA binding domain protein [Escherichia coli MS 198-1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|297582398|ref|YP_003698178.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens MLS10] gi|297140855|gb|ADH97612.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10] Length = 140 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ +G++ + FGAFV G + GLVHIS+++ V DV+ GDTV VK+L Sbjct: 4 EIGSKVEGKITGITHFGAFVELPGKKTGLVHISEVADGYVENIKDVLTVGDTVTVKVLKI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS++ Sbjct: 64 ADDGKIALSIR 74 >gi|30065310|ref|NP_839481.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T] gi|56480331|ref|NP_709180.2| hypothetical protein SF3426 [Shigella flexneri 2a str. 301] gi|30043572|gb|AAP19292.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T] gi|56383882|gb|AAN44887.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|110643640|ref|YP_671370.1| S1 RNA-binding domain-containing protein [Escherichia coli 536] gi|191171603|ref|ZP_03033151.1| putative transcriptional accessory protein [Escherichia coli F11] gi|300987292|ref|ZP_07178100.1| S1 RNA binding domain protein [Escherichia coli MS 200-1] gi|110345232|gb|ABG71469.1| protein YhgF (S1 RNA binding domain) [Escherichia coli 536] gi|190908230|gb|EDV67821.1| putative transcriptional accessory protein [Escherichia coli F11] gi|300306160|gb|EFJ60680.1| S1 RNA binding domain protein [Escherichia coli MS 200-1] gi|324009384|gb|EGB78603.1| S1 RNA binding domain protein [Escherichia coli MS 57-2] gi|324014587|gb|EGB83806.1| S1 RNA binding domain protein [Escherichia coli MS 60-1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|172058806|ref|YP_001815266.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991327|gb|ACB62249.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15] Length = 706 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWV 672 D+ +V ++G V V+DFGAFV GLVHIS+LS +RV DV+ GD TVWV Sbjct: 629 DMIQVGMEFQGTVRNVLDFGAFVDIGVKESGLVHISKLSKKRVKHPLDVIAVGDIVTVWV 688 Query: 673 KLLDFDDRGKIKLSM 687 ++ +RG+I L+M Sbjct: 689 TSVE-PERGRIGLTM 702 >gi|331089661|ref|ZP_08338560.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405029|gb|EGG84567.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium 3_1_46FAA] Length = 367 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E V K SDV+ G + K++D + Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLN 335 Query: 679 -DRGKIKLSMKVVDQN 693 + KI LSMK ++ + Sbjct: 336 EEEKKISLSMKALEAD 351 Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G + V DFGAFV G DGL+HIS++S R+ GDT+ V + D D K+ Sbjct: 199 GVIKNVTDFGAFVDLGGV-DGLLHISEMSWGRIDNPKKNFHVGDTLTVLVKDIHDT-KVA 256 Query: 685 LSMKVVDQN 693 LS+K + N Sbjct: 257 LSLKFPETN 265 >gi|153814811|ref|ZP_01967479.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756] gi|317500330|ref|ZP_07958555.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium 8_1_57FAA] gi|145847842|gb|EDK24760.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756] gi|316898271|gb|EFV20317.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium 8_1_57FAA] Length = 367 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E V K SDV+ G + K++D + Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLN 335 Query: 679 -DRGKIKLSMKVVDQN 693 + KI LSMK ++ + Sbjct: 336 EEEKKISLSMKALEAD 351 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G + V DFGAFV G DGL+HIS++S R+ GDT+ V + D D K+ Sbjct: 199 GVIKNVTDFGAFVDLGGV-DGLLHISEMSWGRIDNPKKNFHVGDTLTVLVKDIHDT-KVA 256 Query: 685 LSMKVVDQN 693 LS+K + N Sbjct: 257 LSLKFPETN 265 >gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis] Length = 489 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|320197365|gb|EFW71980.1| putative transcriptional accessory protein [Escherichia coli WV_060327] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|331665012|ref|ZP_08365913.1| protein YhgF [Escherichia coli TA143] gi|331057522|gb|EGI29508.1| protein YhgF [Escherichia coli TA143] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63] Length = 715 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R I I D+ E ++ KG V V+DFGAFV +DGLVHISQ+ + + S+V+K Sbjct: 633 RSDILDIKDLKEGMEL-KGTVRNVIDFGAFVDIGVHQDGLVHISQICDKYIKHPSEVLKV 691 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD V VK+L D ++ +I L+M+ Sbjct: 692 GDVVNVKVLSVDPEKNRISLTMR 714 >gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus] Length = 393 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%) Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A +L E E++ S+ + + +G+V ++ +FGAFV G DGLVH+S+LS E Sbjct: 174 AVEALENAEKKDELLESLNE----GDVIEGKVARLTNFGAFVDIGGV-DGLVHVSELSHE 228 Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 V DVV GD+V VK+ D D +I LS+K Sbjct: 229 HVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIK 262 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 5/81 (6%) Query: 618 EVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 E+N+ + +G VV++ +FGAFV GLVHIS++S + +V++ G+ V VK+L Sbjct: 275 EINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKIL 334 Query: 676 DFD-DRGKIKLSMKVV--DQN 693 D + +I LS+K D+N Sbjct: 335 SVDPENERISLSIKATLPDEN 355 Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I ++ E +K+ G+V ++ + VH G + +G++ ISQLST + SD VK GD + Sbjct: 10 INEIKEGDKV-TGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIG 68 Query: 671 -WVKLLDFDDRGK 682 +V +++D+ + Sbjct: 69 AYVTKVEYDEENE 81 >gi|160892953|ref|ZP_02073742.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50] gi|156865512|gb|EDO58943.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50] Length = 716 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHISQ+S + + DVV GD V VK++ D + Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLDVVSVGDIVTVKVMGVDLAK 704 Query: 681 GKIKLSMKVVD 691 +I+L+MK ++ Sbjct: 705 KRIQLTMKGIE 715 >gi|26250008|ref|NP_756048.1| hypothetical protein c4184 [Escherichia coli CFT073] gi|227883541|ref|ZP_04001346.1| transcription accessory protein [Escherichia coli 83972] gi|300985365|ref|ZP_07177421.1| S1 RNA binding domain protein [Escherichia coli MS 45-1] gi|301050382|ref|ZP_07197270.1| S1 RNA binding domain protein [Escherichia coli MS 185-1] gi|26110437|gb|AAN82622.1|AE016768_40 Protein yhgF [Escherichia coli CFT073] gi|227839420|gb|EEJ49886.1| transcription accessory protein [Escherichia coli 83972] gi|300297908|gb|EFJ54293.1| S1 RNA binding domain protein [Escherichia coli MS 185-1] gi|300408106|gb|EFJ91644.1| S1 RNA binding domain protein [Escherichia coli MS 45-1] gi|307555493|gb|ADN48268.1| putative transcriptional accessory protein [Escherichia coli ABU 83972] gi|315291752|gb|EFU51108.1| S1 RNA binding domain protein [Escherichia coli MS 153-1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|327251042|gb|EGE62735.1| protein yhgF [Escherichia coli STEC_7v] Length = 780 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|313906129|ref|ZP_07839478.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6] gi|313469016|gb|EFR64369.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6] Length = 235 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 A E ++ + E+ + G+V + +GAF+ GLVHISQ+S +RV DV+K Sbjct: 112 ADEEKKAKIEAIEIGSVMDGKVESIQSYGAFIDLGDGLSGLVHISQISNKRVKSVEDVLK 171 Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 G V VK++ D GK+ LSMK +++ Sbjct: 172 AGQDVKVKVIRIKD-GKLSLSMKALEE 197 >gi|300933407|ref|ZP_07148663.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100] Length = 488 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306] gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306] Length = 489 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|209756498|gb|ACI76561.1| hypothetical protein ECs4249 [Escherichia coli] gi|209756504|gb|ACI76564.1| hypothetical protein ECs4249 [Escherichia coli] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|222035109|emb|CAP77854.1| Protein yhgF [Escherichia coli LF82] gi|312947955|gb|ADR28782.1| transcriptional accessory protein [Escherichia coli O83:H1 str. NRG 857C] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|170683595|ref|YP_001745655.1| putative transcriptional accessory protein [Escherichia coli SMS-3-5] gi|170521313|gb|ACB19491.1| putative transcriptional accessory protein [Escherichia coli SMS-3-5] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|313647297|gb|EFS11749.1| protein yhgF [Shigella flexneri 2a str. 2457T] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|301019573|ref|ZP_07183735.1| S1 RNA binding domain protein [Escherichia coli MS 69-1] gi|300399198|gb|EFJ82736.1| S1 RNA binding domain protein [Escherichia coli MS 69-1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|282882561|ref|ZP_06291182.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B] gi|300814633|ref|ZP_07094884.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297703|gb|EFA90178.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B] gi|300511252|gb|EFK38501.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 130 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 43/70 (61%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V + FGAFV+ GLVHIS++S V SDV++ G V VK+L D Sbjct: 5 VGDVVEGVVSNLTKFGAFVNLDSGLTGLVHISEISDTFVKDVSDVLETGQNVKVKVLSID 64 Query: 679 DRGKIKLSMK 688 D+GKI LS+K Sbjct: 65 DKGKIALSIK 74 >gi|262280371|ref|ZP_06058155.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258149|gb|EEY76883.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 794 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A +DD + LAE+E R Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G + V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 636 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724 >gi|260857514|ref|YP_003231405.1| putative transcriptional accessory protein [Escherichia coli O26:H11 str. 11368] gi|260870133|ref|YP_003236535.1| putative transcriptional accessory protein [Escherichia coli O111:H- str. 11128] gi|257756163|dbj|BAI27665.1| predicted transcriptional accessory protein [Escherichia coli O26:H11 str. 11368] gi|257766489|dbj|BAI37984.1| predicted transcriptional accessory protein [Escherichia coli O111:H- str. 11128] gi|323154240|gb|EFZ40443.1| protein yhgF [Escherichia coli EPECa14] gi|323179068|gb|EFZ64642.1| protein yhgF [Escherichia coli 1180] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|296140136|ref|YP_003647379.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162] gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162] Length = 499 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 215 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 273 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 274 RERVSLSLKATQED 287 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 298 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 357 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 358 LERRRISLSLKQANED 373 >gi|197303158|ref|ZP_03168201.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC 29176] gi|197297761|gb|EDY32318.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 6/86 (6%) Query: 606 ARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 ARE +I SI +V + KG V + ++GAFV GLVH+SQ+S +RV SDV+ Sbjct: 117 AREALIASI----QVGSVLKGTVETLQNYGAFVKLENGLSGLVHVSQISQKRVKLPSDVL 172 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690 + G V VK++ D GKI LSMK + Sbjct: 173 EVGQEVEVKVIGIKD-GKISLSMKAL 197 >gi|188589637|ref|YP_001919919.1| protein tex [Clostridium botulinum E3 str. Alaska E43] gi|188499918|gb|ACD53054.1| protein tex [Clostridium botulinum E3 str. Alaska E43] Length = 725 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + G V V DFGAFV +DGLVH SQ++ V D+VK GD V V +L+ D R Sbjct: 650 VLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709 Query: 681 GKIKLSMKVVDQ 692 +I LSMK VD+ Sbjct: 710 KRISLSMKDVDE 721 >gi|187933135|ref|YP_001884732.1| protein tex [Clostridium botulinum B str. Eklund 17B] gi|187721288|gb|ACD22509.1| tex domain protein [Clostridium botulinum B str. Eklund 17B] Length = 723 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G V V DFGAFV +DGLVH SQ++ V D+VK GD V V +L+ D R Sbjct: 650 ILNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709 Query: 681 GKIKLSMKVVD 691 +I LSMK VD Sbjct: 710 KRISLSMKDVD 720 >gi|188495896|ref|ZP_03003166.1| putative transcriptional accessory protein [Escherichia coli 53638] gi|188491095|gb|EDU66198.1| putative transcriptional accessory protein [Escherichia coli 53638] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|300822796|ref|ZP_07102932.1| S1 RNA binding domain protein [Escherichia coli MS 119-7] gi|331670229|ref|ZP_08371068.1| protein YhgF [Escherichia coli TA271] gi|331679471|ref|ZP_08380141.1| protein YhgF [Escherichia coli H591] gi|300524562|gb|EFK45631.1| S1 RNA binding domain protein [Escherichia coli MS 119-7] gi|331062291|gb|EGI34211.1| protein YhgF [Escherichia coli TA271] gi|331072643|gb|EGI43968.1| protein YhgF [Escherichia coli H591] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291] gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291] Length = 489 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVQEGIEGLVHISELAQRHVEVPDQVVGVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|168759432|ref|ZP_02784439.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4501] gi|168785212|ref|ZP_02810219.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC869] gi|217325495|ref|ZP_03441579.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. TW14588] gi|261224688|ref|ZP_05938969.1| transcriptional accessory protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254417|ref|ZP_05946950.1| transcriptional accessory protein [Escherichia coli O157:H7 str. FRIK966] gi|189369948|gb|EDU88364.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4501] gi|189374245|gb|EDU92661.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC869] gi|217321716|gb|EEC30140.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. TW14588] gi|320191582|gb|EFW66232.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC1212] gi|326337630|gb|EGD61465.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. 1044] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei VT8] gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8] Length = 774 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS V +VVK GD V VK+++ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVKVKVMEVDIPR 712 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ DQ Sbjct: 713 KRIGLSMRMDDQ 724 >gi|332996405|gb|EGK16032.1| protein yhgF [Shigella flexneri VA-6] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|332750344|gb|EGJ80755.1| protein yhgF [Shigella flexneri 4343-70] gi|332751213|gb|EGJ81616.1| protein yhgF [Shigella flexneri 2747-71] gi|332996645|gb|EGK16270.1| protein yhgF [Shigella flexneri K-272] gi|332997185|gb|EGK16801.1| protein yhgF [Shigella flexneri K-218] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|323164969|gb|EFZ50760.1| protein yhgF [Shigella sonnei 53G] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|320175774|gb|EFW50860.1| putative transcriptional accessory protein [Shigella dysenteriae CDC 74-1112] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|281602757|gb|ADA75741.1| putative Transcriptional accessory protein [Shigella flexneri 2002017] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|251779114|ref|ZP_04822034.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083429|gb|EES49319.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 725 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + G V V DFGAFV +DGLVH SQ++ V D+VK GD V V +L+ D R Sbjct: 650 VLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709 Query: 681 GKIKLSMKVVDQ 692 +I LSMK VD+ Sbjct: 710 KRISLSMKDVDE 721 >gi|168747115|ref|ZP_02772137.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4113] gi|168753160|ref|ZP_02778167.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4401] gi|168765755|ref|ZP_02790762.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4486] gi|168772701|ref|ZP_02797708.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4196] gi|168779491|ref|ZP_02804498.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4076] gi|168797178|ref|ZP_02822185.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC508] gi|195934896|ref|ZP_03080278.1| S1 RNA-binding domain-containing protein [Escherichia coli O157:H7 str. EC4024] gi|208807890|ref|ZP_03250227.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4206] gi|208814038|ref|ZP_03255367.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4045] gi|208820215|ref|ZP_03260535.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4042] gi|209398543|ref|YP_002272842.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4115] gi|254795322|ref|YP_003080159.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. TW14359] gi|187771459|gb|EDU35303.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4196] gi|188018336|gb|EDU56458.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4113] gi|189002506|gb|EDU71492.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4076] gi|189359374|gb|EDU77793.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4401] gi|189364528|gb|EDU82947.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4486] gi|189380095|gb|EDU98511.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC508] gi|208727691|gb|EDZ77292.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4206] gi|208735315|gb|EDZ84002.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4045] gi|208740338|gb|EDZ88020.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4042] gi|209159943|gb|ACI37376.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. EC4115] gi|254594722|gb|ACT74083.1| predicted transcriptional accessory protein [Escherichia coli O157:H7 str. TW14359] gi|326344619|gb|EGD68368.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. 1125] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|74313910|ref|YP_312329.1| hypothetical protein SSON_3538 [Shigella sonnei Ss046] gi|73857387|gb|AAZ90094.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] Length = 691 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I D + ++ KG+V K+ +FG F+ +GL+HIS+L+ +V +VVK GD + V Sbjct: 567 IPDKYQPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEV 626 Query: 673 KLLDFD-DRGKIKLSMKVVD 691 K+L D D KI LS+K VD Sbjct: 627 KVLRVDTDERKIGLSLKRVD 646 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 DD I S + IE RE R+ + EV +I KG V + DFGAFV G DGL+ Sbjct: 282 DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDLGGI-DGLL 340 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 HI+ ++ ER+ ++++ + VK+L D ++ KI L +K D+N + I Sbjct: 341 HITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENI 392 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V ++ G+VV VM +GAFV +GLVHIS++S T+RV S++V GD + V +L Sbjct: 398 VESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGV 457 Query: 678 DDRG-KIKLSMKVVDQN 693 D G ++ L MK +N Sbjct: 458 DPEGQQLSLGMKQTLKN 474 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE K KG+V + ++GAF+ DGL+H+S +S T ++A S+V+++G + ++L Sbjct: 484 PE-GKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRIL 542 Query: 676 DFDD-RGKIKLSMKVVDQN 693 D+ R +I L +K +D + Sbjct: 543 SVDEQRRRIALGLKQLDND 561 >gi|306816255|ref|ZP_07450393.1| putative transcriptional accessory protein [Escherichia coli NC101] gi|331659696|ref|ZP_08360634.1| protein YhgF [Escherichia coli TA206] gi|305850651|gb|EFM51108.1| putative transcriptional accessory protein [Escherichia coli NC101] gi|315295933|gb|EFU55242.1| S1 RNA binding domain protein [Escherichia coli MS 16-3] gi|331052911|gb|EGI24944.1| protein YhgF [Escherichia coli TA206] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|299768512|ref|YP_003730538.1| transcriptional accessory protein [Acinetobacter sp. DR1] gi|298698600|gb|ADI89165.1| transcriptional accessory protein [Acinetobacter sp. DR1] Length = 782 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G + V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|262202743|ref|YP_003273951.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM 43247] gi|262086090|gb|ACY22058.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM 43247] Length = 815 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +GQV V FGAFV +DGLVH+S ++ V+ +VVK GD V VK+++ D +R Sbjct: 649 ILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDPREVVKSGDIVTVKVMEVDVER 708 Query: 681 GKIKLSMKVVDQNTGKP 697 +I LS++ +D G P Sbjct: 709 KRIGLSLR-LDDEPGAP 724 >gi|251793287|ref|YP_003008015.1| protein YhgF [Aggregatibacter aphrophilus NJ8700] gi|247534682|gb|ACS97928.1| protein YhgF [Aggregatibacter aphrophilus NJ8700] Length = 771 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V VVK G Sbjct: 640 EGVEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 D V VK+L+ D R +I L+M++ + +N GK Sbjct: 699 DVVKVKVLEVDVARRRIALTMRLDESAVKNDGK 731 >gi|110807239|ref|YP_690759.1| hypothetical protein SFV_3412 [Shigella flexneri 5 str. 8401] gi|110616787|gb|ABF05454.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|82778776|ref|YP_405125.1| hypothetical protein SDY_3669 [Shigella dysenteriae Sd197] gi|81242924|gb|ABB63634.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|157162884|ref|YP_001460202.1| protein yhgF [Escherichia coli HS] gi|187730372|ref|YP_001882084.1| putative transcriptional accessory protein [Shigella boydii CDC 3083-94] gi|191167913|ref|ZP_03029717.1| putative transcriptional accessory protein [Escherichia coli B7A] gi|209920863|ref|YP_002294947.1| hypothetical protein ECSE_3672 [Escherichia coli SE11] gi|218555956|ref|YP_002388869.1| transcriptional accessory protein [Escherichia coli IAI1] gi|256025865|ref|ZP_05439730.1| transcriptional accessory protein [Escherichia sp. 4_1_40B] gi|293453713|ref|ZP_06664132.1| transcriptional accessory protein [Escherichia coli B088] gi|300815397|ref|ZP_07095622.1| S1 RNA binding domain protein [Escherichia coli MS 107-1] gi|300907450|ref|ZP_07125096.1| S1 RNA binding domain protein [Escherichia coli MS 84-1] gi|300919306|ref|ZP_07135820.1| S1 RNA binding domain protein [Escherichia coli MS 115-1] gi|300926903|ref|ZP_07142669.1| S1 RNA binding domain protein [Escherichia coli MS 182-1] gi|300946850|ref|ZP_07161091.1| S1 RNA binding domain protein [Escherichia coli MS 116-1] gi|300956736|ref|ZP_07169006.1| S1 RNA binding domain protein [Escherichia coli MS 175-1] gi|301023059|ref|ZP_07186867.1| S1 RNA binding domain protein [Escherichia coli MS 196-1] gi|301302285|ref|ZP_07208417.1| S1 RNA binding domain protein [Escherichia coli MS 124-1] gi|301329714|ref|ZP_07222461.1| S1 RNA binding domain protein [Escherichia coli MS 78-1] gi|301645847|ref|ZP_07245761.1| S1 RNA binding domain protein [Escherichia coli MS 146-1] gi|307140093|ref|ZP_07499449.1| putative transcriptional accessory protein [Escherichia coli H736] gi|307311929|ref|ZP_07591567.1| Tex-like protein [Escherichia coli W] gi|309794677|ref|ZP_07689099.1| S1 RNA binding domain protein [Escherichia coli MS 145-7] gi|312972329|ref|ZP_07786503.1| protein yhgF [Escherichia coli 1827-70] gi|331644107|ref|ZP_08345236.1| protein YhgF [Escherichia coli H736] gi|157068564|gb|ABV07819.1| protein yhgF [Escherichia coli HS] gi|187427364|gb|ACD06638.1| putative transcriptional accessory protein [Shigella boydii CDC 3083-94] gi|190902086|gb|EDV61831.1| putative transcriptional accessory protein [Escherichia coli B7A] gi|209914122|dbj|BAG79196.1| conserved hypothetical protein [Escherichia coli SE11] gi|218362724|emb|CAR00350.1| transcriptional accessory protein [Escherichia coli IAI1] gi|291321839|gb|EFE61270.1| transcriptional accessory protein [Escherichia coli B088] gi|299880981|gb|EFI89192.1| S1 RNA binding domain protein [Escherichia coli MS 196-1] gi|300316467|gb|EFJ66251.1| S1 RNA binding domain protein [Escherichia coli MS 175-1] gi|300400812|gb|EFJ84350.1| S1 RNA binding domain protein [Escherichia coli MS 84-1] gi|300413621|gb|EFJ96931.1| S1 RNA binding domain protein [Escherichia coli MS 115-1] gi|300417107|gb|EFK00418.1| S1 RNA binding domain protein [Escherichia coli MS 182-1] gi|300453505|gb|EFK17125.1| S1 RNA binding domain protein [Escherichia coli MS 116-1] gi|300532289|gb|EFK53351.1| S1 RNA binding domain protein [Escherichia coli MS 107-1] gi|300842448|gb|EFK70208.1| S1 RNA binding domain protein [Escherichia coli MS 124-1] gi|300844199|gb|EFK71959.1| S1 RNA binding domain protein [Escherichia coli MS 78-1] gi|301075836|gb|EFK90642.1| S1 RNA binding domain protein [Escherichia coli MS 146-1] gi|306908073|gb|EFN38573.1| Tex-like protein [Escherichia coli W] gi|308121727|gb|EFO58989.1| S1 RNA binding domain protein [Escherichia coli MS 145-7] gi|310334706|gb|EFQ00911.1| protein yhgF [Escherichia coli 1827-70] gi|315062686|gb|ADT77013.1| predicted transcriptional accessory protein [Escherichia coli W] gi|315255997|gb|EFU35965.1| S1 RNA binding domain protein [Escherichia coli MS 85-1] gi|315614675|gb|EFU95315.1| protein yhgF [Escherichia coli 3431] gi|320181897|gb|EFW56803.1| putative transcriptional accessory protein [Shigella boydii ATCC 9905] gi|320199577|gb|EFW74167.1| putative transcriptional accessory protein [Escherichia coli EC4100B] gi|323174040|gb|EFZ59668.1| protein yhgF [Escherichia coli LT-68] gi|323182867|gb|EFZ68268.1| protein yhgF [Escherichia coli 1357] gi|323376726|gb|ADX48994.1| Tex-like protein [Escherichia coli KO11] gi|323939373|gb|EGB35584.1| tex protein containing protein [Escherichia coli E482] gi|324018697|gb|EGB87916.1| S1 RNA binding domain protein [Escherichia coli MS 117-3] gi|324116398|gb|EGC10317.1| tex protein containing protein [Escherichia coli E1167] gi|331036401|gb|EGI08627.1| protein YhgF [Escherichia coli H736] gi|332085555|gb|EGI90721.1| protein yhgF [Shigella boydii 5216-82] gi|332345359|gb|AEE58693.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341] gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341] Length = 419 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + E E A+++ ++ E + +G+V ++ DFGAFV+ G DGL+HIS++S RV K Sbjct: 206 ILEEEKAKKLAEVYGNINE-GDVIEGKVSRITDFGAFVN-IGEVDGLLHISEISHARVEK 263 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 SDV+ GDTV V ++ D + KI LS K + Sbjct: 264 VSDVISVGDTVKVAVIAVDKENEKISLSAKTL 295 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 8/86 (9%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR I++ + +G V FGAFV +GLVHISQ+S +RV DV Sbjct: 301 EVARATIKA-------GDVLEGVVRNTTAFGAFVEVLPEVEGLVHISQISHDRVTNVEDV 353 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 +K+GD V VK+L+FD + ++ LS+K Sbjct: 354 LKKGDKVTVKVLEFDFESERLSLSIK 379 >gi|309785848|ref|ZP_07680479.1| protein yhgF [Shigella dysenteriae 1617] gi|308926968|gb|EFP72444.1| protein yhgF [Shigella dysenteriae 1617] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|294638114|ref|ZP_06716371.1| protein YhgF [Edwardsiella tarda ATCC 23685] gi|291088746|gb|EFE21307.1| protein YhgF [Edwardsiella tarda ATCC 23685] Length = 775 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ V I +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETLNDL-NVGMILEGCVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAG 697 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D +R +I L+M++ +Q Sbjct: 698 DIVKVKVLEVDLERKRIALTMRLDEQ 723 >gi|153941449|ref|YP_001390506.1| 30S ribosomal protein S1 [Clostridium botulinum F str. Langeland] gi|152937345|gb|ABS42843.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str. Langeland] gi|295318588|gb|ADF98965.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str. 230613] Length = 387 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNMGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LDFD D KI LS+K V ++ Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271 >gi|82545762|ref|YP_409709.1| hypothetical protein SBO_3394 [Shigella boydii Sb227] gi|81247173|gb|ABB67881.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 740 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 680 KRIALTMRLDEQ 691 >gi|89110603|ref|AP_004383.1| predicted transcriptional accessory protein [Escherichia coli str. K-12 substr. W3110] gi|90111588|ref|NP_417866.4| predicted transcriptional accessory protein [Escherichia coli str. K-12 substr. MG1655] gi|170082924|ref|YP_001732244.1| transcriptional accessory protein [Escherichia coli str. K-12 substr. DH10B] gi|238902498|ref|YP_002928294.1| putative transcriptional accessory protein [Escherichia coli BW2952] gi|253771764|ref|YP_003034595.1| RNA binding S1 domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|6176584|sp|P46837|YHGF_ECOLI RecName: Full=Protein yhgF gi|85676634|dbj|BAE77884.1| predicted transcriptional accessory protein [Escherichia coli str. K12 substr. W3110] gi|87082262|gb|AAC76432.2| predicted transcriptional accessory protein [Escherichia coli str. K-12 substr. MG1655] gi|169890759|gb|ACB04466.1| predicted transcriptional accessory protein [Escherichia coli str. K-12 substr. DH10B] gi|238863139|gb|ACR65137.1| predicted transcriptional accessory protein [Escherichia coli BW2952] gi|253322808|gb|ACT27410.1| RNA binding S1 domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447574|gb|ACX37996.1| RNA binding S1 domain protein [Escherichia coli DH1] gi|315137983|dbj|BAJ45142.1| putative transcriptional accessory protein [Escherichia coli DH1] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|193068760|ref|ZP_03049720.1| putative transcriptional accessory protein [Escherichia coli E110019] gi|192957836|gb|EDV88279.1| putative transcriptional accessory protein [Escherichia coli E110019] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|320186723|gb|EFW61446.1| putative transcriptional accessory protein [Shigella flexneri CDC 796-83] gi|332090502|gb|EGI95600.1| protein yhgF [Shigella boydii 3594-74] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|309703818|emb|CBJ03159.1| putative transcription accessory protein [Escherichia coli ETEC H10407] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|157157022|ref|YP_001464864.1| protein yhgF [Escherichia coli E24377A] gi|193061670|ref|ZP_03042767.1| putative transcriptional accessory protein [Escherichia coli E22] gi|194427009|ref|ZP_03059561.1| putative transcriptional accessory protein [Escherichia coli B171] gi|254038574|ref|ZP_04872630.1| yhgF [Escherichia sp. 1_1_43] gi|256020751|ref|ZP_05434616.1| transcriptional accessory protein [Shigella sp. D9] gi|260846191|ref|YP_003223969.1| putative transcriptional accessory protein [Escherichia coli O103:H2 str. 12009] gi|332281954|ref|ZP_08394367.1| predicted transcriptional accessory protein [Shigella sp. D9] gi|157079052|gb|ABV18760.1| protein yhgF [Escherichia coli E24377A] gi|192932460|gb|EDV85057.1| putative transcriptional accessory protein [Escherichia coli E22] gi|194414970|gb|EDX31240.1| putative transcriptional accessory protein [Escherichia coli B171] gi|226839080|gb|EEH71103.1| yhgF [Escherichia sp. 1_1_43] gi|257761338|dbj|BAI32835.1| predicted transcriptional accessory protein [Escherichia coli O103:H2 str. 12009] gi|323162792|gb|EFZ48629.1| protein yhgF [Escherichia coli E128010] gi|323934603|gb|EGB31003.1| tex protein containing protein [Escherichia coli E1520] gi|323944371|gb|EGB40446.1| tex protein containing protein [Escherichia coli H120] gi|332104306|gb|EGJ07652.1| predicted transcriptional accessory protein [Shigella sp. D9] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|254520264|ref|ZP_05132320.1| RNA-binding S1 domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226914013|gb|EEH99214.1| RNA-binding S1 domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 724 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G V V DFGAFV +DGLVH SQ++ V DVVK GD V VK+L+ D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDVVKVGDIVKVKILEVDSKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 NRISLSMK 717 >gi|237728726|ref|ZP_04559207.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909348|gb|EEH95266.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 777 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|148381469|ref|YP_001256010.1| putative general stress protein [Clostridium botulinum A str. ATCC 3502] gi|153931561|ref|YP_001385844.1| hypothetical protein CLB_3610 [Clostridium botulinum A str. ATCC 19397] gi|153934848|ref|YP_001389251.1| hypothetical protein CLC_3507 [Clostridium botulinum A str. Hall] gi|153938517|ref|YP_001392883.1| hypothetical protein CLI_3749 [Clostridium botulinum F str. Langeland] gi|168180998|ref|ZP_02615662.1| putative general stress protein [Clostridium botulinum NCTC 2916] gi|170756411|ref|YP_001783169.1| hypothetical protein CLD_0954 [Clostridium botulinum B1 str. Okra] gi|170761451|ref|YP_001788869.1| hypothetical protein CLK_2998 [Clostridium botulinum A3 str. Loch Maree] gi|226950985|ref|YP_002806076.1| putative general stress protein [Clostridium botulinum A2 str. Kyoto] gi|148290953|emb|CAL85089.1| putative RNA binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927605|gb|ABS33105.1| putative RNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152930762|gb|ABS36261.1| putative RNA-binding protein [Clostridium botulinum A str. Hall] gi|152934413|gb|ABS39911.1| putative general stress protein [Clostridium botulinum F str. Langeland] gi|169121623|gb|ACA45459.1| putative RNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169408440|gb|ACA56851.1| putative RNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182668179|gb|EDT80158.1| putative general stress protein [Clostridium botulinum NCTC 2916] gi|226843689|gb|ACO86355.1| putative general stress protein [Clostridium botulinum A2 str. Kyoto] gi|295320860|gb|ADG01238.1| putative general stress protein [Clostridium botulinum F str. 230613] gi|322807854|emb|CBZ05429.1| RNA binding protein, contains ribosomal protein S1 domain [Clostridium botulinum H04402 065] Length = 134 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G VV + +FGAFV G + GLVHIS++S V + +KE D V VK++ DD+G Sbjct: 8 ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 67 KISLSIK 73 >gi|110632678|ref|YP_672886.1| RNA binding S1 [Mesorhizobium sp. BNC1] gi|110283662|gb|ABG61721.1| RNA binding S1 [Chelativorans sp. BNC1] Length = 772 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 19/144 (13%) Query: 564 RNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIEAA----REMIRSI 613 R ++ G+ +R ++ +GA +V D+ + +AE+E R R+ Sbjct: 576 RRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTA 635 Query: 614 T------DVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 T D+ ++ + +G V V FGAFV +DGLVH+SQL+ V +VVK Sbjct: 636 TFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVK 695 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688 GD V V++L+ D R +I LSM+ Sbjct: 696 AGDVVKVRVLEVDIKRNRISLSMR 719 >gi|293416809|ref|ZP_06659446.1| transcriptional accessory protein [Escherichia coli B185] gi|291431385|gb|EFF04370.1| transcriptional accessory protein [Escherichia coli B185] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|291284743|ref|YP_003501561.1| protein yhgF [Escherichia coli O55:H7 str. CB9615] gi|290764616|gb|ADD58577.1| protein yhgF [Escherichia coli O55:H7 str. CB9615] gi|320639689|gb|EFX09283.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. G5101] gi|320645187|gb|EFX14203.1| putative transcriptional accessory protein [Escherichia coli O157:H- str. 493-89] gi|320650498|gb|EFX18964.1| putative transcriptional accessory protein [Escherichia coli O157:H- str. H 2687] gi|320655690|gb|EFX23613.1| putative transcriptional accessory protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661474|gb|EFX28889.1| putative transcriptional accessory protein [Escherichia coli O55:H7 str. USDA 5905] gi|320666497|gb|EFX33480.1| putative transcriptional accessory protein [Escherichia coli O157:H7 str. LSU-61] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940] gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940] Length = 486 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSVKQADED 366 >gi|170018357|ref|YP_001723311.1| RNA-binding S1 domain-containing protein [Escherichia coli ATCC 8739] gi|169753285|gb|ACA75984.1| RNA binding S1 domain protein [Escherichia coli ATCC 8739] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1] gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1] Length = 717 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVH+S+++ V S+VV GD TVWV +D DRGK Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGK 707 Query: 683 IKLSM 687 I LSM Sbjct: 708 ISLSM 712 >gi|310821587|ref|YP_003953945.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] gi|309394659|gb|ADO72118.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] Length = 571 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681 KG+V KV DFGAFV +GLVH+S+L ERV DVV+E V VK++D + DR Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDR- 529 Query: 682 KIKLSMKVV 690 K+ LS+K + Sbjct: 530 KVALSIKAL 538 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+VV + D+GAF+ +GLVH+S++S T+R+ S +++ G V +LD D + K Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356 Query: 683 -IKLSMKVVDQN 693 I L MK ++QN Sbjct: 357 RIALGMKQIEQN 368 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 + + KGQ+ V DFG FV DGLVH+S +S T+R+ ++ K+GD V +L+ Sbjct: 379 IGSVIKGQIRNVTDFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVMLNI 438 Query: 678 D 678 D Sbjct: 439 D 439 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E ++++ + + KG V + D+GAF+ G DGL+HI+ +S R+ S++ Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250 Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693 GD V V +L FD + ++ L +K + ++ Sbjct: 251 FNVGDEVRVVVLKFDPAQERVSLGLKQIQED 281 >gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41] gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41] gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231] gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002] gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19] Length = 487 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|116333199|ref|YP_794726.1| transcriptional accessory protein [Lactobacillus brevis ATCC 367] gi|116098546|gb|ABJ63695.1| Transcriptional accessory protein [Lactobacillus brevis ATCC 367] Length = 731 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHISQL+ V+ S VV GD TVWV +D ++R Sbjct: 661 QGTVRNVVDFGAFVDIGVKQDGLVHISQLADHYVSDPSTVVTIGDVVTVWVLSVD-ENRQ 719 Query: 682 KIKLSMK 688 +I+L+MK Sbjct: 720 RIQLTMK 726 >gi|194431285|ref|ZP_03063578.1| putative transcriptional accessory protein [Shigella dysenteriae 1012] gi|194420740|gb|EDX36816.1| putative transcriptional accessory protein [Shigella dysenteriae 1012] gi|332085781|gb|EGI90945.1| protein yhgF [Shigella dysenteriae 155-74] Length = 773 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|257465084|ref|ZP_05629455.1| predicted transcriptional accessory protein [Actinobacillus minor 202] gi|257450744|gb|EEV24787.1| predicted transcriptional accessory protein [Actinobacillus minor 202] Length = 778 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ +V I +G V V +FGAFV +DGLVHIS LS V VVK G Sbjct: 647 EGVEEIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNRFVDDPHTVVKAG 705 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691 D V VK+L+ D R +I L+M++ D Sbjct: 706 DVVKVKVLEVDVARKRIALTMRLDD 730 >gi|168183609|ref|ZP_02618273.1| putative general stress protein [Clostridium botulinum Bf] gi|187777489|ref|ZP_02993962.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC 15579] gi|237796990|ref|YP_002864542.1| hypothetical protein CLJ_B3859 [Clostridium botulinum Ba4 str. 657] gi|182673239|gb|EDT85200.1| putative general stress protein [Clostridium botulinum Bf] gi|187774417|gb|EDU38219.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC 15579] gi|229260921|gb|ACQ51954.1| putative RNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 134 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G VV + +FGAFV G + GLVHIS++S V + +KE D V VK++ DD+G Sbjct: 8 ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 67 KISLSIK 73 >gi|319440326|ref|ZP_07989482.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702] Length = 486 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ + +V G + VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|304408482|ref|ZP_07390125.1| Tex-like protein [Paenibacillus curdlanolyticus YK9] gi|304342541|gb|EFM08392.1| Tex-like protein [Paenibacillus curdlanolyticus YK9] Length = 742 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHIS+LST+ V +DVV GD V V +L+ D +G+ Sbjct: 674 QGTVRNVIDFGAFVDIGIKNDGLVHISRLSTKFVKHPTDVVSVGDAVTVWVLEADLKKGR 733 Query: 683 IKLSM 687 + L+M Sbjct: 734 VSLTM 738 >gi|291550880|emb|CBL27142.1| Ribosomal protein S1 [Ruminococcus torques L2-14] Length = 231 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + KG V + ++GAFV GLVH+SQ+S +R+ SDV+ GD V VK++ Sbjct: 125 KVGTVLKGTVETLQNYGAFVKLENGLSGLVHVSQISQKRIKMPSDVLTVGDEVEVKVIGI 184 Query: 678 DDRGKIKLSMKVV 690 D GKI LSMK + Sbjct: 185 KD-GKISLSMKAL 196 >gi|269216208|ref|ZP_06160062.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122] gi|269130467|gb|EEZ61545.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122] Length = 399 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V K++ FGAFV +GLVHIS+++ R+ + VVK G V VK+++ + Sbjct: 291 VGSVIDGKVTKIVPFGAFVELGSNVEGLVHISEMAPRRIETPAQVVKVGQEVKVKVMEVN 350 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LSMK + G Sbjct: 351 PDRRRISLSMKAAAEELG 368 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 5/77 (6%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++DFGAFV G DGLVHIS+LS V S+VVK G V V++LD D R + Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLSRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K Q T P + Sbjct: 270 ISLGLK---QTTPDPWI 283 >gi|115380643|ref|ZP_01467579.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] gi|115362348|gb|EAU61647.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1] Length = 571 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681 KG+V KV DFGAFV +GLVH+S+L ERV DVV+E V VK++D + DR Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDR- 529 Query: 682 KIKLSMKVV 690 K+ LS+K + Sbjct: 530 KVALSIKAL 538 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+VV + D+GAF+ +GLVH+S++S T+R+ S +++ G V +LD D + K Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356 Query: 683 -IKLSMKVVDQN 693 I L MK ++QN Sbjct: 357 RIALGMKQIEQN 368 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 + + KGQ+ V DFG FV DGLVH+S +S T+R+ ++ K+GD V L+ Sbjct: 379 IGSVIKGQIRNVTDFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVXLNI 438 Query: 678 D 678 D Sbjct: 439 D 439 Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E +E ++++ + + KG V + D+GAF+ G DGL+HI+ +S R+ S++ Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250 Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693 GD V V +L FD + ++ L +K + ++ Sbjct: 251 FNVGDEVRVVVLKFDPAQERVSLGLKQIQED 281 >gi|197119399|ref|YP_002139826.1| S1 RNA-binding domain-containing transcriptional accessory protein [Geobacter bemidjiensis Bem] gi|197088759|gb|ACH40030.1| S1 RNA-binding domain-containing transcriptional accessory protein [Geobacter bemidjiensis Bem] Length = 754 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + +I D+ E I +G V V FGAFV +DGLVH+SQLS +D VK Sbjct: 635 REDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKV 693 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G+ V VKLL D +R +I LS+K Sbjct: 694 GEIVKVKLLSADPERKRISLSIK 716 >gi|167039354|ref|YP_001662339.1| hypothetical protein Teth514_0696 [Thermoanaerobacter sp. X514] gi|300913994|ref|ZP_07131311.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561] gi|307725323|ref|YP_003905074.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp. X513] gi|166853594|gb|ABY92003.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514] gi|300890679|gb|EFK85824.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561] gi|307582384|gb|ADN55783.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513] Length = 140 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V+ + DFGAF+ + GLVHIS+++ V +KE D V VK+L Sbjct: 4 EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIRKHLKEHDKVKVKILSM 63 Query: 678 DDRGKIKLSMK 688 D G+I LS+K Sbjct: 64 DANGRISLSIK 74 >gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 415 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + G+V + DFGAFV GA DGLVH+S+LS RV +V+K GD V V +L Sbjct: 232 EPGAVRTGRVTSLCDFGAFVDIGGA-DGLVHLSELSWSRVKHPEEVLKVGDAVSVYILSV 290 Query: 678 D-DRGKIKLSMK 688 D D+ +I LS+K Sbjct: 291 DEDKKRIALSIK 302 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 ++TD ++ + G V ++ FGAFV +GL+HIS++S ER+ DV+ EGD+V Sbjct: 311 TVTDRYQIGQSVSGVVTQLTAFGAFVRLEDGIEGLIHISEMSDERIQHPRDVINEGDSVS 370 Query: 672 VKLLDFD-DRGKIKLSMK 688 +++ D R +I LS + Sbjct: 371 ARIIRIDPTRKRIGLSTR 388 >gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16] gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16] Length = 384 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%) Query: 601 AEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AEIE ++++ S++ + +G+V ++ FGAFV G DGLVHISQ++ ERV Sbjct: 173 AEIEEKKKQVLHSLS----TGDVVEGKVQRLTSFGAFVDVGGV-DGLVHISQIAHERVEH 227 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 SDV+ EG V VK+L D D ++ LS+K Sbjct: 228 PSDVLSEGQEVRVKVLSVDPDSERVSLSIK 257 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I G V +++ FGAFV +GLVHISQ+S + +V++EG V K+L+ D Sbjct: 276 IVTGTVKRLVSFGAFVEIAPGVEGLVHISQISKRHIGTPQEVLEEGQQVQAKVLEVSEAD 335 Query: 680 RGKIKLSMK 688 R ++ LS++ Sbjct: 336 R-RVSLSIR 343 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V KV D AFV DG+V IS+LS+ V K SDV+ D + +K+ + Sbjct: 17 VGDIVTGKVTKVEDKQAFVDVGFKVDGIVPISELSSLHVEKASDVLSVDDELELKVTKVE 76 Query: 679 DRGKIKLSMKVV 690 D ++ LS K V Sbjct: 77 D-DELILSKKAV 87 >gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA] gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA] Length = 717 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVH+S+++ V S+VV GD TVWV +D DRGK Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGK 707 Query: 683 IKLSM 687 I LSM Sbjct: 708 ISLSM 712 >gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] Length = 247 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +R + + GS L G+T+ I T+ +++ L T + Sbjct: 3 RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATI----EDKVPPFLKNTGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y+ LP +T E SR R +EI RL RA+ V+ A TL I Sbjct: 59 WITAEYSMLPSSTQSRKVRESSRGKVEGRTQEIQ--RLIGRALRSVVDLDALGERTLWID 116 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ GS +AL+DA +P+ V+ I++G++ +G+ + Sbjct: 117 CDVIQADGGTRTASITGSFVALVDALNKLKEEGAIESIPVRSFVSAISVGII-NGEAML- 174 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 D+ +ED +D + TD G Sbjct: 175 --DLCYEEDSTAKVDMNIVMTDRG 196 >gi|313113528|ref|ZP_07799117.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624255|gb|EFQ07621.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 189 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +++G+V V FGAFV R G+VHIS++S E V + V+ +GD V V++++ Sbjct: 4 EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDIAAVLHDGDIVKVQVINI 63 Query: 678 DDRGKIKLSMK 688 GKI LS+K Sbjct: 64 APDGKIALSIK 74 >gi|300176908|emb|CBK25477.2| unnamed protein product [Blastocystis hominis] Length = 1131 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 + +IY G+V +MD+GAF+ +DGL HIS ++ ER+ SDV++ V VK+ Sbjct: 197 MGEIYDGEVRSIMDYGAFIELLDVSPRQDGLCHISCIAHERIRHPSDVLRVNQRVKVKVT 256 Query: 676 DFDDRGKIKLSMKVVDQNTGK 696 KI LSMK +DQ TG+ Sbjct: 257 QIKG-TKIGLSMKDIDQQTGE 276 >gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506] gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506] Length = 237 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R R + +R +S + G+L+ GS L G+T +V TL +E+ L G R Sbjct: 1 MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATL----EERLPPWLKGQGR 56 Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT E +R G PS R RL R++ V+ + + Sbjct: 57 GWVTAEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDC 116 Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +AL D A +P+ +A ++ G+V DG+ + L Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLSWMKTRGMLATIPLRDHIAAVSCGIV-DGEPRLDL 175 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + ED H D T +G Sbjct: 176 DYV---EDSSAHTDVNFVMTGTG 195 >gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA-processing protein 41) (Exosome component 4) (p12A) [Equus caballus] Length = 245 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA+MDAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 E+ G + + I ++MD + + E+ + L+ A R + + +V Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTLLDRV 231 Query: 539 LSE 541 + + Sbjct: 232 VRQ 234 >gi|255024450|ref|ZP_05296436.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-208] Length = 154 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 45 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 104 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 105 EADKRLSLSIK 115 >gi|240950293|ref|ZP_04754568.1| transcriptional accessory protein [Actinobacillus minor NM305] gi|240295195|gb|EER46003.1| transcriptional accessory protein [Actinobacillus minor NM305] Length = 778 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D R Sbjct: 660 ILEGTVTNVANFGAFVDIGVHQDGLVHISMLSDRFVDDPHTVVKAGDVVKVKVLEVDVAR 719 Query: 681 GKIKLSMKVVDQNTGK 696 +I L+M+ +D++TG+ Sbjct: 720 KRIALTMR-LDESTGE 734 >gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270] gi|158446521|gb|EDP23516.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270] Length = 674 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 37/155 (23%) Query: 571 GKVIRGIVEQT---GAKVNIDD-DGTVKIASSSLAEIEAAREMI---------------- 610 G V+RG V + GA VN+ D DG + ++ S I+ +++ Sbjct: 472 GDVLRGTVRKLTDFGAFVNLGDVDGLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRE 531 Query: 611 --------RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + +T P V + G V+ ++DFGAFV +GLVHISQ+S Sbjct: 532 RNRISLGLKQLTKKPFELFLENNSVGDVVTGTVINLVDFGAFVKLKENVEGLVHISQISH 591 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688 + + K SDV+ G+ V VK+++ D+ KI LS+K Sbjct: 592 DHIEKASDVLNIGEEVQVKIINIDEENQKISLSIK 626 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 A +NID+ + S E + +E + V + +G V K+ DFGAFV+ G Sbjct: 435 AIINIDERKKKIVLSRREVEEKELQEKLDLAWSKLAVGDVLRGTVRKLTDFGAFVNL-GD 493 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 DGL+H+S +S R+ K SD++ GD V V +L + +R +I L +K Q T KP Sbjct: 494 VDGLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRERNRISLGLK---QLTKKP 546 >gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338] Length = 501 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 210 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 269 VLDVDMDRERVSLSLKATQED 289 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ GD V Sbjct: 292 RQFARTHAIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDV 351 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692 +K++D D +R +I LS+K ++ Sbjct: 352 MIKVIDIDLERRRISLSLKQANE 374 >gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47] Length = 598 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I D + ++ KG+V K+ +FG F+ +GL+HIS+L+ +V +VVK GD + V Sbjct: 474 IPDKYQPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEV 533 Query: 673 KLLDFD-DRGKIKLSMKVVD 691 K+L D D KI LS+K VD Sbjct: 534 KVLRVDTDERKIGLSLKRVD 553 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 DD I S + IE RE R+ + EV +I KG V + DFGAFV G DGL+ Sbjct: 189 DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDLGGI-DGLL 247 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 HI+ ++ ER+ ++++ + VK+L D ++ KI L +K D+N + I Sbjct: 248 HITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENI 299 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V ++ G+VV VM +GAFV +GLVHIS++S T+RV S++V GD + V +L Sbjct: 305 VESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGV 364 Query: 678 DDRG-KIKLSMKVVDQN 693 D G ++ L MK +N Sbjct: 365 DPEGQQLSLGMKQTLKN 381 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE K KG+V + ++GAF+ DGL+H+S +S T ++A S+V+++G + ++L Sbjct: 391 PE-GKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRIL 449 Query: 676 DFDD-RGKIKLSMKVVDQN 693 D+ R +I L +K +D + Sbjct: 450 SVDEQRRRIALGLKQLDND 468 >gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054] Length = 496 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +++++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD ++VK++D Sbjct: 296 QISQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKVIDI 355 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 356 DLERRRISLSLKQANESLG 374 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + ++VV+ G V V++LD D D Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVEVGQEVTVEVLDVDMD 272 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 273 RERVSLSLKATQED 286 >gi|163748835|ref|ZP_02156087.1| hypothetical protein KT99_02837 [Shewanella benthica KT99] gi|161331609|gb|EDQ02414.1| hypothetical protein KT99_02837 [Shewanella benthica KT99] Length = 790 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V+ +VK GD V VK+++ D +R Sbjct: 671 ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTLVKAGDVVKVKVMEIDVER 730 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ ++ KP Sbjct: 731 KRIALTMRLDEKAADKP 747 >gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101] gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101] Length = 248 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 28/254 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R GR E +R + + GS L GDT+ + ++ +E+ L G+ Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425 YN +P +T +++++ R EI RL RA+ + A T+ I Sbjct: 57 GWITAEYNMIPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + ++ GS +AL+DA PI V+ +++G+V G++ + Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSIGIV--GEEKV 172 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 + D+ +EDH+ +D V + G +Q +IG S + L A++G ++ Sbjct: 173 L--DLCYEEDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQ 230 Query: 534 EMSKVLSESRLQLG 547 L L +G Sbjct: 231 AQKNALKTDSLWIG 244 >gi|606342|gb|AAA58205.1| ORF_o622; reading frame open far upstream of start; possible frameshift, linking to previous ORF [Escherichia coli str. K-12 substr. MG1655] Length = 622 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 502 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 561 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 562 KRIALTMRLDEQ 573 >gi|157148991|ref|YP_001456310.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895] gi|157086196|gb|ABV15874.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895] Length = 776 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129] gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae] Length = 486 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++LD D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 267 RERVSLSLKATQEDPWR 283 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 291 VGQIVPGRVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|114566869|ref|YP_754023.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337804|gb|ABI68652.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 687 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G VV++ FGAFV DGLVHISQL+ RV K DVV+ + + +K+L D + Sbjct: 598 IIEGTVVRIAPFGAFVEIEAGVDGLVHISQLANHRVEKPEDVVQVNEKIKIKILSIDPEE 657 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 658 KRIGLSLK 665 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ KG++ +++D+GAF+ G +GL+H+S+++ R+ + SDV++EG+ + V +L Sbjct: 509 EEGQVRKGRIKRLVDYGAFIDL-GGYEGLLHVSEIAHTRIDQPSDVLQEGEEIDVYILAL 567 Query: 678 D-DRGKIKLSMK 688 D ++ ++ LS K Sbjct: 568 DREKERVSLSRK 579 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 4/99 (4%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V S A++EA EM T P + KG+V++V+D V G +G++ + ++ Sbjct: 313 VSANEESFAKLEA--EMADFTT--PNKGDVIKGKVIQVLDDEVMVDVGGKSEGIIPLREM 368 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691 S + + ++V+ GD + V +L +DD G I LS K VD Sbjct: 369 SLQDIDSAKELVEVGDEIEVMVLKWDDDGTILLSKKKVD 407 >gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18] gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18] Length = 484 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+T V VV G+ V+VK++D D Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDID 349 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 350 MDRRRISLSLKQANE 364 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGA 635 I +Q AK+ D + S A +E + +RS + E ++ +G V +++FGA Sbjct: 162 IGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGA 221 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 FV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K ++ Sbjct: 222 FVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279 >gi|283835802|ref|ZP_06355543.1| hypothetical protein CIT292_10196 [Citrobacter youngae ATCC 29220] gi|291067967|gb|EFE06076.1| protein YhgF [Citrobacter youngae ATCC 29220] Length = 777 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|261867409|ref|YP_003255331.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412741|gb|ACX82112.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1] Length = 771 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V + VVK GD Sbjct: 642 VEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEEPHQVVKTGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 V VK+L+ D R +I L+M++ + +N GK Sbjct: 701 VKVKVLEVDVARRRIALTMRLDESAVKNDGK 731 >gi|237807289|ref|YP_002891729.1| RNA binding S1 domain-containing protein [Tolumonas auensis DSM 9187] gi|237499550|gb|ACQ92143.1| RNA binding S1 domain protein [Tolumonas auensis DSM 9187] Length = 767 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + + D+ + + I +G V V +FGAFV +DGLVHIS ++ ++ +VVK Sbjct: 635 REGVEELKDL-KPDMILEGVVTNVTNFGAFVDIGVHQDGLVHISAITNRYISDPREVVKA 693 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+L+ D R +I L+M++ D+ Sbjct: 694 GDIVKVKVLEVDIPRKRIALTMRLDDE 720 >gi|257095432|ref|YP_003169073.1| RNA-binding S1 domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047956|gb|ACV37144.1| RNA binding S1 domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 774 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + + D+ + I +G V V +FGAFV +DGLVHIS ++ V VVK Sbjct: 650 REGVEQVKDL-QPGMILEGVVTNVANFGAFVDIGVHQDGLVHISAIADRFVKDPRAVVKA 708 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+L+ D R +I LSM++ D+ Sbjct: 709 GDVVKVKVLEVDLARQRIALSMRLADE 735 >gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296] gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296] Length = 484 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+T V VV G+ V+VK++D D Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDID 349 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 350 MDRRRISLSLKQANE 364 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGA 635 I +Q AK+ D + S A +E + +RS + E ++ +G V +++FGA Sbjct: 162 IGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGA 221 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 FV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K ++ Sbjct: 222 FVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279 >gi|73662124|ref|YP_300905.1| RNA binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494639|dbj|BAE17960.1| putative RNA binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 716 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ + K+ G V V+DFGAFV +DGLVH+S+L+ + V D+V GD V Sbjct: 636 SIEDLTKNMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLAKKFVKNPMDIVSVGDIVD 694 Query: 672 VKLLDFDD-RGKIKLSM 687 V +LD DD +GK+ L+M Sbjct: 695 VWILDIDDKKGKVSLTM 711 >gi|289550313|ref|YP_003471217.1| S1 RNA-binding domain-containing transcription accessory protein [Staphylococcus lugdunensis HKU09-01] gi|289179845|gb|ADC87090.1| S1 RNA-binding domain-containing transcription accessory protein [Staphylococcus lugdunensis HKU09-01] Length = 716 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ + K+ G V V+DFGAFV +DGLVHIS+LS + V D+V GD V Sbjct: 636 SIADLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVKNPMDIVTVGDIVD 694 Query: 672 VKLLDFDD-RGKIKLSM 687 V ++D D+ +GK+ L+M Sbjct: 695 VWIIDIDEQKGKVSLTM 711 >gi|288941833|ref|YP_003444073.1| Tex-like protein-like protein [Allochromatium vinosum DSM 180] gi|288897205|gb|ADC63041.1| Tex-like protein protein-like protein [Allochromatium vinosum DSM 180] Length = 781 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 27/150 (18%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDG---------TVKIASSSLAEIEAA------- 606 +R + GK +RG++ T +D TVK LAE+E Sbjct: 573 VRRIAEFTGKDVRGLIGDTATLRRLDPAAFTDERFGLPTVK---DILAELEKPGRDPRPE 629 Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E + ++ D+ E I +G V V +FGAFV +DGLVHIS LS V Sbjct: 630 FKTAQFKEGVETLKDL-EPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISVLSDRFVKDP 688 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 +VVK GD V VK+L+ D +R +I LS ++ Sbjct: 689 HEVVKSGDLVKVKVLEVDLERKRIALSRRL 718 >gi|153854920|ref|ZP_01996143.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814] gi|149752622|gb|EDM62553.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814] Length = 361 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D + Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQEITAKIVDLN 335 Query: 679 D-RGKIKLSMKVVDQ 692 + KI LSMK ++Q Sbjct: 336 EAEKKISLSMKALEQ 350 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAF+ G DGL+HIS++S RV V + GD V V + D D KI Sbjct: 198 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDKVEVMIKDIHDT-KI 255 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 256 ALSLKFPETN 265 >gi|300725196|ref|YP_003714524.1| protein yhgF [Xenorhabdus nematophila ATCC 19061] gi|297631741|emb|CBJ92460.1| Protein yhgF [Xenorhabdus nematophila ATCC 19061] Length = 783 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V +FGAFV +DGLVHIS LS V VVK GD V VK++D D +R + Sbjct: 654 EGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVMDVDLNRKR 713 Query: 683 IKLSMKVVDQNTGKP 697 I L+M++ +Q P Sbjct: 714 IALTMRLDEQPGEAP 728 >gi|284008801|emb|CBA75552.1| transcription accessory protein [Arsenophonus nasoniae] Length = 774 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I +G V V +FGAFV +DGLVHIS LS + + +VK GD + VK++D Sbjct: 649 KVGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFIKDPHSLVKAGDIITVKVIDI 708 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I L+M+ +D+ T Sbjct: 709 DLNRKRIALTMR-LDEKTA 726 >gi|168235097|ref|ZP_02660155.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168818684|ref|ZP_02830684.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194735081|ref|YP_002116446.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249394|ref|YP_002148427.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204928818|ref|ZP_03220017.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710583|gb|ACF89804.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213097|gb|ACH50494.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291463|gb|EDY30815.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322251|gb|EDZ07449.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205344464|gb|EDZ31228.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087919|emb|CBY97681.1| Polyribonucleotide nucleotidyltransferase Polynucleotide phosphorylase; PNPase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614122|gb|EFY11058.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618014|gb|EFY14907.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625372|gb|EFY22198.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629837|gb|EFY26610.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632274|gb|EFY29025.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636375|gb|EFY33082.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643231|gb|EFY39800.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644767|gb|EFY41303.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651208|gb|EFY47592.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654924|gb|EFY51239.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659181|gb|EFY55433.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663118|gb|EFY59322.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668604|gb|EFY64757.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674592|gb|EFY70685.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678202|gb|EFY74263.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682541|gb|EFY78562.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684254|gb|EFY80260.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192191|gb|EFZ77423.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196383|gb|EFZ81535.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201816|gb|EFZ86879.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206358|gb|EFZ91319.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211951|gb|EFZ96778.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216857|gb|EGA01580.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222256|gb|EGA06639.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228199|gb|EGA12330.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233534|gb|EGA17627.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237004|gb|EGA21071.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243781|gb|EGA27797.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245977|gb|EGA29964.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250753|gb|EGA34631.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255764|gb|EGA39514.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261378|gb|EGA44964.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267649|gb|EGA51131.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268530|gb|EGA51997.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 776 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1] gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1] Length = 488 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+LS + V VV GD V+VK++D D Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 355 LERRRISLSLKQANE 369 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 7/92 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 E +S + +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+ Sbjct: 194 EETQSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASE 252 Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 VV+ G V V++L+ D +R ++ LS+K ++ Sbjct: 253 VVEVGQEVTVEILEVDLERERVSLSLKATQED 284 >gi|54307403|ref|YP_128423.1| hypothetical protein PBPRA0182 [Photobacterium profundum SS9] gi|46911823|emb|CAG18621.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 792 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G + V +FGAFV +DGLVHIS LS + ++ +VVK GD V VK+++ D R Sbjct: 661 ILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQR 720 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 721 KRIAMSMRMSDE 732 >gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus] Length = 245 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 S + R Y+ +TGE R R+ G R+ + Sbjct: 63 ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA+MDAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509 E+ G + + I ++MD ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDSRL 205 >gi|315660226|ref|ZP_07913081.1| YhgF like protein [Staphylococcus lugdunensis M23590] gi|315494653|gb|EFU82993.1| YhgF like protein [Staphylococcus lugdunensis M23590] Length = 716 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ + K+ G V V+DFGAFV +DGLVHIS+LS + V D+V GD V Sbjct: 636 SIADLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVENPMDIVTVGDIVD 694 Query: 672 VKLLDFDD-RGKIKLSM 687 V ++D D+ +GK+ L+M Sbjct: 695 VWIIDIDEQKGKVSLTM 711 >gi|291547610|emb|CBL20718.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5] Length = 300 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%) Query: 605 AAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 +ARE++R +V + NKI +G V + +GAFV GLVHISQ+ +R Sbjct: 173 SAREILRERAEVEKRNKISNIQVGFVTEGTVESLQPYGAFVELGNGVSGLVHISQICEKR 232 Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + K S+V+ GD V VK++ D GK+ LS+K Sbjct: 233 IRKPSEVLSVGDKVKVKVIAIKD-GKLSLSIK 263 >gi|291519327|emb|CBK74548.1| Ribosomal protein S1 [Butyrivibrio fibrisolvens 16/4] Length = 374 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687 ++ DFGAFV D L+H+SQ+S ER+ K SDV+ G + K+++F DD KI LSM Sbjct: 286 RMKDFGAFVELAPGIDALLHVSQISKERIEKPSDVLSIGQDIEAKVVEFNDDEKKISLSM 345 Query: 688 KVV 690 K + Sbjct: 346 KAL 348 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + ++G V V DFGAF+ GA DGL+HIS++S RV + + GDT+ V + + Sbjct: 193 VGQEFEGTVKNVKDFGAFIDLGGA-DGLLHISEMSWGRVENPTKTLNVGDTIKVFVKEIK 251 Query: 679 DRGKIKLSMKVVDQN 693 D GKI LS K ++N Sbjct: 252 D-GKIALSCKFDNEN 265 >gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 788 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E + +G V V FGAFV +DGLVH+SQLS + V ++VK GD Sbjct: 655 VEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDI 713 Query: 670 VWVKLLDFDD-RGKIKLSMKV 689 V VK+L+ D R +I L+MK+ Sbjct: 714 VKVKVLEVDPVRKRISLTMKL 734 >gi|329122057|ref|ZP_08250665.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965] gi|327466864|gb|EGF12380.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965] Length = 171 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V ++ FGAFV + GLVHIS+++ E V ++ +K GD V VK++ Sbjct: 4 EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63 Query: 678 DDRGKIKLSMKVVDQN 693 D+ K LS+K N Sbjct: 64 DNHNKFALSIKQAQSN 79 >gi|325962327|ref|YP_004240233.1| competence protein ComEA-like protein with helix-hairpin-helix repeat region [Arthrobacter phenanthrenivorans Sphe3] gi|323468414|gb|ADX72099.1| competence protein ComEA-like protein with helix-hairpin-helix repeat region [Arthrobacter phenanthrenivorans Sphe3] Length = 805 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ + + +G V V FGAFV +DGLVH+S +S V+ +VVK G Sbjct: 652 EGIEKISDL-KPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNRFVSDPREVVKSG 710 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694 V VK+L+ D DR +I L++++ D+ T Sbjct: 711 QVVRVKVLEADPDRKRISLTLRLDDEPT 738 >gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1] gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1] Length = 234 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 20/199 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R++ + ++ GS L GDT+ I ++ +E+ L GT + Sbjct: 2 IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASV----EEKVPPFLRGTGQ 57 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y LP AT E +R G + R RL R++ + TA T+ I Sbjct: 58 GWITAEYAMLPRATAQRMVREAAR-GKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWID 116 Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKP------VAGIAMGLVKDGDDFIILSDIS 480 ++ ++DG + A++ G+ +AL A + K +A +++G+V D +L D++ Sbjct: 117 CDVIQADGGTRTASITGAFVALYRALEKMEKLEAVRSFLAAVSVGIV----DGTVLLDLN 172 Query: 481 GDEDHLGHMDFKVAGTDSG 499 +ED + +D V + G Sbjct: 173 YEEDSMAEVDMNVVMNEKG 191 >gi|295093253|emb|CBK82344.1| Transcriptional accessory protein [Coprococcus sp. ART55/1] Length = 714 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHIS++S + + DVV GD V VK++ D + Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDKFIKHPLDVVSVGDIVQVKVIGIDLAK 704 Query: 681 GKIKLSMK 688 +I+LSMK Sbjct: 705 KRIQLSMK 712 >gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN] gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923] gi|13432211|sp|P46836|RS1_MYCLE RecName: Full=30S ribosomal protein S1 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae] gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923] Length = 481 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D DR Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDR 269 Query: 681 GKIKLSMKVVDQNTGK 696 ++ LS+K ++ + Sbjct: 270 ERVSLSLKATQEDPWR 285 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|73662579|ref|YP_301360.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|84029459|sp|Q49XT0|RS1_STAS1 RecName: Full=30S ribosomal protein S1 gi|72495094|dbj|BAE18415.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 393 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%) Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 A +L E E++ S+ + + +G+V ++ +FGAFV G DGLVH+S+LS E Sbjct: 174 AVEALENAEKKDELLESLNE----GDVIEGKVARLTNFGAFVDIGGV-DGLVHVSELSHE 228 Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 V DVV G+TV VK+ D D +I LS+K Sbjct: 229 HVKSPEDVVSIGETVNVKIKSVDKDSERISLSIK 262 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G VV++ +FGAFV GLVHIS++S + S+ ++ G V VK+L D + Sbjct: 281 VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVEN 340 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 341 ERISLSIK 348 >gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3] gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3] Length = 413 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ +FGAFV G DGLVH+S++S + V K SDV+ G V VK+L D DR Sbjct: 204 VVEGKVARMTNFGAFVDLGGV-DGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDR 262 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 263 ERISLSIK 270 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V ++ FGAFV +GLVHISQ+S + +A +DV+K G V VK+L+ D +R ++ Sbjct: 292 GTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRL 351 Query: 684 KLSMKVVDQ 692 LSMK +++ Sbjct: 352 GLSMKALEE 360 >gi|291614014|ref|YP_003524171.1| hypothetical protein Slit_1548 [Sideroxydans lithotrophicus ES-1] gi|291584126|gb|ADE11784.1| Tex-like protein protein-like protein [Sideroxydans lithotrophicus ES-1] Length = 786 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + + D+ E I +G V V FGAFV +DGLVHIS L+ + V VVK Sbjct: 652 REGVEELKDL-EPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKA 710 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697 G V VK+L+ D R ++ L+M++ D Q GKP Sbjct: 711 GQIVKVKVLEVDVKRKRVSLTMRLTDAAGQAGGKP 745 >gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323] gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4] gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1] gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22] gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323] gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4] gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1] gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22] Length = 399 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I +G+V + FGAFV GLVH+S+++ + V K SDV+K G TV VK+L D D Sbjct: 285 IIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344 Query: 680 RGKIKLSMKVVDQNTGK 696 R +I LS+K D N K Sbjct: 345 R-RISLSIKQADPNAAK 360 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G+V ++ FGAFV G DGLVHIS++S + V K SDV+K G V VK++ Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|313891674|ref|ZP_07825281.1| S1 RNA binding domain protein [Dialister microaerophilus UPII 345-E] gi|313119952|gb|EFR43137.1| S1 RNA binding domain protein [Dialister microaerophilus UPII 345-E] Length = 171 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V ++ FGAFV + GLVHIS+++ E V ++ +K GD V VK++ Sbjct: 4 EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63 Query: 678 DDRGKIKLSMKVVDQN 693 D+ K LS+K N Sbjct: 64 DNHNKFALSIKQAQSN 79 >gi|271502330|ref|YP_003335356.1| Tex-like protein [Dickeya dadantii Ech586] gi|270345885|gb|ACZ78650.1| Tex-like protein [Dickeya dadantii Ech586] Length = 779 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|226953702|ref|ZP_03824166.1| RNA binding protein [Acinetobacter sp. ATCC 27244] gi|226835574|gb|EEH67957.1| RNA binding protein [Acinetobacter sp. ATCC 27244] Length = 784 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609 +I+A ++++IG I+ Q A +DD + LAE+E R Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623 Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 R+ D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E V+ Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 VVK G V V+++ D +R ++ LSM+ Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712 >gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1] Length = 788 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E + +G V V FGAFV +DGLVH+SQLS + V ++VK GD Sbjct: 655 VEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDI 713 Query: 670 VWVKLLDFDD-RGKIKLSMKV 689 V VK+L+ D R +I L+MK+ Sbjct: 714 VKVKVLEVDPVRKRISLTMKL 734 >gi|329726096|gb|EGG62568.1| Tex-like protein N-terminal domain protein [Staphylococcus epidermidis VCU144] Length = 716 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHIS+LS + V D++ GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707 Query: 684 KLSMKVVDQN 693 L+M VD N Sbjct: 708 SLTM--VDPN 715 >gi|319399555|gb|EFV87810.1| S1 RNA binding domain protein [Staphylococcus epidermidis FRI909] Length = 716 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHIS+LS + V D++ GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707 Query: 684 KLSMKVVDQN 693 L+M VD N Sbjct: 708 SLTM--VDPN 715 >gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112] gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC] gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112] gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC] gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1118] Length = 403 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 +++G+V + +FGAFV GLVH+S++S + V K SDV+K G TV VK+L+ D D Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344 Query: 680 RGKIKLSMK 688 R +I LS+K Sbjct: 345 R-RISLSIK 352 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FGAF+ G DGLVHIS++S + V K SD +K G V VK++ D Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDALKAGQDVKVKVIGID 255 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 256 NDRHRISLSIK 266 >gi|304317581|ref|YP_003852726.1| Tex-like protein protein-like protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779083|gb|ADL69642.1| Tex-like protein protein-like protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 712 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFG FV DGLVHIS++S + DVV GD V V+++D D DR +I Sbjct: 648 GTVRNVVDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVIDVDIDRNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|332995759|gb|AEF05814.1| transcriptional accessory protein [Alteromonas sp. SN2] Length = 790 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + +I D+ I +G V V +FGAFV +DGLVHIS L+ + ++ DVVK Sbjct: 637 KEGVETIKDLTP-GMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPRDVVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694 GD V VK+L+ D R +I +M++ D T Sbjct: 696 GDIVKVKVLEVDVPRKRISFTMRLEDTPT 724 >gi|242241476|ref|ZP_04795921.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144] gi|242235019|gb|EES37330.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144] Length = 716 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHIS+LS + V D++ GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707 Query: 684 KLSMKVVDQN 693 L+M VD N Sbjct: 708 SLTM--VDPN 715 >gi|169831339|ref|YP_001717321.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638183|gb|ACA59689.1| hydroxymethylbutenyl pyrophosphate reductase [Candidatus Desulforudis audaxviator MP104C] Length = 677 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +VV+++ FGAFV +GLVHIS L+ VAK DV+ EG + VK+L D Sbjct: 578 VGSVVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVD 637 Query: 679 DRGK-IKLSMKVV 690 D K I+LS++ V Sbjct: 638 DENKRIRLSLREV 650 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V ++ L E E +R+ ++ E + KG V ++ FGAFV G DGL+HIS++ Sbjct: 468 VILSRKVLLEEEYSRKRKETLETTQE-GDVVKGVVRRLTQFGAFVDI-GGLDGLLHISEI 525 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 S R+ S+V+K GD + V++L D + K+ LS+K V N + +V Sbjct: 526 SWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVV 573 >gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC 25986] gi|133776741|gb|EBA40561.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC 25986] Length = 369 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V K++ FGAFV +GLVHIS+++ + V + S V GD V VK+++ D Sbjct: 272 VGAIVEGTVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVTHVGDKVQVKVMEID 331 Query: 679 -DRGKIKLSMKVVDQNTGKPI 698 DR +I LSMK + G I Sbjct: 332 LDRRRISLSMKSAAETLGVEI 352 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V ++DFGAFV G DGL+HIS+LS V S+VVK G V V++LD D +R + Sbjct: 192 QGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 250 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K ++ + +V Sbjct: 251 ISLGLKQTTEDPWRALV 267 >gi|119897950|ref|YP_933163.1| transcription accessory protein [Azoarcus sp. BH72] gi|119670363|emb|CAL94276.1| transcription accessory protein [Azoarcus sp. BH72] Length = 773 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE I ++ D+ E + +G V V +FGAFV +DGLVHIS L+ V VVK Sbjct: 638 REGIETLKDL-EPGMMLEGVVTNVTNFGAFVDIGVHQDGLVHISALAERFVKDPHSVVKA 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 G V VK+L+ D R +I L+M++ D+ K Sbjct: 697 GQVVKVKVLEVDIPRNRIALTMRMGDEAAPK 727 >gi|313623122|gb|EFR93389.1| 30S ribosomal protein S1 [Listeria innocua FSL J1-023] Length = 381 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I++ V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV V Sbjct: 266 ISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L+ + D ++ LS+K Sbjct: 326 KVLEVNEDDKRLSLSIK 342 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + + ++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIK 256 >gi|271968816|ref|YP_003343012.1| RNA binding S1 domain-containing protein [Streptosporangium roseum DSM 43021] gi|270511991|gb|ACZ90269.1| RNA binding S1 domain protein [Streptosporangium roseum DSM 43021] Length = 797 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 18/143 (12%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618 IR VIG G V+R + Q +DD + + L+E+E R ++ T Sbjct: 579 IRKVIG-NGTVLRALRPQD----FVDDTFGLPTVTDILSELEKPGRDPRPAFKTATFKEG 633 Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V K+ +G V V FGAFV +DGLVH+S LS V +VVK GD V Sbjct: 634 VEKLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIV 693 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692 VK+LD D R +I L++++ D+ Sbjct: 694 RVKVLDVDIPRKRISLTLRLEDE 716 >gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437] Length = 391 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680 ++ +G V ++ DFGAFV G DGLVH+S+L+ RV S+V+ EGD V VK+L D + Sbjct: 201 QVMEGTVQRLTDFGAFVDIGGV-DGLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQ 259 Query: 681 G-KIKLSMK 688 +I LS+K Sbjct: 260 NERISLSIK 268 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V +++ FGAFV +GLVHISQ+S +A S+ ++EG V VK+LD ++ Sbjct: 287 IVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQ 346 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 347 KRISLSIK 354 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I KG+V KV D V DG++ IS+LS+ V K SDV+ EGD V VK++ +D Sbjct: 29 IVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIRINDEE 88 Query: 681 GKIKLSMKVVD 691 K+ LS K VD Sbjct: 89 DKLVLSKKAVD 99 >gi|323224272|gb|EGA08561.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 637 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 514 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 573 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 574 KRIALTMRLDEQ 585 >gi|270158185|ref|ZP_06186842.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163556|ref|YP_003453694.1| transcriptional accessory protein [Legionella longbeachae NSW150] gi|269990210|gb|EEZ96464.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856729|emb|CBJ10540.1| transcriptional accessory protein [Legionella longbeachae NSW150] Length = 781 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 30/239 (12%) Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAKRGRLHILN 533 +LS ISG + L + + + G +M++K +G + E A QQA G L I+N Sbjct: 504 LLSHISGLNETLAK-NIVLYRDEHGAFKNRMELKNVGRMGEK----AFQQAA-GFLRIMN 557 Query: 534 EMSKVLSESRLQLGEFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592 + + ++ E P VE I+A I+N+IG + +R + A+ +D+ Sbjct: 558 GDNPL--DASCVHPEAYPLVEKIIANKKVDIKNLIG-NKEQLRSV----NAEQFVDEQFG 610 Query: 593 VKIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 + L+E+E +E I I + E I +G V V +FGAF+ Sbjct: 611 LPTIKDVLSELEKPGRDPRPEFKTAQFKEGIEDIEHLQE-GMILEGVVSNVTNFGAFIDI 669 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 +DGLVHIS ++ + ++ VVK GD V VK+++ D +R +I LSMK+ D+ P Sbjct: 670 GVHQDGLVHISAMTHKFISDPRTVVKAGDIVTVKVVEIDKERKRIGLSMKLEDEPLSTP 728 >gi|257884453|ref|ZP_05664106.1| RNA binding protein S1 [Enterococcus faecium 1,231,501] gi|257820291|gb|EEV47439.1| RNA binding protein S1 [Enterococcus faecium 1,231,501] Length = 726 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|238921495|ref|YP_002935010.1| hypothetical protein NT01EI_3647 [Edwardsiella ictaluri 93-146] gi|238871064|gb|ACR70775.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 779 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ V I +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETLADL-SVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVEDPHKVVKAG 697 Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ +Q Sbjct: 698 DIVKVKVLEVDQARRRIALTMRLDEQ 723 >gi|294615654|ref|ZP_06695509.1| protein tex [Enterococcus faecium E1636] gi|291591483|gb|EFF23137.1| protein tex [Enterococcus faecium E1636] Length = 726 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041] gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041] Length = 413 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ +FGAFV G DGLVH+S++S + V K SDV+ G V VK+L D DR Sbjct: 204 VVEGKVARMTNFGAFVDLGGV-DGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDR 262 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 263 ERISLSIK 270 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V ++ FGAFV +GLVHISQ+S + +A +DV+K G V VK+L+ D +R ++ Sbjct: 292 GTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRL 351 Query: 684 KLSMKVVDQ 692 LSMK +++ Sbjct: 352 GLSMKALEE 360 >gi|119509069|ref|ZP_01628220.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414] gi|119466235|gb|EAW47121.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414] Length = 719 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE I+ I+D+ EV +G V V +FGAFV +DGLVHISQL+ V +VK Sbjct: 634 REGIKEISDL-EVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKV 692 Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQ 692 G V +++L+ +++ K I LS+K V Q Sbjct: 693 GQVVKIRVLEINEKLKRISLSIKAVKQ 719 >gi|213863357|ref|ZP_03386612.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 52 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 38/50 (76%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 EV ++Y G+V +++DFGAFV G ++GLVHISQ++ +RV K +D ++ G Sbjct: 1 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 50 >gi|329735684|gb|EGG71967.1| Tex-like protein N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 716 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHIS+LS + V D++ GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707 Query: 684 KLSMKVVDQN 693 L+M VD N Sbjct: 708 SLTM--VDPN 715 >gi|293374114|ref|ZP_06620449.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909] gi|325843793|ref|ZP_08168035.1| S1 RNA binding domain protein [Turicibacter sp. HGF1] gi|292647280|gb|EFF65255.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909] gi|325489289|gb|EGC91667.1| S1 RNA binding domain protein [Turicibacter sp. HGF1] Length = 118 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 38/64 (59%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G++ V FGAFV + GLVHIS+LS + V K DVV G V V++ + GKI Sbjct: 11 GKITSVKKFGAFVELENGKSGLVHISELSEKFVEKVEDVVSVGQEVTVRVKEVTPEGKIN 70 Query: 685 LSMK 688 LSMK Sbjct: 71 LSMK 74 >gi|227551626|ref|ZP_03981675.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330] gi|257895772|ref|ZP_05675425.1| RNA binding protein S1 [Enterococcus faecium Com12] gi|293377613|ref|ZP_06623802.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1] gi|227179189|gb|EEI60161.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330] gi|257832337|gb|EEV58758.1| RNA binding protein S1 [Enterococcus faecium Com12] gi|292643613|gb|EFF61734.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1] Length = 726 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|168178576|ref|ZP_02613240.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916] gi|226948426|ref|YP_002803517.1| 30S ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto] gi|182670770|gb|EDT82744.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916] gi|226844497|gb|ACO87163.1| ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto] Length = 387 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LDFD D KI LS+K V ++ Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271 >gi|311028994|ref|ZP_07707084.1| hypothetical protein Bm3-1_00278 [Bacillus sp. m3-13] gi|311032284|ref|ZP_07710374.1| hypothetical protein Bm3-1_17387 [Bacillus sp. m3-13] Length = 154 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGTTGLVHISEVADNYVKDINDHLKVGDEVQVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|293571809|ref|ZP_06682825.1| S1 RNA binding domain protein [Enterococcus faecium E980] gi|291608063|gb|EFF37369.1| S1 RNA binding domain protein [Enterococcus faecium E980] Length = 726 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|261367121|ref|ZP_05980004.1| RNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282571244|gb|EFB76779.1| RNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 154 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I +G+V + FGAFV + GLVHIS++S E V S V+++G TV VK+L Sbjct: 4 QVGDIVEGKVTGIKPFGAFVSLPEGKTGLVHISEVSYEFVQDLSAVLEDGQTVTVKVLSI 63 Query: 678 DDRGKIKLSMK 688 GKI LS+K Sbjct: 64 APDGKIALSIK 74 >gi|307132915|ref|YP_003884931.1| putative transcriptional accessory protein [Dickeya dadantii 3937] gi|306530444|gb|ADN00375.1| predicted transcriptional accessory protein [Dickeya dadantii 3937] Length = 781 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] Length = 250 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 VR DGR + +R I+ ++G GS+L G+T+ + T+ ++ + G Q Sbjct: 2 VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATI----EDGVPAWMRGQQG 57 Query: 372 NDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 Y LP AT + SR PS R RL RA+ + A T+ I ++ Sbjct: 58 GWVTAEYAMLPRATLQRSRRERNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDV 117 Query: 430 TESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSD 478 ++DG + A++ G +AL A P P+A +++G+++D +L D Sbjct: 118 LQADGGTRTASISGGYVALALAVDHLVRSGAVETYPTLTPLAAVSVGMIQD----TLLLD 173 Query: 479 ISGDEDHLGHMDFKV 493 + +ED +D V Sbjct: 174 LCYEEDSQADLDCNV 188 >gi|16801118|ref|NP_471386.1| 30S ribosomal protein S1 [Listeria innocua Clip11262] gi|16414553|emb|CAC97282.1| lin2052 [Listeria innocua Clip11262] gi|313618132|gb|EFR90228.1| 30S ribosomal protein S1 [Listeria innocua FSL S4-378] Length = 381 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I++ V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV V Sbjct: 266 ISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L+ + D ++ LS+K Sbjct: 326 KVLEVNEDDKRLSLSIK 342 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + + ++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIK 256 >gi|293556206|ref|ZP_06674796.1| protein Tex [Enterococcus faecium E1039] gi|291601625|gb|EFF31887.1| protein Tex [Enterococcus faecium E1039] Length = 726 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|157676010|emb|CAP07846.1| putative transcriptional accessory protein [Neisseria animalis] Length = 762 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I D+ + I +G V V +FGAFV +DGLVHIS LS + V +VVK G Sbjct: 629 EGINEIKDL-QPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAG 687 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ D+ Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713 >gi|294620344|ref|ZP_06699656.1| protein tex [Enterococcus faecium E1679] gi|291593415|gb|EFF24977.1| protein tex [Enterococcus faecium E1679] Length = 726 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|229845697|ref|ZP_04465820.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] gi|229811383|gb|EEP47089.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] Length = 770 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VVK G+ V VK+L+ D R +I L+M++ + +N GK Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 731 >gi|69248547|ref|ZP_00604768.1| RNA binding S1 [Enterococcus faecium DO] gi|257878425|ref|ZP_05658078.1| RNA binding protein S1 [Enterococcus faecium 1,230,933] gi|257882843|ref|ZP_05662496.1| RNA binding protein S1 [Enterococcus faecium 1,231,502] gi|257889376|ref|ZP_05669029.1| RNA binding protein S1 [Enterococcus faecium 1,231,410] gi|257894389|ref|ZP_05674042.1| RNA binding protein S1 [Enterococcus faecium 1,231,408] gi|260560014|ref|ZP_05832192.1| RNA binding protein S1 [Enterococcus faecium C68] gi|261207890|ref|ZP_05922575.1| RNA binding protein S1 [Enterococcus faecium TC 6] gi|289566958|ref|ZP_06447362.1| S1 RNA binding domain-containing protein [Enterococcus faecium D344SRF] gi|293559960|ref|ZP_06676468.1| protein tex [Enterococcus faecium E1162] gi|293569020|ref|ZP_06680333.1| S1 RNA binding domain protein [Enterococcus faecium E1071] gi|294623293|ref|ZP_06702158.1| protein tex [Enterococcus faecium U0317] gi|314948913|ref|ZP_07852282.1| S1 RNA binding domain protein [Enterococcus faecium TX0082] gi|68194393|gb|EAN08900.1| RNA binding S1 [Enterococcus faecium DO] gi|257812653|gb|EEV41411.1| RNA binding protein S1 [Enterococcus faecium 1,230,933] gi|257818501|gb|EEV45829.1| RNA binding protein S1 [Enterococcus faecium 1,231,502] gi|257825736|gb|EEV52362.1| RNA binding protein S1 [Enterococcus faecium 1,231,410] gi|257830768|gb|EEV57375.1| RNA binding protein S1 [Enterococcus faecium 1,231,408] gi|260073849|gb|EEW62173.1| RNA binding protein S1 [Enterococcus faecium C68] gi|260078273|gb|EEW65979.1| RNA binding protein S1 [Enterococcus faecium TC 6] gi|289161257|gb|EFD09153.1| S1 RNA binding domain-containing protein [Enterococcus faecium D344SRF] gi|291588453|gb|EFF20288.1| S1 RNA binding domain protein [Enterococcus faecium E1071] gi|291597321|gb|EFF28507.1| protein tex [Enterococcus faecium U0317] gi|291606048|gb|EFF35474.1| protein tex [Enterococcus faecium E1162] gi|313644703|gb|EFS09283.1| S1 RNA binding domain protein [Enterococcus faecium TX0082] Length = 726 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1] Length = 502 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ +GQV K V++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNQLQRGQVRKGVVSSVVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 265 VLDVDLDRERVSLSLKATQED 285 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ GD VK++D D Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGDDAMVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 356 LDRRRISLSLKQANE 370 >gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a] gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a] Length = 518 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 331 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 390 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LS+K ++ +G Sbjct: 391 LDRRRISLSLKQANEASG 408 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 248 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 306 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 307 RERVSLSLKATQEDPWR 323 >gi|111023499|ref|YP_706471.1| RNA binding protein [Rhodococcus jostii RHA1] gi|110823029|gb|ABG98313.1| possible RNA binding protein [Rhodococcus jostii RHA1] Length = 778 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 19/149 (12%) Query: 563 IRNVIGMGGKVIRGIVEQTGA--KVN----IDDDGTVKIASSSLAEIEAA----REMIRS 612 +R ++G G +R I+ T A +N +DD + + + E+E R ++ Sbjct: 565 VRKIVGASGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624 Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 T + K+ +G V V FGAFV +DGLVH+S +S V DVV Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684 Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 K GD V VK+L+ D+ R +I L++++ D+ Sbjct: 685 KSGDVVKVKVLEVDEARQRIGLTLRLDDE 713 >gi|314937788|ref|ZP_07845105.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04] gi|314941666|ref|ZP_07848546.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C] gi|314950968|ref|ZP_07854035.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A] gi|314992970|ref|ZP_07858366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B] gi|314996417|ref|ZP_07861460.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01] gi|313589399|gb|EFR68244.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01] gi|313592493|gb|EFR71338.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B] gi|313596823|gb|EFR75668.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A] gi|313599557|gb|EFR78400.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C] gi|313642819|gb|EFS07399.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04] Length = 726 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|170756770|ref|YP_001780782.1| 30S ribosomal protein S1 [Clostridium botulinum B1 str. Okra] gi|169121982|gb|ACA45818.1| ribosomal protein S1 [Clostridium botulinum B1 str. Okra] Length = 387 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LDFD D KI LS+K V ++ Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271 >gi|153931066|ref|YP_001383520.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397] gi|153935687|ref|YP_001387069.1| 30S ribosomal protein S1 [Clostridium botulinum A str. Hall] gi|152927110|gb|ABS32610.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397] gi|152931601|gb|ABS37100.1| ribosomal protein S1 [Clostridium botulinum A str. Hall] Length = 387 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LDFD D KI LS+K V ++ Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271 >gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814] gi|149752742|gb|EDM62673.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814] Length = 269 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E AR+ + +V I G V + ++GAFV GLVHISQ+S +R+ +DV Sbjct: 150 EKARKEREAKIAAVKVGSIVTGTVESLQNYGAFVDLGDGLSGLVHISQISLKRIKSPADV 209 Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690 + GD V VK++ D GKI LSMK + Sbjct: 210 LNVGDEVTVKIIGIKD-GKISLSMKAL 235 >gi|74317963|ref|YP_315703.1| hypothetical protein Tbd_1945 [Thiobacillus denitrificans ATCC 25259] gi|74057458|gb|AAZ97898.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 800 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%) Query: 605 AAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 A R+ I ++ D+ PE+ + +G V V FGAFV +DGLVHIS LS V V Sbjct: 649 AFRDGIETLADLKPEM--VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSFVKDPHTV 706 Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695 VK G V VK+L+ D+ R +I L+M++ D G Sbjct: 707 VKAGQIVKVKVLEVDEKRKRIALTMRLGDAAAG 739 >gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] Length = 250 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 21/201 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R IS ++G GS+L G T+ + T+ ++ + G Q Sbjct: 2 MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATV----EDGVPAWMRGQQS 57 Query: 372 NDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 Y LP AT + +R PS R RL R++ + A T+ I ++ Sbjct: 58 GWVTAEYAMLPRATLQRTRRERNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDV 117 Query: 430 TESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSD 478 ++DG + A + G +A L+ +GV P PVA +++G+++ ++L D Sbjct: 118 LQADGGTRTAAISGGYVALALAVDYLVRSGVLETRPTLTPVAAVSVGMLQG----VLLLD 173 Query: 479 ISGDEDHLGHMDFKVAGTDSG 499 + +ED +D V +G Sbjct: 174 LCYEEDSQADLDCNVVMNSAG 194 >gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2] gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2] Length = 422 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G+V K++ FGAFV +GLVHIS+++ + V + S V+ + V VK+++ D Sbjct: 291 VGAIVEGRVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVIHTNEAVQVKVMEID 350 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LSMK + G Sbjct: 351 LDRRRISLSMKAAAETLG 368 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V ++DFGAFV G DGL+HIS+LS V S+VVK G V V++LD D +R +I Sbjct: 212 GTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERI 270 Query: 684 KLSMKVVDQNTGKPIV 699 L +K ++ + +V Sbjct: 271 SLGLKQTTEDPWRALV 286 >gi|304436925|ref|ZP_07396889.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370124|gb|EFM23785.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 729 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++D+ V I +G V + DFGAF+ + GL+HIS++S RV DV+ Sbjct: 639 RQNIVKLSDLA-VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSRRRVKHPLDVLSV 697 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GDT+ V ++ D +RG+I LS+K +++ Sbjct: 698 GDTLDVMVISLDEERGRIGLSLKRMEK 724 >gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311] gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066] gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein [Streptococcus thermophilus ND03] Length = 400 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 6/87 (6%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 IEA +E+ + EV + G+V ++ FGAF+ G DGLVH+++LS ER Sbjct: 181 IEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 235 Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688 VV GD + VK+L D+ G++ LS+K Sbjct: 236 VVSVGDEIEVKVLAIDEEAGRVSLSLK 262 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFG FV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 281 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963] gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V + +FGAFV GA DGLVHISQL+ RV S+V+ G V V++L D + Sbjct: 256 EVRKGVVSNLANFGAFVDLGGA-DGLVHISQLAWSRVNHPSEVLHVGQEVEVQVLSVDKE 314 Query: 680 RGKIKLSMK 688 R KI LS+K Sbjct: 315 RKKIALSIK 323 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V K+ FGAF +GL+H S+L+ K+ +++EG + +++L D + Sbjct: 341 QLVNGTVTKIAPFGAFARIEDGIEGLIHHSELAPGTDPKS--ILQEGAQLQLRILRIDPE 398 Query: 680 RGKIKLSMKVVDQ 692 R ++ LS++ VD+ Sbjct: 399 RRRLGLSLRQVDE 411 >gi|288574973|ref|ZP_06393330.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570714|gb|EFC92271.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 512 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGKI 683 +VV++ DFGAFV +GL+HISQLST RV K DV+ EG V ++++ DDR +I Sbjct: 394 KVVRLADFGAFVELEKGVEGLIHISQLSTRRVEKPGDVLSEGQEVTARVIEVNPDDR-RI 452 Query: 684 KLSMKVVDQ 692 +LS+ +++ Sbjct: 453 RLSISALEE 461 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 7/89 (7%) Query: 602 EIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 E++ RE R +T+ + +G V + FG FV+ G DGLVHIS+LS +R AK Sbjct: 203 ELKEQRENFYRDVTE----GTVLEGTVSSLTSFGVFVNL-GPIDGLVHISELSWQRNAKP 257 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D+ K+GDTV VK++ D + +I LS+K Sbjct: 258 KDIAKKGDTVKVKVIGIDQEHNRISLSVK 286 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 G V V DFGAFV +GL+HI LS R+ +V+K+G V +L+ D Sbjct: 308 GTVTNVTDFGAFVEVEPGIEGLIHIGDLSWTRIKHPKEVIKKGQEVETVVLNVD 361 >gi|119776640|ref|YP_929380.1| hypothetical protein Sama_3508 [Shewanella amazonensis SB2B] gi|119769140|gb|ABM01711.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 778 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 4/85 (4%) Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + + D+ PE+ I +G V V +FGAFV +DGLVHIS LS + V+ VVK Sbjct: 641 KEGVTEVRDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVK 698 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689 GD V VK+++ D +R +I LSM++ Sbjct: 699 AGDVVKVKVMEVDVERKRIGLSMRL 723 >gi|268610466|ref|ZP_06144193.1| RNA binding S1 [Ruminococcus flavefaciens FD-1] Length = 155 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 46/76 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ KIY G+V + +GAFV G G+VHIS+++ V++ D + E V VK++ Sbjct: 5 EIGKIYNGKVKGITQYGAFVDIEGGGSGMVHISEIANTYVSEIRDHLTENQEVKVKVIGI 64 Query: 678 DDRGKIKLSMKVVDQN 693 ++ GK+ LS+K +N Sbjct: 65 NEAGKVSLSIKKAAEN 80 >gi|259501961|ref|ZP_05744863.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041] gi|259170138|gb|EEW54633.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041] Length = 165 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 41/71 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV + GLVHISQ+S + + DV+ GDTV K+ Sbjct: 4 EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRI 63 Query: 678 DDRGKIKLSMK 688 D GKI LSMK Sbjct: 64 GDDGKIALSMK 74 >gi|119572064|gb|EAW51679.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_d [Homo sapiens] Length = 945 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 M FG FV G R +GLVHIS+L E RVA +DVV +G V VK+L F K LS Sbjct: 1 MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLS 59 Query: 687 MKVVDQNTGK 696 MK VDQ TG+ Sbjct: 60 MKDVDQETGE 69 >gi|251787890|ref|YP_003002611.1| RNA binding S1 domain-containing protein [Dickeya zeae Ech1591] gi|247536511|gb|ACT05132.1| RNA binding S1 domain protein [Dickeya zeae Ech1591] Length = 780 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM 44985] gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985] Length = 482 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG + +++FGAFV G DGLVH+S+LS + + S+VVK GD V V++LD D R Sbjct: 211 IKKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I +G+V K++ FGAFV +GLVHIS+LS + + VV D V VK++D D Sbjct: 293 IGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAVLVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSIKQANED 368 >gi|218528803|ref|YP_002419619.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum CM4] gi|218521106|gb|ACK81691.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum CM4] Length = 771 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSIDVPRKR 714 Query: 683 IKLSMKVVDQNTG 695 I LSM++ D G Sbjct: 715 IALSMRLDDPLEG 727 >gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri] gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri] Length = 250 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V V +GAFV G + GL+HISQ+S ER+ +V+ GD + V ++ Sbjct: 134 EVGDVVEGMVQAVKPYGAFVD-VGGQSGLLHISQISHERIVAVENVLSAGDRIKVLVMSK 192 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +RG++ LS K ++QN G Sbjct: 193 DAERGRLSLSTKKLEQNHG 211 >gi|52426262|ref|YP_089399.1| hypothetical protein MS2207 [Mannheimia succiniciproducens MBEL55E] gi|52308314|gb|AAU38814.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 771 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + I +G + V +FGAFV +DGLVHIS LS + V VVK G Sbjct: 640 EGVEEITDL-KAGMILEGTITNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 D V VK+L+ D R +I L+M++ Sbjct: 699 DVVKVKVLEVDVARRRIALTMRL 721 >gi|330466770|ref|YP_004404513.1| tex-like protein [Verrucosispora maris AB-18-032] gi|328809741|gb|AEB43913.1| tex-like protein protein-like protein [Verrucosispora maris AB-18-032] Length = 799 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 40/214 (18%) Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559 G++ENI+ L + G E+ KV SRL F + IP Sbjct: 518 AGLAENIV---LHRDANGPFRTRAELKKV---SRLGPKAFEQCAGFLRIPGGDDPLDSSS 571 Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606 P+ +R ++ G+ +R I+ ++ A +DD + + LAE+E Sbjct: 572 VHPEAYPVVRRILSSTGQDLRSIIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 631 Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 R ++ T V KI +G V V FGAFV +DGLVH+S +S Sbjct: 632 DPRPEFKTATFAEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTF 691 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 V +VVK GD V VK+LD D R +I L++++ Sbjct: 692 VKDPHEVVKSGDVVRVKVLDVDVPRKRISLTLRL 725 >gi|148379145|ref|YP_001253686.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502] gi|148288629|emb|CAL82710.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502] Length = 381 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 249 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 305 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 306 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 352 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 186 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 244 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LDFD D KI LS+K V ++ Sbjct: 245 VLDFDKDTKKIALSLKDVKKD 265 >gi|317506138|ref|ZP_07963961.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255560|gb|EFV14807.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 482 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG + +++FGAFV G DGLVH+S+LS + + S+VVK GD V V++LD D R Sbjct: 211 IKKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSR 269 Query: 681 GKIKLSMKVVDQN 693 ++ LS+K ++ Sbjct: 270 ERVSLSLKATQED 282 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I +G+V K++ FGAFV +GLVHIS+LS + + VV D V VK++D D Sbjct: 293 IGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAVLVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSIKQANED 368 >gi|293390844|ref|ZP_06635178.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951378|gb|EFE01497.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 771 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V VVK GD Sbjct: 642 VEEITDL-KAGMILEGMVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDV 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 V VK+L+ D R +I L+M++ + +N GK Sbjct: 701 VKVKVLEVDVARRRIALTMRLDESAVKNDGK 731 >gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272] gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272] Length = 489 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG + +++FGAFV G DGLVH+S+LS + + ++VV+ GD V V++LD D D Sbjct: 213 QVRKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVHIS+L+ V VV+ GD+V VK++D Sbjct: 295 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDI 354 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I LS+K ++ Sbjct: 355 DLERRRISLSLKQANET 371 >gi|62182006|ref|YP_218423.1| putative RNase R [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129639|gb|AAX67342.1| paral putative RNase R [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716494|gb|EFZ08065.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 776 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|326203351|ref|ZP_08193216.1| Tex-like protein [Clostridium papyrosolvens DSM 2782] gi|325986609|gb|EGD47440.1| Tex-like protein [Clostridium papyrosolvens DSM 2782] Length = 718 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVHISQL+ + V DVV GD V VK+++ D +R Sbjct: 648 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNPMDVVAVGDIVKVKVIEVDVER 707 Query: 681 GKIKLSMKVVD 691 +I L+M+ ++ Sbjct: 708 KRISLTMREIN 718 >gi|224585298|ref|YP_002639097.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469826|gb|ACN47656.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 776 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|167549292|ref|ZP_02343051.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442760|ref|YP_002042755.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401423|gb|ACF61645.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205325750|gb|EDZ13589.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 776 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|295835561|ref|ZP_06822494.1| transcriptional accessory protein [Streptomyces sp. SPB74] gi|295825552|gb|EFG64308.1| transcriptional accessory protein [Streptomyces sp. SPB74] Length = 866 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ E + +G V V FGAFV +DGLVH+S LS E V +VVK Sbjct: 785 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 843 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD V VK+LD D R +I L+++ Sbjct: 844 GDIVKVKVLDVDLPRKRISLTLR 866 >gi|299538307|ref|ZP_07051592.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1] gi|298726509|gb|EFI67099.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1] Length = 723 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L +R+ +VV GD TVWV+ +D +G Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDI-TKG 708 Query: 682 KIKLSM 687 +I L+M Sbjct: 709 RISLTM 714 >gi|297620416|ref|YP_003708553.1| hypothetical protein wcw_0172 [Waddlia chondrophila WSU 86-1044] gi|297375717|gb|ADI37547.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 746 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682 +G V V FGAFV +DGLVHIS+LS + + + SDVVK GD + V++LD D + K Sbjct: 648 EGVVTNVTAFGAFVDIGVHQDGLVHISELSDQFIKEPSDVVKAGDRLKVRVLDVDQKLKR 707 Query: 683 IKLSMKVVDQNTGKPIV 699 I LS K + T PI Sbjct: 708 ISLSAKSKSKGTA-PIA 723 >gi|320530146|ref|ZP_08031216.1| general stress protein 13 family protein [Selenomonas artemidis F0399] gi|320137579|gb|EFW29491.1| general stress protein 13 family protein [Selenomonas artemidis F0399] Length = 173 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 + +FGAFV + GL+HIS+++ V D +KE DTV VK+L DDRGKI LS+K Sbjct: 41 ITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSIKA 100 Query: 690 V 690 + Sbjct: 101 L 101 >gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f] gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f] Length = 492 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 282 RERVSLSLKATQEDPWR 298 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LS+K ++ + Sbjct: 366 LDRRRISLSLKQANEASA 383 >gi|188588993|ref|YP_001921151.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188499274|gb|ACD52410.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E3 str. Alaska E43] Length = 635 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+VV++ DFGAF+ DGLVHIS++S R+A S+V+ G+ V K+L+ D+ K + Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRV 628 Query: 684 KLSMK 688 LS+K Sbjct: 629 SLSIK 633 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + K +V + FGAF+ G DGL+H+SQ+S V D++K+ + + VK++ D Sbjct: 478 VGDVIKAEVKRFTKFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKDEMIEVKIIALD 536 Query: 679 DRGKIKLSM 687 K KLS+ Sbjct: 537 KENK-KLSL 544 >gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649] gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649] Length = 502 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S A +E + +R+ T + E+ K + G V +++FGAFV G DGLVH+S+LS + Sbjct: 188 SRRAWLEQTQSEVRT-TFLKELQKGQVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 245 Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ GD V V++LD D DR ++ LS+K ++ Sbjct: 246 HIDHPSEVVEVGDEVTVEVLDVDMDRERVSLSLKATQED 284 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FG+FV +GLVHIS+L+ V VV G ++VK++D D Sbjct: 295 IGQVVPGKVTKLVPFGSFVRVEDGIEGLVHISELAERHVELPEQVVTVGADIFVKVIDID 354 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 355 LERRRISLSLKQANED 370 >gi|332686755|ref|YP_004456529.1| transcription accessory protein, S1 RNA-binding domain [Melissococcus plutonius ATCC 35311] gi|332370764|dbj|BAK21720.1| transcription accessory protein, S1 RNA-binding domain [Melissococcus plutonius ATCC 35311] Length = 732 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS++ST+ V +D+V GD TVWV+ +D + Sbjct: 658 EGTVRNVIDFGAFVDIGVKQDGLVHISKMSTKFVKHPTDIVSVGDIVTVWVEEVDL-KKA 716 Query: 682 KIKLSM 687 +I L+M Sbjct: 717 RISLTM 722 >gi|251812215|ref|ZP_04826688.1| S1 domain RNA-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|251804312|gb|EES56969.1| S1 domain RNA-binding protein [Staphylococcus epidermidis BCM-HMP0060] Length = 232 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + SI D+ + K+ G V V+DFGAFV +DGLVHIS+LS + V D++ GD Sbjct: 150 VLSIEDLSKGMKL-NGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDI 208 Query: 670 VWVKLLDFD-DRGKIKLSM 687 V V +LD D ++GK+ L+M Sbjct: 209 VEVWILDIDENKGKVSLTM 227 >gi|27468585|ref|NP_765222.1| hypothetical protein SE1667 [Staphylococcus epidermidis ATCC 12228] gi|57867586|ref|YP_189241.1| S1 RNA-binding domain-containing protein [Staphylococcus epidermidis RP62A] gi|282876524|ref|ZP_06285390.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135] gi|293366034|ref|ZP_06612722.1| S1 domain RNA-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316132|gb|AAO05266.1|AE016749_212 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57638244|gb|AAW55032.1| S1 RNA binding domain protein [Staphylococcus epidermidis RP62A] gi|281294776|gb|EFA87304.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135] gi|291319757|gb|EFE60115.1| S1 domain RNA-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329734126|gb|EGG70444.1| Tex-like protein N-terminal domain protein [Staphylococcus epidermidis VCU045] Length = 716 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHIS+LS + V D++ GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707 Query: 684 KLSM 687 L+M Sbjct: 708 SLTM 711 >gi|326630018|gb|EGE36361.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 776 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|205354872|ref|YP_002228673.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274653|emb|CAR39707.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 775 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209] gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209] Length = 504 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631 I +Q AK+ D + S A +E + +RS +NK+ KGQV ++ Sbjct: 183 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 238 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 239 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDLDRERVSLSLKAT 297 Query: 691 DQN 693 ++ Sbjct: 298 QED 300 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 311 LGQVVPGRVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 370 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 371 LERRRISLSLKQANE 385 >gi|303239809|ref|ZP_07326333.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2] gi|302592746|gb|EFL62470.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2] Length = 143 Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KI +G+V + +FGAFV + GLVHIS+++ E V + E V VK++ Sbjct: 4 EVGKIVEGKVSGITNFGAFVQLSNGQTGLVHISEVAEEYVKDIKAHLNENQVVKVKIISV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 DKNGKISLSIK 74 >gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 28/245 (11%) Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQRND 373 + R + +R + + ++ GS L GDT+ I T+ E V S L G + Sbjct: 3 ENRKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATI-----ESKVPSFLKGEGKGW 57 Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y+ LP AT E + ++ ++G RL R++ ++ T+ + + Sbjct: 58 VTAEYSMLPRAT-ESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCD 116 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ G+ ++++ A +P+ +A I++G+V D I+ Sbjct: 117 VIQADGGTRTASITGAFVSMVLALNKLVEEKELSELPVEGYLAAISVGIVNDE----IML 172 Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 D+ G ED D VAGTD G +Q + S+N M L A++G ++ S Sbjct: 173 DLDGKEDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQS 232 Query: 537 KVLSE 541 + LSE Sbjct: 233 QALSE 237 >gi|161616544|ref|YP_001590509.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168232641|ref|ZP_02657699.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470413|ref|ZP_03076397.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198242502|ref|YP_002217463.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161365908|gb|ABX69676.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194456777|gb|EDX45616.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197937018|gb|ACH74351.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205333149|gb|EDZ19913.1| putative transcriptional accessory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|326625244|gb|EGE31589.1| Protein yhgF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 776 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS] gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS] Length = 791 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVH+SQLS + V +VVK GD V VK+++ D R Sbjct: 673 ILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVAR 732 Query: 681 GKIKLSMKV 689 +I LSMK+ Sbjct: 733 KRIGLSMKL 741 >gi|255320246|ref|ZP_05361431.1| transcriptional accessory protein [Acinetobacter radioresistens SK82] gi|255302685|gb|EET81917.1| transcriptional accessory protein [Acinetobacter radioresistens SK82] Length = 785 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 13/125 (10%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRS------ITDVPEVNK--IYK 624 I+ Q IDD + LAE+E R R+ ITDV ++ + + Sbjct: 587 IIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITDVKQLTEGMQLE 646 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V +FGAFV +DGLVHIS+L+ E V+ +VK G V V+++ D +R ++ Sbjct: 647 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVRVIQVDAERNRV 706 Query: 684 KLSMK 688 LSM+ Sbjct: 707 NLSMR 711 >gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402] gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402] Length = 387 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 D EV + +G+V+++ +FGAFV G DGLVHISQ++ + + K D + GD V VK+ Sbjct: 187 DEIEVGSVIEGEVLRITNFGAFVD-IGEVDGLVHISQITHDHIDKVEDALSIGDKVKVKV 245 Query: 675 LDFDDRG-KIKLSMK 688 L D ++ LSMK Sbjct: 246 LSVDKEAERVSLSMK 260 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + I G+VV++ +FGAFV GLVHISQ+S + + S+V++ G V VK+LD + Sbjct: 276 IGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDIN 335 Query: 679 -DRGKIKLSMK 688 + +I LS+K Sbjct: 336 KEEKRIGLSIK 346 >gi|207858744|ref|YP_002245395.1| transcription accessory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710547|emb|CAR34905.1| putative transcription accessory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 775 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec] gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec] Length = 493 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 282 RERVSLSLKATQEDPWR 298 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365 Query: 679 -DRGKIKLSMKVVDQNT 694 DR +I LS+K ++ + Sbjct: 366 LDRRRISLSLKQANEAS 382 >gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190] Length = 487 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ +GQV K V++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNQLARGQVRKGVVSSVVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 265 VLDVDLDRERVSLSLKATQED 285 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ GD VK++D D Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 356 LDRRRISLSLKQANE 370 >gi|322805479|emb|CBZ03043.1| SSU ribosomal protein S1p [Clostridium botulinum H04402 065] Length = 387 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ ++ D V + +G +VK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%) Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V + Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251 Query: 675 LDFD-DRGKIKLSMKVVDQN 693 LDFD D KI LS+K V ++ Sbjct: 252 LDFDKDTKKIALSLKDVKKD 271 >gi|322514508|ref|ZP_08067545.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976] gi|322119578|gb|EFX91656.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976] Length = 568 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V + D+GAFV G DGL+HI+ ++ +RV S+VV GD V VK+L FD DR Sbjct: 206 VVKGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDR 264 Query: 681 GKIKLSMKVVDQN 693 ++ L +K + Q+ Sbjct: 265 TRVSLGLKQLGQD 277 >gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM 43833] gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833] Length = 480 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD ++VK++D Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D +R +I LS+K ++ G + Sbjct: 355 DLERRRISLSLKQANEGVGADV 376 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D +R ++ LS+K ++ Sbjct: 265 VLDVDMERERVSLSLKATQED 285 >gi|240137316|ref|YP_002961785.1| transcriptional accessory protein [Methylobacterium extorquens AM1] gi|240007282|gb|ACS38508.1| transcriptional accessory protein [Methylobacterium extorquens AM1] Length = 771 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714 Query: 683 IKLSMKVVDQNTG 695 I LSM++ D G Sbjct: 715 IALSMRLDDPLEG 727 >gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533] gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533] gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026] Length = 400 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I +G+V + FGAF+ GLVH+S+++ + V K SDV+K G TV VK+L D D Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344 Query: 680 RGKIKLSMKVVDQNTGK 696 R +I LS+K D N K Sbjct: 345 R-RISLSIKQADPNAAK 360 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G+V ++ FGAFV G DGLVHIS++S + V K SDV+K G V VK++ Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|299472226|emb|CBN77196.1| 30S ribosomal protein S1 [Ectocarpus siliculosus] Length = 749 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + Y+G + V+ +GAFV +GLVHISQL+ E VA D VKEGD V V++L+ D Sbjct: 120 VGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLNVD 179 Query: 679 DRG-KIKLSMK 688 K+ LSM+ Sbjct: 180 GEARKLVLSMR 190 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 ++ G+VV ++ +GAFV+ G DGLVHIS+++ RV DV + G V V++ D + Sbjct: 607 DEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINT 666 Query: 679 DRGKIKLSM 687 D + LSM Sbjct: 667 DNNTVNLSM 675 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 4/78 (5%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVW 671 T+VP + +G VV +M++GAFV G DG+VHISQL ERV + V+ G V Sbjct: 397 TNVPS-EEWLEGTVVSIMNYGAFVRLDGDVDGMVHISQLDPHGERVDSVYNSVEIGQDVR 455 Query: 672 VKLLDFDDRG-KIKLSMK 688 V++L+ D K++L+M+ Sbjct: 456 VRILEADPSSRKLRLTMR 473 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+V + FGAFV DGL+HISQ++ + V+ D ++ G V V++++ D D ++ Sbjct: 518 GRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVIEVDVDNCRL 577 Query: 684 KLSMKVVDQNTGK 696 LSM+ QN+ + Sbjct: 578 GLSMREPRQNSPR 590 Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV---VKEGDTVWVKLLDFDD- 679 KG V V D+G FV+ G DGL+H+S++ST+R + ++ +EG V +++++ + Sbjct: 318 KGTVSAVADYGLFVNIEGV-DGLLHVSKMSTDRSITSENIHSHYEEGQEVEIRIMEVNTA 376 Query: 680 RGKIKLSM 687 K+ LSM Sbjct: 377 NNKMSLSM 384 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDF 677 ++ +V ++ +GAF G VHISQ+S E VA SDV+ G V V++ + Sbjct: 215 SQFVSAKVENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDVRIREV 274 Query: 678 DDR-GKIKLSM 687 D++ G+I +S+ Sbjct: 275 DEKLGRINMSL 285 >gi|312198706|ref|YP_004018767.1| RNA binding S1 domain protein [Frankia sp. EuI1c] gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c] Length = 493 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 282 RERVSLSLKATQEDPWR 298 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 366 LDRRRISLSLKQANE 380 >gi|269140622|ref|YP_003297323.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202] gi|267986283|gb|ACY86112.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202] gi|304560409|gb|ADM43073.1| YhgF [Edwardsiella tarda FL6-60] Length = 780 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ V I +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETLADL-SVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAG 697 Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692 D V VK+L+ D R +I L+M++ +Q Sbjct: 698 DIVKVKVLEVDQARRRIALTMRLDEQ 723 >gi|163850246|ref|YP_001638289.1| RNA-binding S1 domain-containing protein [Methylobacterium extorquens PA1] gi|163661851|gb|ABY29218.1| RNA binding S1 domain protein [Methylobacterium extorquens PA1] Length = 771 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714 Query: 683 IKLSMKVVDQNTG 695 I LSM++ D G Sbjct: 715 IALSMRLDDPLEG 727 >gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] gi|156865623|gb|EDO59054.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50] Length = 650 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G++ ++ DFGAFV D L+H+SQ+S + VAK DV K GD + K++DF Sbjct: 561 VGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFK 620 Query: 679 -DRGKIKLSMKVV 690 + KI LS+K + Sbjct: 621 PEEKKISLSVKAL 633 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AA+E+ I EV +G V V DFGAF+ GA DGL+HIS++S RV + Sbjct: 468 AAKELFEKI----EVGMTVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKMF 522 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K GDTV + D + KI LS+K + N Sbjct: 523 KVGDTVKAFIKDING-DKIALSLKFDETN 550 >gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] Length = 246 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 23/251 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R IS L+ GS GDT+ I TL +++ L GT Sbjct: 1 MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATL----EDKVPPFLKGTGE 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP +T + A R G RL RA+ V+ A T+ I Sbjct: 57 GWITAEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477 ++ ++DG + A++ G+ +AL+DA P+ +A +++G+V D + Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVNTIYTDPEKPFPVKDFLAAVSVGVV----DGAAVL 172 Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 D+ ED +D + T +G + +Q + ++ + L +RG +++ Sbjct: 173 DLCYAEDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQK 232 Query: 537 KVLSESRLQLG 547 +VL E ++G Sbjct: 233 EVLGELSWKVG 243 >gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707] gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707] Length = 528 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 248 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 306 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 307 RERVSLSLKATQED 320 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 331 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDID 390 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 391 LERRRISLSLKQANED 406 >gi|319897916|ref|YP_004136113.1| transcriptional accessory protein [Haemophilus influenzae F3031] gi|317433422|emb|CBY81803.1| predicted transcriptional accessory protein [Haemophilus influenzae F3031] Length = 770 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VVK G+ V VK+L+ D R +I L+M++ + +N GK Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731 >gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9] gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9] Length = 407 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I G V +++DFGAF+ +GLVHISQ++ VA +V+KEG V K+LDF+ + Sbjct: 290 IVTGTVRRIVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQ 349 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K ++ Sbjct: 350 KRVSLSIKETEE 361 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G V ++ FGAF+ G DGLVH+S++S + VA D V EG +V VK+L D GK Sbjct: 207 EGTVQRLTPFGAFIDIGGI-DGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGK 265 Query: 683 IKLSMK 688 I LSMK Sbjct: 266 ISLSMK 271 >gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017] gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017] Length = 495 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 209 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 267 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 268 VLDVDMDRERVSLSLKATQED 288 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ G V VK++D D Sbjct: 299 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDID 358 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 359 LERRRISLSLKQANE 373 >gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152] gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152] Length = 487 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 209 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 267 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 268 RERVSLSLKATQED 281 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 292 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 351 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 352 LERRRISLSLKQANED 367 >gi|295398579|ref|ZP_06808611.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563] gi|294973180|gb|EFG48975.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563] Length = 428 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 46/202 (22%) Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551 KV GT + + + +GGI + + + QA H+ N S VLSE + Sbjct: 208 KVTGTVARLANFGAFIDLGGIDGLVHISQIAQA-----HV-NHPSDVLSEGQ-------- 253 Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611 VE++ + D+ R I + K + Q G NI++ + AE+E Sbjct: 254 EVEVLVLSVDEERGRISLSIKAL-----QPGPWENIEE------KAPKGAELE------- 295 Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 G V +++DFGAFV +GLVHISQ+S + VA + + EG + Sbjct: 296 -------------GTVRRLVDFGAFVEVFPGVEGLVHISQISHDHVATPGEKLTEGQAIQ 342 Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692 VK+LD D + ++ LS+K +++ Sbjct: 343 VKVLDVDAENERLSLSIKALEE 364 >gi|317126803|ref|YP_004093085.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471751|gb|ADU28354.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522] Length = 141 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V ++ +K GD V VK+L+ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGDEVQVKVLNV 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 + GKI LS++ + P Sbjct: 64 ESDGKIGLSIRKAKEAPPSP 83 >gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268] gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268] Length = 367 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V ++ DFGAF+ D L+H+SQ+S + V K SDV++ G + +++D D Sbjct: 276 VGEIVTGRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLD 335 Query: 679 -DRGKIKLSMKVV 690 D KI LS+K + Sbjct: 336 VDNHKISLSIKAL 348 Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I G V + DFGAF+ GA DGL+HIS++S R+ + K G V V + + Sbjct: 196 IRTGVVKNLTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKLFKPGQEVEVLVKEISGE- 253 Query: 682 KIKLSMKVVDQNTGK 696 +I L+ K ++N K Sbjct: 254 RIALTRKFPNENPWK 268 >gi|209964723|ref|YP_002297638.1| Tex-like protein, transcription accessory protein (S1 RNA binding domain) [Rhodospirillum centenum SW] gi|209958189|gb|ACI98825.1| Tex-like protein, transcription accessory protein (S1 RNA binding domain) [Rhodospirillum centenum SW] Length = 796 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHISQLS V VVK GD V VK+L+ D R Sbjct: 652 VLEGVVTNVTNFGAFVDVGVHQDGLVHISQLSHTFVKDPRAVVKAGDIVKVKVLEVDLKR 711 Query: 681 GKIKLSMKVVDQ 692 ++ L+MK+ +Q Sbjct: 712 RRVALTMKLDEQ 723 >gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115] Length = 710 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD DR Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-DRE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|262380461|ref|ZP_06073615.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262297907|gb|EEY85822.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 790 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 13/125 (10%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRS------ITDVPEVNK--IYK 624 I+ Q IDD + LAE+E R R+ ITDV ++ + + Sbjct: 592 IIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITDVKQLTEGMQLE 651 Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V +FGAFV +DGLVHIS+L+ E V+ +VK G V V+++ D +R ++ Sbjct: 652 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVRVIQVDAERNRV 711 Query: 684 KLSMK 688 LSM+ Sbjct: 712 NLSMR 716 >gi|319424533|gb|ADV52607.1| Tex-like protein [Shewanella putrefaciens 200] Length = 813 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + ++ VVK GD V VK+++ Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ ++QN + Sbjct: 741 VDVERRRIGLSMRLDEAIEQNNAQ 764 >gi|145589404|ref|YP_001156001.1| RNA-binding S1 domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047810|gb|ABP34437.1| RNA binding S1 domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 784 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + + I +G V V FGAFV +DGLVHIS LS V VVK Sbjct: 651 KEGVEKISDL-KADMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKA 709 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 G V VK+L+ D+ R +I L+M++ D+ Sbjct: 710 GQVVKVKVLEVDEKRKRIALTMRLSDE 736 >gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311] gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066] Length = 417 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 6/87 (6%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 IEA +E+ + EV + G+V ++ FGAF+ G DGLVH+++LS ER Sbjct: 198 IEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 252 Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688 VV GD + VK+L D+ G++ LS+K Sbjct: 253 VVSVGDEIEVKVLAIDEEAGRVSLSLK 279 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFG FV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 298 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 357 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 358 ERVSLSIKALEE 369 >gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma proteobacterium IMCC1989] gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma proteobacterium IMCC1989] Length = 780 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 4/88 (4%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + ++ D VP + I +G + V +FGAFV +DGLVHIS LS V VVK Sbjct: 637 KEGVETLKDLVPAM--ILEGVITNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPRTVVK 694 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D R +I LSM++ D+ Sbjct: 695 AGDIVKVKVMEVDIPRKRIALSMRLEDE 722 >gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S] gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S] Length = 490 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 353 LERRRISLSLKQANED 368 >gi|300855310|ref|YP_003780294.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium ljungdahlii DSM 13528] gi|300435425|gb|ADK15192.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium ljungdahlii DSM 13528] Length = 637 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+VV+ +FGAFV D LVHISQ+S +R+ K DV+K G + K+L+ + D KI Sbjct: 568 GKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPEDVLKIGQEIKAKILEVNKDSEKI 627 Query: 684 KLSMKVVDQ 692 LS+K VD+ Sbjct: 628 ALSIKEVDE 636 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 +I +S + RE + T +V E + + G+V ++ DFGAFV G DGL+H+S+L Sbjct: 451 RIVASRRDLLRMEREKMEEQTWNVLEKDTVVDGEVRRLTDFGAFVDVQGV-DGLLHVSEL 509 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD 678 S RV K SDV+K GD + V +LD D Sbjct: 510 SWGRVGKPSDVLKIGDKIKVYILDID 535 >gi|251778389|ref|ZP_04821309.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082704|gb|EES48594.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 635 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+VV++ DFGAF+ DGLVHIS++S R+A S+V+ G+ V K+L+ D+ K + Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRV 628 Query: 684 KLSMK 688 LS+K Sbjct: 629 SLSIK 633 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + K +V + FGAF+ G DGL+H+SQ+S V D++K+G+ + VK++ D Sbjct: 481 VIKAEVKRFTKFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKGEMIEVKIIALDKEN 539 Query: 682 KIKLSM 687 K KLS+ Sbjct: 540 K-KLSL 544 >gi|218702152|ref|YP_002409781.1| transcriptional accessory protein [Escherichia coli IAI39] gi|218372138|emb|CAR20000.1| transcriptional accessory protein [Escherichia coli IAI39] Length = 773 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLKVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279] gi|210160057|gb|EEA91028.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279] Length = 386 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++DFGAFV G DGL+HIS+LS V S+VVK G V V++LD D +R + Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K ++ + +V Sbjct: 270 ISLGLKQTTEDPWRALV 286 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V K++ FGAFV +GLVHIS+++ + V + + V G V VK+++ D Sbjct: 291 VGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVGAKVQVKVMEID 350 Query: 679 -DRGKIKLSMKVVDQNTGKPI 698 DR +I LSMK + G I Sbjct: 351 LDRRRISLSMKSAAETLGIEI 371 >gi|146294886|ref|YP_001185310.1| RNA-binding S1 domain-containing protein [Shewanella putrefaciens CN-32] gi|145566576|gb|ABP77511.1| RNA binding S1 domain protein [Shewanella putrefaciens CN-32] Length = 813 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + ++ VVK GD V VK+++ Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ ++QN + Sbjct: 741 VDVERRRIGLSMRLDEAIEQNNAQ 764 >gi|330720456|gb|EGG98764.1| Transcription accessory protein (S1 RNA-binding domain) [gamma proteobacterium IMCC2047] Length = 561 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 7/97 (7%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + +I D+ + + + +G + V +FGAFV +DGLVHIS L+ + V VVK Sbjct: 426 KEGVETIKDL-QPDMVLEGTITNVTNFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKA 484 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKP 697 GD V VK++ D +R +I L+M++ D Q G+P Sbjct: 485 GDIVKVKVMAVDVERKRIGLTMRMADSAADQQGQGEP 521 >gi|317050911|ref|YP_004112027.1| RNA-binding S1 domain-containing protein [Desulfurispirillum indicum S5] gi|316945995|gb|ADU65471.1| RNA binding S1 domain protein [Desulfurispirillum indicum S5] Length = 544 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL + + + +I + E + KG+VV +D+GAFV +GL+HIS++S T RV Sbjct: 269 SLGYKQKSDDPWNNIAERCECGTVVKGKVVSFVDYGAFVEIEPGIEGLIHISEMSWTSRV 328 Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693 S V+K GD V V++LD D ++ LS++ V N Sbjct: 329 RSPSQVLKIGDEVEVRILDIDSENRRLSLSLRAVRPN 365 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG++ + +FGAF+ DGL+HIS +S R S++VK GD V K+L FD Sbjct: 376 VGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNHPSEIVKVGDEVEAKVLAFD 435 Query: 679 -DRGKIKLSMKVVDQN 693 ++ ++ L +K +++N Sbjct: 436 REKERLSLGLKQLEEN 451 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682 G VV + DFGAFV +GL+H+S++S +R+ + SDV+ G + ++ +DR + Sbjct: 468 GTVVNLTDFGAFVKLEDGVEGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDR-R 526 Query: 683 IKLSMKVVDQ 692 I LSMK V + Sbjct: 527 IGLSMKEVGE 536 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + G+V + ++G F+ G DGL+HI+ +S RV+ S V EGD V V +LDF+ Sbjct: 207 LLTGRVKNITEYGVFIDL-GGFDGLLHITDISWGRVSHPSAVFSEGDEVEVVVLDFN 262 >gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025] gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 708 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + ++D+ ++ + +G + V+DFGAFV DGL+HISQ+S V S +V Sbjct: 621 RQDVLELSDL-KIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAV 679 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQ 692 GD TVWV +D +RGK+ LS+ +++ Sbjct: 680 GDVVTVWVSKIDI-ERGKVNLSLVALNE 706 >gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03] gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03] Length = 398 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I +G+V + FGAF+ GLVH+S+++ + V K SDV+K G TV VK+L D D Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344 Query: 680 RGKIKLSMKVVDQNTGK 696 R +I LS+K D N K Sbjct: 345 R-RISLSIKQADPNAAK 360 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G+V ++ FGAFV G DGLVHIS++S + V K SDV+K G V VK++ Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM 13280] gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM 13280] Length = 386 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V ++DFGAFV G DGL+HIS+LS V S+VVK G V V++LD D +R + Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 269 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K ++ + +V Sbjct: 270 ISLGLKQTTEDPWRALV 286 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V K++ FGAFV +GLVHIS+++ + V + + V G V VK+++ D Sbjct: 291 VGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVGSKVQVKVMEID 350 Query: 679 -DRGKIKLSMKVVDQNTGKPI 698 DR +I LSMK + G I Sbjct: 351 LDRRRISLSMKSAAETLGIEI 371 >gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1] gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1] Length = 491 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631 I +Q AK+ D + S A +E + +RS +NK+ KGQV ++ Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282 Query: 691 DQN 693 ++ Sbjct: 283 QED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 >gi|312882892|ref|ZP_07742624.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369411|gb|EFP96931.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC BAA-2122] Length = 767 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++D+ E + +G V V +FGAFV +DGLVHIS L+ + V+ +VVK G Sbjct: 638 EGVNKVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVSDPREVVKAG 696 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ D+ Sbjct: 697 DIVKVKVMEVDVKRKRIGLSMRLNDE 722 >gi|209559042|ref|YP_002285514.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131] gi|209540243|gb|ACI60819.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131] Length = 710 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Monodelphis domestica] Length = 245 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 10/207 (4%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E + S Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-MRGSRS 63 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424 + R Y+ +TGE R R+ G R+ + T +P + + Sbjct: 64 RALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAI-LTQLYPRSQID 122 Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484 I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S E+ Sbjct: 123 IYVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178 Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKI 509 G + + + ++MD ++ Sbjct: 179 AAGGPQLALALLPASGQLALLEMDARL 205 >gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159] gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory protein [Streptococcus mutans UA159] Length = 708 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + ++D+ ++ + +G + V+DFGAFV DGL+HISQ+S V S +V Sbjct: 621 RQDVLELSDL-KIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAV 679 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQ 692 GD TVWV +D +RGK+ LS+ +++ Sbjct: 680 GDVVTVWVSKIDI-ERGKVNLSLVALNE 706 >gi|150015329|ref|YP_001307583.1| RNA-binding S1 domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901794|gb|ABR32627.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 725 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + G V V DFGAFV +DGLVH SQ++ V D+VK GD V V +L+ D+ R Sbjct: 650 VLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVAILEVDEKR 709 Query: 681 GKIKLSMKVVDQN 693 +I L+MK +D++ Sbjct: 710 KRISLTMKDIDES 722 >gi|295397064|ref|ZP_06807176.1| YhgF like protein [Aerococcus viridans ATCC 11563] gi|294974656|gb|EFG50371.1| YhgF like protein [Aerococcus viridans ATCC 11563] Length = 715 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS++ST+ V+ SD V GD VWV +D + +G Sbjct: 647 QGTVRNVVDFGAFVDVGVKQDGLVHISRMSTKFVSNPSDFVSVGDIVEVWVSEVD-EKKG 705 Query: 682 KIKLSM 687 +I LSM Sbjct: 706 RIGLSM 711 >gi|29828211|ref|NP_822845.1| transcription accessory protein [Streptomyces avermitilis MA-4680] gi|29605313|dbj|BAC69380.1| putative transcription accessory protein [Streptomyces avermitilis MA-4680] Length = 810 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 643 KEGVEKISDLAS-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKP 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 702 GDIVKVKVLDIDIPRKRISLTLRLDDE 728 >gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782] gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782] Length = 710 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar] gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar] Length = 245 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 34/245 (13%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R + A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKT 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418 + ++ Q Y+ +T E RR G + ++H L QT + Sbjct: 66 LHDRAVINCQ-------YSMATFSTAE------RKRRPHGDRKSTEMSLH--LKQTFEAA 110 Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P + + I +I +SDG + A V ++LA++DAG+P+ V G V D Sbjct: 111 VLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFV----D 166 Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530 L+D+ E+ G +A G I +QMD ++ ++ A A +G Sbjct: 167 ETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSK 226 Query: 531 ILNEM 535 +L+E+ Sbjct: 227 VLDEV 231 >gi|157372859|ref|YP_001480848.1| RNA-binding S1 domain-containing protein [Serratia proteamaculans 568] gi|157324623|gb|ABV43720.1| RNA binding S1 domain protein [Serratia proteamaculans 568] Length = 777 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + +++D+ + I +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETLSDL-QPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAG 697 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ +Q Sbjct: 698 DIVKVKVMEVDLQRKRIALSMRLDEQ 723 >gi|152988034|ref|YP_001351262.1| hypothetical protein PSPA7_5945 [Pseudomonas aeruginosa PA7] gi|150963192|gb|ABR85217.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 779 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|15674668|ref|NP_268842.1| hypothetical protein SPy_0580 [Streptococcus pyogenes M1 GAS] gi|21909945|ref|NP_664213.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315] gi|28896358|ref|NP_802708.1| hypothetical protein SPs1446 [Streptococcus pyogenes SSI-1] gi|71903127|ref|YP_279931.1| transcription accessory protein [Streptococcus pyogenes MGAS6180] gi|71910293|ref|YP_281844.1| transcription accessory protein [Streptococcus pyogenes MGAS5005] gi|13621785|gb|AAK33563.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|21904133|gb|AAM79016.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315] gi|28811609|dbj|BAC64541.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71802222|gb|AAX71575.1| transcription accessory protein [Streptococcus pyogenes MGAS6180] gi|71853075|gb|AAZ51098.1| transcription accessory protein [Streptococcus pyogenes MGAS5005] Length = 710 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785] gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785] Length = 400 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I +G+V + FGAF+ GLVH+S+++ + V K SDV+K G TV VK+L D D Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344 Query: 680 RGKIKLSMKVVDQNTGK 696 R +I LS+K D N K Sbjct: 345 R-RISLSIKQADPNAAK 360 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G+V ++ FGAFV G DGLVHIS++S + + K SDV+K G V VK++ Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DD+ +I LS+K Sbjct: 256 DDKHRISLSIK 266 >gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160] Length = 488 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +NK+ KGQV +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNKLAKGQVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 265 VLDVDLDRERVSLSLKATQED 285 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 7/94 (7%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD + Sbjct: 288 RQFARTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEI 347 Query: 671 WVKLLDFD-DRGKIKLSMK------VVDQNTGKP 697 VK++D D DR +I LS+K V D++T P Sbjct: 348 LVKVIDIDLDRRRISLSLKQANEGVVGDEDTFDP 381 >gi|220904477|ref|YP_002479789.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868776|gb|ACL49111.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 489 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 ++ D G V+IA L+ +A + + +T E + +G+VV++ FGAFV + Sbjct: 259 ISKSDKGQVRIA---LSRKQAEGDPWQDVTQRLENGAVVQGKVVRLAPFGAFVEILPGIE 315 Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 GLVHIS+LS T+RV K ++++ GD V VK+ + + D +I LS++ Sbjct: 316 GLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINADSRRISLSLR 361 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ + V +G++ + FGAF+ A +G++H+S+LS RV + V Sbjct: 189 QEQLEALLEKLGVGDTVEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSL 248 Query: 667 GDTVWVKLLDF--DDRGKIKLSM 687 GDTV K+L D+G++++++ Sbjct: 249 GDTVRAKVLSISKSDKGQVRIAL 271 >gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183] Length = 487 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD ++VK++D Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354 Query: 678 D-DRGKIKLSMKVVDQNT 694 D DR +I LS+K ++ Sbjct: 355 DLDRRRISLSLKQANETA 372 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D +R ++ LS+K ++ Sbjct: 265 VLDVDMERERVSLSLKATQED 285 >gi|145640544|ref|ZP_01796128.1| DNA gyrase subunit B [Haemophilus influenzae R3021] gi|145275130|gb|EDK14992.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790] gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790] Length = 239 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 20/237 (8%) Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368 D +R+DGR +R I G++ GS+ G + +V V + E Y Sbjct: 9 DDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYV----REAYPKHAQN 64 Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427 + YN + E R G P RR + +L A+ + + P + + Sbjct: 65 IDKAIVKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAI-MVERLPRAEIDVYI 122 Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487 E+ E+D + +A++ +S+A+ DAG+P+ G G ++ D+S DED+ G Sbjct: 123 EVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGK----VVLDLSKDEDNYG 178 Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542 D +A I +Q+D G +SE L++A L + +S++ E+ Sbjct: 179 DADIPMAILPKSGKIILLQLD---GDVSEQ----ELEEAMEMMLGAMKNISRIQREA 228 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 14 RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFPLTVN--YQERTYAV 70 RP+++ TG + +DG+ +G +V+A V + K Q+ V Y ++V Sbjct: 23 RPIRITTG-VVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKARYNMAGFSV 81 Query: 71 GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128 + R+ P + IS++I ++ + + + E V I V++ D + + Sbjct: 82 EE------RKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEAD--AGTRI 133 Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171 S+ AAS A+ +G+P + VG NG+ VL+ DED Sbjct: 134 ASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDN 176 >gi|68467887|ref|XP_722102.1| hypothetical protein CaO19.11516 [Candida albicans SC5314] gi|68468204|ref|XP_721941.1| hypothetical protein CaO19.4033 [Candida albicans SC5314] gi|46443884|gb|EAL03163.1| hypothetical protein CaO19.4033 [Candida albicans SC5314] gi|46444050|gb|EAL03328.1| hypothetical protein CaO19.11516 [Candida albicans SC5314] Length = 996 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674 P+V KIY G V V ++GAF+ G GL HISQ+S + RV T +V+ V+VK+ Sbjct: 73 PQVGKIYSGVVQSVTNYGAFIKIEGT-SGLCHISQMSFDGSRVEST-NVLAPNQKVFVKV 130 Query: 675 LDFDDRG-KIKLSMKVVDQNTG 695 +D +I LSM+ ++QNTG Sbjct: 131 IDIQTHANRISLSMRGINQNTG 152 >gi|297521212|ref|ZP_06939598.1| putative transcriptional accessory protein [Escherichia coli OP50] Length = 436 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 316 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 375 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 376 KRIALTMRL 384 >gi|294138936|ref|YP_003554914.1| S1 RNA binding domain-containing protein [Shewanella violacea DSS12] gi|293325405|dbj|BAJ00136.1| S1 RNA binding domain protein [Shewanella violacea DSS12] Length = 780 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + ++ +VK GD V VK+++ D +R Sbjct: 657 ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEIDVER 716 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ ++ KP Sbjct: 717 KRIALTMRLDEKAGDKP 733 >gi|122921517|pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 644 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 703 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 742 >gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus] gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus] Length = 245 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 E+ G + + I ++MD + + E+ + L+ A R + + +V Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRV 231 Query: 539 LSE 541 + + Sbjct: 232 VRQ 234 >gi|116053349|ref|YP_793673.1| hypothetical protein PA14_68710 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588570|gb|ABJ14585.1| putative transcriptional accessory protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415] gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415] Length = 400 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 5/85 (5%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AAR+ I S EV I G+V ++ FGAFV G DGLVH+++LS ER VV Sbjct: 182 AARQEIFSKL---EVGSIVTGKVARLTSFGAFVDLGGV-DGLVHVTELSHERNVSPKSVV 237 Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMK 688 GD + VK+L D+ G+I LS+K Sbjct: 238 SVGDEIDVKVLAIDEEAGRISLSLK 262 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L D D Sbjct: 281 VIDGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K + + Sbjct: 341 ERVSLSIKALQE 352 >gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. sepedonicus] gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+LS + V VV GD V+VK++D D Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVAEGIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 355 LERRRISLSLK 365 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 205 LNNLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L+ D DR ++ LS+K ++ Sbjct: 264 ILEVDLDRERVSLSLKATQED 284 >gi|50913850|ref|YP_059822.1| transcription accessory protein [Streptococcus pyogenes MGAS10394] gi|50902924|gb|AAT86639.1| transcription accessory protein [Streptococcus pyogenes MGAS10394] Length = 710 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|313632617|gb|EFR99603.1| 30S ribosomal protein S1 [Listeria seeligeri FSL N1-067] gi|313637165|gb|EFS02697.1| 30S ribosomal protein S1 [Listeria seeligeri FSL S4-171] Length = 381 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I++ V + +G+VV+++ FGAFV +GLVHISQ+S + + +V+ EG+T+ V Sbjct: 266 ISEKASVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGETIEV 325 Query: 673 KLLDFDDRGKIKLSMKVVD 691 K+L+ ++ K +LS+ + D Sbjct: 326 KVLEVNEADK-RLSLSIKD 343 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + + ++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYQHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256 >gi|307571520|emb|CAR84699.1| rpsA [Listeria monocytogenes L99] Length = 401 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 292 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 351 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 352 EADKRLSLSIK 362 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 178 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 235 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 236 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 276 >gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379] gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379] Length = 402 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V FGAFV +GLVHISQ+S ERV DV+K+GD V VK+L+FD + + Sbjct: 297 EGVVRNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDFENER 356 Query: 683 IKLSMK 688 + LS+K Sbjct: 357 LSLSIK 362 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 3/92 (3%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 + E E A+++ ++ E + +G+V ++ DFGAFV+ G DGL+HIS++S RV K Sbjct: 189 ILEEEKAKKLAEVYGNINE-GDVIEGKVSRITDFGAFVN-IGEVDGLLHISEISHARVEK 246 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +DV+ GDT+ V ++ D + K+ LS K + Sbjct: 247 VADVLSVGDTIKVAVIAVDKENEKVSLSAKTL 278 >gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200] gi|255972809|ref|ZP_05423395.1| SSU ribosomal protein S1P [Enterococcus faecalis T1] gi|257422631|ref|ZP_05599621.1| 30S ribosomal protein S1 [Enterococcus faecalis X98] gi|312951481|ref|ZP_07770377.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102] gi|229304834|gb|EEN70830.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200] gi|255963827|gb|EET96303.1| SSU ribosomal protein S1P [Enterococcus faecalis T1] gi|257164455|gb|EEU94415.1| 30S ribosomal protein S1 [Enterococcus faecalis X98] gi|310630447|gb|EFQ13730.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102] gi|315152496|gb|EFT96512.1| putative ribosomal protein S1 [Enterococcus faecalis TX0031] gi|315155774|gb|EFT99790.1| putative ribosomal protein S1 [Enterococcus faecalis TX0043] gi|315158059|gb|EFU02076.1| putative ribosomal protein S1 [Enterococcus faecalis TX0312] gi|315169715|gb|EFU13732.1| putative ribosomal protein S1 [Enterococcus faecalis TX1342] Length = 403 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAF+ G DGLVH+S+++ + V K SD + G+ V VK+L + D Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPDE 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ + + Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351 Query: 681 GKIKLSMKVVD 691 +I LS+K ++ Sbjct: 352 HRIALSIKALE 362 >gi|326330770|ref|ZP_08197072.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1] gi|325951453|gb|EGD43491.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1] Length = 811 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V FGAF+ +DGLVHIS +S + V DVV+ GD V VK+L+ D+ R Sbjct: 708 VLEGTVTNVAAFGAFIDIGVHQDGLVHISAMSDKFVEDPRDVVRSGDVVRVKVLEVDEAR 767 Query: 681 GKIKLSMKVVDQ-NTGKP 697 +I L++++ D+ +G P Sbjct: 768 KRISLTLRLNDEAPSGAP 785 >gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233] gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233] Length = 485 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 203 LNQLGKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 261 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 262 VLDVDMDRERVSLSLKATQED 282 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV D ++V+++D D Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVYDGIEGLVHISELAGRHVEVPEQVVTVDDEIFVRVIDID 352 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 353 LERRRISLSLK 363 >gi|90412697|ref|ZP_01220698.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK] gi|90326272|gb|EAS42691.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK] Length = 784 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G + V +FGAFV +DGLVHIS LS + ++ +VVK GD V VK+++ D R Sbjct: 653 ILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 713 KRIAMSMRMGDE 724 >gi|81429179|ref|YP_396180.1| putative transcription accessory protein, RNA-binding [Lactobacillus sakei subsp. sakei 23K] gi|78610822|emb|CAI55873.1| Putative transcription accessory protein, RNA-binding [Lactobacillus sakei subsp. sakei 23K] Length = 725 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 N +G V V+DFGAFV DGLVHISQL+ V SD V GD V V +L D Sbjct: 650 NMALEGTVRNVIDFGAFVDIGVKHDGLVHISQLANHFVKHPSDEVSVGDVVQVWVLSVDQ 709 Query: 679 DRGKIKLSMK 688 +R +++L+MK Sbjct: 710 ERERVQLTMK 719 >gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24] gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24] Length = 491 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631 I +Q AK+ D + S A +E + +RS +NK+ KGQV ++ Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282 Query: 691 DQN 693 ++ Sbjct: 283 QED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 >gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6] gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] Length = 491 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631 I +Q AK+ D + S A +E + +RS +NK+ KGQV ++ Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282 Query: 691 DQN 693 ++ Sbjct: 283 QED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 >gi|218894303|ref|YP_002443173.1| putative transcriptional accessory protein [Pseudomonas aeruginosa LESB58] gi|218774532|emb|CAW30349.1| putative transcriptional accessory protein [Pseudomonas aeruginosa LESB58] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3] gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3] Length = 492 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631 I +Q AK+ D + S A +E + +RS +NK+ KGQV ++ Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282 Query: 691 DQN 693 ++ Sbjct: 283 QED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 >gi|296392058|ref|ZP_06881533.1| putative transcriptional accessory protein [Pseudomonas aeruginosa PAb1] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|139474204|ref|YP_001128920.1| transcription accessory protein [Streptococcus pyogenes str. Manfredo] gi|134272451|emb|CAM30708.1| putative transcription accessory protein [Streptococcus pyogenes str. Manfredo] Length = 710 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|119475503|ref|ZP_01615856.1| Transcriptional accessory protein [marine gamma proteobacterium HTCC2143] gi|119451706|gb|EAW32939.1| Transcriptional accessory protein [marine gamma proteobacterium HTCC2143] Length = 777 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 ++ + I+D+ E I +G V V +FGAF+ +DGLVHIS LS V VVK Sbjct: 642 KDGVEKISDLVE-EMILEGTVTNVTNFGAFIDIGVHQDGLVHISALSNTFVKDPRAVVKA 700 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D R +I LSM++ D+ Sbjct: 701 GDIVRVKVMEVDTQRKRIALSMRLDDK 727 >gi|46908171|ref|YP_014560.1| 30S ribosomal protein S1 [Listeria monocytogenes serotype 4b str. F2365] gi|226224542|ref|YP_002758649.1| hypothetical protein Lm4b_01955 [Listeria monocytogenes Clip81459] gi|254825567|ref|ZP_05230568.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194] gi|254852840|ref|ZP_05242188.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503] gi|254931891|ref|ZP_05265250.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262] gi|255521524|ref|ZP_05388761.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-175] gi|300763752|ref|ZP_07073749.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017] gi|46881441|gb|AAT04737.1| putative ribosomal protein S1 [Listeria monocytogenes serotype 4b str. F2365] gi|225877004|emb|CAS05713.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606170|gb|EEW18778.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503] gi|293583443|gb|EFF95475.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262] gi|293594810|gb|EFG02571.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194] gi|300515488|gb|EFK42538.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017] gi|328466286|gb|EGF37443.1| 30S ribosomal protein S1 [Listeria monocytogenes 1816] gi|328472781|gb|EGF43630.1| 30S ribosomal protein S1 [Listeria monocytogenes 220] gi|332312378|gb|EGJ25473.1| 30S ribosomal protein S1 [Listeria monocytogenes str. Scott A] Length = 381 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 332 EADKRLSLSIK 342 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256 >gi|28211189|ref|NP_782133.1| 30S ribosomal protein S1 [Clostridium tetani E88] gi|28203629|gb|AAO36070.1| SSU ribosomal protein S1P [Clostridium tetani E88] Length = 387 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G VVK+++FGAFV +GL+HIS++S ER+ K +V+K GD + VK+LD + K+ Sbjct: 288 GTVVKLVEFGAFVELKDGLEGLLHISEISEERILKPEEVLKIGDKIKVKILDINKENRKM 347 Query: 684 KLSMKVVDQNT 694 LS K + + Sbjct: 348 SLSKKAAEDKS 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 6/91 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E+ +++ + ++N G+VV+++ FG FV G +GLVH+S LS +RV SD+VKEG Sbjct: 190 ELWKTLKEGEKIN----GKVVRLVKFGVFVDIGGI-EGLVHLSDLSWKRVNNPSDIVKEG 244 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 D V V +L+ D R ++ L++K + ++ K Sbjct: 245 DEVEVFILNVDKKRERLGLALKDIKEDPWKK 275 >gi|320539829|ref|ZP_08039488.1| putative transcriptional accessory protein [Serratia symbiotica str. Tucson] gi|320030015|gb|EFW12035.1| putative transcriptional accessory protein [Serratia symbiotica str. Tucson] Length = 776 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ +Q Sbjct: 712 KRIALSMRLDEQ 723 >gi|317497528|ref|ZP_07955847.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895211|gb|EFV17374.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae bacterium 5_1_63FAA] Length = 632 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V ++ DFGAFV D L+H+SQ++ E + K SDV+ G + K++DF Sbjct: 550 KVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDF 609 Query: 678 -DDRGKIKLSMKVV 690 D KI LSMK + Sbjct: 610 KKDDKKISLSMKAL 623 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +E + + + EV +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 452 VAAKKEKQKELFEKIEVGMKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 510 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + D KI LS+K ++N Sbjct: 511 VFNIGDKVTVLIKDIQGE-KIALSLKFPEEN 540 >gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200] gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200] Length = 400 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679 I +G+V + FGAF+ GLVH+S+++ + V K SDV+K G TV VK+L D D Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSD 344 Query: 680 RGKIKLSMKVVDQNTGK 696 R +I LS+K D N K Sbjct: 345 R-RISLSIKQADPNAAK 360 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G+V ++ FGAFV G DGLVHIS++S + + K SDV+K G V VK++ Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGID 255 Query: 678 DDRGKIKLSMK 688 DDR +I LS+K Sbjct: 256 DDRHRISLSIK 266 >gi|254993213|ref|ZP_05275403.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-064] Length = 381 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 332 EADKRLSLSIK 342 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256 >gi|254452060|ref|ZP_05065497.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238] gi|198266466|gb|EDY90736.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238] Length = 773 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 19/144 (13%) Query: 564 RNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAA----REMIRSI 613 R ++ G+ IR I+ T A +DD + L E+E R ++ Sbjct: 576 RKIVQACGRDIRAIMGDTSALAGLRAEQFVDDSFGLPTVRDILTELEKPGRDPRPTFKTA 635 Query: 614 TDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 T +N I +G V V FGAFV +DGLVH+SQL+ V D+VK Sbjct: 636 TFADGINSITDLKSGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHDIVK 695 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688 GD V V++ + D R +I LSM+ Sbjct: 696 AGDVVRVRVTEIDVPRKRIALSMR 719 >gi|169829725|ref|YP_001699883.1| hypothetical protein Bsph_4294 [Lysinibacillus sphaericus C3-41] gi|168994213|gb|ACA41753.1| hypothetical transcription accessory protein (S1 RNA binding domain) [Lysinibacillus sphaericus C3-41] Length = 723 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L +R+ +VV GD TVWV+ +D +G Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDV-SKG 708 Query: 682 KIKLSM 687 +I L+M Sbjct: 709 RISLTM 714 >gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 720 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ + V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|167766699|ref|ZP_02438752.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1] gi|167711636|gb|EDS22215.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1] gi|291558359|emb|CBL37159.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [butyrate-producing bacterium SSC/2] Length = 632 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V ++ DFGAFV D L+H+SQ++ E + K SDV+ G + K++DF Sbjct: 550 KVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDF 609 Query: 678 -DDRGKIKLSMKVV 690 D KI LSMK + Sbjct: 610 KKDDKKISLSMKAL 623 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 + A +E + + + E +G V V DFGAF+ GA DGL+HIS++S RV Sbjct: 452 VAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 510 Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V GD V V + D KI LS+K ++N Sbjct: 511 VFNIGDKVTVLIKDIQGE-KIALSLKFPEEN 540 >gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485] Length = 400 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V DFG FV GA DGLVH+S++S RV S+V+K GD V V +L+ D +R Sbjct: 232 VREGVVSSVCDFGVFVDIGGA-DGLVHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHER 290 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 291 KRIALSIK 298 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I +G V ++ FGAFV +GL+H+S++ ER+ DV+ EG V +++ Sbjct: 313 QLGQIVEGTVTQLASFGAFVRIEDGVEGLIHVSEMGDERIQHPRDVLSEGQVVQARIIRI 372 Query: 678 DD-RGKIKLSMKV 689 D R ++ LS+++ Sbjct: 373 DPARKRMGLSLRL 385 >gi|92114773|ref|YP_574701.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043] gi|91797863|gb|ABE60002.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043] Length = 804 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + ++ D+ E + +G V V FGAFV +DGLVHIS LS + VVK Sbjct: 669 RDGVETLKDL-EPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSETFIEDPRQVVKA 727 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D +R +I LSM++ D Sbjct: 728 GDIVKVKVMEVDLERARIGLSMRMGD 753 >gi|15600394|ref|NP_253888.1| hypothetical protein PA5201 [Pseudomonas aeruginosa PAO1] gi|9951507|gb|AAG08586.1|AE004933_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|107104303|ref|ZP_01368221.1| hypothetical protein PaerPA_01005377 [Pseudomonas aeruginosa PACS2] gi|254243916|ref|ZP_04937238.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126197294|gb|EAZ61357.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|116511133|ref|YP_808349.1| transcriptional accessory protein [Lactococcus lactis subsp. cremoris SK11] gi|116106787|gb|ABJ71927.1| Transcriptional accessory protein [Lactococcus lactis subsp. cremoris SK11] Length = 713 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675 ++++ +G V V+DFGAF+ DGL H+S LS V SDVV G TVWVK L Sbjct: 636 QIDQQLEGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSL 695 Query: 676 DFDDRGKIKLSM 687 D RGKI L++ Sbjct: 696 DL-QRGKINLTL 706 >gi|313678983|ref|YP_004056722.1| SSU ribosomal protein s1p [Oceanithermus profundus DSM 14977] gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977] Length = 597 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+VV+V DFGAFV+ GA DGL+H S+LS R +VVK GD V K+L D +R + Sbjct: 265 EGKVVEVTDFGAFVNL-GAIDGLIHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKERER 323 Query: 683 IKLSMKVV 690 + LS+K + Sbjct: 324 VNLSIKAL 331 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676 EV + KG+VV + FGAFV +GL+HI+++S T+R S+V+KEG+ V +L Sbjct: 344 EVGQRIKGKVVGLTPFGAFVEIEPGLEGLIHITEMSWTKRPRHPSEVLKEGEEVEAVVLR 403 Query: 677 FD 678 D Sbjct: 404 ID 405 Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + KG++ V DFG FV +GLVHIS+L E + ++ K+G+ + V +L+ D Sbjct: 435 VVKGKITGVTDFGVFVEIEDGIEGLVHISELDYEHIDNPAEKFKKGEELEVVVLNID 491 >gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1] Length = 403 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V V DFGAFV GA DGLVH+S++S R+ +V+K GD V V +L D+ R Sbjct: 239 VREGIVTSVCDFGAFVDIGGA-DGLVHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNER 297 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 298 KRIALSLK 305 Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ +G V ++ FGAFV +GL+H+S++ RV DV++EGD V +++ Sbjct: 320 QIGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDVVQARIIRI 379 Query: 678 DD-RGKIKLSMK 688 D R +I LSM+ Sbjct: 380 DPARKRIGLSMR 391 >gi|254238102|ref|ZP_04931425.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126170033|gb|EAZ55544.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 779 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|330447155|ref|ZP_08310805.1| transcriptional accessory protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491346|dbj|GAA05302.1| transcriptional accessory protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 772 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G + V +FGAFV +DGLVHIS LS + V+ +VVK GD V VK+++ D R Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 713 KRIGMSMRLSDE 724 >gi|323970005|gb|EGB65280.1| tex protein containing protein [Escherichia coli TA007] Length = 815 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 713 KRIALTMRL 721 >gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596] gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596] Length = 248 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +DA VP +K PV A ++G++++G + L Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + I ED +D + T SG Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196 >gi|192360642|ref|YP_001983623.1| S1 RNA binding domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686807|gb|ACE84485.1| S1 RNA binding domain protein [Cellvibrio japonicus Ueda107] Length = 776 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 4/87 (4%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + ITD VP + I +G V V +FGAFV +DGLVHIS LS + D VK Sbjct: 643 QEGVEEITDLVPGM--ILEGTVTNVTNFGAFVDIGVHQDGLVHISALSHTFIKDPRDAVK 700 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691 G+ V VK+++ D R +I LSM++ D Sbjct: 701 AGEIVKVKVMEVDVPRKRIALSMRLDD 727 >gi|153871035|ref|ZP_02000305.1| RNA binding S1 domain protein [Beggiatoa sp. PS] gi|152072497|gb|EDN69693.1| RNA binding S1 domain protein [Beggiatoa sp. PS] Length = 836 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I +I D+ E + + +G V V +FGAFV DGLVHIS LS + V VVK Sbjct: 679 KEGIENIEDL-EADMVLEGVVTNVTNFGAFVDVGVHHDGLVHISALSRDYVKDPRAVVKA 737 Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687 GD V VK+L+ D R ++ L+M Sbjct: 738 GDVVKVKVLEIDLKRQRVALTM 759 >gi|145635345|ref|ZP_01791047.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] gi|145267351|gb|EDK07353.1| transcription elongation factor GreB [Haemophilus influenzae PittAA] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|299756328|ref|XP_001829254.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130] gi|298411627|gb|EAU92580.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130] Length = 1160 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672 P V KIY+G+V + DFGAFV G +G+VH+S + R +D++ G V V Sbjct: 198 PVVFKIYEGKVAGIKDFGAFVQLEGVAGRVEGMVHVSNIQAGARANSAADLLSRGQRVKV 257 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696 K++ G+I LSMK VDQ TG+ Sbjct: 258 KVMSVAG-GRIGLSMKDVDQVTGR 280 >gi|178847555|pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form I gi|178847556|pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form 2 Length = 785 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S+ D+ + + +G V V +FGAFV +DGLVHIS LS + V +VVK Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697 GD V VK+++ D R ++ LSM++ D Q G+P Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741 >gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 245 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R GR ++ +R I + GS L G T+ I ++ +E+ L + Sbjct: 8 RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASV----EEKVPGWLKDQGKG 63 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP ATG + A ++ G RL R++ V+ A ++I + Sbjct: 64 WVTAEYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCD 123 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 +T++DG + A++ G+ +AL DA P+ VA +++G+ + + ++ Sbjct: 124 VTQADGGTRCASITGAYVALADAVNWLIKNGSLEKSPLKGQVAALSVGIYEG----VPVA 179 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D DEDHL D V TD+G Sbjct: 180 DFDYDEDHLSDTDMNVVMTDAG 201 >gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32] gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32] Length = 499 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 210 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 269 VLDVDMDRERVSLSLKATQED 289 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ V VK++D D Sbjct: 300 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDID 359 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 360 LERRRISLSLKQANE 374 >gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4] gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4] Length = 497 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 210 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D DR ++ LS+K ++ Sbjct: 269 VLDVDMDRERVSLSLKATQED 289 Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ V VK++D D Sbjct: 300 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDID 359 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 360 LERRRISLSLKQANE 374 >gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243] gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243] Length = 717 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVH+S+++ V S+VV GD TVWV +D DRG+ Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGR 707 Query: 683 IKLSM 687 I LSM Sbjct: 708 ISLSM 712 >gi|289523052|ref|ZP_06439906.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503595|gb|EFD24759.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 511 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684 +VVK++DFGAFV +GL+HISQ+S + S V+K+GD V ++L+ D + +I+ Sbjct: 396 RVVKIVDFGAFVEIESGIEGLIHISQISRRHIDDVSKVLKKGDEVKARILEIDPNEKRIR 455 Query: 685 LSMKVVDQ 692 LS+K +++ Sbjct: 456 LSIKALEE 463 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 +KI+ G++ +DFGAFV +GL+HIS +S + +V+K+G + V++LD D Sbjct: 306 DKIH-GRITNTVDFGAFVEIKPGVEGLIHISDISWGHIDHPREVLKKGQDIEVQVLDIDL 364 Query: 679 DRGKIKLSMK 688 D+ +I L K Sbjct: 365 DQKRISLGYK 374 >gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139] gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139] gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1] gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2] gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3] gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4] gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1] gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2] gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 720 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ + V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171] Length = 248 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +DA VP +K PV A ++G++++G + L Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + I ED +D + T SG Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196 >gi|90581399|ref|ZP_01237194.1| hypothetical protein VAS14_21752 [Vibrio angustum S14] gi|90437376|gb|EAS62572.1| hypothetical protein VAS14_21752 [Vibrio angustum S14] Length = 774 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G + V +FGAFV +DGLVHIS LS + V+ +VVK GD V VK+++ D R Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 713 KRIGMSMRLSDE 724 >gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 1 [Canis familiaris] Length = 245 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538 E+ G + + I ++MD + + E+ + L+ A R + + +V Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRV 231 Query: 539 LSE 541 + + Sbjct: 232 VRQ 234 >gi|126651478|ref|ZP_01723682.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905] gi|126591731|gb|EAZ85827.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905] Length = 723 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L +R+ +VV GD TVWV+ +D +G Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDV-SKG 708 Query: 682 KIKLSM 687 +I L+M Sbjct: 709 RISLTM 714 >gi|94988103|ref|YP_596204.1| transcription accessory protein [Streptococcus pyogenes MGAS9429] gi|94991990|ref|YP_600089.1| transcription accessory protein [Streptococcus pyogenes MGAS2096] gi|94541611|gb|ABF31660.1| transcription accessory protein (S1 RNA binding domain) [Streptococcus pyogenes MGAS9429] gi|94545498|gb|ABF35545.1| transcription accessory protein [Streptococcus pyogenes MGAS2096] Length = 717 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710 >gi|212637532|ref|YP_002314057.1| RNA binding S1 [Shewanella piezotolerans WP3] gi|212559016|gb|ACJ31470.1| RNA binding S1 [Shewanella piezotolerans WP3] Length = 777 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ + + I +G V V +FGAFV +DGLVHIS ++ + + VVK Sbjct: 640 KEGVEQINDL-KPDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 698 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+++ D +R +I LSM++ D+ P Sbjct: 699 GDIVKVKVMEVDAERRRIGLSMRLTDKAGEAP 730 >gi|94993898|ref|YP_601996.1| transcription accessory protein [Streptococcus pyogenes MGAS10750] gi|94547406|gb|ABF37452.1| transcription accessory protein [Streptococcus pyogenes MGAS10750] Length = 717 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710 >gi|19745695|ref|NP_606831.1| hypothetical protein spyM18_0648 [Streptococcus pyogenes MGAS8232] gi|19747830|gb|AAL97330.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 710 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|16272511|ref|NP_438725.1| transcription accessory protein [Haemophilus influenzae Rd KW20] gi|2501167|sp|P71353|Y568_HAEIN RecName: Full=Uncharacterized protein HI_0568 gi|1573555|gb|AAC22226.1| transcription accessory protein (tex) [Haemophilus influenzae Rd KW20] Length = 762 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713 Query: 682 KIKLSMKV 689 +I L+M++ Sbjct: 714 RIALTMRL 721 >gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1] gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2] gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|301169284|emb|CBW28881.1| predicted transcriptional accessory protein [Haemophilus influenzae 10810] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|92116616|ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14] gi|91799510|gb|ABE61885.1| RNA binding S1 [Nitrobacter hamburgensis X14] Length = 778 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I ++ DV + I +G V V FGAFV +DGL+HIS +S V VVK Sbjct: 639 KEGIETLKDV-KPGMILEGAVTNVAAFGAFVDIGVHQDGLIHISAMSKSFVKDPRAVVKS 697 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 GD V VK+L+ D R +I L++++ D+ GK Sbjct: 698 GDVVKVKVLEVDVARKRIALTLRLDDELGGK 728 >gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens] Length = 328 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + D+ E N+ Y G++ + +GAFV DGLVHIS+LS V + VVKEGD V V Sbjct: 62 LADLVEGNE-YAGKITGLAAYGAFVDIGAQSDGLVHISELSASYVDDVASVVKEGDDVTV 120 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKP 697 ++L D GK +LS+ + + P Sbjct: 121 RILKI-DSGKKQLSLSMKPEGAEAP 144 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +A E +R D + + G V V+++GAFV+ DGLVHIS++S RV Sbjct: 156 KAGAEELRKYQDA-DPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAE 214 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 + GD V V+++D D D+ + L+M T P Sbjct: 215 LSVGDEVKVRIIDVDLDKATLGLAMNTYRDPTAPP 249 >gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] Length = 246 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 14/186 (7%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR S +R + A++G+ + GS+ +G+T+A+ V G E V Sbjct: 6 IISDQGYRIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATV-YGPHE----VRK 60 Query: 366 LSGTQRNDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 G ++D + ++ +TGE RR R+ V+ T FP + Sbjct: 61 GRGKIQHDRAVVNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIV-TELFPRS 119 Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481 + I +I ++DG + A V ++LA++DAG+P+ V G ++D L DIS Sbjct: 120 QIDIYVQILQADGGNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSP----LLDISY 175 Query: 482 DEDHLG 487 E+ G Sbjct: 176 VEESAG 181 >gi|319441361|ref|ZP_07990517.1| putative transcriptional accessory protein [Corynebacterium variabile DSM 44702] Length = 791 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ + +G V V FGAFV +DGLVH+S ++ RV +VV+ G Sbjct: 646 EGIEKISDLTP-GMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMAERRVNDPHEVVRTG 704 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V VK+++ D +R +I LS+++ D+ GKP Sbjct: 705 QVVKVKVMEVDVERQRIGLSLRLTDE-PGKP 734 >gi|94989984|ref|YP_598084.1| transcription accessory protein [Streptococcus pyogenes MGAS10270] gi|94543492|gb|ABF33540.1| transcription accessory protein [Streptococcus pyogenes MGAS10270] Length = 717 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710 >gi|325578217|ref|ZP_08148352.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392] gi|325159953|gb|EGC72082.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392] Length = 549 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQILENLAEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPN 352 >gi|301156123|emb|CBW15594.1| 30S ribosomal subunit protein S1 [Haemophilus parainfluenzae T3T1] Length = 549 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQILENLAEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPN 352 >gi|189425204|ref|YP_001952381.1| ribosomal protein S1 [Geobacter lovleyi SZ] gi|189421463|gb|ACD95861.1| ribosomal protein S1 [Geobacter lovleyi SZ] Length = 573 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G + ++ +L E E A ++ + E +I +G V + ++GAFV G DGL+H++ Sbjct: 179 GNIVLSRRALLEEERAESRKATLEKLSE-GQIMQGVVKNLTEYGAFVDLGGV-DGLLHVT 236 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +S RV K +DV+K G V VK+L FD ++GK+ + +K Sbjct: 237 DISWGRVGKPADVLKPGQEVNVKILKFDREKGKVSVGIK 275 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE ++ G+VV +MD+GAF+ +GLVH+S++S T+RV K +D++ GD V V +L Sbjct: 290 PEGTRV-SGKVVSLMDYGAFIELESGIEGLVHVSEMSWTKRVRKAADMLNVGDQVDVVVL 348 Query: 676 DFDDRG-KIKLSMKVVDQNTGKPI 698 D + KI L +K V+ N + I Sbjct: 349 GVDLQNRKISLGLKQVNDNPWQSI 372 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V DFG FV +GL+H+S+LS E+V D GD++ +L+ D R +I Sbjct: 471 GKVASTTDFGVFVEIEEGIEGLIHVSELSREKVPSAKDFAIVGDSIEAVVLNADSRERRI 530 Query: 684 KLSMK 688 LS+K Sbjct: 531 SLSVK 535 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDT 669 +SI + V +GQ+ + DFG F+ DGLVH+S +S T+RV DV +GD Sbjct: 370 QSIAERYPVGTKLEGQIKNMTDFGMFIGIEEGIDGLVHVSDISWTKRVKHPGDVYSKGDL 429 Query: 670 VWVKLLDFDDRG-KIKLSMK 688 V +L D + ++ L +K Sbjct: 430 VQAVVLKVDPQNERVSLGIK 449 >gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202] gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187] gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165] gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137] gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202] gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187] gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165] gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137] gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1] gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2] gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2] gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1] gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1] gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1] gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2] gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1] gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2] gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1] gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2] gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1] gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1] gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1] gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4] gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1] gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3] gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3] gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1] gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1] gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1] gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2] gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1] gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1] gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1] gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1] gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2] gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1] gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3] gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1] gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2] gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3] gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1] gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1] gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2] gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1] gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2] gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1] gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3] gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2] gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2] gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1] gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3] gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2] gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1] gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1] gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2] gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1] gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|309972281|gb|ADO95482.1| Probable transcription accessory protein Tex [Haemophilus influenzae R2846] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|253576861|ref|ZP_04854186.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843728|gb|EES71751.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 156 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKIGDMVTVKVINV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 DKDGKIGLSIK 74 >gi|157373314|ref|YP_001471914.1| RNA-binding S1 domain-containing protein [Shewanella sediminis HAW-EB3] gi|157315688|gb|ABV34786.1| RNA binding S1 domain protein [Shewanella sediminis HAW-EB3] Length = 804 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + + D+ +++ I +G V V +FGAFV +DGLVHIS L+ + V+ VVK Sbjct: 661 KEGVEEVKDL-KLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKA 719 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK++ D +R +I LSM++ ++ P Sbjct: 720 GDVVKVKVMQVDVERKRIGLSMRLDEKAADMP 751 >gi|329723961|gb|EGG60486.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU144] gi|329733042|gb|EGG69381.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU028] Length = 133 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484] gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484] Length = 255 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 23/204 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR +R I L+ GS L GDT+ + V++ E L G + Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSV----QESVPPFLKGKGQ 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G R R+ RA+ L T T I Sbjct: 57 GWITAEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + G+ +AL DA GV PI VA +++G+V D IL Sbjct: 117 DVLQADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQ----IL 172 Query: 477 SDISGDEDHLGHMDFKVAGTDSGI 500 D++ +ED +D V T SG+ Sbjct: 173 LDLNFEEDSRAKVDMNVVATGSGM 196 >gi|217963910|ref|YP_002349588.1| 30S ribosomal protein S1-like protein [Listeria monocytogenes HCC23] gi|217333180|gb|ACK38974.1| putative 30S ribosomal protein S1-like protein [Listeria monocytogenes HCC23] Length = 381 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 332 EADKRLSLSIK 342 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256 >gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2] gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1] gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3] gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium sp. P08] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1] Length = 498 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 286 RERVSLSLKATQED 299 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV D V VK++D Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368 Query: 678 D-DRGKIKLSMK 688 D DR +I LS+K Sbjct: 369 DLDRRRISLSLK 380 >gi|260581014|ref|ZP_05848837.1| transcription accessory protein [Haemophilus influenzae RdAW] gi|260092373|gb|EEW76313.1| transcription accessory protein [Haemophilus influenzae RdAW] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713 Query: 682 KIKLSMKV 689 +I L+M++ Sbjct: 714 RIALTMRL 721 >gi|254496032|ref|ZP_05108934.1| transcription accessory protein [Legionella drancourtii LLAP12] gi|254354743|gb|EET13376.1| transcription accessory protein [Legionella drancourtii LLAP12] Length = 780 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%) Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V ++N +++G +++ V +FGAFV +DGLVHIS ++ + + VVK GD V Sbjct: 641 VEDINHLHEGMILEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNKFITDPRTVVKAGDIV 700 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 VK+++ D +R +I LSMK +D + P+V Sbjct: 701 TVKVVEVDKERKRIGLSMK-LDDSASAPLV 729 >gi|254163335|ref|YP_003046443.1| putative transcriptional accessory protein [Escherichia coli B str. REL606] gi|253975236|gb|ACT40907.1| predicted transcriptional accessory protein [Escherichia coli B str. REL606] gi|253979392|gb|ACT45062.1| predicted transcriptional accessory protein [Escherichia coli BL21(DE3)] Length = 772 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 711 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 712 KRIALTMRL 720 >gi|223044427|ref|ZP_03614460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|314932730|ref|ZP_07840100.1| general stress protein 13 [Staphylococcus caprae C87] gi|222442216|gb|EEE48328.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|313654560|gb|EFS18312.1| general stress protein 13 [Staphylococcus caprae C87] Length = 134 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|145633476|ref|ZP_01789205.1| transcription elongation factor GreB [Haemophilus influenzae 3655] gi|144985845|gb|EDJ92453.1| transcription elongation factor GreB [Haemophilus influenzae 3655] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|194435878|ref|ZP_03067981.1| putative transcriptional accessory protein [Escherichia coli 101-1] gi|300931061|ref|ZP_07146416.1| S1 RNA binding domain protein [Escherichia coli MS 187-1] gi|194425421|gb|EDX41405.1| putative transcriptional accessory protein [Escherichia coli 101-1] gi|242378930|emb|CAQ33728.1| predicted transcriptional accessory protein [Escherichia coli BL21(DE3)] gi|300461105|gb|EFK24598.1| S1 RNA binding domain protein [Escherichia coli MS 187-1] gi|323959593|gb|EGB55245.1| tex protein containing protein [Escherichia coli H489] Length = 773 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 713 KRIALTMRL 721 >gi|258615293|ref|ZP_05713063.1| S1 RNA-binding domain-containing protein [Enterococcus faecium DO] Length = 203 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 134 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 192 Query: 683 IKLSM 687 I L+M Sbjct: 193 ISLTM 197 >gi|312863902|ref|ZP_07724140.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396] gi|311101438|gb|EFQ59643.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396] Length = 400 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V ++ FGAF+ G DGLVH+++LS ER VV GD V VK+L Sbjct: 192 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|262370700|ref|ZP_06064025.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314500|gb|EEY95542.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 788 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 6/80 (7%) Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 D+ EV ++ +G V V +FGAFV +DGLVHIS+L+ E VA VVK G Sbjct: 637 DITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQI 696 Query: 670 VWVKLLDFD-DRGKIKLSMK 688 V V++L D +R ++ LSM+ Sbjct: 697 VQVRVLTVDAERNRVNLSMR 716 >gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 720 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ + V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|168070622|ref|XP_001786877.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660263|gb|EDQ48309.1| predicted protein [Physcomitrella patens subsp. patens] Length = 398 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQLS+ V DVV GD V V +L+ D +G+ Sbjct: 327 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSSGYVKHPMDVVSVGDNVTVWVLNVDLKKGR 386 Query: 683 IKLSMK 688 + L+M+ Sbjct: 387 VGLTMR 392 >gi|56459392|ref|YP_154673.1| transcriptional accessory protein [Idiomarina loihiensis L2TR] gi|56178402|gb|AAV81124.1| Transcriptional accessory protein [Idiomarina loihiensis L2TR] Length = 776 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ + + +G V V +FGAF+ +DGLVHIS L+ + V+ +VVK Sbjct: 639 KEGVEKVSDL-KPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKA 697 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+L+ D +R +I L+M++ D+ Sbjct: 698 GDIVKVKVLEVDIERKRIGLTMRLSDE 724 >gi|332163332|ref|YP_004299909.1| putative transcription accessory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667562|gb|ADZ44206.1| putative transcription accessory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862987|emb|CBX73120.1| protein yhgF [Yersinia enterocolitica W22703] Length = 794 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ +Q Sbjct: 712 KRIALSMRLDEQ 723 >gi|323494582|ref|ZP_08099686.1| transcription accessory protein [Vibrio brasiliensis LMG 20546] gi|323311185|gb|EGA64345.1| transcription accessory protein [Vibrio brasiliensis LMG 20546] Length = 772 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ++D+ E + +G V V +FGAFV +DGLVHIS L+ V+ +VVK GD Sbjct: 642 VNEVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDVKRKRIGLSMRLNDE 724 >gi|259047480|ref|ZP_05737881.1| histidine triad domain-containing protein [Granulicatella adiacens ATCC 49175] gi|259035671|gb|EEW36926.1| histidine triad domain-containing protein [Granulicatella adiacens ATCC 49175] Length = 751 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L V SDVV GD TVWV LD +G Sbjct: 679 EGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVTELDL-KKG 737 Query: 682 KIKLSM 687 ++ LSM Sbjct: 738 RVGLSM 743 >gi|229087412|ref|ZP_04219546.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44] gi|228695834|gb|EEL48685.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44] Length = 131 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I KG+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ Sbjct: 27 IVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 86 Query: 682 -KIKLSMKVVDQNTGKPIV 699 K+ LS+K + G+ IV Sbjct: 87 RKMSLSLKAAKRKQGRIIV 105 >gi|239623627|ref|ZP_04666658.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales bacterium 1_7_47_FAA] gi|239521658|gb|EEQ61524.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales bacterium 1_7_47FAA] Length = 665 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 43/193 (22%) Query: 528 RLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 R I+ + ++L + QL E R++I ++NV G ++ GA Sbjct: 461 RRRIIGDRKQLLVAQKAQLKEELFSRIQIGDAVEGTVKNVTDFGA-----FIDLGGA--- 512 Query: 587 IDDDGTVKIASSSLAEIEAAREMIRS-------ITDV-----------PEVN-------- 620 DG + I+ S +E +++ ++ I D+ PE N Sbjct: 513 ---DGLLHISEMSWGRVENPKKVFKAGDQVRVLIKDIQGEKIALSLKFPEANPWVQAAEK 569 Query: 621 ----KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 + G+V ++ DFGAFV D L+H+SQ+S E V K SDV++ G+ + +++D Sbjct: 570 YAVGNVVVGRVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLRIGEEIEARVVD 629 Query: 677 FDDRG-KIKLSMK 688 F++ KI LS+K Sbjct: 630 FNEADHKISLSIK 642 >gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] Length = 255 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 41/248 (16%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R + L GS L GDT+ I ++ E L G + Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASV----TESVPPFLKGKGQ 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G S R R+ RA+ + T TL + Sbjct: 57 GWITAEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ DA VPI VA +++G+V L Sbjct: 117 DVIQADGGTRTASITGAFVAVADALIKLYEDGIIQSVPIKDFVAAVSVGIVNGKP----L 172 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQ----------------MDMKIGGISENI-MV 518 D++ +ED + +D V GT G + +Q +D+ + GISE + + Sbjct: 173 LDLNFEEDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQ 232 Query: 519 MALQQAKR 526 AL +A R Sbjct: 233 RALYEANR 240 >gi|89892399|gb|ABD78984.1| HI0568-like protein [Haemophilus influenzae] Length = 770 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713 Query: 682 KIKLSMKV 689 +I L+M++ Sbjct: 714 RIALTMRL 721 >gi|78357054|ref|YP_388503.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219459|gb|ABB38808.1| SSU ribosomal protein S1P [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 482 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670 ++ D + +G+VV+ FGAFV +GLVHIS++S T R+ K DVV GDTV Sbjct: 279 TVADRLAAGTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAEDVVIPGDTV 338 Query: 671 WVKLLDFDD-RGKIKLSMK 688 VK+ D D + +I LS++ Sbjct: 339 SVKIKDIDSAKRRISLSLR 357 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK---I 683 + ++ +FGAF +GL+HIS+L RV + V +GDT+ K+L + K I Sbjct: 206 ITRLTNFGAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVLKIESTAKGLRI 265 Query: 684 KLSMKVV 690 LS K V Sbjct: 266 ALSAKQV 272 >gi|318607824|emb|CBY29322.1| transcription accessory protein (S1 RNA-binding domain) [Yersinia enterocolitica subsp. palearctica Y11] Length = 794 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ +Q Sbjct: 712 KRIALSMRLDEQ 723 >gi|304405799|ref|ZP_07387457.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9] gi|304345042|gb|EFM10878.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9] Length = 162 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V D +K D V VK+++ Sbjct: 4 EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKLEDVVKVKVINV 63 Query: 678 DDRGKIKLSMK-VVDQNTGKP 697 D GKI LS+K +D+ G+P Sbjct: 64 DKDGKIGLSIKQAIDRPEGQP 84 >gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] Length = 248 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R I + GS L GDT+ I ++ +++ L G Sbjct: 1 MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASI----EDRVPPFLKGKGE 56 Query: 372 NDFMMHYNFLPCATGEVSRM-----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 YN LP AT +V ++ G R + R+ RA+ V+ A T+ + Sbjct: 57 GWITCEYNMLPRAT-QVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVD 115 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL+DA PI V+ I++G+V + + Sbjct: 116 CDVIQADGGTRTASISGAFVALVDAVNKLHKRTPFTVYPIRDFVSAISVGIVNN----VR 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ ED +D + TDSG Sbjct: 172 MLDLCYLEDSRAQVDMNIVMTDSG 195 >gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix jacchus] Length = 245 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509 E+ G + + I ++MD ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205 >gi|289643005|ref|ZP_06475138.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] gi|289507227|gb|EFD28193.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] Length = 850 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+S +S V+ +VVK GD V VK+LD D R Sbjct: 672 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVSDPREVVKPGDIVRVKVLDVDIAR 731 Query: 681 GKIKLSMKVVDQNT 694 +I L++++ D N Sbjct: 732 KRISLTLRLDDDNN 745 >gi|167622183|ref|YP_001672477.1| RNA-binding S1 domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352205|gb|ABZ74818.1| RNA binding S1 domain protein [Shewanella halifaxensis HAW-EB4] Length = 785 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ +++ I +G V V +FGAFV +DGLVHIS ++ + + VVK Sbjct: 640 KEGVEEIKDL-QLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 698 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D +R +I LSM++ D+ Sbjct: 699 GDIVKVKVMEVDAERRRIALSMRLDDK 725 >gi|330718559|ref|ZP_08313159.1| transcriptional accessory protein [Leuconostoc fallax KCTC 3537] Length = 727 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L+ +RV S+VV GD VW++ +D + R Sbjct: 655 QGTVRNVVDFGAFVDLGVKQDGLVHISKLAQKRVTHPSEVVAVGDIVDVWIESVD-EKRH 713 Query: 682 KIKLSM 687 +I LSM Sbjct: 714 RIGLSM 719 >gi|322830973|ref|YP_004211000.1| Tex-like protein [Rahnella sp. Y9602] gi|321166174|gb|ADW71873.1| Tex-like protein [Rahnella sp. Y9602] Length = 776 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ +Q P Sbjct: 712 KRIALTMRLDEQPGEAP 728 >gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium hathewayi DSM 13479] gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium hathewayi DSM 13479] Length = 367 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682 G+V ++ DFGAFV D L+H+SQ+S + V K SDV+ G + K++DF DDR K Sbjct: 282 GRVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDR-K 340 Query: 683 IKLSMKVV 690 I LSMK + Sbjct: 341 ISLSMKAL 348 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G + V DFGAF+ GA DGL+HIS++S RV V K G+ + V + D + Sbjct: 196 VVEGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKVFKAGEKMRVLIKDING-D 253 Query: 682 KIKLSMKVVDQNTGK 696 KI LS+K + N K Sbjct: 254 KIALSLKFPETNPWK 268 >gi|317049904|ref|YP_004117552.1| Tex-like protein [Pantoea sp. At-9b] gi|316951521|gb|ADU70996.1| Tex-like protein [Pantoea sp. At-9b] Length = 777 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|171058545|ref|YP_001790894.1| RNA-binding S1 domain-containing protein [Leptothrix cholodnii SP-6] gi|170775990|gb|ACB34129.1| RNA binding S1 domain protein [Leptothrix cholodnii SP-6] Length = 827 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E + +G V V FGAF+ +DGLVH+SQLS + V +VVK GD Sbjct: 696 VEDIKDLSE-GMVLEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDI 754 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V V++L+ D R +I L+MK+ Sbjct: 755 VKVRVLEVDLARKRISLTMKL 775 >gi|123444176|ref|YP_001008146.1| putative transcription accessory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091137|emb|CAL14020.1| putative transcription accessory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 794 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ +Q Sbjct: 712 KRIALSMRLDEQ 723 >gi|15672267|ref|NP_266441.1| hypothetical protein L84502 [Lactococcus lactis subsp. lactis Il1403] gi|12723148|gb|AAK04383.1|AE006266_2 hypothetical protein L84502 [Lactococcus lactis subsp. lactis Il1403] gi|326405864|gb|ADZ62935.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis CV56] Length = 712 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAF+ DGL H+S LS V SDVV G TVWVK LD RG Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700 Query: 682 KIKLSM 687 KI L++ Sbjct: 701 KINLTL 706 >gi|313894879|ref|ZP_07828439.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976560|gb|EFR42015.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 148 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 + +FGAF+ + GL+HIS+++ V D +KE DTV VK+L DDRGKI LS+K Sbjct: 16 ITNFGAFIELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSIKA 75 Query: 690 V 690 + Sbjct: 76 L 76 >gi|242371662|ref|ZP_04817236.1| S1 family RNA-binding protein [Staphylococcus epidermidis M23864:W1] gi|242350611|gb|EES42212.1| S1 family RNA-binding protein [Staphylococcus epidermidis M23864:W1] Length = 134 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|228478187|ref|ZP_04062795.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126] gi|228249866|gb|EEK09136.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126] Length = 400 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V ++ FGAF+ G DGLVH+++LS ER VV GD V VK+L Sbjct: 192 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|148825153|ref|YP_001289906.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] gi|148715313|gb|ABQ97523.1| transcription elongation factor GreB [Haemophilus influenzae PittEE] Length = 770 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713 Query: 682 KIKLSMKV 689 +I L+M++ Sbjct: 714 RIALTMRL 721 >gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13] gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 720 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ + V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|88703318|ref|ZP_01101034.1| S1 RNA binding domain protein [Congregibacter litoralis KT71] gi|88702032|gb|EAQ99135.1| S1 RNA binding domain protein [Congregibacter litoralis KT71] Length = 792 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ITD+ + + + +G V V FGAFV +DGLVHIS ++ + V DV K GD Sbjct: 642 VEKITDL-KPDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMAEKFVKDPRDVAKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691 V VK++ D +R ++ LSM++ D Sbjct: 701 VTVKVMSIDVERKRVGLSMRLSD 723 >gi|313607931|gb|EFR84071.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL F2-208] Length = 443 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 334 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 393 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 394 EADKRLSLSIK 404 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 220 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 277 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 278 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 318 >gi|242241593|ref|ZP_04796038.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144] gi|242234974|gb|EES37285.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144] gi|319399665|gb|EFV87919.1| general stress protein 13 [Staphylococcus epidermidis FRI909] Length = 133 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|239997047|ref|ZP_04717571.1| Transcriptional accessory protein [Alteromonas macleodii ATCC 27126] Length = 782 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E + +I D+ + I +G V V +FGAFV +DGLVHIS L+ + ++ +VV Sbjct: 634 AFKEGVETINDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPREVV 692 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 K GD V VK+L+ D R +I +M++ D Sbjct: 693 KAGDIVKVKVLEVDVPRKRISFTMRLDD 720 >gi|226323894|ref|ZP_03799412.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758] gi|225207443|gb|EEG89797.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758] Length = 253 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 12/109 (11%) Query: 593 VKIASSSLAE---IEAAREMIRSITDVPEVNK--------IYKGQVVKVMDFGAFVHFCG 641 V++ ++ AE I +ARE++R + K + KG V + +GAFV Sbjct: 85 VRVIEANQAEGRLILSAREILREQKKAEDAKKLASVQVGSVVKGTVESLQSYGAFVRLEN 144 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690 GLVHISQ+ST+R+ V+ GD V VK++ D GKI LS+K + Sbjct: 145 GLSGLVHISQISTQRIKSADQVLHVGDEVDVKVIGIKD-GKISLSIKAL 192 >gi|225568091|ref|ZP_03777116.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM 15053] gi|225163044|gb|EEG75663.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM 15053] Length = 376 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D ++ KI Sbjct: 282 GRVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQEITAKIVDLNEAEKKI 341 Query: 684 KLSMKVVDQNT 694 LSMK ++ +T Sbjct: 342 SLSMKALEPDT 352 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 6/93 (6%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A E +E+ + ++ +G V V DFGAF+ G DGL+HIS++S RV Sbjct: 179 ARAEKQKELFEKL----QIGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENP 233 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 V + GD V V + D +D KI LS+K + N Sbjct: 234 KKVFQVGDIVKVLIKDINDT-KIALSLKFPETN 265 >gi|172058299|ref|YP_001814759.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990820|gb|ACB61742.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15] Length = 130 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +++ G+V + +FGAFV GLVHIS++S + V +D VK GD V VK+LD Sbjct: 5 EKDQVVTGKVTGIQNFGAFVALDEQTQGLVHISEISHDYVKDINDYVKVGDEVTVKVLDI 64 Query: 678 DDRG-KIKLSMKVVDQ 692 D+ K+KLS+K + Sbjct: 65 DEANKKMKLSIKATQE 80 >gi|125623169|ref|YP_001031652.1| transcription accessory protein TEX [Lactococcus lactis subsp. cremoris MG1363] gi|124491977|emb|CAL96904.1| transcription accessory protein TEX [Lactococcus lactis subsp. cremoris MG1363] gi|300069916|gb|ADJ59316.1| transcription accessory protein TEX [Lactococcus lactis subsp. cremoris NZ9000] Length = 713 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAF+ DGL H+S LS V SDVV G TVWVK LD RG Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700 Query: 682 KIKLSM 687 KI L++ Sbjct: 701 KINLTL 706 >gi|46446608|ref|YP_007973.1| hypothetical protein pc0974 [Candidatus Protochlamydia amoebophila UWE25] gi|46400249|emb|CAF23698.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 754 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 5/95 (5%) Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 RE I SI D+ P ++ +G V V FGAF+ +DGL+H+S+LS V+ +DVVK Sbjct: 635 REDILSIQDLKPGLH--LEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVK 692 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV-VDQNTGKPI 698 GD + V++L D +R +I L+ +V +++T +PI Sbjct: 693 AGDKLKVEVLTIDVERKRISLTARVGQNRSTKEPI 727 >gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1] Length = 408 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 + +D + I S +A E + + + +I G+V + DFGAFV+ GA D Sbjct: 191 IEVDRERRRLILSERVATPETRETLKERVIETLAEGEIRTGRVTSLADFGAFVNISGA-D 249 Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GLVH+S++S +R+ S+V++ G V VK++ D ++ +I LS++ Q G P Sbjct: 250 GLVHLSEISWDRIKHPSEVLQVGQEVKVKVISVDREKRRIGLSIR---QTQGDP 300 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G + ++ FGAF +GL+HIS++S +R+ +V+KEGD V ++++ Sbjct: 309 QVGMLVEGVITRLTKFGAFAKLDEDIEGLIHISEISEKRIEHPKEVLKEGDKVTLRIVKI 368 Query: 678 D-DRGKIKLSMKVVD 691 D + +I LS++ VD Sbjct: 369 DPENHRIGLSLRRVD 383 >gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 401 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FG+FV G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 255 NDRHRISLSIK 265 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + +FGAFV GLVH+S++S + V K SDV+ G V VK+L+ D + Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSK 343 Query: 681 GKIKLSMKVVD 691 +I LS+K D Sbjct: 344 RRISLSIKQAD 354 >gi|257869273|ref|ZP_05648926.1| RNA binding protein S1 [Enterococcus gallinarum EG2] gi|257803437|gb|EEV32259.1| RNA binding protein S1 [Enterococcus gallinarum EG2] Length = 727 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVH+S+LS V DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHPKDVVAVGDIVTVWIEQVD-TTKGR 715 Query: 683 IKLSMKVVDQNTGK 696 I L+M VD GK Sbjct: 716 ISLTM--VDPTHGK 727 >gi|283787959|ref|YP_003367824.1| transcription accessory protein [Citrobacter rodentium ICC168] gi|282951413|emb|CBG91112.1| putative transcription accessory protein [Citrobacter rodentium ICC168] Length = 772 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 401 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FG+FV G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 255 NDRHRISLSIK 265 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + +FGAFV GLVH+S++S + V K SDV+ G V VK+L+ D + Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSK 343 Query: 681 GKIKLSMKVVD 691 +I LS+K D Sbjct: 344 RRISLSIKQAD 354 >gi|239828183|ref|YP_002950807.1| general stress protein 13 [Geobacillus sp. WCH70] gi|239808476|gb|ACS25541.1| RNA binding S1 domain protein [Geobacillus sp. WCH70] Length = 121 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I KG+V + +G FV GLVHIS++S E V D V GD + VK+L Sbjct: 5 EVGSIVKGKVTGIQPYGVFVELDEETQGLVHISEISHEFVKNIKDYVNVGDEIIVKVLSI 64 Query: 678 DDRGK-IKLSMKVVDQNTGK 696 D + K + LSM+ V++ GK Sbjct: 65 DPQTKRVSLSMRAVEERQGK 84 >gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 401 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+V ++ +FG+FV G DGLVHIS++S + V K SDV+K G V VK++ D Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 255 NDRHRISLSIK 265 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + +FGAFV GLVH+S+++ + V K SDV+ G V VK+L+ D + Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSK 343 Query: 681 GKIKLSMKVVD 691 +I LS+K VD Sbjct: 344 RRISLSIKQVD 354 >gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens] gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta] gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes] gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus leucogenys] gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41; AltName: Full=p12A gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens] gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens] gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens] gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens] gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct] gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct] Length = 245 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509 E+ G + + I ++MD ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205 >gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R I L GS L G+T+ I ++ + + + G R Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASV----ENKVPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +DA VP +K PV A ++G++++G + L Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDLLAATSVGVLEEGGTVLDL 176 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + I ED +D + T SG Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196 >gi|157963826|ref|YP_001503860.1| RNA-binding S1 domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848826|gb|ABV89325.1| RNA binding S1 domain protein [Shewanella pealeana ATCC 700345] Length = 803 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ +++ I +G V V +FGAFV +DGLVHIS ++ + + VVK Sbjct: 661 KEGVEEIKDL-KLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 719 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V VK+++ D +R +I LSM++ D+ P Sbjct: 720 GDIVKVKVMEVDAERRRIGLSMRLDDKAGDAP 751 >gi|332703922|ref|ZP_08424010.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554071|gb|EGJ51115.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 489 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +G +KI S SL + EA + ++ D + +G+V+++ DFGAFV +GLVH+ Sbjct: 264 EGRLKI-SLSLKQTEA--DPWTTLGDRFQAGDTVQGKVIRLADFGAFVEIAPGIEGLVHV 320 Query: 650 SQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S++S T R++K SDVV G + VK+ D D +I LS++ Sbjct: 321 SEMSYTRRISKPSDVVNPGQEISVKIKDVDLANRRISLSLR 361 Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---- 677 I +G V K+M +GAFV +G+ HIS+LS RV S V+ G V K+L Sbjct: 203 IIEGTVSKLMPYGAFVELMPGLEGMAHISELSWSRVDDPSAAVQPGQRVKAKVLAVEPGK 262 Query: 678 -DDRGKIKLSMK 688 + R KI LS+K Sbjct: 263 KEGRLKISLSLK 274 >gi|254555611|ref|YP_003062028.1| hypothetical protein JDM1_0442 [Lactobacillus plantarum JDM1] gi|300768961|ref|ZP_07078852.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179641|ref|YP_003923769.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044538|gb|ACT61331.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300493482|gb|EFK28659.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045132|gb|ADN97675.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 179 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV+ + GLVHIS++S V DV+ GD V VK+L Sbjct: 4 EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63 Query: 678 DDRGKIKLSM-KVVDQNTGK 696 D GKI LS+ K VD+ G+ Sbjct: 64 GDDGKIGLSIRKAVDKPQGE 83 >gi|28377428|ref|NP_784320.1| hypothetical protein lp_0543 [Lactobacillus plantarum WCFS1] gi|28270260|emb|CAD63161.1| unknown [Lactobacillus plantarum WCFS1] Length = 179 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV+ + GLVHIS++S V DV+ GD V VK+L Sbjct: 4 EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63 Query: 678 DDRGKIKLSM-KVVDQNTGK 696 D GKI LS+ K VD+ G+ Sbjct: 64 GDDGKIGLSIRKAVDKPQGE 83 >gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110] gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110] Length = 791 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAF+ +DGLVH+SQLS + V +VVK GD V VK+++ D R Sbjct: 673 ILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVAR 732 Query: 681 GKIKLSMKV 689 +I LSMK+ Sbjct: 733 KRIGLSMKL 741 >gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032] gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032] Length = 486 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV GD V V++L+ D D Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLEVDLD 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ V VK++D D Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Ailuropoda melanoleuca] Length = 245 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 66 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509 E+ G + + I ++MD ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205 >gi|222151971|ref|YP_002561131.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402] gi|222121100|dbj|BAH18435.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402] Length = 726 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDRGKI 683 G V V+DFGAFV +DGLVHIS+LS V +DVV GD V V + D D+GK+ Sbjct: 657 GTVRNVVDFGAFVDIGVKQDGLVHISKLSDRFVKHPTDVVSVGDIVEVWIEDIMHDKGKV 716 Query: 684 KLSMKVVD 691 L+M VD Sbjct: 717 ALTMINVD 724 >gi|84386346|ref|ZP_00989374.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01] gi|84378770|gb|EAP95625.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01] Length = 776 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + S++D+ E I +G V V +FGAFV +DGLVHIS L+ V+ +VVK G+ Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPHEVVKTGEI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724 >gi|56807869|ref|ZP_00365704.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes M49 591] Length = 139 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 52 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 110 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 111 GDLVTVWVSKIDL-DRHKVNLSL 132 >gi|332981388|ref|YP_004462829.1| RNA binding S1 domain-containing protein [Mahella australiensis 50-1 BON] gi|332699066|gb|AEE96007.1| RNA binding S1 domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 42/75 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I G V + FGAF+ GLVHIS+++ VA D +KE D V VK+L Sbjct: 4 QVGNIVDGTVSGITKFGAFIKLPDGSTGLVHISEIADFYVADIKDQLKENDRVRVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQ 692 D GKI+LS+K Q Sbjct: 64 GDDGKIRLSIKKAKQ 78 >gi|315303890|ref|ZP_07874364.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596] gi|313627740|gb|EFR96399.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596] Length = 381 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S + + +V+ EG+T+ VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGETIEVKVLEVN 331 Query: 679 DRGKIKLSMKVVD 691 + K +LS+ + D Sbjct: 332 ETDK-RLSLSIKD 343 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + + ++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVENEKASQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A +V++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYQHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256 >gi|281490827|ref|YP_003352807.1| transcription accessory protein (S1 RNA binding domain) [Lactococcus lactis subsp. lactis KF147] gi|281374585|gb|ADA64105.1| Transcription accessory protein (S1 RNA binding domain) [Lactococcus lactis subsp. lactis KF147] Length = 712 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAF+ DGL H+S LS V SDVV G TVWVK LD RG Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700 Query: 682 KIKLSM 687 KI L++ Sbjct: 701 KINLTL 706 >gi|145631752|ref|ZP_01787513.1| transcription elongation factor GreB [Haemophilus influenzae R3021] gi|144982613|gb|EDJ90159.1| transcription elongation factor GreB [Haemophilus influenzae R3021] Length = 770 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713 Query: 682 KIKLSMKV 689 +I L+M++ Sbjct: 714 RIALTMRL 721 >gi|145628950|ref|ZP_01784750.1| predicted transcriptional accessory protein [Haemophilus influenzae 22.1-21] gi|144979420|gb|EDJ89106.1| predicted transcriptional accessory protein [Haemophilus influenzae 22.1-21] Length = 648 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 449 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 503 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 504 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 562 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 563 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 599 >gi|27382391|ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium japonicum USDA 110] gi|27355562|dbj|BAC52545.1| bll7280 [Bradyrhizobium japonicum USDA 110] Length = 786 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS +S + +VVK GD V VK+LDF+ R Sbjct: 661 ILEGTVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKPGDIVKVKVLDFEVAR 720 Query: 681 GKIKLSMKVVDQ 692 +I L++++ D+ Sbjct: 721 KRISLTLRLDDE 732 >gi|323702560|ref|ZP_08114223.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574] gi|323532534|gb|EGB22410.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574] Length = 713 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V V+DFGAFV DGLVH S+LS DVV GD V V++L D +R Sbjct: 644 VLKGTVRNVVDFGAFVDIGLKNDGLVHRSELSDRPFRHPLDVVAVGDIVDVRVLSVDLER 703 Query: 681 GKIKLSMKV 689 G++ LSMK+ Sbjct: 704 GRVALSMKL 712 >gi|169334397|ref|ZP_02861590.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM 17244] gi|169259114|gb|EDS73080.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM 17244] Length = 666 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 6/101 (5%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+ VK++ L + E +E I + + V + K + +FGAF +GL+H Sbjct: 535 DNYKVKLSVKDLTK-EPWQEFIENYS----VGQTVKATIKNTTNFGAFAEIIPDVEGLIH 589 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQLS +RV D VK GD V VK++D + D+ K+ LS+K Sbjct: 590 ISQLSHDRVNNVEDAVKTGDEVNVKIIDINKDKRKVSLSIK 630 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E+ + E+ K + + + +FG F+ G DG +HIS ++ +RV +D+ K Sbjct: 463 KELKEAAIAALEIGKEVEAPIKNITNFGMFIDLNGV-DGFIHISDIAWKRVGNINDLYKV 521 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD+V + + D D K+KLS+K Sbjct: 522 GDSVKAIVTELDKDNYKVKLSVK 544 >gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 720 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124] Length = 720 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|322517175|ref|ZP_08070058.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124] gi|322124234|gb|EFX95750.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124] Length = 430 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V ++ FGAF+ G DGLVH+++LS ER VV GD V VK+L Sbjct: 222 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 280 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 281 DEEAGRVSLSLK 292 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 311 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 370 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 371 ERVSLSIKALEE 382 >gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239] gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239] Length = 720 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|154684978|ref|YP_001420139.1| YdcI [Bacillus amyloliquefaciens FZB42] gi|154350829|gb|ABS72908.1| YdcI [Bacillus amyloliquefaciens FZB42] Length = 719 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV+ +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|308188423|ref|YP_003932554.1| RNA binding protein [Pantoea vagans C9-1] gi|308058933|gb|ADO11105.1| putative RNA binding protein [Pantoea vagans C9-1] Length = 775 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 776 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G + V +FGAFV +DGL+HIS LS + V+ +VVK GD V VK+++ D R Sbjct: 653 ILEGVITNVTNFGAFVDVGVHQDGLIHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 713 KRIGMSMRLNDE 724 >gi|229846658|ref|ZP_04466766.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] gi|229810751|gb|EEP46469.1| transcription elongation factor GreB [Haemophilus influenzae 7P49H1] Length = 770 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNSG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V VK+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721 >gi|238898793|ref|YP_002924475.1| transcriptional accessory protein, RNA binding S1 domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466553|gb|ACQ68327.1| transcriptional accessory protein, RNA binding S1 domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 768 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 9/92 (9%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 EIE +++I + I +G V + FGAF+ +DGLVHIS ++ + V Sbjct: 634 EIETLKDLIPGM--------ILQGSVTNITHFGAFIDIGVHQDGLVHISSMANQFVTDPH 685 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 ++K GD V VK+L D +R +I LSM++ +Q Sbjct: 686 QLIKTGDIVQVKVLSIDMERKRIALSMRLDEQ 717 >gi|52078558|ref|YP_077349.1| hypothetical protein BL00507 [Bacillus licheniformis ATCC 14580] gi|52783920|ref|YP_089749.1| hypothetical protein BLi00076 [Bacillus licheniformis ATCC 14580] gi|319648587|ref|ZP_08002801.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2] gi|52001769|gb|AAU21711.1| putative Nucleic acid-binding OB-fold protein,contains S1 domain [Bacillus licheniformis ATCC 14580] gi|52346422|gb|AAU39056.1| YabR [Bacillus licheniformis ATCC 14580] gi|317389354|gb|EFV70167.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2] Length = 132 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|50546573|ref|XP_500756.1| YALI0B11352p [Yarrowia lipolytica] gi|49646622|emb|CAG83003.1| YALI0B11352p [Yarrowia lipolytica] Length = 1111 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 4/83 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P +NK+YKG+V + FGAFV G + DGLVH+S L+ RV SDVV GD V+VK Sbjct: 161 PIINKVYKGRVKNLTSFGAFVTLSGLKNKTDGLVHVSVLAANRVDHPSDVVSVGDVVYVK 220 Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696 + D R KI LS+ VDQ TG+ Sbjct: 221 VCKIDGR-KIGLSLNDVDQQTGQ 242 >gi|260584479|ref|ZP_05852226.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633] gi|260157997|gb|EEW93066.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633] Length = 163 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V + +FGAFV + GLVHIS++S + DV+ GD V VK+++ Sbjct: 4 EVGNILPGKVTGITNFGAFVDLGNRKTGLVHISEVSNSYIKDIKDVLTVGDEVQVKVMEI 63 Query: 678 DDRGKIKLSMK 688 GK+ LS++ Sbjct: 64 SGDGKVSLSIR 74 >gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3] Length = 795 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%) Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E +AAR E + I D+ E + +G V V FGAFV +DGL+HIS LS V Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697 DVVK GD V VK+L+ D R +I L+ ++ D Q T +P Sbjct: 700 PRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741 >gi|190574863|ref|YP_001972708.1| putative transcription accessory protein [Stenotrophomonas maltophilia K279a] gi|190012785|emb|CAQ46414.1| putative transcription accessory protein [Stenotrophomonas maltophilia K279a] Length = 795 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%) Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E +AAR E + I D+ E + +G V V FGAFV +DGL+HIS LS V Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697 DVVK GD V VK+L+ D R +I L+ ++ D Q T +P Sbjct: 700 PRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741 >gi|304397826|ref|ZP_07379702.1| Tex-like protein [Pantoea sp. aB] gi|304354537|gb|EFM18908.1| Tex-like protein [Pantoea sp. aB] Length = 775 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|253577005|ref|ZP_04854328.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843615|gb|EES71640.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 743 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQLS V DVV GD V V +L+ D +G+ Sbjct: 671 QGTVRNVIDFGAFVDIGIKNDGLVHISQLSNGYVKHPMDVVSVGDNVTVWVLNVDVKKGR 730 Query: 683 IKLSMK 688 + L+M+ Sbjct: 731 VGLTMR 736 >gi|226942660|ref|YP_002797733.1| transcriptional accessory protein [Azotobacter vinelandii DJ] gi|226717587|gb|ACO76758.1| transcriptional accessory protein [Azotobacter vinelandii DJ] Length = 770 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V +VVK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVRVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 NRVGLSMRMGD 721 >gi|332525945|ref|ZP_08402086.1| putative transcription accessory protein [Rubrivivax benzoatilyticus JA2] gi|332109496|gb|EGJ10419.1| putative transcription accessory protein [Rubrivivax benzoatilyticus JA2] Length = 779 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+SQLS + V +VVK G TV V++L+ D R Sbjct: 659 VLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGQTVKVRVLEVDLAR 718 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 719 KRISLTMKL 727 >gi|260599708|ref|YP_003212279.1| protein YhgF [Cronobacter turicensis z3032] gi|260218885|emb|CBA34240.1| Protein yhgF [Cronobacter turicensis z3032] Length = 787 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 666 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPR 725 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 726 KRIALTMRLDEQ 737 >gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis Length = 245 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ AG PI+ +A I++G+ K+ IL Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D++ +ED +D V T SG +Q + S + L A++G ++++ Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233 Query: 536 SKVLSESRLQL 546 +VL +S +L Sbjct: 234 KEVLGDSLPEL 244 >gi|332298351|ref|YP_004440273.1| ribosomal protein S1 [Treponema brennaborense DSM 12168] gi|332181454|gb|AEE17142.1| ribosomal protein S1 [Treponema brennaborense DSM 12168] Length = 572 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVK 673 D VN + KG+V K+ DFGAF+ +GL HIS+ S +++ K SD+VK GD V Sbjct: 284 DKYHVNDVVKGRVTKLTDFGAFIELEEGIEGLAHISEFSWVKKINKASDMVKIGDEVECM 343 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L +D G++ L +K V N Sbjct: 344 VLGYDIQAGRVSLGLKQVTNN 364 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682 KG V FGAF+ G DGL+HI+ +S V + D VK+G + +K++ D K Sbjct: 208 KGAVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIELKVIRLDPAEKR 266 Query: 683 IKLSMK 688 I LS+K Sbjct: 267 INLSLK 272 Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679 +G++V + DFG FV G +GLV+ + LS R + VK+ GD V V ++D + + Sbjct: 467 EGEIVSITDFGLFVRAPGGIEGLVNKANLSDNRDEPYEEAVKKYAVGDKVNVYVVDVNPE 526 Query: 680 RGKIKLSMK 688 + K+ S+K Sbjct: 527 KQKVAFSVK 535 >gi|308172343|ref|YP_003919048.1| RNA binding protein [Bacillus amyloliquefaciens DSM 7] gi|307605207|emb|CBI41578.1| putative RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus amyloliquefaciens DSM 7] Length = 719 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV+ +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|283851123|ref|ZP_06368407.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B] gi|283573519|gb|EFC21495.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B] Length = 507 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G+V ++ DFGAFV +GL+H+S++S R+AK SDVV G+TV V + D D + Sbjct: 296 EGKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKR 355 Query: 682 KIKLSMKVV 690 +I LS+K V Sbjct: 356 RISLSLKEV 364 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D + ++ L E E A +R + V + V + FGAFV +GLVH Sbjct: 173 DGKNIVVSRRKLQEQERAESELRFLESV-NPGDVIPAVVTRFAAFGAFVEVAPGLEGLVH 231 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGKIKLSMK 688 +S+LS R K D V G V VK+L FD R +I LS+K Sbjct: 232 LSELSWSRAEKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIK 275 >gi|262195845|ref|YP_003267054.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM 14365] gi|262079192|gb|ACY15161.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM 14365] Length = 801 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%) Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 R+ + ++ D+ PE+ +G V V DFGAFV +DGLVHISQLS V +VVK Sbjct: 642 RDDVNTLEDLKPEMQ--LEGVVTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVK 699 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688 GD + V++LD D R +I LS + Sbjct: 700 VGDKIKVRVLDVDLARKRIALSAR 723 >gi|145637928|ref|ZP_01793570.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] gi|145268868|gb|EDK08829.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] Length = 770 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689 + V VVK G+ V +K+L+ D R +I L+M++ Sbjct: 685 DKFVEDPHQVVKTGNIVKIKVLEVDVPRKRIALTMRL 721 >gi|78221406|ref|YP_383153.1| RNA binding S1 [Geobacter metallireducens GS-15] gi|78192661|gb|ABB30428.1| RNA binding S1 [Geobacter metallireducens GS-15] Length = 757 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A R+ IR ++D+ E + +G V V FGAFV +DGLVH+S LST V ++ V Sbjct: 635 AFRDDIRELSDLKE-GMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAV 693 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 + G+ V VK+L D R +I LS++ + +P Sbjct: 694 RVGEVVKVKVLAVDVPRKRISLSIREAMEGGARP 727 >gi|328552155|gb|AEB22647.1| RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus amyloliquefaciens TA208] gi|328910428|gb|AEB62024.1| putative RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus amyloliquefaciens LL3] Length = 719 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV+ +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|323141764|ref|ZP_08076634.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Phascolarctobacterium sp. YIT 12067] gi|322413753|gb|EFY04602.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Phascolarctobacterium sp. YIT 12067] Length = 689 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFD 678 ++Y G+VVKV +FG FV GLVH ++LS +R K +DV KEGD TV VK +D + Sbjct: 500 EVYTGKVVKVAEFGLFVEIGEGLVGLVHNTELSWDRSVKAADVAKEGDEVTVLVKSIDRE 559 Query: 679 DRGKIKLSMKVVDQNTGK 696 ++ ++ LS+K ++ K Sbjct: 560 NK-RVALSIKATLEDPWK 576 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 10/96 (10%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++EA++ I I DV +VV+++ FGA V +GLVHIS+++ ER+ S Sbjct: 576 KVEASQFHIGDILDV---------EVVRLLAFGAIVKLSDKVEGLVHISEIAPERIEAPS 626 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 DV++ G V +++ D D KI LS+ V ++ K Sbjct: 627 DVLEVGQVVKAEIIKMDLDSKKIGLSISKVKRDAEK 662 >gi|322382482|ref|ZP_08056370.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153544|gb|EFX45940.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 762 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQ+S + V DVV GD V V +L+ D +G+ Sbjct: 691 QGTVRNVIDFGAFVDIGIKSDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLNVDIKKGR 750 Query: 683 IKLSMK 688 + L+MK Sbjct: 751 VGLTMK 756 >gi|251809814|ref|ZP_04824287.1| S1 family RNA-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875438|ref|ZP_06284310.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135] gi|251806682|gb|EES59339.1| S1 family RNA-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295795|gb|EFA88317.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135] Length = 133 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG++ + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|315640774|ref|ZP_07895876.1| YhgF like protein [Enterococcus italicus DSM 15952] gi|315483529|gb|EFU74023.1| YhgF like protein [Enterococcus italicus DSM 15952] Length = 725 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + +ITD+ ++ KG V V+DFGAFV DGLVH+S+LS + V K S++V Sbjct: 636 RKDVLTITDLSAGMEL-KGTVRNVVDFGAFVDIGVKHDGLVHVSKLSEKFVKKASEIVAV 694 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD +VWV+ +D R ++ L+M Sbjct: 695 GDIVSVWVEQVDL-ARERVSLTM 716 >gi|156936431|ref|YP_001440347.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894] gi|156534685|gb|ABU79511.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894] Length = 775 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|146280673|ref|YP_001170826.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri A1501] gi|145568878|gb|ABP77984.1| S1 RNA binding domain protein [Pseudomonas stutzeri A1501] Length = 772 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ++D+ E + +G V V +FGAFV +DGLVHIS LS + V +VVK GD Sbjct: 640 VEKLSDL-EPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 698 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+++ D R ++ LSM++ D K Sbjct: 699 VKVKVMEVDIPRNRVGLSMRMSDTPGAK 726 >gi|71908357|ref|YP_285944.1| RNA binding S1 [Dechloromonas aromatica RCB] gi|71847978|gb|AAZ47474.1| RNA binding S1 [Dechloromonas aromatica RCB] Length = 772 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVH+S LS V DVVK G V VK+L+ D R Sbjct: 657 ILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSNTFVKDPHDVVKAGQVVKVKVLEVDLQR 716 Query: 681 GKIKLSMKVVDQNT 694 +I L+M++ D+ T Sbjct: 717 QRIALTMRMGDEPT 730 >gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus scrofa] Length = 245 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 S + R Y+ +TGE R R+ G R+A + Sbjct: 63 ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174 Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509 E+ G + + I ++MD ++ Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205 >gi|254559495|ref|YP_003066590.1| transcriptional accessory protein [Methylobacterium extorquens DM4] gi|254266773|emb|CAX22572.1| transcriptional accessory protein [Methylobacterium extorquens DM4] Length = 771 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ +R+A S+VVK GD V V +L D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714 Query: 683 IKLSMKV 689 I LSM++ Sbjct: 715 IALSMRL 721 >gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4] gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4] Length = 406 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG++ ++ +FGAF+ G DGLVHISQ++ E V +DV+ G+ V VK+L + + Sbjct: 208 IVKGKIARLTNFGAFIDLGGV-DGLVHISQIAYEHVKDPADVLTVGEEVNVKILSVNEEE 266 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 267 GRISLSIK 274 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S +A +V+ EGD + VK+L+ + Sbjct: 290 VGSVLDGLVKRLTSFGAFVEVFPGVEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVN 349 Query: 679 DRG-KIKLSMKVVDQNTGKP 697 ++ LS+K +++ +P Sbjct: 350 PTDQRLSLSIKALEEKPNQP 369 >gi|327395567|dbj|BAK12989.1| protein YhgF [Pantoea ananatis AJ13355] Length = 774 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+++ D R Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|307332556|ref|ZP_07611607.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113] gi|306881791|gb|EFN12926.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113] Length = 773 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ I +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 639 KEGVEKIGDL-SAGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKP 697 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 698 GDIVRVKVLDIDIPRKRISLTLRLDDE 724 >gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829] gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829] Length = 409 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 8/98 (8%) Query: 603 IEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +EAAR+ RS +T + K+ KG V +++FGAFV G DGL+HIS+LS V Sbjct: 201 LEAARKAERSEILTKLKPGMKL-KGTVSSIVEFGAFVDLGGI-DGLIHISELSWNHVNHP 258 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 ++VVK G V V++LD D +R +I L +K Q T P Sbjct: 259 AEVVKVGQEVEVQVLDIDLNRERISLGLK---QTTEDP 293 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + I +G V K++ FGAFV +GLVHIS+++ V + V K GD V VK+++ D Sbjct: 303 IGAIVEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEID 362 Query: 679 -DRGKIKLSMKVVDQNTG 695 +R +I LS+K + G Sbjct: 363 LERRRISLSIKAAAETLG 380 >gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064] gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] Length = 248 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|253576395|ref|ZP_04853725.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844288|gb|EES72306.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 411 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I G+V ++++FGAFV +GLVHISQ+S + + +V+KEG TV VK+LD + Sbjct: 289 IVTGEVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPHEVLKEGQTVQVKVLDVNPSE 348 Query: 682 K-IKLSMK 688 K + LS+K Sbjct: 349 KRVSLSIK 356 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V ++ FGAFV G DGLVH+S+++ V K +DV+ EGD V VK+L D + Sbjct: 203 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWNHVDKPADVLSEGDKVKVKVLKVDPE 261 Query: 680 RGKIKLSMK 688 +GKI LS+K Sbjct: 262 KGKISLSIK 270 Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG +VK+ D A+V DG++ I +LS+ + +D V+ G V K++ DD + + Sbjct: 33 KGTIVKIEDNQAYVSIGYKYDGVIPIRELSSVHLDNAADAVQVGQEVETKVVSIDDEKER 92 Query: 683 IKLSMKVVD 691 + LS + +D Sbjct: 93 LVLSKRAID 101 >gi|251792146|ref|YP_003006866.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700] gi|247533533|gb|ACS96779.1| ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700] Length = 548 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E++++ + ++ E ++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVVESESSQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD + VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347 >gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e] gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561] gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459] gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e] gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99] gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208] gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220] gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A] Length = 248 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|255723463|ref|XP_002546665.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida tropicalis MYA-3404] gi|240130796|gb|EER30359.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida tropicalis MYA-3404] Length = 1027 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 6/100 (6%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAK 659 E + +I S P+V + G V + +GAF+ G GL HISQ+S + ++A Sbjct: 84 ETTNKKTIILSPEKPPQVGDVLPGIVEGIQAYGAFIKL-GNTSGLCHISQISFDGSKIAS 142 Query: 660 TSDVVKEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGK 696 SD +K V+VK+ D ++G KI LSM+ +DQ TG+ Sbjct: 143 VSDYLKPRQAVYVKITDIQNQGSRKKISLSMRGIDQVTGE 182 >gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus] gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus] Length = 245 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 23/244 (9%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE------- 57 Query: 366 LSGTQ------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419 + G++ R Y+ +TGE R R+ G R+ + Sbjct: 58 IRGSRARALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHP 117 Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+ Sbjct: 118 RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADL 173 Query: 480 SGDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 S E+ G +A I ++MD + + E+ + L+ A R + + + Sbjct: 174 SHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDR 230 Query: 538 VLSE 541 V+ + Sbjct: 231 VVRQ 234 >gi|297156040|gb|ADI05752.1| transcription accessory protein [Streptomyces bingchenggensis BCW-1] Length = 796 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ I +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 641 KEGVEKIGDL-AAGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKP 699 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 700 GDIVRVKVLDVDIPRKRISLTLRLDDE 726 >gi|195978466|ref|YP_002123710.1| S1 RNA-binding domain transcription accessory protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975171|gb|ACG62697.1| S1 RNA-binding domain transcription accessory protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 710 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I S+ D+ V + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703 >gi|156407958|ref|XP_001641624.1| predicted protein [Nematostella vectensis] gi|156228763|gb|EDO49561.1| predicted protein [Nematostella vectensis] Length = 392 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686 M FG FV G + +GLVHISQL E RVA SDVV G V VK+L +I LS Sbjct: 1 MQFGCFVQLEGLKGRHEGLVHISQLRREGRVANVSDVVHRGQRVRVKVLSMAG-NRISLS 59 Query: 687 MKVVDQNTGK 696 MK VDQ+TG+ Sbjct: 60 MKDVDQDTGE 69 >gi|259046867|ref|ZP_05737268.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175] gi|259036490|gb|EEW37745.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175] Length = 397 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ +FGAF+ G DGLVHISQ+S E VAK SD ++ G V K++ D + Sbjct: 198 VVTGKVARLTNFGAFIDLGGV-DGLVHISQISHEHVAKASDKLEVGQEVQAKVISVDPES 256 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 257 GRVSLSIK 264 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ++ + +A +V+KEG V VK+L+ Sbjct: 280 VGSVLDGLVKRLTTFGAFVELFPGVEGLVHISQIAHQHIATPHEVLKEGQEVQVKVLEVH 339 Query: 679 -DRGKIKLSMKVVDQ 692 ++ +I LS+K + + Sbjct: 340 PEQQRISLSIKALQE 354 >gi|238754100|ref|ZP_04615458.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473] gi|238707596|gb|EEP99955.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473] Length = 782 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ V I +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETMNDL-TVGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAG 697 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I L+M++ +Q Sbjct: 698 DIVKVKVMEVDLQRKRIALTMRLDEQ 723 >gi|225868211|ref|YP_002744159.1| transcription accessory protein [Streptococcus equi subsp. zooepidemicus] gi|225701487|emb|CAW98645.1| putative transcription accessory protein [Streptococcus equi subsp. zooepidemicus] Length = 710 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I S+ D+ V + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703 >gi|225870852|ref|YP_002746799.1| transcription accessory protein [Streptococcus equi subsp. equi 4047] gi|225700256|emb|CAW94488.1| putative transcription accessory protein [Streptococcus equi subsp. equi 4047] Length = 710 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I S+ D+ V + +G V V+DFGAFV DGL+HIS++S V S VV Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703 >gi|161505930|ref|YP_001573042.1| hypothetical protein SARI_04111 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867277|gb|ABX23900.1| hypothetical protein SARI_04111 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 776 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVDDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 10 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 69 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 70 LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 122 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 123 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 178 Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509 E+ G +A I ++MD ++ Sbjct: 179 HVEEAAGGPQLALALLPASGQIALLEMDARL 209 >gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101] gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101] Length = 720 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G V V DFGAFV +DGLVH SQ++ V D+VK GD V V++LD D R Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDIVEVRILDVDLKR 709 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 710 KRISLSMK 717 >gi|73663557|ref|YP_302338.1| hypothetical protein SSP2248 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496072|dbj|BAE19393.1| putative RNA binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 132 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K +P Sbjct: 64 ADDGKISLSIKKAKDRPRRP 83 >gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium dendrobatidis JAM81] Length = 253 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 5/156 (3%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R + +VGL GS+ G+T+ + V G +E + + S R Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAV-YGPKESK--IQSAQLHDR 80 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 + YN ++GE +R + + +R PV+ T+ FP + + I +I Sbjct: 81 AVINVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVV-MTSTFPRSEIDIYVQIL 139 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466 + DG + A + + LA++DAG+P+S V + G Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSDYVIACSAGF 175 >gi|291544171|emb|CBL17280.1| Transcriptional accessory protein [Ruminococcus sp. 18P13] Length = 722 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV DGLVHISQ+ + D VK G V V++LD D R +I Sbjct: 651 GTVRNVIDFGAFVDIGVHEDGLVHISQICNRYIKHPLDAVKVGQVVKVRVLDVDVKRKRI 710 Query: 684 KLSMKVVDQN 693 L+M++ D N Sbjct: 711 GLTMRLDDTN 720 >gi|260888130|ref|ZP_05899393.1| protein YhgF [Selenomonas sputigena ATCC 35185] gi|330840001|ref|YP_004414581.1| Tex-like protein [Selenomonas sputigena ATCC 35185] gi|260862159|gb|EEX76659.1| protein YhgF [Selenomonas sputigena ATCC 35185] gi|329747765|gb|AEC01122.1| Tex-like protein [Selenomonas sputigena ATCC 35185] Length = 727 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++D+ + + +G V + DFG FV GL+HIS+LS +RV DVV Sbjct: 638 RQAIVKLSDI-KAGAVMRGTVRNITDFGVFVDIGIKTAGLIHISELSKKRVKHPLDVVSV 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695 GD V V ++ D +RG+I LS+K V + Sbjct: 697 GDIVNVMVIKVDEERGRIGLSLKQVPKEAA 726 >gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] Length = 238 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 40/210 (19%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR ++ +R+I ++G ++ + GS+L G T+ I V + D L G + Sbjct: 1 MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNI--------KDGLPGWKS 52 Query: 372 ND----FMMHYNFLPCATGEVSRMGAPSRREIGHG-------RLARRAIHPVLPQTAQFP 420 + Y LP AT S+RE G G RL R + + Sbjct: 53 SGSGGWLTAEYRMLPGAT------HTRSKREAGVGGRSSEIQRLIGRTLRAAVDLDKLGD 106 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPIS----KPVAGIAMGLVKD 469 T++I ++ +DG + A++ G+ LALM+A GV IS P++ I++G+VK Sbjct: 107 RTIQIDCDVLNADGGTRCASINGAMLALMNALKKMEEQGVDISGIIKTPLSAISVGVVKG 166 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 L D+ ED +D V T G Sbjct: 167 ----QALLDLCYKEDSAADVDMNVIMTAKG 192 >gi|27469193|ref|NP_765830.1| hypothetical protein SE2275 [Staphylococcus epidermidis ATCC 12228] gi|57866061|ref|YP_187742.1| hypothetical protein SERP0146 [Staphylococcus epidermidis RP62A] gi|293366150|ref|ZP_06612837.1| general stress protein 13 [Staphylococcus epidermidis M23864:W2(grey)] gi|27316742|gb|AAO05917.1|AE016751_212 polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57636719|gb|AAW53507.1| general stress protein 13 [Staphylococcus epidermidis RP62A] gi|291319744|gb|EFE60103.1| general stress protein 13 [Staphylococcus epidermidis M23864:W2(grey)] gi|329737883|gb|EGG74111.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU045] Length = 133 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG++ + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K KP Sbjct: 64 ADDGKISLSIKKAKDRPRKP 83 >gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4] gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4] Length = 490 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 209 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 267 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 268 RERVSLSLKATQED 281 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV GD VK++D D Sbjct: 292 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 351 Query: 679 -DRGKIKLSMKVVDQN 693 DR +I LS+K D++ Sbjct: 352 LDRRRISLSLKQADED 367 >gi|319775511|ref|YP_004137999.1| transcriptional accessory protein [Haemophilus influenzae F3047] gi|317450102|emb|CBY86316.1| predicted transcriptional accessory protein [Haemophilus influenzae F3047] Length = 770 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V VVK G Sbjct: 640 EGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VK+L+ D R +I L+M++ + +N GK Sbjct: 699 NIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 731 >gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B] gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B] Length = 515 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+LS V VV+ GD ++VK++D D Sbjct: 302 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELSDRHVEIPEQVVQVGDEIFVKIIDID 361 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 362 LERRRISLSLK 372 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 219 QIRNGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGMPVTVEVLDVDLD 277 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 278 RERVSLSLKSTQED 291 >gi|260913659|ref|ZP_05920135.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325] gi|260632198|gb|EEX50373.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325] Length = 549 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQILENLQEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD + VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + V G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVESKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPN 352 >gi|284028353|ref|YP_003378284.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM 17836] gi|283807646|gb|ADB29485.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836] Length = 815 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 20/154 (12%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAA----REMIRS 612 +R ++ G ++ ++ T A ++ D+ + + LAE+E R ++ Sbjct: 578 VRRILDKTGSDLKSLIGNTAALRSVKAADFVDETFGLPTVTDILAELEKPGRDPRPAFKT 637 Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 T V+KI +GQV V FGAF+ +DGL H+S LS V +VV Sbjct: 638 ATFAEGVDKIADLKPGMRLEGQVTNVAAFGAFIDIGVHQDGLAHVSALSKNYVKDPREVV 697 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 K GD V VK+L+ D R +I L+++ +D G P Sbjct: 698 KPGDIVKVKVLEVDIPRQRISLTLR-LDDEIGAP 730 >gi|225019196|ref|ZP_03708388.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum DSM 5476] gi|224948048|gb|EEG29257.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum DSM 5476] Length = 663 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ K Y G V + D+GAFV G DG++HI++LS ++ SD+VK GD V V + D Sbjct: 477 EIGKTYTGTVKSLTDYGAFVDL-GGVDGMIHITELSWTKIKHPSDIVKVGDVVEVYVKDI 535 Query: 678 D-DRGKIKLSMKVVDQN 693 D ++ KI L + + N Sbjct: 536 DQEKKKISLGYRKSEDN 552 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V+++ +V + FGAF DGL+HISQ++ + +AK SDV+ G V K+ + D Sbjct: 563 VDQVVNVTIVSLTQFGAFAEIIPGVDGLIHISQIANQHIAKVSDVLSVGQKVDAKITEID 622 Query: 679 -DRGKIKLSMKVV 690 D+ +I LSM+ + Sbjct: 623 VDKKRISLSMRAL 635 >gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum BKT015925] gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum BKT015925] Length = 634 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%) Query: 610 IRSITDVPEVN--------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 I+ +T+ P N I G+VV+ DFGAFV DGLVH+S++S +R+ K S Sbjct: 544 IKKLTEDPWTNIEEKYPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPS 603 Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688 DV+K + V K+L + GK + LS+K Sbjct: 604 DVLKVDEEVKAKILSVNKDGKRLSLSIK 631 >gi|116493276|ref|YP_805011.1| RNA-binding protein [Pediococcus pentosaceus ATCC 25745] gi|116103426|gb|ABJ68569.1| RNA binding protein (S1 domain) [Pediococcus pentosaceus ATCC 25745] Length = 168 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAF+ R GLVHIS++S + DV+ GDTV VK+L Sbjct: 4 EVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKVLSI 63 Query: 678 DDRGKIKLSM-KVVDQ 692 D GKI LS+ K VD Sbjct: 64 ADDGKIALSIRKAVDH 79 >gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455] gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455] Length = 518 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684 +VV++ DFGAFV +GL+HISQLST RV K DV++EG V ++L+ + +I+ Sbjct: 385 KVVRLADFGAFVEIEKGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNPAERRIR 444 Query: 685 LSMKVVD 691 LS+ ++ Sbjct: 445 LSISAIE 451 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 8/97 (8%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 ++ A RE S +V +V G V V FG FV+ G DGLVH+S++S +R +K+ Sbjct: 194 DLSAKREKFYSEVNVGDV---LDGTVSSVTTFGLFVN-VGPLDGLVHVSEVSWQRSSKSR 249 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 + K+GD V VK++ D + KI LS++ Q G P Sbjct: 250 ETYKKGDAVKVKVIGIDKENNKISLSIR---QAQGNP 283 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 KG V V DFGAFV +GL+HI LS R+ +V+ +G V +L+ D K Sbjct: 298 KGVVTNVTDFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKK 356 >gi|256848385|ref|ZP_05553828.1| RNA-binding S1 domain-containing protein [Lactobacillus coleohominis 101-4-CHN] gi|256714983|gb|EEU29961.1| RNA-binding S1 domain-containing protein [Lactobacillus coleohominis 101-4-CHN] Length = 167 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G+V + +FGAF+ + GLVHISQ+S V DV+ GD V VK++ D GKI Sbjct: 11 GKVSGITNFGAFIDLADHQTGLVHISQVSNHYVKDIHDVLSVGDEVTVKVIKVADDGKIA 70 Query: 685 LSMKVVDQ 692 LS+K ++ Sbjct: 71 LSIKAAEE 78 >gi|238927087|ref|ZP_04658847.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531] gi|238885067|gb|EEQ48705.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531] Length = 729 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++D+ V I +G V + DFGAF+ + GL+HIS++S RV DV+ Sbjct: 639 RQNIVKLSDLA-VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSCHRVRHPLDVLSV 697 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 GDT+ V ++ D+ RG+I LS+K Sbjct: 698 GDTLDVMIISIDEARGRIGLSVK 720 >gi|89076064|ref|ZP_01162424.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34] gi|89048216|gb|EAR53798.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34] Length = 772 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G + V +FGAFV +DGLVHIS LS + ++ +VVK GD V VK+++ D R Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I +SM++ D+ Sbjct: 713 KRIGMSMRLSDE 724 >gi|332143380|ref|YP_004429118.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553402|gb|AEB00121.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 788 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E + +I D+ + I +G V V +FGAFV +DGLVHIS L+ + ++ +VV Sbjct: 634 AFKEGVETINDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPREVV 692 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 K GD V VK+L+ D R +I +M++ D Sbjct: 693 KAGDIVKVKVLEVDVARKRISFTMRLDD 720 >gi|116627481|ref|YP_820100.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMD-9] gi|116100758|gb|ABJ65904.1| SSU ribosomal protein S1P [Streptococcus thermophilus LMD-9] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 6/87 (6%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 +EA +E+ + EV + G+V ++ FGAF+ G DGLVH+++LS ER Sbjct: 181 MEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 235 Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688 VV GD + VK+L D+ G++ LS+K Sbjct: 236 VVSVGDEIEVKVLAIDEEAGRVSLSLK 262 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFG FV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 281 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|327474468|gb|EGF19874.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK408] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|329122447|ref|ZP_08251034.1| YhgF like protein [Haemophilus aegyptius ATCC 11116] gi|327473729|gb|EGF19148.1| YhgF like protein [Haemophilus aegyptius ATCC 11116] Length = 773 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS + V VVK G Sbjct: 643 EGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 701 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696 + V VK+L+ D R +I L+M++ + +N GK Sbjct: 702 NIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 734 >gi|294055034|ref|YP_003548692.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221] gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221] Length = 552 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ + KG+V K+ +GAFV DGLVHISQ+S ERV K DV+ G V +++ Sbjct: 444 KIGDMVKGKVSKITSYGAFVELDNDIDGLVHISQISEERVEKIKDVLDSGAEVTARVIKI 503 Query: 678 D-DRGKIKLSMKVVD 691 D D +I LS+K + Sbjct: 504 DKDERRIGLSIKAAN 518 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G+V + +GAFV DG+VH+S +S T +V S+VVK+GD V +LD D D Sbjct: 363 RGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADSQ 422 Query: 682 KIKLSMK 688 +I L MK Sbjct: 423 RISLGMK 429 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 15/153 (9%) Query: 549 FTPRVEIMAIPPDQIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 F P +I PP + +G KV+ K+N++ V ++ L E E Sbjct: 125 FLPASQIDIQPPKNLDQYVGQTYDFKVV---------KINLERKNIV-VSRRELIE-EQR 173 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E R++ + + +GQV + D+GAFV G DGL+HI+ +S R+ S++VK+ Sbjct: 174 MEKRRALLEEVKPGDKRRGQVKNITDYGAFVDLDGL-DGLLHITDMSWGRIQHPSEMVKQ 232 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 G+ + V +++ D DR ++ L +K + N + I Sbjct: 233 GEEIEVVIIEIDRDRERVSLGLKQLADNPWERI 265 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+VV ++ +GAFV +GLVH+++LS T+R++K +V++ G+ + +L + K Sbjct: 277 GKVVNLVPYGAFVEIEEGVEGLVHVTELSWTKRISKPGEVLRIGEEIQAVVLGIQKEEQK 336 Query: 683 IKLSMKVVDQN 693 I L ++ +D N Sbjct: 337 ISLGVRQLDAN 347 >gi|325687504|gb|EGD29525.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK72] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|324991109|gb|EGC23043.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK353] gi|324992856|gb|EGC24776.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK405] gi|324994504|gb|EGC26417.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK678] gi|325689660|gb|EGD31664.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK115] gi|325696551|gb|EGD38441.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK160] gi|327462163|gb|EGF08490.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1] gi|327469991|gb|EGF15455.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK330] gi|327489845|gb|EGF21635.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1058] gi|328946259|gb|EGG40403.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1087] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|322372522|ref|ZP_08047058.1| ribosomal protein S1 [Streptococcus sp. C150] gi|321277564|gb|EFX54633.1| ribosomal protein S1 [Streptococcus sp. C150] Length = 417 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + D Sbjct: 298 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 357 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 358 ERVSLSIKALEE 369 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I G+V ++ FGAF+ G DGLVH+++LS ER VV GD V VK+L Sbjct: 209 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVDVKVLAI 267 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 268 DEEAGRVSLSLK 279 >gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B] gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B] gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B] Length = 719 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + KG V V DFGAFV +DGLVH S++ V DVVK GD + VK+L+ D+ R Sbjct: 649 VLKGTVRNVADFGAFVDIGVHQDGLVHKSEMRNSFVKHPLDVVKVGDIIDVKILEVDEKR 708 Query: 681 GKIKLSMK 688 +I LSMK Sbjct: 709 RRIALSMK 716 >gi|91791611|ref|YP_561262.1| RNA binding S1 [Shewanella denitrificans OS217] gi|91713613|gb|ABE53539.1| RNA binding S1 [Shewanella denitrificans OS217] Length = 799 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 4/85 (4%) Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + + D+ PE+ I +G V V +FGAFV +DGLVHIS L+ + V+ +VK Sbjct: 644 KEGVEELKDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVK 701 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689 GD V VK+++ D +R +I LSM++ Sbjct: 702 AGDVVKVKVMEVDIERRRIGLSMRL 726 >gi|323351529|ref|ZP_08087183.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66] gi|322122015|gb|EFX93741.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333] gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333] gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 489 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 212 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 270 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 271 RERVSLSLKATQED 284 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FG FV +GLVH+S+L+T V V K GD ++VK++D Sbjct: 294 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDI 353 Query: 678 D-DRGKIKLSMK 688 D +R +I LS+K Sbjct: 354 DLERRRISLSLK 365 >gi|260774748|ref|ZP_05883651.1| transcription accessory protein [Vibrio coralliilyticus ATCC BAA-450] gi|260609310|gb|EEX35462.1| transcription accessory protein [Vibrio coralliilyticus ATCC BAA-450] Length = 775 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ++D+ E + +G V V +FGAFV +DGLVHIS L+ V+ +VVK GD Sbjct: 642 VNEVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+++ D R +I LSM++ D+ Sbjct: 701 VKVKVMEVDIQRKRIGLSMRLNDE 724 >gi|327478939|gb|AEA82249.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 772 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + ++D+ E + +G V V +FGAFV +DGLVHIS LS + V +VVK GD Sbjct: 640 VEKLSDL-EPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 698 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 V VK+++ D R ++ LSM++ D K Sbjct: 699 VMVKVMEVDIPRQRVGLSMRMSDTPGAK 726 >gi|154502539|ref|ZP_02039599.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149] gi|153796935|gb|EDN79355.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149] Length = 358 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D ++ KI Sbjct: 282 GKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSIGQEITAKVVDLNEAEKKI 341 Query: 684 KLSMKVVDQNT 694 LSMK ++ +T Sbjct: 342 SLSMKALEPDT 352 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +G V V DFGAF+ G DGL+HIS++S RV V + GD V V + D Sbjct: 192 QVGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDI 250 Query: 678 DDRGKIKLSMKVVDQN 693 +D KI LS+K + N Sbjct: 251 NDT-KIALSLKFPETN 265 >gi|49482735|ref|YP_039959.1| hypothetical protein SAR0509 [Staphylococcus aureus subsp. aureus MRSA252] gi|295427042|ref|ZP_06819679.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp. aureus EMRSA16] gi|49240864|emb|CAG39531.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295129045|gb|EFG58674.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 133 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVDVKVLSI 63 Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697 D GKI LS+K Q+T KP Sbjct: 64 ADDGKISLSIKKAKDRPRRQHTSKP 88 >gi|118380258|ref|XP_001023293.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena thermophila] gi|89305060|gb|EAS03048.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena thermophila SB210] Length = 1291 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 E + I G V K+ +FG FV + G ++GLVHISQLS++RV +V + G V VK+ Sbjct: 320 EKDSILDGVVSKISEFGCFVTLENVGGRKEGLVHISQLSSKRVGNIQEVARIGQRVKVKV 379 Query: 675 LDFDDRGKIKLSMKVVDQNTG 695 + KI LSMK VDQ TG Sbjct: 380 ISVIG-NKISLSMKDVDQITG 399 >gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 696 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V ++ +FGAFV G DGL+HIS+LS RV SDVV GD V V++L+ D ++ Sbjct: 467 IIEGTVQRLTNFGAFVDVGGV-DGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEK 525 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L +K Q KP Sbjct: 526 NRIALGLK---QTMEKP 539 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688 ++DFGAFV DGL+H+SQ+S E V K D + G+ V VK+ D D+ KI LS+K Sbjct: 560 LLDFGAFVRLEQGVDGLLHVSQISREHVEKPQDKLSIGEEVTVKVTDIDEENQKISLSIK 619 Query: 689 VV 690 + Sbjct: 620 AL 621 >gi|320107286|ref|YP_004182876.1| Tex-like protein [Terriglobus saanensis SP1PR4] gi|319925807|gb|ADV82882.1| Tex-like protein [Terriglobus saanensis SP1PR4] Length = 750 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E +R I DV + + +G V V FGAF+ +DGLVHIS++S + S+V+K G Sbjct: 634 ETVRDIADV-QPGMVLEGVVTNVTKFGAFIDVGVHQDGLVHISEISNRFIKDPSEVLKAG 692 Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696 V K+L D + K I LS+K + + G+ Sbjct: 693 QIVKAKVLSADSKTKRISLSIKALREPAGR 722 >gi|83312516|ref|YP_422780.1| TEX protein [Magnetospirillum magneticum AMB-1] gi|82947357|dbj|BAE52221.1| TEX protein [Magnetospirillum magneticum AMB-1] Length = 787 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E + ++ D+ + I +G V V +FGAFV +DGLVHIS L+ V +VV Sbjct: 651 AFKEGVETLNDL-KPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVV 709 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKV 689 K GD V VK+L+ D R +I LSM++ Sbjct: 710 KPGDLVKVKVLEVDIKRSRIALSMRM 735 >gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063] gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063] gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 489 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 212 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 270 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 271 RERVSLSLKATQED 284 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FG FV +GLVH+S+L+T V V K GD ++VK++D Sbjct: 294 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDI 353 Query: 678 D-DRGKIKLSMK 688 D +R +I LS+K Sbjct: 354 DLERRRISLSLK 365 >gi|15602666|ref|NP_245738.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721105|gb|AAK02885.1| RpS1 [Pasteurella multocida subsp. multocida str. Pm70] Length = 549 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQILENLQEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD + VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLSGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347 >gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4] gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4] Length = 810 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A ++ + I+D+ + K+ +G V V +FGAFV +DGLVH+SQL+ V VV Sbjct: 658 ALQDGVEEISDLKQGMKL-EGTVTNVTNFGAFVDVGVHQDGLVHVSQLADRFVDDPHTVV 716 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688 K GD V V +LD D R +I +SMK Sbjct: 717 KAGDIVKVTILDVDVPRKRISMSMK 741 >gi|290892098|ref|ZP_06555094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071] gi|290558221|gb|EFD91739.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071] Length = 381 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S E + +V+ EG TV VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331 Query: 679 DRGK-IKLSMK 688 + K + LS+K Sbjct: 332 EVDKRLSLSIK 342 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A + ++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256 >gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 236 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 21/227 (9%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R D R +R + A+ G++ GS+ F G+T+AI V ++++ + R Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVD---RG 61 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--VLPQTAQFPYTLRIVSEIT 430 + Y+ LP + + ++ G RR+I ++ A++ +L + +R+ IT Sbjct: 62 VIVCKYDMLPFSVPDRAKPGM-DRRDIEISQVITNALNRAIILEDMPRAMINVRVY--IT 118 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---- 486 ++D + A++ +S+A DAG+P+ VA +A G + D + D+S +E+ Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDH----VCLDLSKEEEDFHEGE 174 Query: 487 GHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531 G D +A + + I +Q+D G +S + + ++ K G + I Sbjct: 175 GATDVPIAFLPSKNEILLLQLD---GRVSRDELKKVIEVGKEGAMKI 218 >gi|270264442|ref|ZP_06192708.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13] gi|270041578|gb|EFA14676.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13] Length = 774 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ++ D+ + + +G V V +FGAFV +DGLVHIS L+ + V VVK G Sbjct: 639 EGVETLNDL-QPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAG 697 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 D V VK+++ D R +I LSM++ +Q Sbjct: 698 DIVKVKVMEVDLQRKRIALSMRLDEQ 723 >gi|238027085|ref|YP_002911316.1| RNA binding S1 [Burkholderia glumae BGR1] gi|237876279|gb|ACR28612.1| RNA binding S1 [Burkholderia glumae BGR1] Length = 776 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAFV +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLLP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQVVKVKVLEVDVKRQRIALTMRLADE 729 >gi|197303562|ref|ZP_03168601.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC 29176] gi|197297560|gb|EDY32121.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC 29176] Length = 362 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D + Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGVDALLHVSQISKNHVDKPSDVLSIGQEITAKVVDLN 335 Query: 679 D-RGKIKLSMKVVDQNT 694 + KI LSMK ++ ++ Sbjct: 336 EAEKKISLSMKALESDS 352 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAFV G DGL+HIS++S RV V GD + V + D D KI Sbjct: 198 EGTVKNVTDFGAFVDLGGV-DGLLHISEMSWGRVDNPKKVFHVGDELKVLVKDIRDT-KI 255 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 256 ALSLKFPETN 265 >gi|146305398|ref|YP_001185863.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina ymp] gi|145573599|gb|ABP83131.1| RNA binding S1 domain protein [Pseudomonas mendocina ymp] Length = 774 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ D+ ++ + +G V V +FGAFV +DGLVHIS LS + + + VK Sbjct: 637 QEGVETLNDL-KLGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D R +I LSM++ D Sbjct: 696 GDVVKVKVMEVDIPRNRIALSMRMGD 721 >gi|327460308|gb|EGF06645.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1057] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 LIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|293390073|ref|ZP_06634407.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950607|gb|EFE00726.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 548 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++++ EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + VK+L FD DR ++ L +K + Q+ Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347 >gi|261868288|ref|YP_003256210.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413620|gb|ACX82991.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 548 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++++ EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + VK+L FD DR ++ L +K + Q+ Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347 >gi|115522443|ref|YP_779354.1| RNA-binding S1 domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516390|gb|ABJ04374.1| RNA binding S1 domain protein [Rhodopseudomonas palustris BisA53] Length = 784 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ D+ +V I +G V V FGAFV +DGLVHIS +S + +VVK Sbjct: 643 KEGVETLKDL-KVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKP 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 GD V VK+L+ D R +I L++++ D+ K Sbjct: 702 GDIVKVKVLEVDVARKRIALTLRLDDEVGAK 732 >gi|326803716|ref|YP_004321534.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a] gi|326650493|gb|AEA00676.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a] Length = 440 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ +G V ++ +FGAFV G DGLVHISQ++ V SD ++ G TV VK+L Sbjct: 210 EEGEVVEGTVARLANFGAFVDLGGI-DGLVHISQIAHHHVNHPSDELEVGQTVKVKILSI 268 Query: 678 D-DRGKIKLSMK 688 D DR +I LS K Sbjct: 269 DEDRDRISLSTK 280 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V +++DFGAFV +GLVHISQ+S E V SD ++EG + VK+LD + + ++ Sbjct: 302 GVVRRIVDFGAFVEVFPGVEGLVHISQISHEHVNHPSDKLEEGQDIKVKVLDVNPEEHRL 361 Query: 684 KLSMKVVDQ 692 LS+K +++ Sbjct: 362 SLSIKALEE 370 >gi|294496935|ref|YP_003560635.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM B1551] gi|295702302|ref|YP_003595377.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM 319] gi|294346872|gb|ADE67201.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551] gi|294799961|gb|ADF37027.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319] Length = 155 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDEVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|329937088|ref|ZP_08286717.1| transcriptional accessory protein [Streptomyces griseoaurantiacus M045] gi|329303695|gb|EGG47580.1| transcriptional accessory protein [Streptomyces griseoaurantiacus M045] Length = 795 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I+D+ + +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 647 RDGVEKISDLTP-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKP 705 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+LD D R +I L++++ D+ Sbjct: 706 GDIVKVKVLDVDIPRKRISLTLRLDDE 732 >gi|330501331|ref|YP_004378200.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina NK-01] gi|328915617|gb|AEB56448.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina NK-01] Length = 776 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ D+ ++ + +G V V +FGAFV +DGLVHIS LS + + + VK Sbjct: 637 QEGVETLNDL-KLGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D R +I LSM++ D Sbjct: 696 GDVVKVKVMEVDIPRNRIALSMRMGD 721 >gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] Length = 238 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+D R++ +R +S + G+ L GDT+ + ++ T Q L GT + Sbjct: 1 MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIET----QVPRWLKGTGK 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT E ++ A ++ G RL R++ ++ T+ I Sbjct: 57 GWITAEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+++AL+DA P+ VA +++G +K+G+ +L Sbjct: 117 DVLQADGGTRTASITGAAVALVDALEKLQAAKKLKADPLVGLVAAVSVG-IKNGE---VL 172 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED D V T G Sbjct: 173 LDLNYSEDSSCDTDLNVVMTQKG 195 >gi|332361158|gb|EGJ38962.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1056] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816] Length = 228 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|317470634|ref|ZP_07930019.1| S1 RNA binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901769|gb|EFV23698.1| S1 RNA binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 309 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAFV GL+HISQ S +R+ ++V+EG V VK+L D Sbjct: 208 VLEGTVENIMPYGAFVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-N 266 Query: 682 KIKLSMKVVDQN 693 KI LSMK ++++ Sbjct: 267 KISLSMKALEES 278 >gi|297587825|ref|ZP_06946469.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516] gi|297574514|gb|EFH93234.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516] Length = 697 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I G V V+DFGAF+ DGL HIS++S + +V + Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSDSYIKNPREVCEV 673 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689 DTV VK++ D DRG + LSMK+ Sbjct: 674 SDTVKVKIIGIDKDRGLVSLSMKL 697 >gi|282882121|ref|ZP_06290762.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus lacrimalis 315-B] gi|281298151|gb|EFA90606.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus lacrimalis 315-B] Length = 725 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ +FGAFV G DGLVHIS+LS RV S+VV GD V V++L D ++ Sbjct: 467 VIEGTVQRLTNFGAFVDI-GGIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEK 525 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L +K Q T KP Sbjct: 526 DRIALGLK---QTTEKP 539 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++DFGAFV DGL+H+SQ+ E + K D ++ G V VK+++ D + KI LS+K Sbjct: 560 ILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSIK 619 Query: 689 VV 690 + Sbjct: 620 AL 621 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 590 DGTVKIASSSLAEIEAAREMIRSITD-VPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646 D +K A SS+ + EM+ +I + + K I G+V+ V D V+ DG+ Sbjct: 259 DKVIKEAVSSMENFDKG-EMMEAIDNSFKRIKKGEIVTGEVLYVTDNEVMVNLGYRSDGI 317 Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 + +LS AK SD+ K+GD + V +L DD G + LS + V+ Sbjct: 318 ISKEELSKNTDAKPSDLYKQGDEIEVFVLKMDDGDGNVVLSARRVE 363 >gi|225375199|ref|ZP_03752420.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM 16841] gi|225212950|gb|EEG95304.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM 16841] Length = 748 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V V+DFGAFV +DGLVHISQ+S + + +VV GD V VK++ D + Sbjct: 680 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEVVSVGDIVEVKVMSVDLKK 739 Query: 681 GKIKLSMKV 689 +I+L+MK+ Sbjct: 740 QRIQLTMKL 748 >gi|254435439|ref|ZP_05048946.1| ribosomal protein S1 [Nitrosococcus oceani AFC27] gi|207088550|gb|EDZ65822.1| ribosomal protein S1 [Nitrosococcus oceani AFC27] Length = 580 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE A RE + S E K KG V + D+GAFV G DGL+HI+ +S +R+ Sbjct: 195 AEYSAEREALLSSL---EEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 250 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 S+VV GD + V++L FD +R ++ L +K + ++ K + Sbjct: 251 SEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDL 289 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V V D+G FV +GLVH+S++ T + S +V+ G+ V V +LD D +R + Sbjct: 301 GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRR 360 Query: 683 IKLSMK 688 I L MK Sbjct: 361 ISLGMK 366 Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG FV G DGLVH+S +S A +++ K+GD V +L D +R Sbjct: 388 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 445 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++ + Sbjct: 446 ERISLGVKQLEDD 458 >gi|187932428|ref|YP_001885998.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum B str. Eklund 17B] gi|187720581|gb|ACD21802.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum B str. Eklund 17B] Length = 635 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+VV++ DFGAF+ DGLVHIS++S R++ S+V+ G+ V K+L+ D+ K + Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRISHPSEVLSVGEEVKAKILEVDEENKRV 628 Query: 684 KLSMK 688 LS+K Sbjct: 629 SLSIK 633 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + + +V + +FGAF+ G DGL+H+SQ+S V D++K+G+ + VK++ D Sbjct: 478 VGDVLEAEVKRFTNFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKGEMIEVKIIALD 536 Query: 679 DRGKIKLSM 687 K KLS+ Sbjct: 537 KENK-KLSL 544 >gi|152977194|ref|YP_001376711.1| general stress protein 13 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025946|gb|ABS23716.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98] Length = 133 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D + Sbjct: 29 IVKGKVTGIQDYGAFVALDDETQGLVHISEITNGYVKDVHDYLKIGDTVEVKVLSVDEEH 88 Query: 681 GKIKLSMKVVDQNTGKPIV 699 K+ LS+K + GK +V Sbjct: 89 KKMSLSLKAAKRKQGKVLV 107 >gi|145638523|ref|ZP_01794132.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|145272118|gb|EDK12026.1| transcription elongation factor GreB [Haemophilus influenzae PittII] gi|309750027|gb|ADO80011.1| Probable transcription accessory protein Tex [Haemophilus influenzae R2866] Length = 770 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622 G+V Q AK ID+ + E+E E + ITD+ + I Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681 +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+L+ D R Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVLRK 713 Query: 682 KIKLSMKVVD---QNTGK 696 +I L+M++ + +N GK Sbjct: 714 RIALTMRLDESAVKNDGK 731 >gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117] gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117] Length = 491 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 11/102 (10%) Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQL 652 S A +E + +RS +NK+ KGQV +++FGAFV G DGLVH+S+L Sbjct: 189 SRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSEL 243 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 S + + S+VV+ G V V++L+ D DR ++ LS+K ++ Sbjct: 244 SWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 >gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN] gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN] Length = 409 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+++ + + +G+V ++ +FGAF+ G DGLVH+S++S + V K SDV Sbjct: 189 EAAKKIFSELA----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDV 243 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ G V VK+L+ D +R +I LS+K Sbjct: 244 LEVGQDVKVKVLNVDPERERISLSIK 269 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V+ + G V ++ FGAFV +GLVHISQ+S + +A +DV+K G V VK+++ D Sbjct: 285 VDTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVD 344 Query: 679 -DRGKIKLSMKVVDQ 692 +R ++ LS+K +++ Sbjct: 345 PERQRLGLSIKALEE 359 >gi|205371987|ref|ZP_03224805.1| hypothetical protein Bcoam_00456 [Bacillus coahuilensis m4-4] Length = 152 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV + GLVHIS+++ V +D +K GD V VK+L+ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVTVKVLNV 63 Query: 678 DDRGKIKLSM-KVVDQ 692 + GKI LS+ K VD+ Sbjct: 64 ESDGKIGLSIRKAVDK 79 >gi|110589224|gb|ABG77121.1| 30S ribosomal subunit protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 283 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 525 KRGRLHILNEM-----SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579 +R R IL+ S+V S L + + R + P +R+ + GK + V Sbjct: 24 RRSRQKILSTAASMARSRVASPLSLAISARSCRARWWIVRP--VRDTAYLEGKDLEFKVI 81 Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 + + N V ++ ++ E E + E + + ++ E ++ KG V + D+GAFV Sbjct: 82 KLDRRRN-----NVVVSRRAVVEQEYSAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDL 135 Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 G DGL+HI+ ++ +RV SDVV+ GD + VK+L FD +R ++ L +K Sbjct: 136 GGI-DGLLHITDMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 184 >gi|332366847|gb|EGJ44588.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1059] Length = 400 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195] Length = 245 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ AG PI+ +A I++G+ K+ IL Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTSPITDFLAAISVGIDKEQG---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D++ +ED +D V T SG +Q + S + L A++G ++++ Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233 Query: 536 SKVLSESRLQL 546 +VL +S +L Sbjct: 234 KEVLGDSLPEL 244 >gi|167746216|ref|ZP_02418343.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662] gi|167654209|gb|EDR98338.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662] Length = 309 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V +M +GAFV GL+HISQ S +R+ ++V+EG V VK+L D Sbjct: 208 VLEGTVENIMPYGAFVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-N 266 Query: 682 KIKLSMKVVDQN 693 KI LSMK ++++ Sbjct: 267 KISLSMKALEES 278 >gi|52425531|ref|YP_088668.1| 30S ribosomal protein S1 [Mannheimia succiniciproducens MBEL55E] gi|52307583|gb|AAU38083.1| RpsA protein [Mannheimia succiniciproducens MBEL55E] Length = 549 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 6/87 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 EILANLAEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + VK+L FD DR ++ L +K + Q+ Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I V G+V + D+G FV Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAQNHPVGSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642] gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY] gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5] gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis] gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis] gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5] Length = 245 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ AG PI+ +A I++G+ K+ IL Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D++ +ED +D V T SG +Q + S + L A++G ++++ Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233 Query: 536 SKVLSESRLQL 546 +VL +S +L Sbjct: 234 KEVLGDSLPEL 244 >gi|315633973|ref|ZP_07889262.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393] gi|315477223|gb|EFU67966.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393] Length = 548 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++++ EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 D + VK+L FD DR ++ L +K + Q+ Sbjct: 239 DEIIVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ VK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEIIVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|167947479|ref|ZP_02534553.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 222 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 V ++ ++ E E + E + + ++ E ++ KG V + D+GAFV G DGL+HI+ Sbjct: 27 NNVVVSRRAVVEQEYSAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDLGGI-DGLLHIT 84 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ +RV SDVV+ GD + VK+L FD +R ++ L +K Sbjct: 85 DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 123 >gi|332295332|ref|YP_004437255.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM 14796] gi|332178435|gb|AEE14124.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM 14796] Length = 113 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 Y+G V+ FGAFV GLVHIS++S + V V+K+GD + VK+L + G Sbjct: 9 FYEGVVIGTAKFGAFVELPSGEVGLVHISEVSDDYVKDVDTVIKKGDKIRVKVLSIKNDG 68 Query: 682 KIKLSMK 688 KI+LS+K Sbjct: 69 KIELSIK 75 >gi|327438483|dbj|BAK14848.1| transcriptional accessory protein [Solibacillus silvestris StLB046] Length = 723 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L RV DVV GD TVWV+ ++ ++G Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQKGRVKHPLDVVSLGDIVTVWVEKVEA-NKG 708 Query: 682 KIKLSM 687 +I L+M Sbjct: 709 RISLTM 714 >gi|291542882|emb|CBL15992.1| Predicted RNA binding protein (contains ribosomal protein S1 domain) [Ruminococcus bromii L2-63] Length = 163 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V + FGAFV ++ G+VHIS+++ + + SD VK G V VK+L Sbjct: 4 EVGMILEGKVSGITKFGAFVDLPDSKTGMVHISEVAPTFINEISDYVKVGQEVKVKVLAL 63 Query: 678 DDRGKIKLSMK 688 +D GKI LSMK Sbjct: 64 ND-GKISLSMK 73 >gi|227355092|ref|ZP_03839503.1| transcription accessory protein [Proteus mirabilis ATCC 29906] gi|227164879|gb|EEI49726.1| transcription accessory protein [Proteus mirabilis ATCC 29906] Length = 777 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + V VVK GD V VK+L+ D R Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKTGDIVKVKVLEVDLPR 711 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 712 KRIALTMRL 720 >gi|148379766|ref|YP_001254307.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum A str. ATCC 3502] gi|153931983|ref|YP_001384064.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A str. ATCC 19397] gi|148289250|emb|CAL83346.1| Composite protein include: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (N-terminus) and an RNA-associated domain (C-terminus) [Clostridium botulinum A str. ATCC 3502] gi|152928027|gb|ABS33527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A str. ATCC 19397] Length = 638 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + + +G+V + DFGAF+ G DGL+H+S++S RV K D +K GD + V +LD Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + K+ LS+K + Q+ K + Sbjct: 536 DKENKKLALSIKKLIQDPWKSV 557 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|77163718|ref|YP_342243.1| 30S ribosomal protein S1 [Nitrosococcus oceani ATCC 19707] gi|76882032|gb|ABA56713.1| SSU ribosomal protein S1P [Nitrosococcus oceani ATCC 19707] Length = 561 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE A RE + S E K KG V + D+GAFV G DGL+HI+ +S +R+ Sbjct: 176 AEYSAEREALLSSL---EEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 S+VV GD + V++L FD +R ++ L +K + ++ K + Sbjct: 232 SEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDL 270 Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V V D+G FV +GLVH+S++ T + S +V+ G+ V V +LD D +R + Sbjct: 282 GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRR 341 Query: 683 IKLSMK 688 I L MK Sbjct: 342 ISLGMK 347 Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG FV G DGLVH+S +S A +++ K+GD V +L D +R Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 426 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++ + Sbjct: 427 ERISLGVKQLEDD 439 >gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1] Length = 254 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPIT 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + SG Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGSG 209 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220 +++ +SG+ D V + E + +++ + + C + +A S+ Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSE 248 >gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827] gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827] Length = 495 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N++ KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 209 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 267 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D +R ++ LS+K ++ Sbjct: 268 VLDVDMERERVSLSLKATQED 288 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV+ GD V VK++D D Sbjct: 299 IGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDID 358 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 359 LDRRRISLSLKQANE 373 >gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] Length = 238 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R R ++ +R +S + G+L+ GS L GDT +V TL +E+ L G R Sbjct: 1 MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATL----EERLPPWLKGQGR 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT E +R A + ++ G RL R++ V + + Sbjct: 57 GWVTAEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + G+ +AL D +P+ + VA I+ G + +G + L Sbjct: 117 DVLQADGGTRTAAITGAWVALHDCLNWMYQRSMLKTIPLKENVAAISCG-IHEGTPVLDL 175 Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527 D + D +F + GT GI +Q + S++ ++ L A++G Sbjct: 176 -DYAEDSKAETDANFVMTGT-GGIVEIQGTAEKTPFSQDELLSLLALARKG 224 >gi|310765657|gb|ADP10607.1| putative transcriptional accessory protein [Erwinia sp. Ejp617] Length = 775 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 26/254 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR++ +R I+ + G+ + GS L GDT+ +V T+ +++ + G + Sbjct: 1 MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATV----EDRVPPFMKGQGK 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y+ LP AT E +R G R + RL RA+ V+ A T+ + Sbjct: 57 GWVTAEYSMLPRATQSRNQREAAR-GKLGGRTMEIQRLIGRALRSVVDLQALGERTITLD 115 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + ++ G+ +AL A PI+ +A +++G+V +G + Sbjct: 116 CDVIQADGGTRTTSITGAFIALAIAVDKLAEKASFKSYPITDYLASVSVGVV-NGSPVL- 173 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534 D++ DED +D V T +G +Q + S + + L A+ G ++ + Sbjct: 174 --DLNYDEDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGK 231 Query: 535 MSKVLSESRLQLGE 548 +VL ++ ++GE Sbjct: 232 QREVLGQAGARIGE 245 >gi|294101537|ref|YP_003553395.1| Tex-like protein protein-like protein [Aminobacterium colombiense DSM 12261] gi|293616517|gb|ADE56671.1| Tex-like protein protein-like protein [Aminobacterium colombiense DSM 12261] Length = 718 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 613 ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 ITD+ + K + G + V FGAFV +DGLVHIS LS + ++ VV G V Sbjct: 633 ITDISHLKKGMVLPGIITNVTAFGAFVDIGVHQDGLVHISALSDKYISSPHAVVSPGQQV 692 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 V ++D D DR +I LSMK D Sbjct: 693 KVIVMDIDMDRKRISLSMKTSD 714 >gi|257898342|ref|ZP_05677995.1| RNA binding protein S1 [Enterococcus faecium Com15] gi|257836254|gb|EEV61328.1| RNA binding protein S1 [Enterococcus faecium Com15] Length = 726 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V +DFGAFV +DGLVHIS+LS + V +DVV GD TVW++ +D +G+ Sbjct: 657 GTVRNAIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928] gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD ++VK++D D Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPEQVVNVGDEIFVKVIDID 354 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 355 LDRRRISLSLKQANE 369 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 212 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 270 Query: 680 RGKIKLSMK 688 R ++ LS+K Sbjct: 271 RERVSLSLK 279 >gi|16077131|ref|NP_387944.1| hypothetical protein BSU00630 [Bacillus subtilis subsp. subtilis str. 168] gi|221307873|ref|ZP_03589720.1| hypothetical protein Bsubs1_00320 [Bacillus subtilis subsp. subtilis str. 168] gi|221312195|ref|ZP_03594000.1| hypothetical protein BsubsN3_00320 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317128|ref|ZP_03598422.1| hypothetical protein BsubsJ_00320 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321391|ref|ZP_03602685.1| hypothetical protein BsubsS_00320 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329565|ref|ZP_06872051.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672762|ref|YP_003864433.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp. spizizenii str. W23] gi|321313733|ref|YP_004206020.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5] gi|586889|sp|P37560|YABR_BACSU RecName: Full=Uncharacterized protein yabR gi|385178|gb|AAB38380.1| unknown [Bacillus subtilis] gi|467452|dbj|BAA05298.1| unknown [Bacillus subtilis] gi|2632330|emb|CAB11839.1| putative RNA degradation protein; polyribonucleotide nucleotidyltransferase or phosphorylase [Bacillus subtilis subsp. subtilis str. 168] gi|291482435|dbj|BAI83510.1| hypothetical protein BSNT_00104 [Bacillus subtilis subsp. natto BEST195] gi|296153308|gb|EFG94171.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411005|gb|ADM36123.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp. spizizenii str. W23] gi|320020007|gb|ADV94993.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5] Length = 128 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G++ + +FGAFV G GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161] gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818] gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900] gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900] gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818] Length = 248 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|227833405|ref|YP_002835112.1| putative transcriptional accessory protein [Corynebacterium aurimucosum ATCC 700975] gi|262184393|ref|ZP_06043814.1| putative transcriptional accessory protein [Corynebacterium aurimucosum ATCC 700975] gi|227454421|gb|ACP33174.1| putative transcriptional accessory protein [Corynebacterium aurimucosum ATCC 700975] Length = 759 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAF+ +DGLVH+S +S + V+ DVV+ G V VK+++ D +R Sbjct: 643 ILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHKFVSDPHDVVRSGQVVKVKVMEVDVER 702 Query: 681 GKIKLSMKVVDQNTGKP 697 +I LS++ +D GKP Sbjct: 703 QRIGLSLR-LDDEPGKP 718 >gi|259910055|ref|YP_002650411.1| putative transcriptional accessory protein [Erwinia pyrifoliae Ep1/96] gi|224965677|emb|CAX57209.1| putative transcriptional accessory protein [Erwinia pyrifoliae Ep1/96] gi|283480154|emb|CAY76070.1| Protein yhgF [Erwinia pyrifoliae DSM 12163] Length = 775 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|325186819|emb|CCA21364.1| PREDICTED: hypothetical protein isoform 1 [Albugo laibachii Nc14] Length = 1138 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTER-VAKTSDVVKEGDTVWVK 673 +V +Y G+V +VM+ G FV F G ++GLVH+S L+ R + ++V+ G V VK Sbjct: 168 KVYGVYSGKVSRVMERGVFVEFSVKNGRKEGLVHVSNLTGNRSIEHPKEIVRSGQHVKVK 227 Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699 ++ KI LSM+ VDQ TG+ ++ Sbjct: 228 VISISG-SKILLSMRDVDQKTGRDLL 252 >gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus] Length = 245 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 19/234 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 S + R Y+ +T E R R+ G R+ + Sbjct: 63 ----SRALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPR 118 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALTDLS 174 Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 E+ G +A I ++MD ++ ++ A QA RG +H L Sbjct: 175 HVEEASGSPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARG-VHTL 227 >gi|291619238|ref|YP_003521980.1| YhgF [Pantoea ananatis LMG 20103] gi|291154268|gb|ADD78852.1| YhgF [Pantoea ananatis LMG 20103] Length = 774 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAF+ +DGLVHIS LS + V VVK GD V VK+++ D R Sbjct: 652 VLEGAVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|254293974|ref|YP_003059997.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814] gi|254042505|gb|ACT59300.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814] Length = 736 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHISQL+ + V+ D+VK GD V V +++ D R + Sbjct: 659 EGTVTNVTAFGAFVDIGVHQDGLVHISQLADKFVSDPHDIVKAGDIVNVTVMEVDVQRKR 718 Query: 683 IKLSMK 688 I LSMK Sbjct: 719 IGLSMK 724 >gi|225027342|ref|ZP_03716534.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353] gi|224955344|gb|EEG36553.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353] Length = 241 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + G+V +M +GAFV GLVHISQ++ +R+ ++V+K G V VK+L Sbjct: 133 EAGAVLTGKVESLMPYGAFVDLGNDISGLVHISQIAQKRIESPAEVLKAGQEVNVKVLKV 192 Query: 678 DDRGKIKLSMKVVDQ 692 ++ GKI LSMK +++ Sbjct: 193 EN-GKISLSMKALEE 206 >gi|153937572|ref|YP_001387604.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A str. Hall] gi|152933486|gb|ABS38985.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A str. Hall] Length = 638 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + + +G+V + DFGAF+ G DGL+H+S++S RV K D +K GD + V +LD Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + K+ LS+K + Q+ K + Sbjct: 536 DKENKKLALSIKKLIQDPWKSV 557 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|296332843|ref|ZP_06875303.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673189|ref|YP_003864861.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150123|gb|EFG91012.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411433|gb|ADM36552.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 719 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|260424761|ref|ZP_05733199.2| S1 RNA-binding domain protein [Dialister invisus DSM 15470] gi|260403099|gb|EEW96646.1| S1 RNA-binding domain protein [Dialister invisus DSM 15470] Length = 174 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G V + FG FV + GLVHIS+++ E V+ +D +K D V VK++ Sbjct: 4 EVGSIVEGTVTGLAKFGVFVEIADKKIGLVHISEVAGEYVSDVNDYLKLHDKVKVKIISV 63 Query: 678 DDRGKIKLSMK 688 D++GKI LS+K Sbjct: 64 DEKGKIALSIK 74 >gi|257887236|ref|ZP_05666889.1| RNA binding protein S1 [Enterococcus faecium 1,141,733] gi|257823290|gb|EEV50222.1| RNA binding protein S1 [Enterococcus faecium 1,141,733] Length = 726 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682 G V V+DFGAFV +DGLVHIS+LS + V +DVV GD T W++ +D +G+ Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTAWIEQVD-TKKGR 715 Query: 683 IKLSM 687 I L+M Sbjct: 716 ISLTM 720 >gi|160880581|ref|YP_001559549.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] gi|160429247|gb|ABX42810.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium phytofermentans ISDg] Length = 643 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V + G+V ++ +FGAFV D L+H+SQ+S E + K +D +K G V K++DF Sbjct: 559 VGNVVTGRVARMTEFGAFVELEPGVDALLHVSQISKEHIEKPADALKIGQEVTAKVVDFN 618 Query: 678 DDRGKIKLSMK 688 +D KI LS+K Sbjct: 619 NDEKKISLSIK 629 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E+ +++ +V + +G V V DFGAF+ GA DGL+HIS++S R+ V K Sbjct: 464 QELSKALFAKIKVGDVVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIESPKKVFKV 522 Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693 GDTV + D KI LS+K +QN Sbjct: 523 GDTVKAFIKDIQGE-KIALSLKFPEQN 548 >gi|90415942|ref|ZP_01223875.1| S1 RNA binding domain protein [marine gamma proteobacterium HTCC2207] gi|90332316|gb|EAS47513.1| S1 RNA binding domain protein [marine gamma proteobacterium HTCC2207] Length = 800 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I +I D+ + +G V V +FGAFV +DGLVHIS ++ V +VVK Sbjct: 642 KEGIETIKDLAPA-MLLEGVVTNVTNFGAFVDVGVHQDGLVHISAIANRFVKDPHEVVKT 700 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694 GD V VK+++ D R +I LSM++ D+ T Sbjct: 701 GDIVKVKVMEVDVARKRIALSMRMDDEVT 729 >gi|89895001|ref|YP_518488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Desulfitobacterium hafniense Y51] gi|89334449|dbj|BAE84044.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 661 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+VV++ FGAFV D L+HISQLS +RV K DVVK GD V K+++ + +I Sbjct: 561 GKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRI 620 Query: 684 KLSMK 688 LS++ Sbjct: 621 SLSIR 625 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV G DGL+H+S ++ R+ S+ V GD V V++L D ++ Sbjct: 473 VVSGVVKRLAQFGAFVDIGGV-DGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQ 531 Query: 681 GKIKLSMK 688 GKI L +K Sbjct: 532 GKISLGLK 539 >gi|70727502|ref|YP_254418.1| hypothetical protein SH2503 [Staphylococcus haemolyticus JCSC1435] gi|68448228|dbj|BAE05812.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 133 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K +P Sbjct: 64 ADDGKISLSIKKAKDRPRRP 83 >gi|321314149|ref|YP_004206436.1| putative RNA helicase [Bacillus subtilis BSn5] gi|320020423|gb|ADV95409.1| putative RNA helicase [Bacillus subtilis BSn5] Length = 719 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436] gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436] Length = 481 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ + VVK GD +VK++D D Sbjct: 292 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDID 351 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 352 LERRRISLSLKQANE 366 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + ++VV+ GD V V++L+ D Sbjct: 209 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPAEVVEVGDEVTVEVLEVDMS 267 Query: 680 RGKIKLSMK 688 R ++ LS+K Sbjct: 268 RERVSLSLK 276 >gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius] Length = 245 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 24/240 (10%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R + A++G+ + GS+ +G+T+A+ VV G E + S Sbjct: 6 LLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-VRMSRS 63 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ------- 418 + R Y+ +T E RR G + ++H L QT + Sbjct: 64 KTLHDRAVINCQYSMATFSTAE------RKRRPHGDRKSTEMSLH--LKQTFEAAVLTNL 115 Query: 419 FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 +P + + I +I +SDG + A V ++LA++DAG+P+ V G V D L+ Sbjct: 116 YPRSQIDIYVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFV----DETPLA 171 Query: 478 DISGDEDHLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+ E+ G +A G I +QMD ++ ++ A A +G +L+++ Sbjct: 172 DLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQV 231 >gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S] gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003] gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] Length = 248 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted) [Schizosaccharomyces pombe 972h-] gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName: Full=Ribosomal RNA-processing protein 41 gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted) [Schizosaccharomyces pombe] Length = 242 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 13/233 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R+ ++G+ +GS+ G+T+ + +V E + S + R Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVD---GPSEPVIKSKARADR 68 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 + N +T +V + RR I LA + + QT +P + + + + Sbjct: 69 TFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 + DG+ + + ++LAL+DAG+P+ V G+V+ ++L S +E L + Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD---MLLDLNSLEESALSWLT 184 Query: 491 FKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSES 542 V G + MQ++ + E++M MA+ G HI N M + +S Sbjct: 185 VAVLGNIKKVVYMQLETSMHLDYLESVMNMAIA----GSEHIYNTMQSAVRQS 233 >gi|83745880|ref|ZP_00942937.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia solanacearum UW551] gi|83727570|gb|EAP74691.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia solanacearum UW551] Length = 1257 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 1143 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 1202 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ D+ P Sbjct: 1203 NRIGLTMRLTDEPGQAP 1219 >gi|219669404|ref|YP_002459839.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Desulfitobacterium hafniense DCB-2] gi|219539664|gb|ACL21403.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfitobacterium hafniense DCB-2] Length = 661 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+VV++ FGAFV D L+HISQLS +RV K DVVK GD V K+++ + +I Sbjct: 561 GKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRI 620 Query: 684 KLSMK 688 LS++ Sbjct: 621 SLSIR 625 >gi|306833370|ref|ZP_07466497.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338] gi|304424140|gb|EFM27279.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338] Length = 398 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD + Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLDVNAAA 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I KG+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 >gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319] gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319] Length = 248 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ +R +S L+ GS L GDT+ I ++ D++ + G + Sbjct: 1 MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G + R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++ A +PI +A ++G+ G++ I+ Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGI--HGENSIL- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ +ED +D + T SG Sbjct: 174 -DLNYEEDSTAEVDMNIVMTGSG 195 >gi|291482888|dbj|BAI83963.1| hypothetical protein BSNT_00811 [Bacillus subtilis subsp. natto BEST195] Length = 719 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|292489911|ref|YP_003532801.1| protein YhgF [Erwinia amylovora CFBP1430] gi|292900947|ref|YP_003540316.1| transcription accessory protein [Erwinia amylovora ATCC 49946] gi|291200795|emb|CBJ47929.1| putative transcription accessory protein [Erwinia amylovora ATCC 49946] gi|291555348|emb|CBA23713.1| Protein yhgF [Erwinia amylovora CFBP1430] Length = 777 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|289449430|ref|YP_003475339.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183977|gb|ADC90402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 704 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 + I G+VV++ FGAFV D L HISQ+ST R+AK S+V+KEG V ++++ Sbjct: 601 IGTIVHGKVVRMFPFGAFVEIADGVDALCHISQISTARLAKPSEVLKEGMEVDARVMEVS 660 Query: 678 DDRGKIKLSMKVV 690 +++ +I +S+K V Sbjct: 661 NEQRRISISIKEV 673 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V + DFGAFV G DGLVH+S+LS R+ S+V+K GD + V + +FD Sbjct: 516 VGDIREGVVRSLTDFGAFVDI-GGVDGLVHVSELSWNRIKHPSEVIKVGDHIQVYVKEFD 574 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I L K ++ + Sbjct: 575 PERKRISLGYKRIEDD 590 >gi|119962080|ref|YP_946901.1| transcriptional accessory protein [Arthrobacter aurescens TC1] gi|119948939|gb|ABM07850.1| putative transcriptional accessory protein [Arthrobacter aurescens TC1] Length = 818 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ + I +G V V FGAFV +DGLVH+S LS + V+ ++VK G Sbjct: 648 EGIEKISDL-KPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSG 706 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+L+ D +R +I L++++ D+ Sbjct: 707 QVVRVKVLEADPERKRISLTLRLDDE 732 >gi|50812188|ref|NP_388359.2| RNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221308302|ref|ZP_03590149.1| hypothetical protein Bsubs1_02703 [Bacillus subtilis subsp. subtilis str. 168] gi|221312624|ref|ZP_03594429.1| hypothetical protein BsubsN3_02679 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317547|ref|ZP_03598841.1| hypothetical protein BsubsJ_02638 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321823|ref|ZP_03603117.1| hypothetical protein BsubsS_02709 [Bacillus subtilis subsp. subtilis str. SMY] gi|81341845|sp|O31489|YDCI_BACSU RecName: Full=Uncharacterized protein ydcI gi|32468703|emb|CAB12285.2| putative RNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 719 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|312174095|emb|CBX82348.1| Protein yhgF [Erwinia amylovora ATCC BAA-2158] Length = 777 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain) [Burkholderia rhizoxinica HKI 454] gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain) [Burkholderia rhizoxinica HKI 454] Length = 801 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++ D+ I +G V V FGAF+ +DGLVH+S +ST+ V +VVK Sbjct: 667 REGVETLADL-SPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFVKDPHEVVKA 725 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 G V VK+L+ D R +I L+M++ D Sbjct: 726 GQVVTVKVLEVDLKRQRISLTMRLSD 751 >gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243] gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1] gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243] gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1] Length = 405 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V K++ FGAF+ + +GLVHIS+++ + + VVK GD V VK+++ + Sbjct: 291 VGTIVDGKVTKIVPFGAFIELGQSIEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEIN 350 Query: 679 -DRGKIKLSMKVVDQNTGKPI 698 +R +I LSMK + G I Sbjct: 351 PERRRISLSMKAAAADLGFEI 371 >gi|121535071|ref|ZP_01666888.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1] gi|121306321|gb|EAX47246.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1] Length = 139 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + +FGAFV G + GLVHIS+++ V D +KE D V VK+L D+RGKI LS++ Sbjct: 16 ITNFGAFVELPGGKVGLVHISEVADVYVRDVKDFLKEQDRVKVKVLSIDERGKIGLSIR 74 >gi|150015374|ref|YP_001307628.1| 30S ribosomal protein S1 [Clostridium beijerinckii NCIMB 8052] gi|149901839|gb|ABR32672.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 384 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 IAS + E E + ++I D + + G V K++ FGAFV G +GL+H+S LS Sbjct: 172 IASRRIIEEEEYNKNKKNIWDNLKEGEKRNGVVKKIVKFGAFVDIGGV-EGLIHLSDLSW 230 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 ERV K D+VKEGD V V + + DR +LS+ Sbjct: 231 ERVNKPEDIVKEGDNVEVFIGNV-DRKNERLSL 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I++G+V+++ FGAFV +GLVHI++++ E +AK SDV++ V VK+L + + Sbjct: 284 IFEGKVIRLTTFGAFVELFDGIEGLVHITEITDEHIAKPSDVLEANQKVKVKVLSVNREE 343 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 344 KRIALSIK 351 >gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337] gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337] Length = 484 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V V K GD V+VK++D D Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 353 LERRRISLSLKQANE 367 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 >gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20] gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505] gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505] Length = 484 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V V K GD V+VK++D D Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 353 LERRRISLSLKQANE 367 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 >gi|302879053|ref|YP_003847617.1| Tex-like protein-like [Gallionella capsiferriformans ES-2] gi|302581842|gb|ADL55853.1| Tex-like protein-like [Gallionella capsiferriformans ES-2] Length = 779 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE I I+D+ + + I +G V V FGAFV +DGLVHIS L+ V VVK Sbjct: 651 REGIEKISDL-QPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKA 709 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKV 689 G V VK+L+ D+ R +I L+M++ Sbjct: 710 GQIVKVKVLEVDEKRKRIALTMRL 733 >gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3] gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4] Length = 254 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWSTILGKVSETS------RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIECGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV 185 +++ +SG D V Sbjct: 199 TDMNVVMSGNGDFV 212 >gi|258515332|ref|YP_003191554.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779037|gb|ACV62931.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum acetoxidans DSM 771] Length = 676 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +VV++ FGAFV +GLVHIS L+ V K DVV EG+ V VK+L D Sbjct: 569 VGAIVAAKVVRLAPFGAFVQLEPGVEGLVHISHLADHHVEKPEDVVSEGEEVNVKVLSVD 628 Query: 679 DRGK-IKLSMKVVDQNTG--KPI 698 + K I+LS+K V + KP+ Sbjct: 629 TQEKRIRLSIKEVTKKVKEEKPV 651 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + +GQ V ++ +FGAFV G DGL+HIS+++ RV S++V+ GD V V Sbjct: 479 LNSLQEGQTVSGIVRRITNFGAFVDIGGV-DGLLHISEMAWYRVTHPSEIVQVGDEVTVM 537 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +L D + KI L +K V N Sbjct: 538 VLKIDRNADKISLGLKQVLAN 558 >gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 710 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGLVHIS++S V S VV GD TVWV +D DR Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|260583466|ref|ZP_05851214.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633] gi|260158092|gb|EEW93160.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633] Length = 407 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G+V ++ +FGAF+ G DGLVH+S++S E V+K SD + G TV K++ D ++ Sbjct: 208 IVTGKVARLTNFGAFIDLGGI-DGLVHVSEISHEHVSKPSDFLAVGQTVEAKVIGLDAEK 266 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 267 GRVSLSIK 274 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +IT+ V+ G V + FGAFV +GLVHISQ++ + +A +V++ G V Sbjct: 283 NITERAAVDSTLVGTVKRFAAFGAFVELFPGVEGLVHISQIAHKHIATPQEVLQVGQEVS 342 Query: 672 VKLLDFDDRGK-IKLSMKVVDQ 692 VK+L+ ++ K I LS+K +++ Sbjct: 343 VKVLEVNEAEKRISLSIKALEE 364 >gi|69245447|ref|ZP_00603442.1| RNA binding S1 [Enterococcus faecium DO] gi|257879858|ref|ZP_05659511.1| RNA binding protein S1 [Enterococcus faecium 1,230,933] gi|257882584|ref|ZP_05662237.1| RNA binding protein S1 [Enterococcus faecium 1,231,502] gi|257886018|ref|ZP_05665671.1| RNA binding protein S1 [Enterococcus faecium 1,231,501] gi|257891699|ref|ZP_05671352.1| RNA binding protein S1 [Enterococcus faecium 1,231,410] gi|257894174|ref|ZP_05673827.1| RNA binding protein S1 [Enterococcus faecium 1,231,408] gi|258614286|ref|ZP_05712056.1| hypothetical protein EfaeD_01107 [Enterococcus faecium DO] gi|260559531|ref|ZP_05831712.1| RNA binding protein S1 [Enterococcus faecium C68] gi|261206682|ref|ZP_05921380.1| RNA binding protein S1 [Enterococcus faecium TC 6] gi|289565043|ref|ZP_06445497.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF] gi|293553696|ref|ZP_06674320.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium E1039] gi|293563197|ref|ZP_06677653.1| S1-type RNA-binding domain [Enterococcus faecium E1162] gi|293570119|ref|ZP_06681199.1| S1-type RNA-binding protein [Enterococcus faecium E1071] gi|294614896|ref|ZP_06694787.1| S1-type RNA-binding protein [Enterococcus faecium E1636] gi|294618632|ref|ZP_06698171.1| RNA-binding S1 domain protein [Enterococcus faecium E1679] gi|294623708|ref|ZP_06702541.1| RNA-binding S1 domain protein [Enterococcus faecium U0317] gi|314938211|ref|ZP_07845511.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04] gi|314943106|ref|ZP_07849905.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C] gi|314949303|ref|ZP_07852646.1| S1 RNA binding domain protein [Enterococcus faecium TX0082] gi|314952236|ref|ZP_07855251.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A] gi|314992094|ref|ZP_07857544.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B] gi|314996277|ref|ZP_07861333.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01] gi|68195829|gb|EAN10265.1| RNA binding S1 [Enterococcus faecium DO] gi|257814086|gb|EEV42844.1| RNA binding protein S1 [Enterococcus faecium 1,230,933] gi|257818242|gb|EEV45570.1| RNA binding protein S1 [Enterococcus faecium 1,231,502] gi|257821874|gb|EEV49004.1| RNA binding protein S1 [Enterococcus faecium 1,231,501] gi|257828059|gb|EEV54685.1| RNA binding protein S1 [Enterococcus faecium 1,231,410] gi|257830553|gb|EEV57160.1| RNA binding protein S1 [Enterococcus faecium 1,231,408] gi|260074630|gb|EEW62951.1| RNA binding protein S1 [Enterococcus faecium C68] gi|260079175|gb|EEW66868.1| RNA binding protein S1 [Enterococcus faecium TC 6] gi|289163250|gb|EFD11096.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF] gi|291587491|gb|EFF19375.1| S1-type RNA-binding protein [Enterococcus faecium E1071] gi|291592182|gb|EFF23800.1| S1-type RNA-binding protein [Enterococcus faecium E1636] gi|291595151|gb|EFF26489.1| RNA-binding S1 domain protein [Enterococcus faecium E1679] gi|291596923|gb|EFF28141.1| RNA-binding S1 domain protein [Enterococcus faecium U0317] gi|291602271|gb|EFF32499.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium E1039] gi|291604847|gb|EFF34325.1| S1-type RNA-binding domain [Enterococcus faecium E1162] gi|313589521|gb|EFR68366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01] gi|313593308|gb|EFR72153.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B] gi|313595631|gb|EFR74476.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A] gi|313598165|gb|EFR77010.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C] gi|313642407|gb|EFS06987.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04] gi|313644309|gb|EFS08889.1| S1 RNA binding domain protein [Enterococcus faecium TX0082] Length = 156 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAF+ + GLVHIS++S V DV+ GD V VK++ Sbjct: 4 EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63 Query: 678 DDRGKIKLSMK 688 +D GKI LS++ Sbjct: 64 NDDGKIGLSIR 74 >gi|295092746|emb|CBK78853.1| Transcriptional accessory protein [Clostridium cf. saccharolyticum K10] Length = 713 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFG FV +DGLVHISQ++ + +VV GD V VK+LD + ++ Sbjct: 645 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKVLDVNLEK 704 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 705 KRIGLTMKL 713 >gi|289551693|ref|YP_003472597.1| ribosomal protein S1 domain-containing RNA binding protein [Staphylococcus lugdunensis HKU09-01] gi|315660324|ref|ZP_07913177.1| general stress protein 13 [Staphylococcus lugdunensis M23590] gi|289181224|gb|ADC88469.1| ribosomal protein S1 domain-containing RNA binding protein [Staphylococcus lugdunensis HKU09-01] gi|315494613|gb|EFU82955.1| general stress protein 13 [Staphylococcus lugdunensis M23590] Length = 132 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSIGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K +P Sbjct: 64 ADDGKISLSIKKAKDRPRRP 83 >gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM 17836] gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836] Length = 492 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + ++VV+ G V V++LD D D Sbjct: 218 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPTEVVEVGQEVTVEVLDVDMD 276 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 277 RERVSLSLKATQED 290 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVHIS+L+ V VV+ D V VK++D Sbjct: 300 QMGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 359 Query: 678 D-DRGKIKLSMK 688 D +R +I LS+K Sbjct: 360 DLERRRISLSLK 371 >gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484] Length = 510 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD V+VK++D D Sbjct: 316 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDID 375 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 376 LERRRISLSLKQANE 390 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A +E + +RS + ++ G V +++FGAFV G DGLVH+S+LS + Sbjct: 209 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 267 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 268 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 305 >gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 710 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGLVHIS++S V S VV GD TVWV +D DR Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|300173207|ref|YP_003772373.1| transcription accessory protein [Leuconostoc gasicomitatum LMG 18811] gi|299887586|emb|CBL91554.1| transcription accessory protein [Leuconostoc gasicomitatum LMG 18811] Length = 731 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G V V+DFGAFV DGLVHIS+L+ RV S+VV GD V V ++D D+ R + Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKAPSEVVAVGDIVDVWVVDIDEKRQR 718 Query: 683 IKLSM 687 I L+M Sbjct: 719 IGLTM 723 >gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567] gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931] gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567] gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931] Length = 486 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 11/123 (8%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-----VM 631 I +Q AK+ D + S A +E + +RS +N++ KGQV + ++ Sbjct: 162 IGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNQLEKGQVREGVVSSIV 217 Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D DR ++ LS+K Sbjct: 218 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKAT 276 Query: 691 DQN 693 ++ Sbjct: 277 QED 279 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV G+ ++VK++D D Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLAEQVVSVGEELFVKIIDID 349 Query: 679 -DRGKIKLSMKVVDQ 692 DR +I LS+K ++ Sbjct: 350 MDRRRISLSLKQANE 364 >gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 710 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGLVHIS++S V S VV GD TVWV +D DR Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174] gi|149831894|gb|EDM86980.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174] Length = 301 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 9/94 (9%) Query: 603 IEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I +A+E++R+ + NK+ +G V + +GAFV+ GLVHISQ+ Sbjct: 171 ILSAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVNLGNGLSGLVHISQICE 230 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 +R+ K S+V+ GDTV VK+ D GK+ LS+K Sbjct: 231 KRIKKPSEVLAVGDTVKVKVTAIKD-GKLSLSIK 263 >gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27] gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27] Length = 473 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G V KVM+FG FV +GL H+S+L + T DV GD V+VK++D D Sbjct: 286 IGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPGDEVFVKIVDID 345 Query: 679 -DRGKIKLSMK 688 D +I LS+K Sbjct: 346 IDSRRISLSLK 356 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V ++ FGAFV G DGLVHIS++S + V + S+V+K G+ V V++L+ D + Sbjct: 203 QVRKGTVSSIVSFGAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSE 261 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS++ ++ Sbjct: 262 RHRVSLSLRATQED 275 >gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] Length = 256 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR+ + +R I + L+ GS L GDT+ I ++ DE+ + G + Sbjct: 1 MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASI----DERVPPFMRGQGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ A T+ + Sbjct: 57 GWITAEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL---MD--------AGVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ MD A PI+ +A ++G++K+ + L Sbjct: 117 DVIQADGGTRTASITGAFVAMSQAMDKLYSSKKLAHYPINDFLAATSVGILKNKQAAVDL 176 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + I ED +D V T SG Sbjct: 177 NYI---EDSSAEVDMNVVMTGSG 196 >gi|255525217|ref|ZP_05392159.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium carboxidivorans P7] gi|296188737|ref|ZP_06857124.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium carboxidivorans P7] gi|255511080|gb|EET87378.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium carboxidivorans P7] gi|296046664|gb|EFG86111.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium carboxidivorans P7] Length = 641 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+VV+ +FGAFV D LVHISQ+S +R+ K D +K G+ + K+L+ + + KI Sbjct: 572 GKVVRFANFGAFVELEPGVDALVHISQISHKRINKPEDALKIGEEIKAKILEVNKENKKI 631 Query: 684 KLSMKVVDQ 692 LS+K VD+ Sbjct: 632 GLSIKEVDE 640 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 9/84 (10%) Query: 603 IEAAREMIRSITDVPE--------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 + + RE+++S +V E + + +G+V ++ +FGAFV G DGL+H+S++S Sbjct: 452 VASRRELLKSEKEVKEEGTWNSLEKDTVVEGEVKRLTNFGAFVDVQGV-DGLLHVSEISW 510 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD 678 RV K D +K G V V +LD D Sbjct: 511 GRVEKPEDSLKIGKKVKVYILDID 534 >gi|238788975|ref|ZP_04632765.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC 33641] gi|238723002|gb|EEQ14652.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC 33641] Length = 790 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEIDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|301064798|ref|ZP_07205172.1| putative ribosomal protein S1 [delta proteobacterium NaphS2] gi|300441092|gb|EFK05483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2] Length = 493 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG- 681 G+V K+M FGAFV +G+VHIS+L RV K SDV++ G+TV VK+L D++ Sbjct: 214 GRVTKLMPFGAFVELTPGVEGMVHISELGWSRVEKPSDVLQVGETVMVKVLGVAPDEKSK 273 Query: 682 --KIKLSMK 688 KI LS+K Sbjct: 274 QMKISLSIK 282 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 2/95 (2%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL+ + A + S+TD + + +G+V + FGAFV +GLVHIS++S +RV Sbjct: 278 SLSIKQTADDPWLSVTDRFKEGDVVEGKVSRCAPFGAFVEIEPGIEGLVHISEMSYRKRV 337 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 K DVV GD + V + + D R +I LSM+ V+ Sbjct: 338 LKAEDVVSPGDLIQVLIKEIDSSRQRISLSMRDVE 372 >gi|262364253|gb|ACY60810.1| hypothetical protein YPD8_0120 [Yersinia pestis D182038] Length = 506 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 367 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 426 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 427 KRIALTMRLDEQ 438 >gi|297170836|gb|ADI21855.1| hypothetical protein [uncultured verrucomicrobium HF0130_25O04] Length = 195 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + KG+V +V +GAFV DGLVHISQ+S +R+ K D + EGD V +++ D Sbjct: 83 VIKGKVXRVAGYGAFVELDHDIDGLVHISQISEDRIEKIKDYLNEGDEVSARVIKIDKEX 142 Query: 682 K-IKLSMKVVD 691 + I LS+K D Sbjct: 143 RXIGLSIKXAD 153 >gi|291550296|emb|CBL26558.1| Ribosomal protein S1 [Ruminococcus torques L2-14] Length = 358 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D + Sbjct: 276 VGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLAIGQEITAKIVDLN 335 Query: 679 D-RGKIKLSMKVVDQNTGK 696 + KI LSMK ++ + + Sbjct: 336 EAEKKISLSMKALEADNAE 354 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 +G V V DFGAFV G DGL+HIS++S RV V GDT+ V + D D KI Sbjct: 198 EGTVKNVTDFGAFVDLGGV-DGLLHISEMSWGRVDNPKKVFHVGDTLKVLVKDIHDT-KI 255 Query: 684 KLSMKVVDQN 693 LS+K + N Sbjct: 256 ALSLKFPETN 265 >gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211] gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211] Length = 709 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ ++ + +G V V+DFGAFV DGL+HIS+LS V S VV Sbjct: 622 RQDVLDIKDL-QIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSV 680 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV LD +R K+ LS+ Sbjct: 681 GDLVTVWVDKLDI-EREKVNLSL 702 >gi|288905182|ref|YP_003430404.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34] gi|306831252|ref|ZP_07464412.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978156|ref|YP_004287872.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731908|emb|CBI13473.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34] gi|304426488|gb|EFM29600.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178084|emb|CBZ48128.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 398 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD + Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLDVNAAA 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I KG+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 >gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18] gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18] Length = 756 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + +I D+ E I +G V V FGAFV +DGLVH+SQLS + +D VK Sbjct: 635 RDDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRYMKDPNDAVKV 693 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G+ V VK+L D +R +I LS+K Sbjct: 694 GEIVKVKVLSADPERKRISLSIK 716 >gi|283798764|ref|ZP_06347917.1| protein YhgF [Clostridium sp. M62/1] gi|291073448|gb|EFE10812.1| protein YhgF [Clostridium sp. M62/1] Length = 713 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFG FV +DGLVHISQ++ + +VV GD V VK+LD + ++ Sbjct: 645 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKVLDVNLEK 704 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 705 KRIGLTMKL 713 >gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist] gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist] Length = 473 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G V KVM+FG FV +GL H+S+L + T DV GD V+VK++D D Sbjct: 286 IGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPGDEVFVKIVDID 345 Query: 679 -DRGKIKLSMK 688 D +I LS+K Sbjct: 346 IDSRRISLSLK 356 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V ++ FGAFV G DGLVHIS++S + V + S+V+K G+ V V++L+ D + Sbjct: 203 QVRKGTVSSIVSFGAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSE 261 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS++ ++ Sbjct: 262 RHRVSLSLRATQED 275 >gi|332306876|ref|YP_004434727.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 579 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + + ++ E +++ Sbjct: 163 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 217 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 218 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 275 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 276 RVSLGMK 282 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G V + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 297 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 355 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 356 EIDEERRRISLGLKQCKPN 374 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V+E GD + +L D +R Sbjct: 391 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 448 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 449 ERISLGVKQIEED 461 >gi|255535011|ref|YP_003095382.1| 30S ribosomal protein S1 [Flavobacteriaceae bacterium 3519-10] gi|255341207|gb|ACU07320.1| SSU ribosomal protein S1p [Flavobacteriaceae bacterium 3519-10] Length = 597 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 595 IASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 + S A IEA E R I E ++ +G V + +G FV G DGL+HI+ LS Sbjct: 197 VVVSHKALIEADLEGQKREIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLS 255 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688 RV S+++ +G+TV V +LDFDD + +I+L MK Sbjct: 256 WSRVNHPSEILSDGETVKVVILDFDDEKTRIQLGMK 291 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680 KG+VV + D+GAFV +GL+H+S++S + + D VK GD V ++L D DR Sbjct: 312 KGKVVVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREDR 371 Query: 681 GKIKLSMKVVDQN 693 KI L MK + Q+ Sbjct: 372 -KISLGMKQLSQD 383 >gi|257054903|ref|YP_003132735.1| transcriptional accessory protein [Saccharomonospora viridis DSM 43017] gi|256584775|gb|ACU95908.1| transcriptional accessory protein [Saccharomonospora viridis DSM 43017] Length = 775 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVH+S +S V+ DVVK GD V VK+LD D R + Sbjct: 651 EGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVKVLDVDVPRKR 710 Query: 683 IKLSMKVVD 691 I L++++ D Sbjct: 711 ISLTLRLDD 719 >gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC 43970] gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC 43970] Length = 788 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|312869842|ref|ZP_07729983.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3] gi|311094621|gb|EFQ52924.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3] Length = 165 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 41/73 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV + GLVHISQ+S + + DV+ GDTV K+ Sbjct: 4 EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRV 63 Query: 678 DDRGKIKLSMKVV 690 D GKI LSMK Sbjct: 64 GDDGKIALSMKAA 76 >gi|292492661|ref|YP_003528100.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4] gi|291581256|gb|ADE15713.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4] Length = 560 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE A RE + S E K KG V + D+GAFV G DGL+HI+ +S +R+ Sbjct: 176 AEYSAEREALLSSL---EEGKTVKGIVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 S+VV GD + V++L FD +R ++ L +K + ++ K + Sbjct: 232 SEVVNIGDEITVQVLKFDKERQRVSLGLKQMGEDPWKDL 270 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 P+ +++ G+V V D+G FV +GLVH+S++ T + S +V+ GD V V +L Sbjct: 275 PDNTRLF-GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKIVQVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L MK N Sbjct: 334 DIDEERRRISLGMKQCQPN 352 Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRGK 682 G++ + DFG FV G DGLVH+S +S +T K+GD V +L D +R + Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWSASGEETIRDYKKGDQVEAVVLAIDPERER 428 Query: 683 IKLSMKVVDQN 693 I L +K ++++ Sbjct: 429 ISLGIKQLEED 439 >gi|293393397|ref|ZP_06637709.1| YhgF like protein [Serratia odorifera DSM 4582] gi|291424134|gb|EFE97351.1| YhgF like protein [Serratia odorifera DSM 4582] Length = 807 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHSVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ +Q P Sbjct: 712 KRIALTMRLDEQPGEGP 728 >gi|288933208|ref|YP_003437267.1| Tex-like protein protein-like protein [Klebsiella variicola At-22] gi|288887937|gb|ADC56255.1| Tex-like protein protein-like protein [Klebsiella variicola At-22] Length = 776 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485] Length = 500 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 +G+V + +G FV RDGLVHIS++S R+ S++V+ GDT VWVK +D D R Sbjct: 107 EGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTVKVWVKSVDLDAR- 165 Query: 682 KIKLSM 687 +I L+M Sbjct: 166 RISLTM 171 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 E RE + S+ +V +I +G + FGAF +DGL+HIS+LS RV K D Sbjct: 197 EVDREKLASL----KVGEIVEGVITGFAPFGAFADIGVGKDGLIHISELSEGRVEKPEDA 252 Query: 664 VKEGDTVWVKLLDFDDRG-KIKLSMK 688 VK G+ K+L+ D G +I LS++ Sbjct: 253 VKVGERYQFKVLEIDGEGTRISLSLR 278 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G V + FGAFV RDGLVHIS L+ RVAK DVVK GD V VK+L Sbjct: 290 EPGQIIEGTVSGIATFGAFVDIGVGRDGLVHISALAPHRVAKVEDVVKVGDKVKVKVLGV 349 Query: 678 DDRGK-IKLSMKVVDQN 693 D + K I L+M++ ++ Sbjct: 350 DPQSKRISLTMRLEEEQ 366 >gi|113972136|ref|YP_735929.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-4] gi|113886820|gb|ABI40872.1| RNA binding S1 domain protein [Shewanella sp. MR-4] Length = 779 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + + VVK GD V VK+++ Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ +DQ+ + Sbjct: 709 VDVERRRIGLSMRLDEAIDQSKAQ 732 >gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus scrofa] Length = 243 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E Sbjct: 6 LLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEASGRAPL 64 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425 R Y+ +TGE R R+ G R+A + + I Sbjct: 65 ---PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDI 121 Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485 ++ ++DG A V ++LA++DAG+P+ V + G V D L+D+S E+ Sbjct: 122 YVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEEA 177 Query: 486 LG--HMDFKVAGTDSGITAMQMDMKI 509 G + + I ++MD ++ Sbjct: 178 AGGPQLALALLPASGQIALLEMDARL 203 >gi|238792873|ref|ZP_04636503.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC 29909] gi|238727727|gb|EEQ19251.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC 29909] Length = 792 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|312958364|ref|ZP_07772885.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6] gi|311287428|gb|EFQ65988.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6] Length = 774 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVDQ 692 ++ LSM++ D+ Sbjct: 711 KRVGLSMRMSDE 722 >gi|296129804|ref|YP_003637054.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109] gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109] Length = 492 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD V+VK++D D Sbjct: 296 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ D D Sbjct: 213 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDFD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|206576501|ref|YP_002236221.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342] gi|206565559|gb|ACI07335.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342] Length = 776 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|251796396|ref|YP_003011127.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] Length = 411 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +G V ++ FGAFV G DGLVH+S+LS + VA DVV EG V VK+L Sbjct: 193 QVGAQLEGTVQRLTPFGAFVDIGGI-DGLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKV 251 Query: 678 DD-RGKIKLSMK 688 D GKI LS+K Sbjct: 252 DPAAGKISLSIK 263 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G V +++ FGAFV +GLVHISQ++ +A +V+KEG V K+LDF+ Sbjct: 279 VGDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFN 338 Query: 679 DRGK-IKLSMKVVDQNTGKP 697 K + LS+K ++ +P Sbjct: 339 PAEKRVSLSIKETEEAPEQP 358 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG ++K+ D A+V DG++ + +LS ++ +D V+ G V +K++ DD + K Sbjct: 26 KGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQVGQEVELKVVSIDDEKEK 85 Query: 683 IKLSMKVVD 691 + LS +++D Sbjct: 86 LVLSKRLID 94 >gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804] gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii] Length = 791 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 8/88 (9%) Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V +N +Y G V++ V +FGAFV +DGLVHIS L+ + V DVV+ G TV Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 VK+L+ D R ++ L+M++ D T +P Sbjct: 721 TVKVLEVDVARKRVALTMRLND--TAQP 746 >gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c] Length = 579 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + + ++ E +++ Sbjct: 163 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 217 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 218 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 275 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 276 RVSLGMK 282 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G V + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 297 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 355 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 356 EIDEERRRISLGLKQCKPN 374 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V+E GD + +L D +R Sbjct: 391 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 448 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 449 ERISLGVKQIEED 461 >gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] gi|32397082|emb|CAD72386.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1] gi|327541012|gb|EGF27567.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47] Length = 560 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%) Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 R+++ + D E V ++KG+V + +FGAFV +GL HIS+L+T RV++ S Sbjct: 423 RDLLENPWDSAESMFAVGSVHKGEVTRTAEFGAFVRLTAGVEGLCHISELATHRVSRVSS 482 Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 VV GD V VK++ FD D K+ LS+K Sbjct: 483 VVNVGDEVDVKIMSFDRDSQKVGLSIKAA 511 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V DFGAFV G DGL+H+S+LS ER+ S+V++EG V V++ Sbjct: 353 EPGDILEGVVRSVRDFGAFVDV-GGLDGLIHVSKLSWERIKHPSEVIEEGQNVKVRVDKI 411 Query: 678 DDR-GKIKLSMKVVDQN 693 D + GK+ L+ + + +N Sbjct: 412 DKQTGKMSLTYRDLLEN 428 >gi|290512012|ref|ZP_06551380.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella sp. 1_1_55] gi|289775802|gb|EFD83802.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella sp. 1_1_55] Length = 776 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|297544051|ref|YP_003676353.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841826|gb|ADH60342.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 712 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFG FV DGLVHIS++S + DVV GD V VK+L+ D +R +I Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLNVDLERNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|238751149|ref|ZP_04612644.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380] gi|238710627|gb|EEQ02850.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380] Length = 793 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|114049369|ref|YP_739919.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-7] gi|113890811|gb|ABI44862.1| RNA binding S1 domain protein [Shewanella sp. MR-7] Length = 779 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + + VVK GD V VK+++ Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ +DQ+ + Sbjct: 709 VDVERRRIGLSMRLDEAIDQSKAQ 732 >gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386] gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386] Length = 484 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V V K GD V+VK++D D Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 353 LERRRISLSLKQANE 367 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 >gi|326478233|gb|EGE02243.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Trichophyton equinum CBS 127.97] Length = 1214 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 19/120 (15%) Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639 ++G N DDD R + + D P + KIY G+V + DFG F Sbjct: 219 RSGRNYNYDDD--------------FKRPPVSELDDRPILFKIYDGRVTGIKDFGVLPEF 264 Query: 640 ---CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 G+ GLVH+S + RV SD+V G V VK++ D +I LSMK VDQ +G Sbjct: 265 PFALGSTLGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323 >gi|227552666|ref|ZP_03982715.1| RNA-binding protein [Enterococcus faecium TX1330] gi|257888635|ref|ZP_05668288.1| RNA binding protein S1 [Enterococcus faecium 1,141,733] gi|257897410|ref|ZP_05677063.1| RNA binding protein S1 [Enterococcus faecium Com12] gi|257899970|ref|ZP_05679623.1| RNA binding protein S1 [Enterococcus faecium Com15] gi|293378831|ref|ZP_06624986.1| general stress protein 13 family protein [Enterococcus faecium PC4.1] gi|293571075|ref|ZP_06682116.1| S1-type RNA-binding domain protein [Enterococcus faecium E980] gi|227178195|gb|EEI59167.1| RNA-binding protein [Enterococcus faecium TX1330] gi|257824689|gb|EEV51621.1| RNA binding protein S1 [Enterococcus faecium 1,141,733] gi|257833975|gb|EEV60396.1| RNA binding protein S1 [Enterococcus faecium Com12] gi|257837882|gb|EEV62956.1| RNA binding protein S1 [Enterococcus faecium Com15] gi|291608858|gb|EFF38139.1| S1-type RNA-binding domain protein [Enterococcus faecium E980] gi|292642372|gb|EFF60527.1| general stress protein 13 family protein [Enterococcus faecium PC4.1] Length = 156 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAF+ + GLVHIS++S V DV+ GD V VK++ Sbjct: 4 EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63 Query: 678 DDRGKIKLSMK 688 +D GKI LS++ Sbjct: 64 NDDGKIGLSIR 74 >gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Moorella thermoacetica ATCC 39073] gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella thermoacetica ATCC 39073] Length = 736 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D K+ S A +E E R T + EV ++ KG V ++ +FGAFV G DGL+ Sbjct: 506 DRSKNKVVLSRKAILEEEYEKQRQATWNSLEVGQVRKGIVRRLTNFGAFVDLGGV-DGLL 564 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 H+S++S RV D + EG + VK+L D + GK+ L K Sbjct: 565 HVSEISWGRVEHPRDALSEGQEIEVKILGIDREEGKVSLGRK 606 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G+++++ FGAFV +GLVHISQL+ V K DVV GD + VK+L D Sbjct: 622 VGTIVEGKILRLAPFGAFVEVEPGIEGLVHISQLADRHVDKPEDVVSIGDIIPVKVLGVD 681 Query: 679 DRG-KIKLSMK 688 + ++ LS++ Sbjct: 682 QQAQRMSLSLR 692 >gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J] gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis 0140J] Length = 710 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I + D+ E+ + +G V V+DFGAFV DGL+HIS++S V S V+ Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVLSV 681 Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687 GD TVWV +D DR K+ LS+ Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703 >gi|32035056|ref|ZP_00135122.1| COG2183: Transcriptional accessory protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 727 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ Sbjct: 656 KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEV 715 Query: 678 D-DRGKIKLSMK 688 D R +I L+M+ Sbjct: 716 DVQRKRIALTMR 727 >gi|125718044|ref|YP_001035177.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK36] gi|125497961|gb|ABN44627.1| 30S ribosomal protein S1, putative [Streptococcus sanguinis SK36] Length = 401 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|238758693|ref|ZP_04619867.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236] gi|238702990|gb|EEP95533.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236] Length = 788 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|83649058|ref|YP_437493.1| transcriptional accessory protein [Hahella chejuensis KCTC 2396] gi|83637101|gb|ABC33068.1| Transcriptional accessory protein [Hahella chejuensis KCTC 2396] Length = 775 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + V +VVK GD V VK+++ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISALSHKFVKDPREVVKAGDIVKVKVIEVDAAR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 713 KRIALTMRLDDE 724 >gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297] gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297] Length = 239 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 23/197 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R GR ++ +R+++ Q + GS L GDTQ I ++ D + G R Sbjct: 1 MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASV----DSGVPRFMKGEGR 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP ATG ++ A ++ G GRL R++ + T+ I Sbjct: 57 GWVTAEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +AL DA G+ PI VA +++G+ +D + Sbjct: 117 DVIQADGGTRTASITGAFVALSDAINGMLAEGTLKKNPIKHNVAAVSVGIWQD----TAV 172 Query: 477 SDISGDEDHLGHMDFKV 493 D+ ED D V Sbjct: 173 LDLDYAEDSTAETDLNV 189 >gi|238765201|ref|ZP_04626132.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC 33638] gi|238696584|gb|EEP89370.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC 33638] Length = 792 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|197286718|ref|YP_002152590.1| transcription accessory protein [Proteus mirabilis HI4320] gi|194684205|emb|CAR45692.1| putative transcription accessory protein [Proteus mirabilis HI4320] Length = 777 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+L+ D R Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVLEVDLPR 711 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 712 KRIALTMRL 720 >gi|152972285|ref|YP_001337431.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262045243|ref|ZP_06018269.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|150957134|gb|ABR79164.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259037453|gb|EEW38698.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 776 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|68249168|ref|YP_248280.1| transcriptional accessory protein [Haemophilus influenzae 86-028NP] gi|68057367|gb|AAX87620.1| predicted transcriptional accessory protein [Haemophilus influenzae 86-028NP] Length = 770 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606 E P VE I+ I++++G G +V Q AK ID+ + E+E Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625 Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 E + ITD+ + I +G V V +FGAFV +DGLVHIS LS Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD---QNTGK 696 + V VVK G+ V VK+L+ D R +I L+M++ + +N GK Sbjct: 685 DKFVEDPLQVVKTGNIVKVKVLEVDVLRKRIALTMRLDESAVKNDGK 731 >gi|264677719|ref|YP_003277625.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2] gi|262208231|gb|ACY32329.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2] Length = 387 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E +G V V FGAFV +DGLVH+SQ+S + + +VVK G Sbjct: 249 VEDIKDLKE-GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQI 307 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V VK+L+ D DR +I L+MK+ Sbjct: 308 VKVKVLEVDVDRKRISLTMKL 328 >gi|238896874|ref|YP_002921619.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae NTUH-K2044] gi|238549201|dbj|BAH65552.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 776 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|116873380|ref|YP_850161.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742258|emb|CAK21382.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 381 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G+VV+++ FGAFV +GLVHISQ+S + + +V+ EG T+ VK+L+ + Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGQTIEVKVLEVN 331 Query: 679 DRGKIKLSMKVVD 691 + K +LS+ + D Sbjct: 332 EADK-RLSLSIKD 343 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 ++ V ++ ++ E E A + ++++ E + +G V ++ +FGAFV G DGLVH Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGVVERLANFGAFVDIGGV-DGLVH 215 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ISQ+S + +A +V++EG V VK++ D + +I LS+K Sbjct: 216 ISQISYQHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256 >gi|330012471|ref|ZP_08307385.1| Tex-like protein [Klebsiella sp. MS 92-3] gi|328533822|gb|EGF60501.1| Tex-like protein [Klebsiella sp. MS 92-3] Length = 776 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS V VVK GD V VK+++ D R Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis] Length = 792 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ E + +G V V FGAFV +DGLVH+SQLS + V+ +VVK G Sbjct: 661 EGVEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVSDAREVVKTG 719 Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689 V VK+L+ D R +I L+M++ Sbjct: 720 AIVKVKVLEVDAARKRISLTMRL 742 >gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] Length = 239 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 24/243 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR ++ +R + L+ GS L GDT+ I ++ +E+ L G + Sbjct: 1 MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASV----EEKVPPFLRGENK 56 Query: 372 NDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP AT ++ M G S R RL RA+ V+ A T+ + + Sbjct: 57 GWVTAEYAMLPRAT-QIRTMRERGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCD 115 Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A + GS +A L+ AG VP++ +A ++G+V DD ++L Sbjct: 116 VVQADGGTRTAAISGSFVALYLALSKLVAAGTLSEVPVTDYLAATSIGIV---DDKLML- 171 Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 D++ ED +D V T SG I +Q + S M + A +G I++ Sbjct: 172 DLAFSEDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQK 231 Query: 537 KVL 539 ++L Sbjct: 232 RLL 234 >gi|90409187|ref|ZP_01217301.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3] gi|90309713|gb|EAS37884.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3] Length = 723 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 9/86 (10%) Query: 618 EVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 E+NKI +G + V FGAFV +DGL+H+SQL+ + V +VVK G Sbjct: 638 EINKISDLYTDMEIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQI 697 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNT 694 V V++L D +R +I LS+++ D N Sbjct: 698 VQVRVLSVDSERKRISLSLRLQDHNA 723 >gi|239983527|ref|ZP_04706051.1| transcriptional accessory protein [Streptomyces albus J1074] gi|291455345|ref|ZP_06594735.1| transcriptional accessory protein [Streptomyces albus J1074] gi|291358294|gb|EFE85196.1| transcriptional accessory protein [Streptomyces albus J1074] Length = 807 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ E + +G V V FGAFV +DGLVH+S +S V +VVK Sbjct: 643 REGVEKLSDL-EAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKP 701 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D R +I L++++ D+ Sbjct: 702 GDIVKVKVMEVDAARKRISLTLRLDDE 728 >gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1-like protein [Streptosporangium roseum DSM 43021] gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM 43021] Length = 500 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ GD ++VK++D Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354 Query: 678 D-DRGKIKLSMKVVDQN-TGKPI 698 D +R +I LS+K +++ TG I Sbjct: 355 DLERRRISLSLKQANESATGADI 377 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQV K +++FGAFV G DGLVH+S+LS + + S+VV+ G V V+ Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264 Query: 674 LLDFD-DRGKIKLSMKVVDQN 693 +LD D +R ++ LS+K ++ Sbjct: 265 VLDVDMERERVSLSLKATQED 285 >gi|319944389|ref|ZP_08018663.1| YhgF like protein [Lautropia mirabilis ATCC 51599] gi|319742350|gb|EFV94763.1| YhgF like protein [Lautropia mirabilis ATCC 51599] Length = 790 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V +FGAFV +DGLVHIS LS V +VVK GD V VK+L+ D R + Sbjct: 664 EGVVTNVANFGAFVDIGVHQDGLVHISALSDRFVKDPHEVVKTGDVVKVKVLEVDVRRQR 723 Query: 683 IKLSMKVVDQ 692 + L+M++ D+ Sbjct: 724 VALTMRMSDE 733 >gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] Length = 250 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 24/253 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+D R +R I + + + GS L GDT+ + T+ +E+ L G + Sbjct: 1 MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATV----EEKVPPFLRGKRH 56 Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT G + G + R + RL RA+ V+ T+ I Sbjct: 57 GWINAEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + G LAL+ A PI + +A +++G K G + ++ Sbjct: 117 DVLQADGGTRTAAITGGFLALVLAVDGLIQSGKLTDTPIKEGIAAVSVG--KVGTELLL- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+ +ED +D + T SG I +Q + S M+ L+ ++G +L+ Sbjct: 174 -DLCYEEDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAA 232 Query: 536 SKVLSESRLQLGE 548 + L S +GE Sbjct: 233 EQSLGASWWYVGE 245 >gi|326563237|gb|EGE13504.1| RNA binding protein S1 [Moraxella catarrhalis 46P47B1] gi|326569274|gb|EGE19335.1| RNA binding protein S1 [Moraxella catarrhalis BC7] gi|326571951|gb|EGE21956.1| RNA binding protein S1 [Moraxella catarrhalis BC8] Length = 788 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS VA +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|326562258|gb|EGE12584.1| RNA binding protein S1 [Moraxella catarrhalis 103P14B1] gi|326575461|gb|EGE25386.1| RNA binding protein S1 [Moraxella catarrhalis 101P30B1] Length = 788 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS VA +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|296112291|ref|YP_003626229.1| RNA binding protein S1 [Moraxella catarrhalis RH4] gi|295919984|gb|ADG60335.1| RNA binding protein S1 [Moraxella catarrhalis RH4] Length = 788 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS VA +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|242371560|ref|ZP_04817134.1| S1 domain RNA-binding protein [Staphylococcus epidermidis M23864:W1] gi|242350712|gb|EES42313.1| S1 domain RNA-binding protein [Staphylococcus epidermidis M23864:W1] Length = 716 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVH+S+LS + V ++V GD V V +LD D ++GK+ Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMEIVSVGDIVDVWILDIDENKGKV 707 Query: 684 KLSM 687 L+M Sbjct: 708 SLTM 711 >gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c] Length = 557 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + + ++ E +++ Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 195 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 253 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 254 RVSLGMK 260 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G V + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 275 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 333 Query: 676 DFD-DRGKIKLSMK 688 + D +R +I L +K Sbjct: 334 EIDEERRRISLGLK 347 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V+E GD + +L D +R Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 426 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 427 ERISLGVKQIEED 439 >gi|24376102|ref|NP_720145.1| hypothetical protein SO_4629 [Shewanella oneidensis MR-1] gi|24351131|gb|AAN57589.1|AE015894_9 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 784 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + + VVK GD V VK+++ Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 709 VDVERRRIGLSMRLDEAIDQS 729 >gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC 43969] gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC 43969] Length = 788 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|325694460|gb|EGD36369.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK150] gi|332360264|gb|EGJ38077.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK355] gi|332360840|gb|EGJ38646.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK49] Length = 400 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678] gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057] gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|295097017|emb|CBK86107.1| Transcriptional accessory protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 776 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|226324699|ref|ZP_03800217.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758] gi|225207147|gb|EEG89501.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758] Length = 359 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + K++D + Sbjct: 276 VGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSVGQEITAKIVDLN 335 Query: 679 DR-GKIKLSMKVVDQ 692 + KI LSMK ++ Sbjct: 336 EADKKISLSMKALEN 350 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G V V DFGAF+ G DGL+HIS++S RV V G+T+ V + D Sbjct: 192 KVGDVIEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVDNPKKVFTVGETLKVLVKDI 250 Query: 678 DDRGKIKLSMKVVDQN 693 D K+ LS+K + N Sbjct: 251 HDT-KVALSLKFPETN 265 >gi|168183009|ref|ZP_02617673.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf] gi|182673872|gb|EDT85833.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf] Length = 387 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%) Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V + Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251 Query: 675 LDFDDR-GKIKLSMKVVDQN 693 LDFD + KI LS+K V +N Sbjct: 252 LDFDKKTKKIALSLKDVKKN 271 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G VVK+++FGAFV +GLVHIS+++ E +AK S+ + GD V VK+L+ + Sbjct: 282 VGSVVEGIVVKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVN 341 Query: 679 -DRGKIKLSMK 688 D ++ LS+K Sbjct: 342 SDEKRMSLSIK 352 >gi|34496992|ref|NP_901207.1| transcriptional accessory protein [Chromobacterium violaceum ATCC 12472] gi|34102848|gb|AAQ59212.1| probable transcriptional accessory protein [Chromobacterium violaceum ATCC 12472] Length = 770 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + + VVK GD V VK+L+ D R Sbjct: 654 VLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVLEVDVAR 713 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 714 KRIALTMRLDDE 725 >gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168] gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168] Length = 246 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 25/206 (12%) Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369 +R+DGR ++ +RD+ + GS L GDT+ I ++ +E L G Sbjct: 5 NNLRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASV----EESVPPFLRGQ 60 Query: 370 QRNDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y+ LP +T EV+R G S R RL R++ V+ T+ Sbjct: 61 NTGWLTAEYSLLPRSTHSRTIREVAR-GRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIW 119 Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDF 473 + ++ ++DG + A++ G+ +AL+DA GV P++ +A ++G+V DG+ Sbjct: 120 VDCDVIQADGGTRTASITGAYVALVDAINYLIEEGVLEESPLNSFMAATSVGVV-DGE-- 176 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 +L D+ +ED +D + T+ G Sbjct: 177 -MLLDLCYEEDFQAQVDMNIVMTEDG 201 >gi|296105102|ref|YP_003615248.1| putative transcription accessory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059561|gb|ADF64299.1| putative transcription accessory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 776 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|242237776|ref|YP_002985957.1| RNA binding S1 domain protein [Dickeya dadantii Ech703] gi|242129833|gb|ACS84135.1| RNA binding S1 domain protein [Dickeya dadantii Ech703] Length = 775 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+L+ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVLEVDLPR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810] gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810] Length = 493 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A +E + +RS + ++ +G V +++FGAFV G DGLVH+S+LS + Sbjct: 184 SRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 242 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 243 IDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQED 280 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV V+VK++D D Sbjct: 291 IGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDID 350 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 351 LERRRISLSLK 361 >gi|115447329|ref|NP_001047444.1| Os02g0617700 [Oryza sativa Japonica Group] gi|113536975|dbj|BAF09358.1| Os02g0617700 [Oryza sativa Japonica Group] Length = 322 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 48/73 (65%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + YKG V + ++GAFV F G + GL+HIS+LS ++V+K SDVV G + + + Sbjct: 27 EVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQ 86 Query: 678 DDRGKIKLSMKVV 690 D RG IKLS+K Sbjct: 87 DLRGNIKLSLKAT 99 >gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|323135904|ref|ZP_08070987.1| Tex-like protein-like [Methylocystis sp. ATCC 49242] gi|322398995|gb|EFY01514.1| Tex-like protein-like [Methylocystis sp. ATCC 49242] Length = 770 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS LS E V VVK GD V VK+++ D R + Sbjct: 651 EGVVTNVAAFGAFVDIGVHQDGLVHISALSKEFVKDPRSVVKPGDIVKVKVMEVDVPRKR 710 Query: 683 IKLSMKVVD 691 I LSM++ D Sbjct: 711 ISLSMRLDD 719 >gi|238882910|gb|EEQ46548.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida albicans WO-1] Length = 996 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674 P+V KIY G V V ++GAF+ G GL HISQ+S + RV T +V+ V+VK+ Sbjct: 73 PQVGKIYSGVVQSVTNYGAFIKIEGT-SGLCHISQMSFDGSRVEST-NVLAPNQKVFVKV 130 Query: 675 LDFDDRG-KIKLSMKVVDQNTG 695 ++ +I LSM+ ++QNTG Sbjct: 131 INIQTHANRISLSMRGINQNTG 152 >gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46] gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46] Length = 487 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V +++FGAFV G DGLVH+S+LS + + S+VV+ GD V V++L+ D + Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLEVDLN 266 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 267 RERVSLSLKATQED 280 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L++ + +V + V VK++D D Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K D++ Sbjct: 351 LERRRISLSLKQADED 366 >gi|170758634|ref|YP_001787128.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum A3 str. Loch Maree] gi|169405623|gb|ACA54034.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A3 str. Loch Maree] Length = 638 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 587 IDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 I D KI S ++ R E I + E + + +G+V + DFGAF+ G DG Sbjct: 445 IKDRYRTKIVGSRRNILKTIRNEHIEETWNSLEKDTVVEGEVKRFTDFGAFIEINGV-DG 503 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 L+H+S++S RV K D +K GD + V +LD D + K+ LS+K + ++ K + Sbjct: 504 LLHVSEISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRINKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|223995143|ref|XP_002287255.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 398 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 11/99 (11%) Query: 610 IRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGAR---------DGLVHISQLSTERVAK 659 I++I+D + +K G+VV + FGAFV F A+ DGLVHIS L+ R A Sbjct: 245 IKAISDKGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTAN 304 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 SDV GD V V++ + + G+I LSM +Q P Sbjct: 305 VSDVAAVGDKVSVRVRSVEPEAGRISLSMITKEQEEAAP 343 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ + V + +GAF+ D LVH+S+LS + VA DVVK G+ + V+++ Sbjct: 142 EIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVRIVSV 201 Query: 678 D-DRGKIKLSMK 688 D ++ +I ++M+ Sbjct: 202 DTEKNQIAVTMR 213 >gi|241663192|ref|YP_002981552.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12D] gi|240865219|gb|ACS62880.1| RNA binding S1 domain protein [Ralstonia pickettii 12D] Length = 788 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF++ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 673 VLEGVVTNVAAFGAFINIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 732 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 733 NRIGLTMRLSDE 744 >gi|325694859|gb|EGD36764.1| S1 RNA binding domain protein [Streptococcus sanguinis SK150] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66] gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|317494412|ref|ZP_07952826.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917662|gb|EFV39007.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 778 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDMQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|270291222|ref|ZP_06197445.1| transcription accessory protein [Pediococcus acidilactici 7_4] gi|270280618|gb|EFA26453.1| transcription accessory protein [Pediococcus acidilactici 7_4] Length = 724 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L V SDVV GD TVWV+ +D R Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVD-TKRS 712 Query: 682 KIKLSM 687 +I+L+M Sbjct: 713 RIQLTM 718 >gi|268608950|ref|ZP_06142677.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Ruminococcus flavefaciens FD-1] Length = 657 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I K +V + FGAF DGL+HISQ++ +V DV+ GD V VK++D Sbjct: 567 KVGDIVKATIVSITSFGAFAQIIDGVDGLIHISQIADRKVENVKDVLSVGDEVDVKIIDI 626 Query: 678 D-DRGKIKLSMKVV 690 D D +I +SM+ + Sbjct: 627 DYDSKRISISMRAL 640 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query: 590 DGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 +G K A S+ ++ A+ E + EV Y G+V + FGAFV G DG+V Sbjct: 452 EGGRKRAVGSIKAVQNAKKAEAQAKFWETAEVGATYTGKVKSLTSFGAFVDL-GGIDGMV 510 Query: 648 HISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQN 693 HIS+LS +R+ S+VV GDT V++K LD + +I L K + N Sbjct: 511 HISELSWKRIKHPSEVVNVGDTLEVYIKELD-KEANRISLGYKKTEDN 557 >gi|302555511|ref|ZP_07307853.1| transcriptional accessory protein [Streptomyces viridochromogenes DSM 40736] gi|302473129|gb|EFL36222.1| transcriptional accessory protein [Streptomyces viridochromogenes DSM 40736] Length = 794 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+S +S V DVVK GD V VK+LD D R Sbjct: 658 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDIPR 717 Query: 681 GKIKLSMKVVDQ 692 +I L++++ D+ Sbjct: 718 KRISLTLRLDDE 729 >gi|117922444|ref|YP_871636.1| RNA-binding S1 domain-containing protein [Shewanella sp. ANA-3] gi|117614776|gb|ABK50230.1| RNA binding S1 domain protein [Shewanella sp. ANA-3] Length = 779 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ I +G V V +FGAFV +DGLVHIS L+ + + VVK GD V VK+++ Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 709 VDVERRRIGLSMRLDEAIDQS 729 >gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|297624806|ref|YP_003706240.1| RNA binding S1 domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165986|gb|ADI15697.1| RNA binding S1 domain protein [Truepera radiovictrix DSM 17093] Length = 705 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652 V I+ S+ E E A + ++ + E +G+VV++ DFGAFV+ G DGLVH S++ Sbjct: 276 VIISRRSILEEELAEQKAETLKKL-EPGARLEGEVVEITDFGAFVNLGGI-DGLVHRSEI 333 Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 + R +V++ G V V++LD D +R +I LSMK Sbjct: 334 THGRFNHPREVLEVGQKVKVEVLDMDLERERINLSMK 370 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + FGAFV +GL+H+S++S T+RV ++++EG V +L D + + Sbjct: 392 GKVTNLTPFGAFVEIEEGLEGLIHVSEMSWTKRVRHPKELLEEGQEVEAMILKIDVQQQR 451 Query: 683 IKLSMK 688 I L M+ Sbjct: 452 ISLGMR 457 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 G + + DFG F+ +GLVHIS+L+ E + S+ GD + +L+ D Sbjct: 479 GPITGLTDFGVFMEIEEGIEGLVHISELAHEHIEDISEHFSRGDEITAVILNID 532 >gi|257416081|ref|ZP_05593075.1| SSU ribosomal protein S1P [Enterococcus faecalis AR01/DG] gi|257157909|gb|EEU87869.1| SSU ribosomal protein S1P [Enterococcus faecalis ARO1/DG] Length = 403 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAF+ G DGLVH+S+++ + V K SD + G+ V VK+L + + Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ + + Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351 Query: 681 GKIKLSMKVVD 691 +I LS+K ++ Sbjct: 352 HRIALSIKALE 362 >gi|296121873|ref|YP_003629651.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] gi|296014213|gb|ADG67452.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776] Length = 597 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Query: 603 IEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 IE RE ++ + D+ E +I KG V + DFGAFV G DGL+HI+ +S R+ Sbjct: 201 IEEQREKMKKTLLADLKE-GEIRKGTVKNIADFGAFVDLGGI-DGLLHITDMSWGRIGHP 258 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 S++VK D V V +L D DR KI L +K D++ Sbjct: 259 SEMVKIDDEVEVMILHIDRDREKIALGLKQKDKS 292 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672 T P KI KG VV VM +GAFV +GLVHIS++S T+RV S++V GD V V Sbjct: 299 TKYPVGTKI-KGDVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRVNHPSELVNPGDEVEV 357 Query: 673 KLLDFD-DRGKIKLSMK 688 +L+ + D+ +I L MK Sbjct: 358 VVLNINKDKQEISLGMK 374 Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679 I +G V + ++GAF+ DGL+H+S +S T +++ ++++K+GD + +++ D + Sbjct: 393 IVEGTVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHANEMLKKGDLLKCQVISVDEE 452 Query: 680 RGKIKLSMKVVDQN 693 R +I L +K +D++ Sbjct: 453 RKRIALGLKQLDED 466 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-- 678 ++ G+V K+ +FG FV +GL+H+S+L+ +++ VK GD + V++L D Sbjct: 480 EVVTGKVTKITNFGVFVELESELEGLLHVSELADQKIENPETFVKVGDELEVRILRIDPV 539 Query: 679 DRGKIKLSMK 688 DR KI LS K Sbjct: 540 DR-KIGLSRK 548 >gi|237794446|ref|YP_002861998.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657] gi|229261852|gb|ACQ52885.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657] Length = 387 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%) Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V + Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251 Query: 675 LDFDDR-GKIKLSMKVVDQN 693 LDFD + KI LS+K V +N Sbjct: 252 LDFDKKTKKIALSLKDVKKN 271 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G VVK+++FGAFV +GLVHIS+++ E +AK S+ + GD V VK+L+ + Sbjct: 282 VGSVVEGIVVKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVN 341 Query: 679 -DRGKIKLSMK 688 D ++ LS+K Sbjct: 342 SDEKRMSLSIK 352 >gi|195941060|ref|ZP_03086442.1| hypothetical protein EscherichcoliO157_32501 [Escherichia coli O157:H7 str. EC4024] Length = 199 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 76 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 135 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 136 KRIALTMRLDEQ 147 >gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|329571715|gb|EGG53396.1| putative ribosomal protein S1 [Enterococcus faecalis TX1467] Length = 403 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAF+ G DGLVH+S+++ + V K SD + G+ V VK+L + + Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ + + Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351 Query: 681 GKIKLSMKVVD 691 +I LS+K ++ Sbjct: 352 HRIALSIKALE 362 >gi|310640779|ref|YP_003945537.1| tex-like protein protein-like protein [Paenibacillus polymyxa SC2] gi|309245729|gb|ADO55296.1| Tex-like protein protein-like protein [Paenibacillus polymyxa SC2] Length = 753 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQL + V DVV GD V V +L+ D +G+ Sbjct: 679 QGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 738 Query: 683 IKLSMK 688 + L+MK Sbjct: 739 VGLTMK 744 >gi|56961881|ref|YP_173603.1| hypothetical protein ABC0099 [Bacillus clausii KSM-K16] gi|56908115|dbj|BAD62642.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 142 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +G+V + FGAFV G GLVHIS+++ V ++++K GD V VK+++ Sbjct: 4 EAGSKLQGKVTGITHFGAFVELPGGSTGLVHISEVADHYVKDINELLKVGDEVTVKVVNV 63 Query: 678 DDRGKIKLSM-KVVDQNTG 695 + GKI LS+ K VD+ G Sbjct: 64 EKDGKIGLSIRKAVDRPEG 82 >gi|331701918|ref|YP_004398877.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129261|gb|AEB73814.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929] Length = 168 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 43/76 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V + +FGAF+ R GLVHIS++S V DV+K GD V VK+L Sbjct: 4 EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDDVTVKVLKI 63 Query: 678 DDRGKIKLSMKVVDQN 693 + KI LS++ N Sbjct: 64 EGNNKISLSIRKASDN 79 >gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160] gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212] gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212] Length = 555 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E + E + ++ E +I KG + + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ RV SD++ GD V VK+L FD D+ ++ L MK Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN G+V + D+G FV +GLVH S+L T + S VV+ G+ V V +L+ Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +N Sbjct: 336 DEERRRISLGIKQCKRN 352 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL + R + + E ++ G+V + DFG F+ G DGLVH+S +S TE Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 + K+GD V +L D +R +I L +K Q G P + Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442 >gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956] gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931] gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN] gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956] gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931] gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN] Length = 410 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+++ + + +G+V ++ +FGAF+ G DGLVH+S++S + V K +DV Sbjct: 189 EAAKKIFSELA----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPADV 243 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ G V VK+L+ D +R +I LS+K Sbjct: 244 LEVGQEVKVKVLNVDPERERISLSIK 269 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +DV++ G V VK+L+ D Sbjct: 285 VGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVD 344 Query: 679 -DRGKIKLSMKVVDQ 692 +R ++ LS+K +++ Sbjct: 345 PERQRLGLSIKALEE 359 >gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small ribosomal subunit [Ostreococcus lucimarinus CCE9901] gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small ribosomal subunit [Ostreococcus lucimarinus CCE9901] Length = 339 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + +G V V +GAFV G + GL+HISQ+S ER+ +V+ GD + V ++ Sbjct: 225 EVGDVVEGMVQAVKPYGAFVDV-GGQSGLLHISQISHERIVAVENVLSPGDRIKVLVMSK 283 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D ++G++ LS K ++QN G Sbjct: 284 DAEKGRLSLSTKKLEQNHG 302 >gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus sanguinis SK36] gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative [Streptococcus sanguinis SK36] gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX] gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX] Length = 485 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641 AK+ D + S A +E + +R + + + +I KG V +++FGAFV G Sbjct: 173 AKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGG 232 Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 DGLVH+S+LS + + S+VV+ G V V++LD D +R ++ LS+K ++ Sbjct: 233 V-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQED 284 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVHIS+L+ V VV+ G ++VK++D Sbjct: 294 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGTEIFVKIIDI 353 Query: 678 D-DRGKIKLSMKVVDQN 693 D DR +I LS+K +++ Sbjct: 354 DLDRRRISLSLKQANES 370 >gi|332358941|gb|EGJ36762.1| S1 RNA binding domain protein [Streptococcus sanguinis SK49] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|304385510|ref|ZP_07367855.1| YhgF like protein [Pediococcus acidilactici DSM 20284] gi|304328717|gb|EFL95938.1| YhgF like protein [Pediococcus acidilactici DSM 20284] Length = 724 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L V SDVV GD TVWV+ +D R Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVD-TKRS 712 Query: 682 KIKLSM 687 +I+L+M Sbjct: 713 RIQLTM 718 >gi|239637494|ref|ZP_04678468.1| S1 family RNA-binding protein [Staphylococcus warneri L37603] gi|239596939|gb|EEQ79462.1| S1 family RNA-binding protein [Staphylococcus warneri L37603] gi|330686090|gb|EGG97712.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU121] Length = 135 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 40/71 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSLGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 ADDGKISLSIK 74 >gi|51598056|ref|YP_072247.1| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP 32953] gi|186897256|ref|YP_001874368.1| RNA-binding S1 domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51591338|emb|CAH23004.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|186700282|gb|ACC90911.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis PB1/+] Length = 791 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|302328188|gb|ADL27389.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 590 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E N++ KG V + DFGAF+ G DGL+HI+ +S +R+ S++++ G V V +LDF Sbjct: 210 EKNQVRKGIVKNITDFGAFIDLGGV-DGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDF 268 Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698 +D+ +I L MK + + K I Sbjct: 269 NDKKERISLGMKQLKPHPWKDI 290 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G++ + FGAFV DGL+H+S +S T+++ +++VK+GD V +L D ++ + Sbjct: 389 GEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKEKRR 448 Query: 683 IKLSMK 688 I LSMK Sbjct: 449 ISLSMK 454 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-DD 679 I KG+VV + D+GAFV +GL+H+S++S T+ V S ++ G V +L +D Sbjct: 299 IVKGKVVSITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEED 358 Query: 680 RGKIKLSMK 688 +I L MK Sbjct: 359 AERISLGMK 367 >gi|296117628|ref|ZP_06836212.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306] gi|295969359|gb|EFG82600.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306] Length = 749 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 4/92 (4%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 +E + I+D VP + + +G V V FGAFV +DGLVHIS +S + V+ +VV+ Sbjct: 627 KEGVEKISDLVPGM--VLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNKFVSDPHEVVR 684 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 G+ V VK+L+ D R +I L++++ D+ K Sbjct: 685 SGEVVRVKVLEVDVPRKRISLTLRLEDEAQAK 716 >gi|260913556|ref|ZP_05920033.1| YhgF like protein [Pasteurella dagmatis ATCC 43325] gi|260632332|gb|EEX50506.1| YhgF like protein [Pasteurella dagmatis ATCC 43325] Length = 771 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I+D+ + + +G V V +FGAFV +DGLVHIS LS + V VVK GD Sbjct: 642 VEEISDL-KAGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V VK+L+ D R +I L+M++ Sbjct: 701 VKVKVLEVDVPRKRIALTMRL 721 >gi|261341906|ref|ZP_05969764.1| protein YhgF [Enterobacter cancerogenus ATCC 35316] gi|288315809|gb|EFC54747.1| protein YhgF [Enterobacter cancerogenus ATCC 35316] Length = 776 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154] gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154] Length = 555 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E + E + ++ E +I KG + + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ RV SD++ GD V VK+L FD D+ ++ L MK Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN G+V + D+G FV +GLVH S+L T + S VV+ G+ V V +L+ Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +N Sbjct: 336 DEERRRISLGIKQCKRN 352 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL + R + + E ++ G+V + DFG F+ G DGLVH+S +S TE Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 + K+GD V +L D +R +I L +K Q G P + Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442 >gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] Length = 665 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685 VV++ FGAF DGL+HISQL+ RV K DVV GD V VK+LD + +I L Sbjct: 584 VVRLTPFGAFAELEPGVDGLIHISQLADRRVNKPEDVVSVGDQVKVKVLDIKEAERRISL 643 Query: 686 SMKVVDQN 693 S++ V ++ Sbjct: 644 SIRAVKED 651 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + +G V ++ DFGAFV G DGL+H+S++S R+ S+VVKEGD + V +L Sbjct: 490 EEGQTRRGTVRRLTDFGAFVDLGGV-DGLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKV 548 Query: 678 D-DRGKIKLSMKVVDQN 693 D ++ K+ L +K V N Sbjct: 549 DREKEKVSLGLKQVLPN 565 >gi|26986988|ref|NP_742413.1| S1 RNA-binding domain-containing protein [Pseudomonas putida KT2440] gi|24981603|gb|AAN65877.1|AE016215_12 S1 RNA binding domain protein [Pseudomonas putida KT2440] Length = 861 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 734 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 793 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 794 DIPRKRVGLSMRMSD 808 >gi|153950179|ref|YP_001402930.1| hypothetical protein YpsIP31758_3982 [Yersinia pseudotuberculosis IP 31758] gi|152961674|gb|ABS49135.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] Length = 791 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii] Length = 343 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 18/211 (8%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 + D+ R+DGR + +R I A++G+ + GS +G+T+A+ VV G+R Sbjct: 104 ALSDQGYRVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARA 163 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 +L Q Y+ +TGE R R+ G R+ + Sbjct: 164 LPDRALVNCQ-------YSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPR 216 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 + I ++ ++DG + A V ++LA++DAG+P+ V + G V D L+D+S Sbjct: 217 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 272 Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509 E+ G +A I ++MD ++ Sbjct: 273 HVEEAAGGPQLALALLPASGQIALLEMDARL 303 >gi|293115412|ref|ZP_05791358.2| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876] gi|292810175|gb|EFF69380.1| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876] Length = 720 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679 I G V V+DFGAFV +DGLVHISQL++++ K +VV GD V VK+L+ D Sbjct: 651 ILSGTVRNVIDFGAFVDIGVHQDGLVHISQLTSKKYIKHPMEVVSVGDIVQVKVLNVDIP 710 Query: 680 RGKIKLSM 687 + +I+LSM Sbjct: 711 KKRIQLSM 718 >gi|147677954|ref|YP_001212169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Pelotomaculum thermopropionicum SI] gi|146274051|dbj|BAF59800.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 667 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 S+ + V I K +VV++ FGAFV +GLVHIS L+ V K +VV EG+ V Sbjct: 549 SVQEKYPVGSIVKAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVVKPDEVVSEGEEVN 608 Query: 672 VKLLDFDDRGK-IKLSMKVV 690 VK+L D K I+LS++ V Sbjct: 609 VKVLSVDQAEKRIRLSIREV 628 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 + G K+ S A +E +R T D + ++ KG V ++ FGAFV G DGL+ Sbjct: 440 NRGRKKVILSRKAVLEEEYARLRQETLDTLQEGQVVKGTVRRLTQFGAFVDIGGV-DGLL 498 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 HIS++S R+ S+VVK GD + + +L D + KI L +K V N Sbjct: 499 HISEMSWHRINHPSEVVKVGDELEIMVLKLDRENEKISLGLKQVLPN 545 >gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM 2380] gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM 2380] Length = 759 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ +R I+D+ E I G V V FGAFV +DGLVH+S L+ V +VV+ Sbjct: 637 RDDVREISDLKE-GMILSGTVTNVAAFGAFVDIGVHQDGLVHVSHLAHRFVKDPGEVVRV 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD V VK+L D R +I LS+K Sbjct: 696 GDIVKVKVLSVDAARKRIGLSIK 718 >gi|25028495|ref|NP_738549.1| putative transcriptional accessory protein [Corynebacterium efficiens YS-314] gi|259507552|ref|ZP_05750452.1| histidine triad domain-containing protein [Corynebacterium efficiens YS-314] gi|23493780|dbj|BAC18749.1| putative transcriptional accessory protein [Corynebacterium efficiens YS-314] gi|259164872|gb|EEW49426.1| histidine triad domain-containing protein [Corynebacterium efficiens YS-314] Length = 775 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ I +G V V FGAFV +DGLVH+S +S + ++ +VV+ Sbjct: 632 KEGVEKISDLSP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSEKFISDPHEVVRS 690 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 G V VK+++ D DR +I LS+++ D+ G+P Sbjct: 691 GQVVKVKVMEVDVDRKRIGLSLRLNDE-PGQP 721 >gi|332798196|ref|YP_004459695.1| RNA binding S1 domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695931|gb|AEE90388.1| RNA binding S1 domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +I +G+V + FGAFV GLVHIS+++ V +D +KE D + VK++ Sbjct: 4 EVGQILEGRVTGITKFGAFVEISEGVTGLVHISEVADSFVKDVNDFLKENDIIKVKVISI 63 Query: 678 DDRGKIKLSMKVVDQNT 694 GK+ LS++ +N+ Sbjct: 64 SSDGKVSLSIRKTKENS 80 >gi|297561854|ref|YP_003680828.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846302|gb|ADH68322.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 797 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+S LS + V DVVK GD V VK+ D D R Sbjct: 662 LLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSYKFVEDPRDVVKPGDIVKVKVQDVDIPR 721 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 722 KRISLTMRLDDE 733 >gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7] Length = 249 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR ++ +R + GS L GDT+ I ++ +++ L G Sbjct: 1 MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASI----EDKVPPFLKGKGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 YN +P +T +++R G R + R+ RA+ V+ + T+ I Sbjct: 57 GWITCEYNMIPRSTKVRKVRDINR-GKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWID 115 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL+DA P+ V I++G+V + + Sbjct: 116 CDVIQADGGTRTASISGAFIALVDAVNKLHKQTPFNVYPVRDFVGAISVGIVGN----VK 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ +ED ++D V TDSG Sbjct: 172 MLDLCYEEDSKANVDMNVVMTDSG 195 >gi|300860310|ref|ZP_07106397.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11] gi|300849349|gb|EFK77099.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11] gi|315144429|gb|EFT88445.1| putative ribosomal protein S1 [Enterococcus faecalis TX2141] gi|315160457|gb|EFU04474.1| putative ribosomal protein S1 [Enterococcus faecalis TX0645] Length = 403 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAF+ G DGLVH+S+++ + V K SD + G+ V VK+L + + Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ + + Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351 Query: 681 GKIKLSMKVVD 691 +I LS+K ++ Sbjct: 352 HRIALSIKALE 362 >gi|225027513|ref|ZP_03716705.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353] gi|224955152|gb|EEG36361.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353] Length = 716 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 7/86 (8%) Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV E+ + +G V+K V+DFGAFV +DGLVHISQ++ + +VV GD Sbjct: 631 TDVLEMKDLKEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGD 690 Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693 + V+++ D ++ +I+L+MK +D N Sbjct: 691 IIDVQVMSVDLNKKRIQLTMK-IDHN 715 >gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111] gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493] gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493] gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111] Length = 555 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E + E + ++ E +I KG + + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ RV SD++ GD V VK+L FD D+ ++ L MK Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN G+V + D+G FV +GLVH S+L T + S VV+ G+ V V +L+ Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +N Sbjct: 336 DEERRRISLGIKQCKRN 352 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL + R + + E ++ G+V + DFG F+ G DGLVH+S +S TE Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 + K+GD V +L D +R +I L +K Q G P + Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442 >gi|94310177|ref|YP_583387.1| RNA binding S1 [Cupriavidus metallidurans CH34] gi|93354029|gb|ABF08118.1| Putative RNA-binding transcription accessory protein [Cupriavidus metallidurans CH34] Length = 787 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LST+ V +VVK G V VK+++ D R Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEVDVKR 724 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 725 NRIGLTMRLDDE 736 >gi|22127783|ref|NP_671206.1| hypothetical protein y3913 [Yersinia pestis KIM 10] gi|45439997|ref|NP_991536.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108809326|ref|YP_653242.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua] gi|108814091|ref|YP_649858.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516] gi|145597384|ref|YP_001161459.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F] gi|150260816|ref|ZP_01917544.1| predicted transcriptional accessory protein [Yersinia pestis CA88-4125] gi|162421540|ref|YP_001608058.1| hypothetical protein YpAngola_A3743 [Yersinia pestis Angola] gi|165928028|ref|ZP_02223860.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936122|ref|ZP_02224691.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010602|ref|ZP_02231500.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166213288|ref|ZP_02239323.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398728|ref|ZP_02304252.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418783|ref|ZP_02310536.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425730|ref|ZP_02317483.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468692|ref|ZP_02333396.1| hypothetical protein YpesF_12509 [Yersinia pestis FV-1] gi|218927345|ref|YP_002345220.1| hypothetical protein YPO0134 [Yersinia pestis CO92] gi|229836385|ref|ZP_04456552.1| predicted transcriptional accessory protein [Yersinia pestis Pestoides A] gi|229839990|ref|ZP_04460149.1| predicted transcriptional accessory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842071|ref|ZP_04462226.1| predicted transcriptional accessory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904628|ref|ZP_04519739.1| predicted transcriptional accessory protein [Yersinia pestis Nepal516] gi|270488159|ref|ZP_06205233.1| S1 RNA binding domain protein [Yersinia pestis KIM D27] gi|294502224|ref|YP_003566286.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003] gi|21960912|gb|AAM87457.1|AE013996_2 hypothetical protein y3913 [Yersinia pestis KIM 10] gi|45434852|gb|AAS60413.1| Predicted RNA binding protein, Contains S1 domain [Yersinia pestis biovar Microtus str. 91001] gi|108777739|gb|ABG20258.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516] gi|108781239|gb|ABG15297.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua] gi|115345956|emb|CAL18820.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209080|gb|ABP38487.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F] gi|149290224|gb|EDM40301.1| predicted transcriptional accessory protein [Yersinia pestis CA88-4125] gi|162354355|gb|ABX88303.1| conserved hypothetical protein [Yersinia pestis Angola] gi|165915736|gb|EDR34344.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|165919977|gb|EDR37278.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990692|gb|EDR42993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166205586|gb|EDR50066.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962777|gb|EDR58798.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051232|gb|EDR62640.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055420|gb|EDR65214.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678746|gb|EEO74851.1| predicted transcriptional accessory protein [Yersinia pestis Nepal516] gi|229690381|gb|EEO82435.1| predicted transcriptional accessory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696356|gb|EEO86403.1| predicted transcriptional accessory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706453|gb|EEO92460.1| predicted transcriptional accessory protein [Yersinia pestis Pestoides A] gi|262360303|gb|ACY57024.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004] gi|270336663|gb|EFA47440.1| S1 RNA binding domain protein [Yersinia pestis KIM D27] gi|294352683|gb|ADE63024.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003] gi|320013270|gb|ADV96841.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 791 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|313621003|gb|EFR92132.1| general stress protein 13 [Listeria innocua FSL S4-378] Length = 69 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 41/66 (62%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G + GLVHIS+++ V +D++ GD V VK+++ Sbjct: 4 EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63 Query: 678 DDRGKI 683 D GKI Sbjct: 64 GDDGKI 69 >gi|170022431|ref|YP_001718936.1| RNA-binding S1 domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|169748965|gb|ACA66483.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis YPIII] Length = 791 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|311071146|ref|YP_003976069.1| putative RNA helicase [Bacillus atrophaeus 1942] gi|310871663|gb|ADP35138.1| putative RNA helicase [Bacillus atrophaeus 1942] Length = 719 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D +G Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDA-QKG 711 Query: 682 KIKLSM 687 ++ LSM Sbjct: 712 RVSLSM 717 >gi|222055457|ref|YP_002537819.1| ribosomal protein S1 [Geobacter sp. FRC-32] gi|221564746|gb|ACM20718.1| ribosomal protein S1 [Geobacter sp. FRC-32] Length = 586 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEV-NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I S A +E RE RS T + +G V + D+GAFV G DGL+H++ +S Sbjct: 193 IVLSRRALLEEEREKARSTTLATLAEGDVLEGVVKNIADYGAFVDLGGV-DGLLHVTDMS 251 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 R+ S+ VK GD + VK+L +D ++GKI L +K Sbjct: 252 WGRLNHPSEAVKVGDALKVKVLKYDREKGKISLGLK 287 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG+V + DFG F+ +GLVHIS+LS E++A T D GD + +L DD K Sbjct: 482 KGKVTSITDFGIFLEIEEGIEGLVHISELSQEKLASTKDFAAVGDELEAVVLGVDDVEKK 541 Query: 683 IKLSMKVV 690 I LS+K + Sbjct: 542 IALSIKAL 549 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671 I D V +GQ+ + DFG F+ DGLVH+S +S T+R+ ++ +G T+ Sbjct: 384 IGDRYPVGTKIEGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGEIFGKGQTIQ 443 Query: 672 VKLLDFDDRGKIKLSMKV 689 +L+ D + +LS+ + Sbjct: 444 AVVLNIDSENE-RLSLGI 460 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G+VV + ++GAF+ +GLVHIS++S T+RV S+++ G V +L D Sbjct: 308 QGKVVSLTEYGAFIALGEGVEGLVHISEMSWTKRVRHPSELLTVGQEVEAVVLGVDVSSR 367 Query: 682 KIKLSMKVVDQN 693 +I L +K + N Sbjct: 368 RISLGLKQTEVN 379 >gi|146313452|ref|YP_001178526.1| RNA-binding S1 domain-containing protein [Enterobacter sp. 638] gi|145320328|gb|ABP62475.1| RNA binding S1 domain protein [Enterobacter sp. 638] Length = 776 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVQDPHTVVKAGDIVKVKVLEVDMPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|90962233|ref|YP_536149.1| transcription accessory protein [Lactobacillus salivarius UCC118] gi|301299872|ref|ZP_07206106.1| Tex-like protein N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821427|gb|ABE00066.1| Transcription accessory protein [Lactobacillus salivarius UCC118] gi|300852543|gb|EFK80193.1| Tex-like protein N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 723 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVH+S+LS + V+ DVV G TVWV+ +D +R Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDVDL-NRK 712 Query: 682 KIKLSM 687 +I+L+M Sbjct: 713 RIQLTM 718 >gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583] gi|227518739|ref|ZP_03948788.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104] gi|227553349|ref|ZP_03983398.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22] gi|229545836|ref|ZP_04434561.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322] gi|255975865|ref|ZP_05426451.1| SSU ribosomal protein S1P [Enterococcus faecalis T2] gi|256619051|ref|ZP_05475897.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200] gi|256762477|ref|ZP_05503057.1| SSU ribosomal protein S1P [Enterococcus faecalis T3] gi|256853113|ref|ZP_05558483.1| ribosomal protein S1 [Enterococcus faecalis T8] gi|256958968|ref|ZP_05563139.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5] gi|256961939|ref|ZP_05566110.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96] gi|256965137|ref|ZP_05569308.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704] gi|257078999|ref|ZP_05573360.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1] gi|257082562|ref|ZP_05576923.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol] gi|257085195|ref|ZP_05579556.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1] gi|257086756|ref|ZP_05581117.1| SSU ribosomal protein S1P [Enterococcus faecalis D6] gi|257089873|ref|ZP_05584234.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188] gi|257419284|ref|ZP_05596278.1| 30S ribosomal protein S1P [Enterococcus faecalis T11] gi|293383007|ref|ZP_06628925.1| ribosomal protein S1 [Enterococcus faecalis R712] gi|293389504|ref|ZP_06633961.1| ribosomal protein S1 [Enterococcus faecalis S613] gi|294781351|ref|ZP_06746694.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1] gi|307271030|ref|ZP_07552313.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248] gi|307273237|ref|ZP_07554483.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855] gi|307274974|ref|ZP_07556137.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134] gi|307278086|ref|ZP_07559170.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860] gi|307289093|ref|ZP_07569049.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109] gi|307292008|ref|ZP_07571877.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411] gi|312900748|ref|ZP_07760045.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470] gi|312903295|ref|ZP_07762475.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635] gi|312907522|ref|ZP_07766513.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512] gi|312910140|ref|ZP_07768987.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516] gi|29343573|gb|AAO81335.1| ribosomal protein S1 [Enterococcus faecalis V583] gi|227073820|gb|EEI11783.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104] gi|227177518|gb|EEI58490.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22] gi|229309035|gb|EEN75022.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322] gi|255968737|gb|EET99359.1| SSU ribosomal protein S1P [Enterococcus faecalis T2] gi|256598578|gb|EEU17754.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200] gi|256683728|gb|EEU23423.1| SSU ribosomal protein S1P [Enterococcus faecalis T3] gi|256711572|gb|EEU26610.1| ribosomal protein S1 [Enterococcus faecalis T8] gi|256949464|gb|EEU66096.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5] gi|256952435|gb|EEU69067.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96] gi|256955633|gb|EEU72265.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704] gi|256987029|gb|EEU74331.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1] gi|256990592|gb|EEU77894.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol] gi|256993225|gb|EEU80527.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1] gi|256994786|gb|EEU82088.1| SSU ribosomal protein S1P [Enterococcus faecalis D6] gi|256998685|gb|EEU85205.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188] gi|257161112|gb|EEU91072.1| 30S ribosomal protein S1P [Enterococcus faecalis T11] gi|291079672|gb|EFE17036.1| ribosomal protein S1 [Enterococcus faecalis R712] gi|291081121|gb|EFE18084.1| ribosomal protein S1 [Enterococcus faecalis S613] gi|294451581|gb|EFG20040.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1] gi|295112972|emb|CBL31609.1| SSU ribosomal protein S1P [Enterococcus sp. 7L76] gi|306497006|gb|EFM66554.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411] gi|306499802|gb|EFM69163.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109] gi|306505483|gb|EFM74669.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860] gi|306508422|gb|EFM77529.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134] gi|306510222|gb|EFM79246.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855] gi|306512528|gb|EFM81177.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248] gi|310626550|gb|EFQ09833.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512] gi|310633171|gb|EFQ16454.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635] gi|311289413|gb|EFQ67969.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516] gi|311292229|gb|EFQ70785.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470] gi|315027278|gb|EFT39210.1| putative ribosomal protein S1 [Enterococcus faecalis TX2137] gi|315029397|gb|EFT41329.1| putative ribosomal protein S1 [Enterococcus faecalis TX4000] gi|315033957|gb|EFT45889.1| putative ribosomal protein S1 [Enterococcus faecalis TX0017] gi|315036966|gb|EFT48898.1| putative ribosomal protein S1 [Enterococcus faecalis TX0027] gi|315147252|gb|EFT91268.1| putative ribosomal protein S1 [Enterococcus faecalis TX4244] gi|315150549|gb|EFT94565.1| putative ribosomal protein S1 [Enterococcus faecalis TX0012] gi|315164002|gb|EFU08019.1| putative ribosomal protein S1 [Enterococcus faecalis TX1302] gi|315169047|gb|EFU13064.1| putative ribosomal protein S1 [Enterococcus faecalis TX1341] gi|315172324|gb|EFU16341.1| putative ribosomal protein S1 [Enterococcus faecalis TX1346] gi|315575879|gb|EFU88070.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309B] gi|315577719|gb|EFU89910.1| putative ribosomal protein S1 [Enterococcus faecalis TX0630] gi|315580531|gb|EFU92722.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309A] gi|323480711|gb|ADX80150.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis 62] gi|327535120|gb|AEA93954.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1RF] Length = 403 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ DFGAF+ G DGLVH+S+++ + V K SD + G+ V VK+L + + Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 266 GRISLSIK 273 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ + + Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351 Query: 681 GKIKLSMKVVD 691 +I LS+K ++ Sbjct: 352 HRIALSIKALE 362 >gi|21225037|ref|NP_630816.1| transcriptional accessory protein [Streptomyces coelicolor A3(2)] gi|4584490|emb|CAB40693.1| putative transcriptional accessory protein [Streptomyces coelicolor A3(2)] Length = 780 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 641 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 699 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697 GD V VK++D D R +I L++++ D+ G+P Sbjct: 700 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 733 >gi|126172391|ref|YP_001048540.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS155] gi|125995596|gb|ABN59671.1| RNA binding S1 domain protein [Shewanella baltica OS155] Length = 787 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ + +G V V +FGAFV +DGLVHIS L+ + ++ VVK GD V VK+++ Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 712 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733 >gi|313496609|gb|ADR57975.1| S1 RNA-binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 774 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551] gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551] Length = 248 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ +R +S L+ GS L GDT+ I ++ D++ + G + Sbjct: 1 MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G + R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++ A +PI +A ++G+ G++ I+ Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGI--HGENSIL- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ +ED +D + T SG Sbjct: 174 -DLNYEEDSTAEVDMNIVMTGSG 195 >gi|289644109|ref|ZP_06476204.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] gi|289506078|gb|EFD27082.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata] Length = 484 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D + Sbjct: 214 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLE 272 Query: 680 RGKIKLSMKVVDQNTGK 696 R ++ LS+K ++ + Sbjct: 273 RERVSLSLKATQEDPWR 289 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD + VK++D D Sbjct: 297 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 356 Query: 679 -DRGKIKLSMKVVDQNTG 695 DR +I LS+K + ++ Sbjct: 357 LDRRRISLSLKQANDSSA 374 >gi|320139405|gb|EFW31283.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 133 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V + + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELSEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63 Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697 D GKI LS+K Q+T KP Sbjct: 64 ADDGKISLSIKKAKDRPRRQHTSKP 88 >gi|325110553|ref|YP_004271621.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305] gi|324970821|gb|ADY61599.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305] Length = 556 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V + D+GAFV G DGL+H+ +LS RV SDV++EG V VK+L D ++ KI Sbjct: 351 GTVKTIKDYGAFVDIGGV-DGLLHVRELSWTRVNHPSDVLQEGQQVEVKVLSIDQEKKKI 409 Query: 684 KLSMK 688 L MK Sbjct: 410 SLGMK 414 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 N + G V K DFGAFV +GL+HIS+L RV + DV+ EG ++L+ + Sbjct: 431 NTVVTGLVKKTTDFGAFVEIEPGLEGLIHISELDFRRVNRVEDVLTEGQETEAQVLEINK 490 Query: 679 DRGKIKLSMKVV 690 ++ +I LS+K + Sbjct: 491 NKKRISLSLKSI 502 >gi|261415158|ref|YP_003248841.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371614|gb|ACX74359.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 590 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E N++ KG V + DFGAF+ G DGL+HI+ +S +R+ S++++ G V V +LDF Sbjct: 210 EKNQVRKGIVKNITDFGAFIDLGGV-DGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDF 268 Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698 +D+ +I L MK + + K I Sbjct: 269 NDKKERISLGMKQLKPHPWKDI 290 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G++ + FGAFV DGL+H+S +S T+++ +++VK+GD V +L D ++ + Sbjct: 389 GEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKEKRR 448 Query: 683 IKLSMK 688 I LSMK Sbjct: 449 ISLSMK 454 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-DD 679 I KG+VV + D+GAFV +GL+H+S++S T+ V S ++ G V +L +D Sbjct: 299 IVKGKVVSITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEED 358 Query: 680 RGKIKLSMK 688 +I L MK Sbjct: 359 AERISLGMK 367 >gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H] gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H] Length = 553 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%) Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AE A R E++ S+ + EV KG V + D+GAFV G DGL+HI+ ++ +RV Sbjct: 176 AEGSAERDELLESLAEGQEV----KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVKH 230 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S++V GD + VK+L FD +R ++ L MK Sbjct: 231 PSEIVNVGDEIQVKVLKFDRERTRVSLGMK 260 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVLVL 333 Query: 676 DFD-DRGKIKLSMK 688 + D +R +I L +K Sbjct: 334 EIDEERRRISLGLK 347 Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I G+V +V GA + + +G + +S +S ER+ S V+K GD V + + D + Sbjct: 452 IVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVEARFMGVDRKN 511 Query: 682 K-IKLSMKVVDQ 692 + I LS+K DQ Sbjct: 512 RTISLSIKAKDQ 523 >gi|304385529|ref|ZP_07367873.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284] gi|304328033|gb|EFL95255.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284] Length = 149 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV R GLVHIS++S V V+K GD+V VK+L Sbjct: 4 EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS++ Sbjct: 64 ADDGKIALSIR 74 >gi|300691366|ref|YP_003752361.1| transcriptional accessory protein [Ralstonia solanacearum PSI07] gi|299078426|emb|CBJ51078.1| transcriptional accessory protein [Ralstonia solanacearum PSI07] Length = 779 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQVVKVKVMEVDVKR 725 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 726 NRIGLTMRLADE 737 >gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|308068003|ref|YP_003869608.1| hypothetical protein PPE_01222 [Paenibacillus polymyxa E681] gi|305857282|gb|ADM69070.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 740 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQL + V DVV GD V V +L+ D +G+ Sbjct: 666 QGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 725 Query: 683 IKLSMK 688 + L+MK Sbjct: 726 VGLTMK 731 >gi|170759608|ref|YP_001786542.1| 30S ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree] gi|169406597|gb|ACA55008.1| ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree] Length = 387 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/87 (49%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250 Query: 674 LLDFD-DRGKIKLSMKVVDQ---NTGK 696 +LDFD D KI LS+K V + NT K Sbjct: 251 VLDFDKDTKKIALSLKDVKKDPWNTAK 277 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D T KIA L+ + ++ + D V + +G VVK+++FGAFV +GLVH Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTAKDKYTVGSVVEGIVVKLLNFGAFVEVEKGIEGLVH 311 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 IS+++ E +AK S+ + GD V VK+L+ + D ++ LS+K + T KP Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358 >gi|148545516|ref|YP_001265618.1| RNA-binding S1 domain-containing protein [Pseudomonas putida F1] gi|148509574|gb|ABQ76434.1| RNA binding S1 domain protein [Pseudomonas putida F1] Length = 774 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330] Length = 710 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS+LST+ + S V+ GD TVWV LD +R Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|167771538|ref|ZP_02443591.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM 17241] gi|167666178|gb|EDS10308.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM 17241] Length = 662 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684 +VV + FGAF DGL+HISQ+S ERV K SDV+ G V VK+ + D ++ ++ Sbjct: 568 KVVSMTPFGAFAQIIPGIDGLIHISQISNERVNKPSDVLSIGQEVEVKITELDTEKKRVS 627 Query: 685 LSMKVVDQN 693 LS++ ++++ Sbjct: 628 LSIRALNED 636 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ + Y G V + +GAFV+ G DG+VHIS+LS R+ S+VV GDTV V + D Sbjct: 475 EIGRHYTGVVKSLTSYGAFVNL-GGVDGMVHISELSWHRIKHPSEVVNVGDTVDVYIKDI 533 Query: 678 D-DRGKIKLSMKVVDQN 693 D + KI L K + N Sbjct: 534 DAENKKISLGFKKAEDN 550 >gi|328850997|gb|EGG00156.1| hypothetical protein MELLADRAFT_93831 [Melampsora larici-populina 98AG31] Length = 462 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 P + KIY+G V V D+G FV G +G+VH++ +++ R+ SD+V V VK Sbjct: 233 PILFKIYQGTVTSVKDYGCFVSLEGISERSEGMVHVNLITSTRINHPSDLVSRNQKVKVK 292 Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695 ++ ++ LSMK VDQNTG Sbjct: 293 VMSIVG-TRLSLSMKDVDQNTG 313 >gi|322385171|ref|ZP_08058818.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100] gi|321270795|gb|EFX53708.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100] Length = 400 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV GD + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ DFGAFV DGLVHISQ+S +RV D +K G V VK+L+ + Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALKVGQEVTVKVLEVNAAA 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|304437100|ref|ZP_07397063.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370051|gb|EFM23713.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 153 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 + +FGAFV + GL+HIS+++ V+ D +KE D V VK+L DDRGKI LS+K Sbjct: 22 ITNFGAFVELPEGKTGLIHISEVADVYVSDVHDFLKEHDKVKVKVLTVDDRGKIGLSIKA 81 Query: 690 V 690 + Sbjct: 82 L 82 >gi|302541359|ref|ZP_07293701.1| putative transcriptional accessory protein [Streptomyces hygroscopicus ATCC 53653] gi|302458977|gb|EFL22070.1| putative transcriptional accessory protein [Streptomyces himastatinicus ATCC 53653] Length = 813 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVH+S +S V DVVK GD V VK+LD D R Sbjct: 668 ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRVKVLDVDIPR 727 Query: 681 GKIKLSMKVVD 691 +I L++++ D Sbjct: 728 KRISLTLRLDD 738 >gi|168025428|ref|XP_001765236.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683555|gb|EDQ69964.1| predicted protein [Physcomitrella patens subsp. patens] Length = 421 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 ++ G+V V +GAFV DGLVHIS+L+ + V + +DVV G V V++L+ +++ Sbjct: 139 VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 198 Query: 681 GKIKLSMK 688 G+I L+M+ Sbjct: 199 GRIALTMR 206 >gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716] Length = 410 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 6/86 (6%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+++ + + +G+V ++ +FGAF+ G DGLVH+S++S + V K +DV Sbjct: 189 EAAKKIFSELV----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPADV 243 Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ G V VK+L+ D +R +I LS+K Sbjct: 244 LEVGQEVKVKVLNVDPERERISLSIK 269 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +DV++ G V VK+L+ D Sbjct: 285 VGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVD 344 Query: 679 -DRGKIKLSMKVVDQ 692 +R ++ LS+K +++ Sbjct: 345 PERQRLGLSIKALEE 359 >gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] Length = 654 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%) Query: 616 VPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 VPE V + + +VV++ FGAFV +GL+HIS + V K DV+KEGD V V Sbjct: 548 VPEKYPVGSLVEVKVVRLAPFGAFVELEPGVEGLIHISHFADWHVEKPEDVLKEGDVVTV 607 Query: 673 KLLDFDDRGK-IKLSMK 688 +++ FD + K ++LS++ Sbjct: 608 RVISFDPQEKRLRLSLR 624 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V +++ FGAF+ G DGL+H+S+++ RV +V+KEG + VK++ D + Sbjct: 472 VVKGVVRRIVPFGAFIDLGGV-DGLLHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVDREN 530 Query: 681 GKIKLSMKVV 690 K+ LS K + Sbjct: 531 EKVSLSRKAL 540 >gi|86738935|ref|YP_479335.1| RNA binding S1 [Frankia sp. CcI3] gi|86565797|gb|ABD09606.1| RNA binding S1 [Frankia sp. CcI3] Length = 864 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%) Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E I ++ D VP + +G V V FGAFV +DGLVH+S +S V+ +VVK Sbjct: 651 EGIETLADLVPGMT--LEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVVKP 708 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ-NTGKP 697 GD V VK+LD D R +I L++++ D+ G P Sbjct: 709 GDIVTVKVLDVDIPRKRISLTLRLDDEAGAGGP 741 >gi|325272397|ref|ZP_08138792.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51] gi|324102474|gb|EGB99925.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51] Length = 774 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|254361237|ref|ZP_04977380.1| ribosomal protein S1 [Mannheimia haemolytica PHL213] gi|153092733|gb|EDN73776.1| ribosomal protein S1 [Mannheimia haemolytica PHL213] Length = 555 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V + D+GAFV G DGL+HI+ ++ +RV S+VV GD V VK+L FD D+ + Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTR 254 Query: 683 IKLSMKVVDQN 693 + L +K + Q+ Sbjct: 255 VSLGLKQLGQD 265 >gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177'] gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii RSA 334] gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177'] gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii RSA 334] Length = 551 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E + E + ++ E +I KG + + D+GAFV G DGL+HI+ Sbjct: 161 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 218 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ RV SD++ GD V VK+L FD D+ ++ L MK Sbjct: 219 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 256 Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN G+V + D+G FV +GLVH S+L T + S VV+ G+ V V +L+ Sbjct: 272 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 331 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +N Sbjct: 332 DEERRRISLGIKQCKRN 348 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + DFG F+ G DGLVH+S +S TE + K+GD V +L D +R + Sbjct: 365 GKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERER 424 Query: 683 IKLSMKVVDQNTGKPIV 699 I L +K Q G P + Sbjct: 425 ISLGIK---QLEGDPFM 438 >gi|261492540|ref|ZP_05989093.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495207|ref|ZP_05991669.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309132|gb|EEY10373.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311699|gb|EEY12849.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 555 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V + D+GAFV G DGL+HI+ ++ +RV S+VV GD V VK+L FD D+ + Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTR 254 Query: 683 IKLSMKVVDQN 693 + L +K + Q+ Sbjct: 255 VSLGLKQLGQD 265 >gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331] gi|81629367|sp|Q83E09|RS1_COXBU RecName: Full=30S ribosomal protein S1 gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331] Length = 551 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E + E + ++ E +I KG + + D+GAFV G DGL+HI+ Sbjct: 161 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 218 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 ++ RV SD++ GD V VK+L FD D+ ++ L MK Sbjct: 219 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 256 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 VN G+V + D+G FV +GLVH S+L T + S VV+ G+ V V +L+ Sbjct: 272 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 331 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +N Sbjct: 332 DEERRRISLGIKQCKRN 348 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657 SL + R + + E ++ G+V + DFG F+ G DGLVH+S +S TE Sbjct: 339 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 398 Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 + K+GD V +L D +R +I L +K Q G P + Sbjct: 399 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 438 >gi|17546342|ref|NP_519744.1| transcription accessory protein [Ralstonia solanacearum GMI1000] gi|17428639|emb|CAD15325.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 779 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 725 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 726 NRIGLTMRLTDE 737 >gi|328552793|gb|AEB23285.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208] Length = 378 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G+V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD ++ Sbjct: 271 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 330 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 331 ERISLSMRELEE 342 Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D + +K+ +D I LS + VD + Sbjct: 62 NVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|302344133|ref|YP_003808662.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075] gi|301640746|gb|ADK86068.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075] Length = 582 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 V E N + +G V + D+G FV G DGL+HI+ +S RV SD+ GD + VK+L Sbjct: 209 VLEENAVMRGVVKNITDYGVFVDLGGI-DGLLHITDMSWGRVGHPSDMFHIGDEITVKVL 267 Query: 676 DFD-DRGKIKLSMK 688 +FD DR ++ L +K Sbjct: 268 NFDRDRERVSLGLK 281 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+VV + D+GAFV +GL+H+S++S T +V S +V GD V +L + K Sbjct: 302 RGKVVSLADYGAFVEVDEGIEGLIHVSEMSWTRKVRHPSKIVNVGDEVEAVVLSLNPESK 361 Query: 683 -IKLSMKVVDQN 693 I L MK V+ N Sbjct: 362 RISLGMKQVEPN 373 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRGK 682 G V V DFG FV +GL+H+S++S +++ + + GDT+ K+ DR K Sbjct: 477 GVVTNVTDFGVFVELEEGVEGLIHVSEISGDKIKTPVGMFEIGDTITAKVTSISRKDR-K 535 Query: 683 IKLSMKVVDQ 692 I LSM+ +D+ Sbjct: 536 IGLSMRRLDE 545 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +G+V V DFG F+ DGLVH+S +S ++R+ ++ K+GD V +L+ D Sbjct: 389 EGRVKNVTDFGLFIGIDEGIDGLVHVSDISWSKRIKHPGEIYKKGDEVRAVVLNID 444 >gi|168025430|ref|XP_001765237.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683556|gb|EDQ69965.1| predicted protein [Physcomitrella patens subsp. patens] Length = 899 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 ++ G+V V +GAFV DGLVHIS+L+ + V + +DVV G V V++L+ +++ Sbjct: 67 VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 126 Query: 681 GKIKLSMK 688 G+I L+M+ Sbjct: 127 GRIALTMR 134 >gi|23015945|ref|ZP_00055708.1| COG2183: Transcriptional accessory protein [Magnetospirillum magnetotacticum MS-1] Length = 784 Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ D+ + I +G V V +FGAFV +DGLVHIS L+ V +VVK Sbjct: 653 KEGVETLNDL-KPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKP 711 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689 GD V VK+L+ D R +I LSM++ Sbjct: 712 GDLVKVKVLEVDLKRQRIALSMRM 735 >gi|251798940|ref|YP_003013671.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] gi|247546566|gb|ACT03585.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] Length = 747 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAF+ DGLVHISQ+S + V DVV GD TVWV +D +G Sbjct: 679 QGTVRNVIDFGAFIDIGIKNDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLGVDL-KKG 737 Query: 682 KIKLSMK 688 ++ L+M+ Sbjct: 738 RVSLTMR 744 >gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016] gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112] gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3] gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A] gi|300910087|ref|ZP_07127547.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112] gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A] gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016] gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112] gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3] gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A] gi|300892735|gb|EFK86095.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112] gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A] Length = 416 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V+ + G V ++ FGAFV +GLVHISQ+S + +A +DV+K G V VK+++ D Sbjct: 286 VDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVD 345 Query: 679 -DRGKIKLSMKVVDQ 692 + ++ LSMK +++ Sbjct: 346 PEHQRLGLSMKALEE 360 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V ++ +FGAF+ G DGLVH+S++S + V K SDV+ G V VK+L D +R Sbjct: 204 VVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPER 262 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 263 ERISLSIK 270 >gi|104779512|ref|YP_606010.1| RNA-binding transcription accessory protein [Pseudomonas entomophila L48] gi|95108499|emb|CAK13193.1| putative RNA-binding transcription accessory protein [Pseudomonas entomophila L48] Length = 775 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310] gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310] Length = 478 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G+ V V++LD D D Sbjct: 207 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMD 265 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 266 RERVSLSLKATQED 279 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VVK G+ V+VK++D D Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 350 LERRRISLSLKQANE 364 >gi|313905272|ref|ZP_07838639.1| Tex-like protein [Eubacterium cellulosolvens 6] gi|313469883|gb|EFR65218.1| Tex-like protein [Eubacterium cellulosolvens 6] Length = 734 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVK 665 R + S+ D+ E I KG V V+DFGAFV +DGLVHIS++S + K DVV Sbjct: 649 RSDVLSMEDLKE-GMILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDRKFVKHPLDVVS 707 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK++ D + +I LSMK ++ Sbjct: 708 VGDIVKVKVISVDLSKKRIGLSMKGIE 734 >gi|308066886|ref|YP_003868491.1| hypothetical protein PPE_00051 [Paenibacillus polymyxa E681] gi|305856165|gb|ADM67953.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 174 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V +D +K D V VK+++ Sbjct: 4 EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVMVKVINV 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K Q KP Sbjct: 64 DKDGKIGLSIK---QTIDKP 80 >gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 484 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D + Sbjct: 210 QIRKGIVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDME 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FGAFV +GLVH+S+L+ V VV GD V VK++D Sbjct: 292 QIGEIVPGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDI 351 Query: 678 D-DRGKIKLSMKVVDQ 692 D +R +I LS+K ++ Sbjct: 352 DLERRRISLSLKQANE 367 >gi|297559937|ref|YP_003678911.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 496 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E+ ++ + + +I KG V +++FGAFV G DGLVH+S+LS + + S+VV+ G Sbjct: 199 EVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVG 257 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693 V V++LD D +R ++ LS+K ++ Sbjct: 258 QEVTVEVLDVDMERERVSLSLKATQED 284 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ G ++VK++D Sbjct: 294 QIGQVVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGTEIFVKIIDI 353 Query: 678 D-DRGKIKLSMKVVDQN 693 D DR +I LS+K +++ Sbjct: 354 DLDRRRISLSLKQANES 370 >gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434] gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434] Length = 483 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VVK G+ V+VK++D D Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDID 352 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 353 LERRRISLSLK 363 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 210 QVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFD 268 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 269 RERVSLSLKATQED 282 >gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC 17982] gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309] gi|153798485|gb|EDN80905.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC 17982] gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309] Length = 478 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VVK G+ V+VK++D D Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 350 LERRRISLSLKQANE 364 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 207 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 266 RERVSLSLKATQED 279 >gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2] gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1] gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3] gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08] Length = 252 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 27/204 (13%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +RD+ + G L + GS L G T + ++ E G+ Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 69 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRR-EIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426 Y LP AT E R G SRR +IG RL R++ V+ A T+ + Sbjct: 70 WVTAEYEMLPRATNE--RSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILD 127 Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL+DA G PI+ V I++G+V + Sbjct: 128 CDVLQADGGTRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGG----VP 183 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D++ +ED D V + SG Sbjct: 184 MLDLAYEEDSRADTDMNVVMSGSG 207 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 30/231 (12%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 24 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 82 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 83 NERSG----RESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQAD--GG 136 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L G P G V V + G +L+ +ED + Sbjct: 137 TRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGGVPMLDLAYEEDSRAD 196 Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221 +++ +SG+ D V + E + D++ + + C + +A S++ Sbjct: 197 TDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEV 247 >gi|299066633|emb|CBJ37826.1| transcriptional accessory protein [Ralstonia solanacearum CMR15] Length = 802 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 689 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 748 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 749 NRIGLTMRLTDE 760 >gi|18311456|ref|NP_563390.1| hypothetical protein CPE2474 [Clostridium perfringens str. 13] gi|110801416|ref|YP_697162.1| hypothetical protein CPF_2797 [Clostridium perfringens ATCC 13124] gi|110802862|ref|YP_699730.1| hypothetical protein CPR_2483 [Clostridium perfringens SM101] gi|168206869|ref|ZP_02632874.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168218338|ref|ZP_02643963.1| RNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343178|ref|ZP_02864199.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182627411|ref|ZP_02955025.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18146140|dbj|BAB82180.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110676063|gb|ABG85050.1| RNA-binding protein [Clostridium perfringens ATCC 13124] gi|110683363|gb|ABG86733.1| RNA-binding protein [Clostridium perfringens SM101] gi|169298730|gb|EDS80806.1| RNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170661722|gb|EDT14405.1| RNA-binding protein [Clostridium perfringens E str. JGS1987] gi|177907094|gb|EDT69975.1| RNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182379661|gb|EDT77140.1| RNA-binding protein [Clostridium perfringens NCTC 8239] Length = 134 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G+++ + +FGAFV G + GLVHIS+++ V + +KE D V VK++ DD+G Sbjct: 8 ILEGRIINITNFGAFVEVEG-KTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKG 66 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 67 KISLSIK 73 >gi|325912014|ref|ZP_08174416.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D] gi|325476199|gb|EGC79363.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D] Length = 395 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682 +G+V ++ FGAF++ G DGLVHIS++S + + K SDV+K G V VK++ DDR + Sbjct: 202 EGKVSRLTGFGAFINVGGV-DGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRR 260 Query: 683 IKLSMK 688 I LS+K Sbjct: 261 ISLSIK 266 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I G+V + FGAF+ GLVH+S++S +RV K SD +K G TV VK+L D Sbjct: 285 IIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSD 344 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 345 KRISLSIK 352 >gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988] Length = 248 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++ +G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLDEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8] gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8] Length = 791 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%) Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V +N +Y G V++ V +FGAFV +DGLVHIS L+ + V DVV+ G TV Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 VK+L+ D R ++ L+M++ D Sbjct: 721 SVKVLEVDAARKRVALTMRLND 742 >gi|259500657|ref|ZP_05743559.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335] gi|302191346|ref|ZP_07267600.1| 30S ribosomal protein S1 [Lactobacillus iners AB-1] gi|309804181|ref|ZP_07698259.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d] gi|309805734|ref|ZP_07699774.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c] gi|309807097|ref|ZP_07701076.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b] gi|309807721|ref|ZP_07701656.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a] gi|309809307|ref|ZP_07703176.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D] gi|312871404|ref|ZP_07731499.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a] gi|312872369|ref|ZP_07732439.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1] gi|312873932|ref|ZP_07733968.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d] gi|312875507|ref|ZP_07735510.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b] gi|315653508|ref|ZP_07906429.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195] gi|325912878|ref|ZP_08175256.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B] gi|329921336|ref|ZP_08277774.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G] gi|259168041|gb|EEW52536.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335] gi|308163764|gb|EFO66033.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d] gi|308164987|gb|EFO67230.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c] gi|308166527|gb|EFO68727.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b] gi|308169032|gb|EFO71115.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a] gi|308170420|gb|EFO72444.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D] gi|311089018|gb|EFQ47459.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b] gi|311090481|gb|EFQ48889.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d] gi|311092192|gb|EFQ50566.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1] gi|311093057|gb|EFQ51406.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a] gi|315489199|gb|EFU78840.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195] gi|325477871|gb|EGC81005.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B] gi|328934628|gb|EGG31132.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G] Length = 395 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682 +G+V ++ FGAF++ G DGLVHIS++S + + K SDV+K G V VK++ DDR + Sbjct: 202 EGKVSRLTGFGAFINVGGV-DGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRR 260 Query: 683 IKLSMK 688 I LS+K Sbjct: 261 ISLSIK 266 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + G+V + FGAF+ GLVH+S++S +RV K SD +K G TV VK+L D Sbjct: 285 VIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSD 344 Query: 682 K-IKLSMK 688 K I LS+K Sbjct: 345 KRISLSIK 352 >gi|256783809|ref|ZP_05522240.1| transcriptional accessory protein [Streptomyces lividans TK24] Length = 780 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 641 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 699 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697 GD V VK++D D R +I L++++ D+ G+P Sbjct: 700 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 733 >gi|310659605|ref|YP_003937326.1| transcriptional accessory protein [Clostridium sticklandii DSM 519] gi|308826383|emb|CBH22421.1| transcriptional accessory protein [Clostridium sticklandii] Length = 717 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 14/143 (9%) Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAA 606 EFT +VE +++ I + +G +R IV E + +I D+G ++A I Sbjct: 585 EFTSKVEELSL--RDIAQELEIGLPTLRDIVKELSKPGRDIRDEG-------AMAPI--L 633 Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R I + D+ E+ I +G V V+DFGAFV DGLVHISQLS + V +VV Sbjct: 634 RSDILKLEDL-EIGMILQGTVRNVVDFGAFVDIGIKNDGLVHISQLSDKYVKNPMEVVSV 692 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 GD V V+++D D RGK+ LSMK Sbjct: 693 GDVVEVRVIDIDRQRGKVSLSMK 715 >gi|311277659|ref|YP_003939890.1| Tex-like protein protein [Enterobacter cloacae SCF1] gi|308746854|gb|ADO46606.1| Tex-like protein protein [Enterobacter cloacae SCF1] Length = 777 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+L+ D R Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLPR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|319891461|ref|YP_004148336.1| RNA binding protein, contains ribosomal protein S1 domain protein [Staphylococcus pseudintermedius HKU10-03] gi|317161157|gb|ADV04700.1| RNA binding protein, contains ribosomal protein S1 domain protein [Staphylococcus pseudintermedius HKU10-03] gi|323465369|gb|ADX77522.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius ED99] Length = 125 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 40/71 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLTVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 ADDGKISLSIK 74 >gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM 7] gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog) [Bacillus amyloliquefaciens DSM 7] gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3] Length = 382 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G+V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD ++ Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 334 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 335 ERISLSMRELEE 346 Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 D + +K+ +D I LS + VD + Sbjct: 62 NVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 253 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 R DGR + +R +S L GS L G T+ +V ++ E G+ Sbjct: 9 TRSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASV----TEGVPRWRRGSGL 64 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT SR G S R RL R++ V+ A T+ + + Sbjct: 65 GWVTSEYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDA 124 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +AL DA G P++ V+ I++G+VK + + Sbjct: 125 DVLQADGGTRTASITGAYVALHDAVEWLRERGSLAGEPLTGSVSAISVGIVKG----VPM 180 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ DED +D + T +G Sbjct: 181 LDLAYDEDSTADVDMNIVATGTG 203 >gi|290955864|ref|YP_003487046.1| transcriptional accessory protein [Streptomyces scabiei 87.22] gi|260645390|emb|CBG68476.1| putative transcriptional accessory protein [Streptomyces scabiei 87.22] Length = 794 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGL H+S LS V DVVK GD V VK+LD D R Sbjct: 660 VLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKVKVLDVDIPR 719 Query: 681 GKIKLSMKVVDQNTGK 696 +I L++++ D+ K Sbjct: 720 KRISLTLRLDDEAAPK 735 >gi|225868407|ref|YP_002744355.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus] gi|225701683|emb|CAW99009.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus] Length = 400 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTVKVLDVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA++ + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262 >gi|194015965|ref|ZP_03054580.1| protein YhgF [Bacillus pumilus ATCC 7061] gi|194012320|gb|EDW21887.1| protein YhgF [Bacillus pumilus ATCC 7061] Length = 719 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V DVV GD TVWV +D +G Sbjct: 651 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVD-QAKG 709 Query: 682 KIKLSM 687 ++ LSM Sbjct: 710 RVALSM 715 >gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822] gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis] Length = 791 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V DVV+ G TV VK+L+ D R Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731 Query: 681 GKIKLSMKVVDQNTGKP 697 ++ L+M++ D T +P Sbjct: 732 KRVALTMRLND--TAEP 746 >gi|289767691|ref|ZP_06527069.1| transcriptional accessory protein [Streptomyces lividans TK24] gi|289697890|gb|EFD65319.1| transcriptional accessory protein [Streptomyces lividans TK24] Length = 787 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + +G V V FGAFV +DGLVH+S +S V DVVK Sbjct: 648 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 706 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697 GD V VK++D D R +I L++++ D+ G+P Sbjct: 707 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 740 >gi|225870666|ref|YP_002746613.1| 30S ribosomal protein S1 [Streptococcus equi subsp. equi 4047] gi|225700070|emb|CAW94132.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp. equi 4047] Length = 400 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTVKVLDVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA++ + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262 >gi|225389317|ref|ZP_03759041.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme DSM 15981] gi|225044618|gb|EEG54864.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme DSM 15981] Length = 660 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V ++ DFGAF+ D L+H+SQ+S E V K SDV++ G + +++DF++ KI Sbjct: 573 GRVARMTDFGAFIELEPGVDALLHVSQISREHVEKPSDVLRIGQEIEARVVDFNENDHKI 632 Query: 684 KLSMKVV 690 LS+K + Sbjct: 633 SLSIKAL 639 >gi|221068177|ref|ZP_03544282.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1] gi|220713200|gb|EED68568.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1] Length = 793 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E +G V V FGAFV +DGLVH+SQ+S + + +VVK G Sbjct: 655 VEDIKDLKE-GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQI 713 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V VK+L+ D DR +I L+MK+ Sbjct: 714 VKVKVLEVDVDRKRISLTMKL 734 >gi|270290203|ref|ZP_06196429.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici 7_4] gi|270281740|gb|EFA27572.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici 7_4] Length = 153 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV R GLVHIS++S V V+K GD+V VK+L Sbjct: 4 EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS++ Sbjct: 64 ADDGKIALSIR 74 >gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54] Length = 791 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%) Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V +N +Y G V++ V +FGAFV +DGLVHIS L+ + V DVV+ G TV Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 VK+L+ D R ++ L+M++ D Sbjct: 721 SVKVLEVDVARKRVALTMRLND 742 >gi|253690273|ref|YP_003019463.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756851|gb|ACT14927.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 777 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|157691241|ref|YP_001485703.1| RNA binding transcriptional accessory protein [Bacillus pumilus SAFR-032] gi|157679999|gb|ABV61143.1| RNA binding transcriptional accessory protein [Bacillus pumilus SAFR-032] Length = 719 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V DVV GD TVWV +D +G Sbjct: 651 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVD-QAKG 709 Query: 682 KIKLSM 687 ++ LSM Sbjct: 710 RVALSM 715 >gi|21672576|ref|NP_660643.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2500382|sp|Q44653|RS1_BUCAP RecName: Full=30S ribosomal protein S1 gi|1448954|gb|AAC05429.1| ribosomal protein S1 [Buchnera aphidicola] gi|21623204|gb|AAM67854.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 559 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 23/201 (11%) Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554 Q+D+ + I + +++ ++AKR ++ E + SE+ + + G FT + E Sbjct: 67 QIDVALDAIEDGFGETLLSREKAKRHEAWLILEQAHEKSETVIGIINGKVKGGFTVELNE 126 Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 I A P +R+ I + GK + V + K N V ++ ++ E E + E Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 + + + E +I KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD Sbjct: 182 RDQLLESLQEGIEI-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239 Query: 669 TVWVKLLDFD-DRGKIKLSMK 688 + VK+L FD +R ++ L +K Sbjct: 240 EINVKILKFDKERTRVSLGLK 260 Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHIS----QLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 G++ + DFG F+ G DGLVH+S ++S E K K+GD + +L D + Sbjct: 369 GKIKSITDFGIFIGLKGGIDGLVHLSDISWKISGEEAVKN---YKKGDEISAVVLQVDAE 425 Query: 680 RGKIKLSMKVVDQN 693 R +I L +K ++++ Sbjct: 426 RERISLGIKQLEED 439 >gi|330444481|ref|YP_004377467.1| 30S ribosomal protein S1 [Chlamydophila pecorum E58] gi|328807591|gb|AEB41764.1| ribosomal protein S1 [Chlamydophila pecorum E58] Length = 580 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G +++++ EIEA M + +D+ G V K+ FGAFV +GL+H+S Sbjct: 460 GVKQLSANPWDEIEA---MFPAGSDIS-------GVVTKITAFGAFVELQNGIEGLIHVS 509 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +LS + AK D++ GDTV K++ D D K+ LS+K Sbjct: 510 ELSEKPFAKVEDIISIGDTVHAKVIKLDPDHKKVSLSVK 548 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G++VK++ +GAF+ +GL+HIS++S + V S++V +GD V +L D GK Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNVVDPSEIVNKGDEVEAIVLSIQKDEGK 369 Query: 683 IKLSMKVVDQN 693 I L +K + N Sbjct: 370 ISLGLKQTEHN 380 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%) Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662 I E+I IT + ++ KG V + DFG F+ G DGL+HI+ ++ +R+ S+ Sbjct: 207 ISKKAELIEQIT----IGELRKGIVKNITDFGVFLDLDGI-DGLLHITDMTWKRIRHPSE 261 Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 +V+ + V +L D ++G++ L +K + N + I Sbjct: 262 MVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 298 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 K ++ + ++GAFV +GL+HIS +S ++V+ S++ K+GD V +L D + Sbjct: 396 KAEIRNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGDVVEAVILSVDKESK 455 Query: 682 KIKLSMKVVDQN 693 KI L +K + N Sbjct: 456 KITLGVKQLSAN 467 >gi|299530284|ref|ZP_07043709.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni S44] gi|298721655|gb|EFI62587.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni S44] Length = 793 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVH+SQ+S + + +VVK G V VK+L+ D DR + Sbjct: 668 EGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKVLEVDVDRKR 727 Query: 683 IKLSMKV 689 I L+MK+ Sbjct: 728 ISLTMKL 734 >gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553] gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553] Length = 792 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%) Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 V +N +Y G V++ V +FGAFV +DGLVHIS L+ + V DVV+ G TV Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 VK+L+ D R ++ L+M++ D Sbjct: 721 SVKVLEVDVARKRVALTMRLND 742 >gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542] gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542] Length = 496 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD V+VK++D D Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKVIDID 354 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 355 LERRRISLSLKQANE 369 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A +E + +RS + ++ G V +++FGAFV G DGLVH+S+LS + Sbjct: 188 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 246 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + +VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 247 IDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 284 >gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae] gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16] Length = 240 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ + RMDGR +R+I+ ++GL + GS G+T+ + V G E + Sbjct: 2 SIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYESKA--- 57 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 S R + Y+ + E R+ RL +A V+ T FP + + Sbjct: 58 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVI-LTESFPRSQI 116 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468 I E+ + DGS+ A V +SLAL DAG+P+ + G+V+ Sbjct: 117 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVE 161 >gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus 1_2_62CV] gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus 1_2_62CV] Length = 712 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675 ++ + +G V V+DFGAFV DGL+HIS+LS V S VV GD TVWV L Sbjct: 635 QIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSVGDLVTVWVDKL 694 Query: 676 DFDDRGKIKLSM 687 D +R K+ LS+ Sbjct: 695 DI-EREKVNLSL 705 >gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] Length = 248 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 24/244 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R +GR + +R I + GS L + GDTQ I ++ +E L G R Sbjct: 9 IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASI----EESVPPFLRGRGR 64 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP +T A R+ G RL R+I A TLR+ Sbjct: 65 GWLTAEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDC 124 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G +A DA VP+ VA I++G+++ + + Sbjct: 125 DVIQADGGTRTASISGVMIAAYDAFSLMVEEGLIEKVPLRHFVAAISVGVIQG----VPM 180 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D+ ED D V T++G +Q + G S +++ L A++G +++ Sbjct: 181 LDLDYQEDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQ 240 Query: 536 SKVL 539 +VL Sbjct: 241 KRVL 244 >gi|227112180|ref|ZP_03825836.1| putative RNA binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 777 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|154502590|ref|ZP_02039650.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149] gi|153796782|gb|EDN79202.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 I +P + + G V + ++GAFV GLVH+SQ+S +RV + V+ GD V V Sbjct: 124 IASIP-IGTVMSGTVETLQNYGAFVKLENGLSGLVHVSQISQKRVKNPAAVLNVGDEVQV 182 Query: 673 KLLDFDDRGKIKLSMKVV 690 K++ D GKI LSMK + Sbjct: 183 KVIGIKD-GKISLSMKAL 199 >gi|170724124|ref|YP_001751812.1| RNA-binding S1 domain-containing protein [Pseudomonas putida W619] gi|169762127|gb|ACA75443.1| RNA binding S1 domain protein [Pseudomonas putida W619] Length = 774 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + V + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903] gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903] Length = 399 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|296876572|ref|ZP_06900622.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912] gi|296432391|gb|EFH18188.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912] Length = 399 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 459 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+V + DFGAFV GA DGLVH+S+LS RV S+V+K G+ V V +L + + K Sbjct: 232 RGRVTSITDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKK 290 Query: 683 IKLSMK 688 I LS+K Sbjct: 291 IALSIK 296 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV ++ G V ++ +FGAF +GL+H+S+LS +R+ VV EG + ++++ Sbjct: 311 EVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSELSEQRIGHPRQVVSEGQDLILRIIRI 370 Query: 678 DD-RGKIKLSMK 688 D R ++ LS++ Sbjct: 371 DPARRRMGLSLR 382 >gi|227329718|ref|ZP_03833742.1| putative RNA binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 777 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell isolate TM7c] Length = 358 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +E EA ++ + + V +G V V+DFG FV+ G +GLVHIS++S ERV Sbjct: 181 FSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFGVFVNVEGI-EGLVHISEISWERVNN 239 Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 SD VK G T+ K++ D+ ++ LSMK + Q+ Sbjct: 240 PSDYVKTGQTIKAKIIAI-DKDRLSLSMKQLTQD 272 >gi|113867443|ref|YP_725932.1| transcriptional accessory protein [Ralstonia eutropha H16] gi|113526219|emb|CAJ92564.1| transcriptional accessory protein [Ralstonia eutropha H16] Length = 784 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS++ V +VVK G V VK+++ D R Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSSKFVKDAHEVVKAGQIVKVKVMEVDVKR 724 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ D+ Sbjct: 725 NRIGLSMRLDDE 736 >gi|116669460|ref|YP_830393.1| RNA-binding S1 domain-containing protein [Arthrobacter sp. FB24] gi|116609569|gb|ABK02293.1| RNA binding S1 domain protein [Arthrobacter sp. FB24] Length = 861 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ I +G V V FGAFV +DGLVH+S L+ V+ +VVK G Sbjct: 681 EGIEKISDL-RPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSG 739 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+L+ D +R +I L++++ D+ Sbjct: 740 QVVRVKVLEADPERKRISLTLRLDDE 765 >gi|325283658|ref|YP_004256199.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus MRP] gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP] Length = 610 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681 ++G VV++ DFG FV+ G DGLVH S+L+ R +VV GD V V+++D D+ R Sbjct: 250 FEGTVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPREVVAVGDKVKVQVIDVDESRE 308 Query: 682 KIKLSMK 688 +I LSMK Sbjct: 309 RINLSMK 315 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 KGQV + DFG F+ +GL+HIS+L +RV +D+ K+GD + +L+ D Sbjct: 423 KGQVTGLTDFGVFMEIEEGIEGLIHISELDIQRVNNPADLFKKGDEIEAVILNID 477 Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%) Query: 602 EIEAAREMI----RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 +++ +RE I +S+T+ P + + KG+V + +FGAFV +GLVH+ Sbjct: 302 DVDESRERINLSMKSLTNDPWEGAMERYSIGQRVKGKVTNLTNFGAFVELEPGLEGLVHV 361 Query: 650 SQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 S++S T+RV ++V+ EG+ +L D Sbjct: 362 SEMSWTKRVRHPNEVLTEGEEAEAVILRMD 391 >gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332] Length = 486 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VVK G+ V+VK++D D Sbjct: 294 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDID 353 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 354 LERRRISLSLKQANE 368 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G + +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 211 QVRDGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLDVDMD 269 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 270 RERVSLSLKATQED 283 >gi|262404268|ref|ZP_06080823.1| SSU ribosomal protein S1p [Vibrio sp. RC586] gi|262349300|gb|EEY98438.1| SSU ribosomal protein S1p [Vibrio sp. RC586] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|154483595|ref|ZP_02026043.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] gi|149735505|gb|EDM51391.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 9/96 (9%) Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 +AE EAA+ +++ + EV + G V V+DFGAF+ GA DGL+HIS++S RV Sbjct: 176 VAEKEAAK---KALFEKIEVGQTVTGVVKSVVDFGAFIDIGGA-DGLLHISEMSWGRVGN 231 Query: 660 TSDVVKEGD--TVWVKLLDFDDRGKIKLSMKVVDQN 693 + K GD T ++K ++ D KI LS+K D N Sbjct: 232 PRKLFKPGDEVTAFIKEINGD---KIALSLKFEDTN 264 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ++ V K SD + G + K++DF+ Sbjct: 275 VGVVVTGKVARMTDFGAFVEIEPGVDALLHVSQIANHHVDKPSDELTIGQEIEAKIVDFN 334 Query: 679 -DRGKIKLSMKVV 690 + KI LSMK + Sbjct: 335 EEEKKISLSMKAL 347 >gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio] gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio] gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio] gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio] Length = 245 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 34/219 (15%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R + A++ + + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKS 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418 + ++ Q Y+ +T E RR G + + ++H L QT + Sbjct: 66 LHDRAIINCQ-------YSMATFSTAE------RKRRPHGDRKSSEMSLH--LKQTFEAA 110 Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P + + I +I ++DG + A V ++LAL+DAG+P+ V + G V+D Sbjct: 111 VLTELYPRSQIDIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVED--- 167 Query: 473 FIILSDISGDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509 L+D+ E+ G +A I +QMD ++ Sbjct: 168 -TPLADLCHAEESGGGTALALALLPRSGNIALLQMDARL 205 >gi|27366257|ref|NP_761785.1| 30S ribosomal protein S1 [Vibrio vulnificus CMCP6] gi|27362458|gb|AAO11312.1| ribosomal protein S1 [Vibrio vulnificus CMCP6] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|37679484|ref|NP_934093.1| 30S ribosomal protein S1 [Vibrio vulnificus YJ016] gi|320156766|ref|YP_004189145.1| 30S ribosomal protein S1p [Vibrio vulnificus MO6-24/O] gi|37198228|dbj|BAC94064.1| ribosomal protein S1 [Vibrio vulnificus YJ016] gi|319932078|gb|ADV86942.1| SSU ribosomal protein S1p [Vibrio vulnificus MO6-24/O] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N] gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N] Length = 790 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V DVV+ G TV VK+L+ D R Sbjct: 672 LLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVQR 731 Query: 681 GKIKLSMKVVDQ 692 ++ L+M++ D Sbjct: 732 KRVALTMRLNDN 743 >gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis] gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis] Length = 616 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I S+ D+ I +G V V +FGAFV +DGLVHIS LS V DVV+ Sbjct: 380 QEGINSLNDLTP-GMILEGVVTNVANFGAFVDVGVHQDGLVHISALSETFVKDPRDVVRV 438 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696 G TV VK+ + D R +I L+M++ D + K Sbjct: 439 GQTVKVKVQEVDVARKRIGLTMRLNDDSAPK 469 >gi|182414675|ref|YP_001819741.1| ribosomal protein S1 [Opitutus terrae PB90-1] gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1] Length = 557 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V K+ FGAFV DGLVHISQ+S ER+ K DV+K G V +++ D Sbjct: 445 IGDVVTGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKID 504 Query: 679 -DRGKIKLSMKVVD 691 + ++ LS+K + Sbjct: 505 REERRLGLSIKAAN 518 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R++ D + +I +G V + DFGAF+ G DGL+HI+ +S R++ S+++K+G+ V Sbjct: 178 RALLDSIQPGQIRRGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRISHPSEMLKQGEEV 236 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693 V +++ + ++ ++ L +K +N Sbjct: 237 QVMIIEVNREKERVSLGLKQTTKN 260 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +G+V + +GAF+ DG+VH+S +S T +V S+++K+GD V +LD D + Sbjct: 363 RGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422 Query: 682 KIKLSMK 688 +I L MK Sbjct: 423 RISLGMK 429 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 38/161 (23%) Query: 571 GKVIRGIVEQT---GAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVP--------- 617 G++ RG+V+ GA +++D DG + I S I EM++ +V Sbjct: 187 GQIRRGVVKNITDFGAFIDLDGMDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNRE 246 Query: 618 -----------------EVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLS- 653 E+++ Y G+VV ++ +GAFV +GLVHI+++S Sbjct: 247 KERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSW 306 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 T+R+ K S+++K G + +L + KI L ++ ++ N Sbjct: 307 TKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPN 347 >gi|24379626|ref|NP_721581.1| 30S ribosomal protein S1 [Streptococcus mutans UA159] gi|290580374|ref|YP_003484766.1| putative ribosomal protein S1 [Streptococcus mutans NN2025] gi|24377577|gb|AAN58887.1|AE014956_8 putative ribosomal protein S1; sequence specific DNA-binding protein [Streptococcus mutans UA159] gi|254997273|dbj|BAH87874.1| putative ribosomal protein S1 [Streptococcus mutans NN2025] Length = 399 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+LD + Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTAD 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I G V ++ FGAF+ G DGLVHI++LS ER VV G+ + VK+L D Sbjct: 193 VGDIVTGTVARLTSFGAFIDLGGV-DGLVHITELSHERNVSPKSVVTVGEEIQVKVLAID 251 Query: 679 DR-GKIKLSMK 688 + G++ LS+K Sbjct: 252 EEAGRVSLSLK 262 >gi|169825145|ref|YP_001692756.1| transcription accessory protein [Finegoldia magna ATCC 29328] gi|167831950|dbj|BAG08866.1| transcription accessory protein [Finegoldia magna ATCC 29328] Length = 697 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I G V V+DFGAF+ DGL HIS++S + +V + Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689 DTV VK++ D +RG + LSMK+ Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697 >gi|83950988|ref|ZP_00959721.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM] gi|83838887|gb|EAP78183.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM] Length = 794 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I SITD+ + +G V V FGAFV +DGLVH+SQL+ V +VVK G Sbjct: 638 EGIDSITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 696 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D V V++ + D R +I LSM+ Sbjct: 697 DVVRVRVTEIDVPRKRIGLSMR 718 >gi|319947109|ref|ZP_08021343.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641] gi|319747157|gb|EFV99416.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641] Length = 399 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|289523537|ref|ZP_06440391.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503229|gb|EFD24393.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 155 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 45/74 (60%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 +VN++ K V ++ +GAFV + G++HIS++S V K DV+ G V K++ Sbjct: 23 AKVNEVVKCVVERITPYGAFVKIQNGQRGMIHISEISQGYVKKVEDVLSLGQEVEAKVIK 82 Query: 677 FDDRGKIKLSMKVV 690 D+RG+I LS+K + Sbjct: 83 IDERGRIDLSLKAL 96 >gi|123232500|emb|CAM19184.1| zinc finger, CCHC domain containing 17 [Mus musculus] gi|123858148|emb|CAM25095.1| zinc finger, CCHC domain containing 17 [Mus musculus] Length = 186 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696 GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 2 GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 56 >gi|153825197|ref|ZP_01977864.1| ribosomal protein S1 [Vibrio cholerae MZO-2] gi|149741176|gb|EDM55227.1| ribosomal protein S1 [Vibrio cholerae MZO-2] Length = 544 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 172 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 226 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 227 DEILVKVLKFDRDRTRVSLGLK 248 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 263 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 321 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 322 DIDEERRRISLGLKQCKAN 340 >gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1] gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1] Length = 803 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 A +E + I+D+ K+ +G V V +FGAFV +DGLVH+SQL+ V VV Sbjct: 658 ALQEGVEEISDLKPGMKL-EGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHKVV 716 Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMK 688 K GD V V +L+ D R +I LSM+ Sbjct: 717 KAGDIVSVTVLEVDQKRKRISLSMR 741 >gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus kowalevskii] Length = 198 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 22/174 (12%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R D + E +R S + LL R GS+ + +GDT IV V G E +Q + Sbjct: 5 RADCGNLE-LRSQSCEQNLLSRPDGSATYCQGDTSVIVAV-YGPAEVKQSKE-------- 54 Query: 373 DFMMHYNFLPCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 FL AT EV ++G P E RL R ++ ++ I+ ++ Sbjct: 55 -------FLDKATLEVIFKPKVGIPGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQV 107 Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 + GS V + +AL+DAG+P+S VA + L DGD IIL S E Sbjct: 108 MHNAGSLLSCCVNSTCMALLDAGLPMSCLVAAVTCSLSCDGD--IILDPTSQQE 159 >gi|160877436|ref|YP_001556752.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS195] gi|160862958|gb|ABX51492.1| RNA binding S1 domain protein [Shewanella baltica OS195] gi|315269638|gb|ADT96491.1| Tex-like protein protein-like protein [Shewanella baltica OS678] Length = 787 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 6/84 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ + +G V V +FGAFV +DGLVHIS L+ + ++ +VK GD V VK+++ Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712 Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696 D +R +I LSM++ +DQ+ + Sbjct: 713 VDVERRRIGLSMRLDEAIDQSKSQ 736 >gi|28867558|ref|NP_790177.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971032|ref|ZP_03399153.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1] gi|301385595|ref|ZP_07234013.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato Max13] gi|302058821|ref|ZP_07250362.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato K40] gi|302132150|ref|ZP_07258140.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850793|gb|AAO53872.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213924268|gb|EEB57842.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1] gi|331014861|gb|EGH94917.1| S1 RNA binding domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 773 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEIDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|15641917|ref|NP_231549.1| 30S ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673739|ref|YP_001217448.1| 30S ribosomal protein S1 [Vibrio cholerae O395] gi|227082045|ref|YP_002810596.1| ribosomal protein S1 [Vibrio cholerae M66-2] gi|229507989|ref|ZP_04397494.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286] gi|229515301|ref|ZP_04404761.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21] gi|229518911|ref|ZP_04408354.1| SSU ribosomal protein S1p [Vibrio cholerae RC9] gi|229521837|ref|ZP_04411254.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80] gi|229523935|ref|ZP_04413340.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426] gi|229529059|ref|ZP_04418449.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)] gi|229607535|ref|YP_002878183.1| 30S ribosomal protein S1 [Vibrio cholerae MJ-1236] gi|254286724|ref|ZP_04961678.1| ribosomal protein S1 [Vibrio cholerae AM-19226] gi|254849003|ref|ZP_05238353.1| ribosomal protein S1 [Vibrio cholerae MO10] gi|255745326|ref|ZP_05419275.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101] gi|9656450|gb|AAF95063.1| ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|146315622|gb|ABQ20161.1| ribosomal protein S1 [Vibrio cholerae O395] gi|150423151|gb|EDN15098.1| ribosomal protein S1 [Vibrio cholerae AM-19226] gi|227009933|gb|ACP06145.1| ribosomal protein S1 [Vibrio cholerae M66-2] gi|227013813|gb|ACP10023.1| ribosomal protein S1 [Vibrio cholerae O395] gi|229332833|gb|EEN98319.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)] gi|229337516|gb|EEO02533.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426] gi|229340762|gb|EEO05767.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80] gi|229343600|gb|EEO08575.1| SSU ribosomal protein S1p [Vibrio cholerae RC9] gi|229348006|gb|EEO12965.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21] gi|229355494|gb|EEO20415.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286] gi|229370190|gb|ACQ60613.1| SSU ribosomal protein S1p [Vibrio cholerae MJ-1236] gi|254844708|gb|EET23122.1| ribosomal protein S1 [Vibrio cholerae MO10] gi|255737156|gb|EET92552.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101] gi|327484459|gb|AEA78866.1| SSU ribosomal protein S1p [Vibrio cholerae LMA3894-4] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|303238373|ref|ZP_07324908.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2] gi|302594077|gb|EFL63790.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2] Length = 718 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%) Query: 613 ITDVPEVNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 +TDV ++ + G V+ V DFGAFV +DGLVHIS+L V +VV G Sbjct: 634 LTDVLDIEDLRPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELCDRYVKSPMEVVAVG 693 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691 D V V++LD + R +I LSMK ++ Sbjct: 694 DIVKVRILDVEVQRKRISLSMKEIN 718 >gi|302379353|ref|ZP_07267840.1| Tex-like protein N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312698|gb|EFK94692.1| Tex-like protein N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] Length = 697 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I G V V+DFGAF+ DGL HIS++S + +V + Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689 DTV VK++ D +RG + LSMK+ Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697 >gi|330890971|gb|EGH23632.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 774 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 652 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 711 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 712 KRVGLSMRMSD 722 >gi|320093717|ref|ZP_08025582.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979338|gb|EFW10828.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str. F0338] Length = 479 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 207 QVRTGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 266 RERVSLSLKATQED 279 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ + VVK + V+VK++D D Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHIELPDQVVKVNEEVFVKVIDID 349 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 350 LDRRRISLSLK 360 >gi|300703935|ref|YP_003745537.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957] gi|299071598|emb|CBJ42922.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957] Length = 780 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 725 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ D+ P Sbjct: 726 NRIGLTMRLSDEPGQAP 742 >gi|258621309|ref|ZP_05716343.1| 30S ribosomal protein S1 [Vibrio mimicus VM573] gi|258625367|ref|ZP_05720264.1| 30S ribosomal protein S1 [Vibrio mimicus VM603] gi|262171091|ref|ZP_06038769.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451] gi|258582358|gb|EEW07210.1| 30S ribosomal protein S1 [Vibrio mimicus VM603] gi|258586697|gb|EEW11412.1| 30S ribosomal protein S1 [Vibrio mimicus VM573] gi|261892167|gb|EEY38153.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|229587823|ref|YP_002869942.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens SBW25] gi|229359689|emb|CAY46537.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens SBW25] Length = 774 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|323339401|ref|ZP_08079684.1| YhgF like protein [Lactobacillus ruminis ATCC 25644] gi|323093166|gb|EFZ35755.1| YhgF like protein [Lactobacillus ruminis ATCC 25644] Length = 727 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 24/160 (15%) Query: 537 KVLSESRLQLGEFTPRV---EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593 ++L+E+ ++ E + + ++ P N G G + + IVE ++ Sbjct: 577 RLLTETGIKNAELSTKAGLEKLSCFDPQAFANKTGAGVQTVEDIVE------------SL 624 Query: 594 KIASSSLAEIEAAREMIRS----ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649 K L + + ++RS + D+ E K+ +G V V+DFGAFV +DGLVH+ Sbjct: 625 KKPGRDLRD-SMQKPLLRSDVLHLEDLKEGMKL-QGTVRNVVDFGAFVDIGVKQDGLVHV 682 Query: 650 SQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSM 687 S+L V SDVV GD VW+ +D + RG+I+L+M Sbjct: 683 SKLKKGFVKNPSDVVSVGDIVDVWIDSVD-EKRGRIQLTM 721 >gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32] gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32] Length = 756 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E R+ + +I D+ E I +G V V FGAFV +DGLVH+S LS V + S Sbjct: 632 ETATLRDDVTTIGDLQE-GMILQGTVTNVAAFGAFVDIGVHQDGLVHVSHLSRRFVREAS 690 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 + VK G+ V VK+L D R +I LS+K Sbjct: 691 EAVKVGEIVKVKVLAVDLQRKRISLSIK 718 >gi|329904248|ref|ZP_08273723.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327548072|gb|EGF32801.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 781 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V V FGAFV +DGLVHIS LS V VVK G V VK+L+ D+ R Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVRVKVLEVDEKR 724 Query: 681 GKIKLSMKVVD 691 +I L+M++ D Sbjct: 725 KRIALTMRLTD 735 >gi|315180636|gb|ADT87550.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405] gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405] Length = 399 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+K G V VK+L+ D Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 >gi|304412251|ref|ZP_07393859.1| Tex-like protein [Shewanella baltica OS183] gi|307306035|ref|ZP_07585780.1| Tex-like protein [Shewanella baltica BA175] gi|304349286|gb|EFM13696.1| Tex-like protein [Shewanella baltica OS183] gi|306910908|gb|EFN41335.1| Tex-like protein [Shewanella baltica BA175] Length = 787 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ + +G V V +FGAFV +DGLVHIS L+ + ++ +VK GD V VK+++ Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733 >gi|283850541|ref|ZP_06367829.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B] gi|283574112|gb|EFC22084.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B] Length = 714 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V FGAFV RDG+VH+SQL+ V+ ++VV VWV++++ D +RG+I Sbjct: 641 GLVTNVTRFGAFVDIGVHRDGMVHVSQLADRFVSDPAEVVSVSREVWVRVVEIDLERGRI 700 Query: 684 KLSMK 688 LS++ Sbjct: 701 GLSLR 705 >gi|261210556|ref|ZP_05924849.1| SSU ribosomal protein S1p [Vibrio sp. RC341] gi|260840341|gb|EEX66912.1| SSU ribosomal protein S1p [Vibrio sp. RC341] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|261366361|ref|ZP_05979244.1| protein YhgF [Subdoligranulum variabile DSM 15176] gi|282571964|gb|EFB77499.1| protein YhgF [Subdoligranulum variabile DSM 15176] Length = 719 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V+DFGAFV +DGLVHISQ+S + +V+K GD V VK+L D + +I Sbjct: 653 GTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKVLSVDVAKKRI 712 Query: 684 KLSMK 688 L+MK Sbjct: 713 ALTMK 717 >gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136] Length = 557 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + KG+V K+ FGAFV DGLVHISQLS + V + DV+ GD V +++ Sbjct: 442 KVGDLVKGRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLNVGDEVEARVIKV 501 Query: 678 DD-RGKIKLSMKVVD 691 D +I LS+K V+ Sbjct: 502 DKVERRIGLSVKAVN 516 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 11/151 (7%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P +I IPP + +G + E KVN D+ + ++ + E E A + Sbjct: 123 FLPGSQIDIIPPRDLNEYVGK-------VYEFKIVKVN-DERKNIVLSRREVIEAERAEQ 174 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 + + V +K+ +G V + DFG FV G DGL+HI+ ++ R+ S++V G Sbjct: 175 RQKFLESVKPGDKV-EGIVKNITDFGVFVDLNGM-DGLLHITDMTWGRLNHPSELVAIGQ 232 Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 + V++L+ + ++ ++ L +K + N + I Sbjct: 233 KLNVQILEVNREKERVSLGLKQMQSNPWESI 263 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670 SI + V + G V K++ +GAFV +GL+H+S+LS T+R+A+ SDV+ G V Sbjct: 262 SIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHVSELSWTKRIARPSDVLTVGQKV 321 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693 ++L + + KI L ++ +D N Sbjct: 322 DAQVLGINKEERKISLGVRQLDTN 345 Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681 KG+V + +GAFV DG++H+S LS T ++ S+V+K+G V +L+ D Sbjct: 361 KGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVLKKGQEVEATILEIDKANQ 420 Query: 682 KIKLSMK 688 +I L +K Sbjct: 421 RISLGIK 427 >gi|121591424|ref|ZP_01678703.1| ribosomal protein S1 [Vibrio cholerae 2740-80] gi|121546719|gb|EAX56895.1| ribosomal protein S1 [Vibrio cholerae 2740-80] Length = 542 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 170 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 224 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 225 DEILVKVLKFDRDRTRVSLGLK 246 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 261 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 319 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 320 DIDEERRRISLGLKQCKAN 338 >gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I] gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I] gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS] Length = 791 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V DVV+ G TV VK+L+ D R Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731 Query: 681 GKIKLSMKVVD 691 ++ L+M++ D Sbjct: 732 KRVALTMRLND 742 >gi|262166045|ref|ZP_06033782.1| SSU ribosomal protein S1p [Vibrio mimicus VM223] gi|262025761|gb|EEY44429.1| SSU ribosomal protein S1p [Vibrio mimicus VM223] Length = 556 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 249 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +E +R + + GS GDT+ + V++ +++ + GT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-----REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 YN LP +T E ++ +R R + RL RA+ V+ A TL I Sbjct: 57 GWITAEYNMLPRST-ETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWID 115 Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + + G+ +AL+DA PI VA +++G+V + Sbjct: 116 CDVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK---- 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ ED +D + TD G Sbjct: 172 ILDLCYQEDSKAKVDMNIIMTDEG 195 >gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B] gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 249 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +E +R + + GS GDT+ + V++ +++ + GT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-----REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 YN LP +T E ++ +R R + RL RA+ V+ A TL I Sbjct: 57 GWITAEYNMLPRST-ETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWID 115 Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + + G+ +AL+DA PI VA +++G+V + Sbjct: 116 CDVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK---- 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ ED +D + TD G Sbjct: 172 ILDLCYQEDSKAKVDMNIIMTDEG 195 >gi|303233848|ref|ZP_07320501.1| Tex-like protein N-terminal domain protein [Finegoldia magna BVS033A4] gi|302495043|gb|EFL54796.1| Tex-like protein N-terminal domain protein [Finegoldia magna BVS033A4] Length = 697 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + SI D+ E I G V V+DFGAF+ DGL HIS++S + +V + Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689 DTV VK++ D +RG + LSMK+ Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697 >gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756] gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756] Length = 573 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V + D+GAF+ G DGL+HI+ + RV S+VV GD V V +L FD +R Sbjct: 203 ILEGVVKNLTDYGAFIDLGGI-DGLLHITDMGWRRVKHPSEVVSAGDEVRVMVLKFDRER 261 Query: 681 GKIKLSMKVVDQNTGKPI 698 G+I L MK + ++ + I Sbjct: 262 GRISLGMKQLGEDPWQDI 279 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 GQ+ + DFG F+ G DGL+H+S LS +R + + K+GD + +L D +R + Sbjct: 378 GQIKSITDFGVFIGLEGGIDGLIHLSDLSWDRPGEEAVRDFKKGDELEAVVLSIDPERER 437 Query: 683 IKLSMK 688 I L +K Sbjct: 438 ISLGIK 443 Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +I+ G+V + D+GAFV +GLVH+S++ T + + + G V V +L Sbjct: 284 PEGTRIF-GKVTNITDYGAFVEIEEGVEGLVHVSEIDWTNKNLNPAKALHLGQEVEVMVL 342 Query: 676 DFD-DRGKIKLSMK 688 D D +R +I L +K Sbjct: 343 DIDEERRRISLGIK 356 >gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3] Length = 256 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 28/249 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQ 370 R GR ++ +RDI G + GS L GDT+ + T+ E+ V L G+ Sbjct: 17 TRPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATV-----ERGVPRFLRGSG 71 Query: 371 RNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y LP AT G + G R + RL R++ L T+ + Sbjct: 72 SGWVTAEYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLD 131 Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473 ++ ++DG + A++ G+ +A++DA G P+ + +A I++G+ KD Sbjct: 132 CDVLQADGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEP-- 189 Query: 474 IILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532 + D+ DED D V T D G +Q + +++ M+ L A++G I Sbjct: 190 --VLDLDYDEDSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIA 247 Query: 533 NEMSKVLSE 541 + L++ Sbjct: 248 ALQTAALAD 256 >gi|261823333|ref|YP_003261439.1| hypothetical protein Pecwa_4104 [Pectobacterium wasabiae WPP163] gi|261607346|gb|ACX89832.1| Tex-like protein protein-like protein [Pectobacterium wasabiae WPP163] Length = 777 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+++ D R Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|153002700|ref|YP_001368381.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS185] gi|151367318|gb|ABS10318.1| RNA binding S1 domain protein [Shewanella baltica OS185] Length = 787 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ + +G V V +FGAFV +DGLVHIS L+ + ++ +VK GD V VK+++ Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733 >gi|306836392|ref|ZP_07469370.1| YhgF like protein [Corynebacterium accolens ATCC 49726] gi|304567752|gb|EFM43339.1| YhgF like protein [Corynebacterium accolens ATCC 49726] Length = 774 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ + +G V V FGAFV +DGLVH+S +S + V+ +VV+ Sbjct: 628 KEGVHKVSDLTP-GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSHQFVSDPHEVVRS 686 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 G V VK+++ D DR +I LS++ +D G+P Sbjct: 687 GQVVKVKVMEVDVDRQRIGLSLR-LDDEPGQP 717 >gi|320007277|gb|ADW02127.1| Tex-like protein [Streptomyces flavogriseus ATCC 33331] Length = 808 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVH+S +S V DVVK GD V VK++D D R Sbjct: 653 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIPR 712 Query: 681 GKIKLSMKVVDQNT 694 ++ L++++ D+ T Sbjct: 713 KRVSLTLRLDDEAT 726 >gi|56962592|ref|YP_174318.1| transcriptional accessory protein [Bacillus clausii KSM-K16] gi|56908830|dbj|BAD63357.1| transcriptional accessory protein [Bacillus clausii KSM-K16] Length = 720 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V ++DFGAFV +DGLVH+S+LS + +VV GD TVWV+ +D + +G Sbjct: 650 QGTVRNIVDFGAFVDIGVKQDGLVHVSKLSDRYIKHPMEVVSIGDVVTVWVEDVD-EKKG 708 Query: 682 KIKLSMK 688 +I L+MK Sbjct: 709 RISLTMK 715 >gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50] gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50] Length = 791 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V DVV+ G TV VK+L+ D R Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731 Query: 681 GKIKLSMKVVD 691 ++ L+M++ D Sbjct: 732 KRVALTMRLND 742 >gi|317151867|ref|YP_004119915.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2] gi|316942118|gb|ADU61169.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2] Length = 732 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I D+ E ++ G V V FGAFV RDGLVH+SQL+ V S+VV G Sbjct: 644 ENVSDIKDLREGMRL-PGIVTNVTKFGAFVDVGVHRDGLVHVSQLADRFVRDPSEVVAAG 702 Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688 V V ++ D RG+I LSMK Sbjct: 703 REVMVTVIGLDQKRGRINLSMK 724 >gi|311895331|dbj|BAJ27739.1| putative transcription accessory protein [Kitasatospora setae KM-6054] Length = 779 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 ++ + I+D+ EV + +G V V FGAFV +DGLVH+S LS V +VVK Sbjct: 638 KDGVEKISDL-EVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSRNFVKDPREVVKP 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 GD V K+ D R +I L++++ D T P Sbjct: 697 GDIVRAKVTAVDVQRKRIGLTLRLDDDTTPGP 728 >gi|260768940|ref|ZP_05877874.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972] gi|260616970|gb|EEX42155.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972] Length = 556 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42] gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42] Length = 382 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G+V +++ FGAFV +GLVHISQ+S + + +V++EG TV VK+LD ++ Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 334 Query: 681 GKIKLSMKVVDQ 692 +I LSM+ +++ Sbjct: 335 ERISLSMRELEE 346 Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664 EM + VPEV + KG V KV D V + G++ IS+LS+ V K SDVV Sbjct: 2 TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSSLHVEKASDVV 61 Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 K D + +K+ +D I LS + VD + Sbjct: 62 KVDDELDLKVTKVEDDALI-LSKRAVDAD 89 >gi|217975273|ref|YP_002360024.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS223] gi|217500408|gb|ACK48601.1| RNA binding S1 domain protein [Shewanella baltica OS223] Length = 787 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 PE+ + +G V V +FGAFV +DGLVHIS L+ + ++ +VK GD V VK+++ Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712 Query: 677 FD-DRGKIKLSMKV---VDQN 693 D +R +I LSM++ +DQ+ Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733 >gi|146296242|ref|YP_001180013.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409818|gb|ABP66822.1| RNA binding S1 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 141 Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V + FGAFV GLVHIS+++ E V +KE TV VK+LD + G Sbjct: 27 VVEGKVKSITKFGAFVELPTGVVGLVHISEIANEYVDDIRKYLKEQQTVKVKVLDIKENG 86 Query: 682 KIKLSMKVVDQ 692 KI LS+K V++ Sbjct: 87 KISLSIKKVNE 97 >gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I] Length = 791 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V DVV+ G TV VK+L+ D R Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731 Query: 681 GKIKLSMKVVD 691 ++ L+M++ D Sbjct: 732 KRVALTMRLND 742 >gi|289646444|ref|ZP_06477787.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 773 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|257481800|ref|ZP_05635841.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320322223|gb|EFW78319.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331861|gb|EFW87799.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330873008|gb|EGH07157.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|331009434|gb|EGH89490.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 773 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14] gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14] Length = 795 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 7/102 (6%) Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E +AAR E + I D+ E + +G V V FGAFV +DGL+HIS LS V Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697 +VVK GD V VK+L+ D R +I L+ ++ D Q T +P Sbjct: 700 PREVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741 >gi|160936405|ref|ZP_02083774.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC BAA-613] gi|158440688|gb|EDP18426.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC BAA-613] Length = 663 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E V K +DV++ G + +++DF+ Sbjct: 567 VGNVVYGRVARMTDFGAFVELEPGVDALLHVSQISREHVEKPADVLRIGQEIEARVVDFN 626 Query: 679 DRG-KIKLSMKVV 690 + KI LS+K + Sbjct: 627 EADHKISLSIKAM 639 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V V DFGAF+ GA DGL+HIS++S RV V K GD V V + D KI Sbjct: 490 GTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKAGDQVRVLIKDIQGE-KIA 547 Query: 685 LSMKVVDQN 693 LS+K + N Sbjct: 548 LSLKFPEAN 556 >gi|167031288|ref|YP_001666519.1| RNA-binding S1 domain-containing protein [Pseudomonas putida GB-1] gi|166857776|gb|ABY96183.1| RNA binding S1 domain protein [Pseudomonas putida GB-1] Length = 774 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] Length = 245 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ AG PI+ +A I++G+ K+ IL Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ +ED +D V T SG Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSG 196 >gi|284044326|ref|YP_003394666.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684] gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684] Length = 529 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + D V +G+V KV+ FGAFV +GLVHIS+L+ V ++++ D V V Sbjct: 292 VVDTYNVGDELEGRVTKVVTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPNDEVKV 351 Query: 673 KLLDFD-DRGKIKLSMKVVD 691 K+L+ D +R ++ LS+K V+ Sbjct: 352 KILEIDSERRRLSLSIKRVE 371 >gi|260773187|ref|ZP_05882103.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14] gi|260612326|gb|EEX37529.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14] Length = 556 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +++ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHRL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVDVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|227891239|ref|ZP_04009044.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227867113|gb|EEJ74534.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 723 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVH+S+LS + V+ DVV G TVWV+ +D +R Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDVDL-NRR 712 Query: 682 KIKLSM 687 +I+L+M Sbjct: 713 RIQLTM 718 >gi|254518912|ref|ZP_05130968.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp. 7_2_43FAA] gi|226912661|gb|EEH97862.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp. 7_2_43FAA] Length = 635 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+VV++ DFGAFV DGLVHIS+++ +R+ DV+K GD V +L D + KI Sbjct: 568 GKVVRISDFGAFVELEPGVDGLVHISKITHDRINNPGDVLKIGDEVKAIILSVDAENKKI 627 Query: 684 KLSMK 688 LS+K Sbjct: 628 ALSIK 632 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + K +V + +FGAF G DGL+H+SQ+S V V+K+G + VK+++ D Sbjct: 477 VGDVVKAEVKRFTNFGAFADINGV-DGLIHLSQISWSHVKSAESVLKKGQIIDVKIIEAD 535 Query: 679 -DRGKIKLSMKVV 690 + ++ LS+K + Sbjct: 536 RENNRLSLSIKAL 548 >gi|71737579|ref|YP_272550.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558132|gb|AAZ37343.1| S1 RNA binding domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 773 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|330986824|gb|EGH84927.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 773 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1P [Intrasporangium calvum DSM 43043] gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043] Length = 493 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S A +E + +R+ T + E+ K + +G V +++FGAFV G DGLVH+S+LS + Sbjct: 188 SRRAWLEQTQSEVRT-TFLKELQKGQVRQGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 245 Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 246 HIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKATQED 284 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV D ++VK++D D Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVNVADEIFVKVIDID 354 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 355 LERRRISLSLK 365 >gi|34765734|gb|AAQ82439.1| unknown [Pseudomonas syringae pv. syringae] Length = 343 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 222 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 281 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 282 KRVGLSMRMSD 292 >gi|50086361|ref|YP_047871.1| hypothetical protein ACIAD3386 [Acinetobacter sp. ADP1] gi|49532337|emb|CAG70049.1| conserved hypothetical protein; putative RNA binding protein, contains S1 domain [Acinetobacter sp. ADP1] Length = 796 Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE I I + E ++ +G V V +FGAFV +DGLVHIS+L+ E V+ VVK Sbjct: 642 REDITEIAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKP 700 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G V V+++ D +R ++ LSM+ Sbjct: 701 GQIVQVRVIQVDAERKRVNLSMR 723 >gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei F0415] gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei F0415] Length = 710 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675 EV + +G V V+DFGAFV DGL+HIS++S V S VV GD TVWV + Sbjct: 633 EVGQKLEGTVRNVVDFGAFVDVGVHEDGLIHISEMSKNFVKHPSQVVSVGDIVTVWVSKV 692 Query: 676 DFDDRGKIKLSM 687 D +R K+ LS+ Sbjct: 693 DL-NREKLNLSL 703 >gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1] gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1] Length = 254 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWSTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209 Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV 185 +++ +SG D V Sbjct: 199 TDMNVVMSGNGDFV 212 >gi|298485218|ref|ZP_07003311.1| transcriptional accessory factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160206|gb|EFI01234.1| transcriptional accessory factor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 773 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|289577757|ref|YP_003476384.1| Tex-like protein [Thermoanaerobacter italicus Ab9] gi|289527470|gb|ADD01822.1| Tex-like protein [Thermoanaerobacter italicus Ab9] Length = 712 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFG FV DGLVHIS++S + DVV GD V VK+L D +R +I Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLSVDLERNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|159477693|ref|XP_001696943.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast [Chlamydomonas reinhardtii] gi|158274855|gb|EDP00635.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast [Chlamydomonas reinhardtii] Length = 1013 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] Length = 372 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 16/230 (6%) Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364 +++ + R+DGR +R+I+ ++GL + GS G+T+ + V G E + Sbjct: 118 SIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKA--- 173 Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423 S R + Y+ + E R+ RL +A V+ T FP + + Sbjct: 174 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVI-LTESFPRSQI 232 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483 I E+ + DGS+ A V +SLAL DAG+P+ + G+V D + D++ E Sbjct: 233 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIV----DAKPIVDLTSRE 288 Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGIS--ENIMVMALQQAKRGRLHI 531 + V+G S I + ++ I + ++++ LQ RLHI Sbjct: 289 ETDLLPRVTVSGFSSIILLLHSKFQLATICGRDEVILVELQ----NRLHI 334 >gi|295109047|emb|CBL23000.1| Transcriptional accessory protein [Ruminococcus obeum A2-162] Length = 719 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHIS++S + + + V GD V V++L D + Sbjct: 647 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSEKYIKHPLEAVSVGDVVDVRVLGVDMKK 706 Query: 681 GKIKLSMKVVDQ 692 +I LSMK + Q Sbjct: 707 KRISLSMKGIKQ 718 >gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] Length = 252 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 25/249 (10%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYVDSLSGTQR 371 R DGR + +R+IS Q GS L GDT+ I L R ++SG Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGW- 64 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP +T + + A ++ G G RL R++ V+ +TL + Sbjct: 65 --LTAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDC 122 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+DAG P +A +++G + +G+ + L Sbjct: 123 DVLQADGGTRTASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVG-IYEGEPVLDL 181 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 I ED +DF V T G +Q + SE+ + + AK+G + L+ M Sbjct: 182 PYI---EDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKG-IKELSSM 237 Query: 536 SKVLSESRL 544 RL Sbjct: 238 QAAFLTQRL 246 >gi|261409036|ref|YP_003245277.1| Tex-like protein [Paenibacillus sp. Y412MC10] gi|261285499|gb|ACX67470.1| Tex-like protein protein-like protein [Paenibacillus sp. Y412MC10] Length = 740 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQLS V DVV GD V V +L+ D +G+ Sbjct: 667 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 726 Query: 683 IKLSMK 688 + L+M+ Sbjct: 727 VGLTMR 732 >gi|188535335|ref|YP_001909132.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99] gi|188030377|emb|CAO98268.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99] Length = 777 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ + V VVK GD V VK+++ D R Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 712 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 713 KRIALTMRLDEQ 724 >gi|333030297|ref|ZP_08458358.1| Tex-like protein [Bacteroides coprosuis DSM 18011] gi|332740894|gb|EGJ71376.1| Tex-like protein [Bacteroides coprosuis DSM 18011] Length = 713 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 IR+I D+ E I G V + +FGAFV +GL+H+S+++ E V+ + V Sbjct: 628 IRTIEDLKE-GMILPGIVGNITNFGAFVDLGIKENGLIHLSEMANEFVSDPTQYVSIHQQ 686 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693 ++VK+L D +R +I+LS+K ++QN Sbjct: 687 IYVKVLSVDLERKRIQLSLKNIEQN 711 >gi|291517976|emb|CBK73197.1| Transcriptional accessory protein [Butyrivibrio fibrisolvens 16/4] Length = 719 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG V V+DFGAF+ +DGLVHISQ++ + +VV GD V V+++ D+ +G+ Sbjct: 647 KGTVRNVIDFGAFIDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVDVEVISVDEKKGR 706 Query: 683 IKLSMKV 689 I L+MK+ Sbjct: 707 IALTMKL 713 >gi|256750897|ref|ZP_05491781.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750232|gb|EEU63252.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 712 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFG FV DGLVHIS++S + DVV GD V VK+L D +R +I Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLSVDIERNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|53794015|gb|AAU93598.1| chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas reinhardtii] Length = 1013 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|330952080|gb|EGH52340.1| RNA binding S1 [Pseudomonas syringae Cit 7] Length = 772 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|300933903|ref|ZP_07149159.1| putative transcriptional accessory protein [Corynebacterium resistens DSM 45100] Length = 762 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + I+D+ +V + +G V V FGAFV +DGLVH+S +S V DVV G Sbjct: 639 EGVEKISDL-KVGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHNFVKDPHDVVHSG 697 Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696 V VK+++ D+ R ++ LS+++ D+ G+ Sbjct: 698 QVVKVKVMEVDEARQRVGLSLRLDDEPGGR 727 >gi|281353342|gb|EFB28926.1| hypothetical protein PANDA_013257 [Ailuropoda melanoleuca] Length = 200 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696 GLVH + +S+ RV K S++V GD VWVKL+ +DR K+ LSMKVV+Q TGK Sbjct: 1 GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 55 >gi|239906693|ref|YP_002953434.1| transcription accessory protein [Desulfovibrio magneticus RS-1] gi|239796559|dbj|BAH75548.1| transcription accessory protein [Desulfovibrio magneticus RS-1] Length = 713 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G+V V FGAFV RDGLVH+S L+ V + VV G V V +L D +RG++ Sbjct: 641 GRVTNVTAFGAFVDVGVHRDGLVHVSHLADAYVVDPAKVVAAGQEVMVTVLAIDKERGRL 700 Query: 684 KLSMKVVDQNT 694 LSMK Q T Sbjct: 701 SLSMKSEPQAT 711 >gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201] gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201] Length = 493 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 207 QVRTGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 266 RERVSLSLKATQED 279 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV + ++VK++D D Sbjct: 290 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDMAEQVVSVNEELFVKVIDID 349 Query: 679 -DRGKIKLSMK 688 DR +I LS+K Sbjct: 350 LDRRRISLSLK 360 >gi|289627976|ref|ZP_06460930.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866569|gb|EGH01278.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 773 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|228474894|ref|ZP_04059623.1| protein YhgF [Staphylococcus hominis SK119] gi|228271126|gb|EEK12506.1| protein YhgF [Staphylococcus hominis SK119] Length = 715 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I SI D+ + K+ G V V+DFGAFV +DGLVHIS+LS + V D++ GD Sbjct: 633 ILSIEDLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDI 691 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693 V V +L+ D+ K K+S+ +++ N Sbjct: 692 VDVWILNI-DKNKEKVSLTMINPN 714 >gi|153819867|ref|ZP_01972534.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457] gi|126509597|gb|EAZ72191.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457] Length = 406 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 34 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 88 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 89 DEILVKVLKFDRDRTRVSLGLK 110 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 125 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 183 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 184 DIDEERRRISLGLKQCKAN 202 >gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684] gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684] Length = 582 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +E RE RS T E +I +G V + D+GAF+ G DGL+HI+ +S RV+ S Sbjct: 196 LETERESQRSDTLKTLEEGQIVEGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRVSHPS 254 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D++ GD++ VK+L FD ++ ++ L +K Sbjct: 255 DILAVGDSINVKVLKFDREKERVSLGLK 282 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679 I +GQV + DFG FV DGLVHIS LS T+R+ S++ K+GD V +L+ D D Sbjct: 388 IIEGQVKNITDFGIFVGVDEGIDGLVHISDLSWTKRIKHPSELYKKGDLVKAVVLNIDRD 447 Query: 680 RGKIKLSMKVVDQN 693 + L +K + Q+ Sbjct: 448 NERFSLGVKQLTQD 461 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V V +FG F+ +GL+H+S++S ++V D K GD + +L D + Sbjct: 475 IIRGKVTSVTEFGIFLEVEEGVEGLIHVSEISKDKVDSPKDFAKVGDELEAVVLHVDTNE 534 Query: 681 GKIKLSMK 688 KI LS+K Sbjct: 535 HKIALSIK 542 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+VV + D+GAF+ +GL+H+S++S T+R+ + ++ GD V +L D + + Sbjct: 304 GKVVSLTDYGAFIELEEGVEGLIHVSEMSWTKRIKHPNKLLSIGDEVETVVLAMDTENRR 363 Query: 683 IKLSMKVVDQN 693 I L +K V+ N Sbjct: 364 ISLGLKQVEPN 374 >gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54] gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54] Length = 236 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 25/200 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R + R +E++R IS + G+ S L G+T I V++ +E + G+ + Sbjct: 3 MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSV----EESVPPFMRGSGK 58 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429 Y LPCAT R R R + RL R++ ++ TLR+ ++ Sbjct: 59 GWITAEYGMLPCATDSRYRRETNGRSGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDV 118 Query: 430 TESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD---DFII 475 +DG + A++ G +LAL DA +P PV I++G+ KDG D Sbjct: 119 LNADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIMPVVAISVGM-KDGQALLDLDY 177 Query: 476 LSDISGDEDHLGHMDFKVAG 495 + D S D D +F +AG Sbjct: 178 VEDSSADAD----ANFVMAG 193 >gi|309972958|gb|ADO96159.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 903] gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 903] Length = 718 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%) Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668 DV ++ ++ GQ V V+DFGAFV DGL+HIS +S + + S VV GD Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692 Query: 669 -TVWVKLLDFDDRGKIKLSM 687 TVWVK +D +R K+ LS+ Sbjct: 693 VTVWVKRIDV-EREKVNLSL 711 >gi|330972161|gb|EGH72227.1| RNA binding S1 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 772 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|329928970|ref|ZP_08282780.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5] gi|328937222|gb|EGG33649.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5] Length = 731 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQLS V DVV GD V V +L+ D +G+ Sbjct: 660 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 719 Query: 683 IKLSMK 688 + L+M+ Sbjct: 720 VGLTMR 725 >gi|315649164|ref|ZP_07902254.1| Tex-like protein protein-like protein [Paenibacillus vortex V453] gi|315275383|gb|EFU38741.1| Tex-like protein protein-like protein [Paenibacillus vortex V453] Length = 737 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV DGLVHISQLS V DVV GD V V +L+ D +G+ Sbjct: 667 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 726 Query: 683 IKLSMK 688 + L+M+ Sbjct: 727 VGLTMR 732 >gi|300214892|gb|ADJ79308.1| Transcription accessory protein [Lactobacillus salivarius CECT 5713] Length = 345 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVH+S+LS + V+ D+V G TVWV+ +D +R Sbjct: 276 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDIVAVGQIVTVWVEDVDL-NRK 334 Query: 682 KIKLSM 687 +I+L+M Sbjct: 335 RIQLTM 340 >gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 238 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR ++ +R I ++ GS L G+T+ I ++ E L GT Sbjct: 1 MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASI----TEGVPPFLKGTGT 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G S R RL RA+ V+ + T+ I Sbjct: 57 GWITAEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G +AL A PI VA +++G++ DD I+ Sbjct: 117 DVIQADGGTRTASISGGFVALYSAFEKLVKSGELEKNPIKNFVAAVSVGVLN--DDVIL- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ +ED +D V TDSG Sbjct: 174 -DLNYEEDSTARVDMNVVATDSG 195 >gi|289674467|ref|ZP_06495357.1| RNA binding S1 [Pseudomonas syringae pv. syringae FF5] Length = 772 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|145634451|ref|ZP_01790161.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA] gi|145641111|ref|ZP_01796692.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021] gi|145268431|gb|EDK08425.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA] gi|145274272|gb|EDK14137.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.4-21] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|145630844|ref|ZP_01786621.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021] gi|144983504|gb|EDJ90972.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021] Length = 412 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 65/108 (60%), Gaps = 3/108 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ I Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAI 270 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|330806957|ref|YP_004351419.1| S1 RNA-binding domain protiein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375065|gb|AEA66415.1| Conserved hypothetical protein; putative S1 RNA-binding domain protiein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 774 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 781 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS + V +VVK G V VK+++ D R Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKVMEVDVKR 724 Query: 681 GKIKLSMKVVDQ 692 +I LSM++ D+ Sbjct: 725 NRIGLSMRLDDE 736 >gi|172056093|ref|YP_001812553.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171988614|gb|ACB59536.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15] Length = 176 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV + GLVHIS+++ V +DV+ G + VK+L Sbjct: 4 EVGSKVQGKVTGITNFGAFVELPTGKTGLVHISEVADSYVKDINDVLTVGQEITVKVLSV 63 Query: 678 DDRGKIKLSM-KVVDQNTGK 696 ++ GKI LS+ K VD+ G+ Sbjct: 64 ENDGKIGLSIKKAVDRPEGE 83 >gi|282889926|ref|ZP_06298461.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500119|gb|EFB42403.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 751 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%) Query: 601 AEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 A E+A RE + ++ D+ E ++ +G V V FGAFV +DGL+HIS+LS + + Sbjct: 625 ASFESAKFREDVLTLQDLKEKMQL-EGIVTNVTAFGAFVDIGVHQDGLIHISELSDQFIK 683 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S+VVK GD + V +L D +R +I LS + Sbjct: 684 DPSEVVKTGDKIKVTVLSVDIERKRISLSAR 714 >gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42] gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42] Length = 245 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ +GV P++ +A I++G+ K+ +L Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535 D++ +ED +D + T SG +Q + S + L A++G ++ + Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233 Query: 536 SKVLSESRLQL 546 +VL E+ +L Sbjct: 234 KEVLGETLPEL 244 >gi|282889765|ref|ZP_06298304.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500339|gb|EFB42619.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 572 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI V + KG V K+ FGAFV +GL+H+++LS + K DVV +GD V Sbjct: 450 SIEKTMPVGTLVKGVVSKITAFGAFVELESGIEGLIHVTELSDKAFGKVEDVVAKGDEVI 509 Query: 672 VKLLDFD-DRGKIKLSMK--VVDQN 693 K++ D + KI LS+K ++DQN Sbjct: 510 AKVIKLDPEYKKIALSIKEYLIDQN 534 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG++V ++ +GAF+ +GL+H+S++S + V SDVVK+GD V +L D G Sbjct: 288 KGKIVNLLPYGAFIEIEPGIEGLIHVSEMSWVKNVTDPSDVVKKGDEVEAIVLSVQKDEG 347 Query: 682 KIKLSMKVVDQN 693 KI L +K + N Sbjct: 348 KISLGIKQTEHN 359 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 4/111 (3%) Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643 K+NI+ V ++ L E E + + + E I +G V + DFG F+ G Sbjct: 165 KINIERKNVV-VSRRELLEAERVSKKAEVLERIQE-GDIREGTVKNITDFGVFLDLDGI- 221 Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 DGL+HI+ ++ +R+ S++V+ GD + VK+L D ++G++ L +K + N Sbjct: 222 DGLLHITDMTWKRIKHPSEMVQLGDKLKVKILSIDKEKGRVALGLKQKEPN 272 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 K ++ + ++GAFV +GL+HIS LS ++V+ S+V+++GD V +L D D Sbjct: 375 KAEIKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAVILSVDKDSK 434 Query: 682 KIKLSMKVVDQNTGKPI 698 KI L +K + N + I Sbjct: 435 KITLGVKQLSDNPWESI 451 >gi|253699853|ref|YP_003021042.1| RNA binding S1 domain protein [Geobacter sp. M21] gi|251774703|gb|ACT17284.1| RNA binding S1 domain protein [Geobacter sp. M21] Length = 756 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + +I D+ E I +G V V FGAFV +DGLVH+SQL+ +D VK Sbjct: 637 REDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKV 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G V VK+L D +R +I LS+K Sbjct: 696 GQIVKVKVLSADPERKRISLSIK 718 >gi|330445635|ref|ZP_08309287.1| ribosomal protein S1 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489826|dbj|GAA03784.1| ribosomal protein S1 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 556 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ S+ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PESTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|66043527|ref|YP_233368.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a] gi|63254234|gb|AAY35330.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a] Length = 772 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|329123269|ref|ZP_08251837.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116] gi|327471478|gb|EGF16926.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|319760512|ref|YP_004124450.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF] gi|318039226|gb|ADV33776.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF] Length = 575 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 7/76 (9%) Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 +NK+++G V+K + D+GAF+ G DGL+HI+ +S +RV SDV+ GD++ VK Sbjct: 186 LNKLHEGVVLKGLVKNLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSDVINIGDSITVK 244 Query: 674 LLDFD-DRGKIKLSMK 688 +L FD +R ++ L +K Sbjct: 245 VLKFDKERIRVSLGLK 260 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK--------GQVVKVMDFGAF 636 +NI D TVK+ I + + + + D P + I+ G+V + D+G F Sbjct: 235 INIGDSITVKVLKFDKERIRVSLGL-KQLQDDPWASVIHNYKEGDKLVGKVTNLTDYGCF 293 Query: 637 VHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 + G +GLVHIS++ T + + S VV GD + V +LD D DR +I L +K Sbjct: 294 IEIKGGVEGLVHISEMDWTNKNIQPSKVVAIGDLIEVIVLDIDKDRRRISLGLK 347 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 G++ V DFG F+ G DGLVH+S +S + V + S + K+GD + +L D +R + Sbjct: 369 GKIKSVTDFGIFIGLEGGIDGLVHLSDISWDMVNEESINKYKKGDEIEAVVLQVDIERER 428 Query: 683 IKLSMK 688 I LS+K Sbjct: 429 ISLSIK 434 >gi|313149392|ref|ZP_07811585.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313138159|gb|EFR55519.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 69 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%) Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMK 688 M +GAFV F +DGL+HIS++ +R+ + +KEGD + VKL+D D + GK KLS K Sbjct: 1 MPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRK 60 Query: 689 VV 690 V+ Sbjct: 61 VL 62 >gi|302188957|ref|ZP_07265630.1| RNA binding S1 [Pseudomonas syringae pv. syringae 642] Length = 772 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRKRVGLSMRMSD 721 >gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736] gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736] Length = 497 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine microorganism HF4000_APKG2H5] Length = 238 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 14/198 (7%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 RMDGR +R IS +VG++ GS+ +R T ++ G E + +S R Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSAC-VRWGTNHVIAAVYGPM--EAHPRKISRQDRA 72 Query: 373 DFMMHYNFLPCATGEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 + YN P +T + R G R REI ++ A+ V+ +P + +R+ EI Sbjct: 73 VLDVRYNMAPFSTTDRIRPGFNRRSREI--SKVTSDALESVV-LLEMYPRSKIRVEIEIL 129 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 ++ + + +S+AL AG+P++ V +A G + + +++ D++ +ED+ G D Sbjct: 130 CAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKI----NGVVICDLNKEEDNYGEAD 185 Query: 491 FKVAG-TDSG-ITAMQMD 506 + +SG + +QMD Sbjct: 186 LPMGMLPNSGDLVFLQMD 203 >gi|159477691|ref|XP_001696942.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas reinhardtii] gi|158274854|gb|EDP00634.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas reinhardtii] Length = 603 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|145633320|ref|ZP_01789051.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655] gi|144986166|gb|EDJ92756.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKTN 352 >gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1] gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1] Length = 773 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ + + +G V V +FGAFV +DGLVHIS +S + V V + Sbjct: 640 QEGVEDIKDL-QPGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMSNQFVKDPHQVTRA 698 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+++ D +R +I LSM++ DQ Sbjct: 699 GAVVQVKVMEIDLNRRRIALSMRLEDQ 725 >gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus parasanguinis F0405] gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus parasanguinis F0405] Length = 718 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%) Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668 DV ++ ++ GQ V V+DFGAFV DGL+HIS +S + + S VV GD Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692 Query: 669 -TVWVKLLDFDDRGKIKLSM 687 TVWVK +D +R K+ LS+ Sbjct: 693 VTVWVKKIDV-EREKVNLSL 711 >gi|229845053|ref|ZP_04465189.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1] gi|229846877|ref|ZP_04466984.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1] gi|229810366|gb|EEP46085.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1] gi|229812025|gb|EEP47718.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|148827070|ref|YP_001291823.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG] gi|148718312|gb|ABQ99439.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|145629272|ref|ZP_01785071.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21] gi|145636918|ref|ZP_01792583.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH] gi|260581139|ref|ZP_05848959.1| ribosomal protein S1 [Haemophilus influenzae RdAW] gi|260582648|ref|ZP_05850437.1| ribosomal protein S1 [Haemophilus influenzae NT127] gi|319776105|ref|YP_004138593.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047] gi|319896914|ref|YP_004135109.1| 30S ribosomal protein s1 [Haemophilus influenzae F3031] gi|144978775|gb|EDJ88498.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21] gi|145269999|gb|EDK09937.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH] gi|260092167|gb|EEW76110.1| ribosomal protein S1 [Haemophilus influenzae RdAW] gi|260094320|gb|EEW78219.1| ribosomal protein S1 [Haemophilus influenzae NT127] gi|301169961|emb|CBW29565.1| 30S ribosomal subunit protein S1 [Haemophilus influenzae 10810] gi|317432418|emb|CBY80773.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031] gi|317450696|emb|CBY86916.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|1881289|dbj|BAA19316.1| ydcJ [Bacillus subtilis] Length = 123 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680 +G V V+DFGAFV +DGLVHIS+LS + V DVV GD TVWV +D + Sbjct: 56 LQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QK 114 Query: 681 GKIKLSM 687 G++ LSM Sbjct: 115 GRVSLSM 121 >gi|16273139|ref|NP_439376.1| 30S ribosomal protein S1 [Haemophilus influenzae Rd KW20] gi|2500383|sp|Q48082|RS1_HAEIN RecName: Full=30S ribosomal protein S1 gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd KW20] Length = 549 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5] gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5] Length = 732 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 645 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 703 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694 GD TVWVK +D +R K+ LS+ D++ Sbjct: 704 GDLVTVWVKKID-TEREKVNLSLLAPDESN 732 >gi|315644380|ref|ZP_07897520.1| RNA binding S1 domain protein [Paenibacillus vortex V453] gi|315280257|gb|EFU43549.1| RNA binding S1 domain protein [Paenibacillus vortex V453] Length = 163 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V +D +K D V VK+++ Sbjct: 4 EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 DKDGKIGLSIK 74 >gi|302385050|ref|YP_003820872.1| Tex-like protein protein-like protein [Clostridium saccharolyticum WM1] gi|302195678|gb|ADL03249.1| Tex-like protein protein-like protein [Clostridium saccharolyticum WM1] Length = 713 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%) Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 TDV E+ + G V+K V+DFGAFV +DGLVHISQ+S + + + V GD Sbjct: 632 TDVMEMKDLQPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEAVSVGD 691 Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689 V VK++ D + +I L+MK+ Sbjct: 692 IVEVKVISVDVQKKRIALTMKL 713 >gi|261403925|ref|YP_003240166.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10] gi|329925485|ref|ZP_08280359.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5] gi|261280388|gb|ACX62359.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10] gi|328939768|gb|EGG36108.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5] Length = 162 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V +D +K D V VK+++ Sbjct: 4 EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 DKDGKIGLSIK 74 >gi|187935343|ref|YP_001884415.1| hypothetical protein CLL_A0161 [Clostridium botulinum B str. Eklund 17B] gi|188588644|ref|YP_001919608.1| hypothetical protein CLH_0154 [Clostridium botulinum E3 str. Alaska E43] gi|251779823|ref|ZP_04822743.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187723496|gb|ACD24717.1| putative RNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|188498925|gb|ACD52061.1| putative RNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|243084138|gb|EES50028.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 138 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I +G VV + +FGAF+ G + GLVHIS+++ V + +KE D V VK++ Sbjct: 4 EAGNILEGIVVNITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLKEQDKVKVKVISI 62 Query: 678 DDRGKIKLSMK 688 DD GKI LS+K Sbjct: 63 DDNGKISLSIK 73 >gi|53804824|ref|YP_113508.1| S1 RNA-binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758585|gb|AAU92876.1| S1 RNA binding domain protein [Methylococcus capsulatus str. Bath] Length = 735 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V +FGAFV +DGLVHIS L+ V +VVK GD V VK+L+ D R + Sbjct: 622 EGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKVLEVDIPRRR 681 Query: 683 IKLSMK 688 I LSM+ Sbjct: 682 IALSMR 687 >gi|15923498|ref|NP_371032.1| hypothetical protein SAV0508 [Staphylococcus aureus subsp. aureus Mu50] gi|15926185|ref|NP_373718.1| hypothetical protein SA0466 [Staphylococcus aureus subsp. aureus N315] gi|21282192|ref|NP_645280.1| hypothetical protein MW0463 [Staphylococcus aureus subsp. aureus MW2] gi|49485372|ref|YP_042593.1| hypothetical protein SAS0465 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651384|ref|YP_185440.1| hypothetical protein SACOL0552 [Staphylococcus aureus subsp. aureus COL] gi|87160186|ref|YP_493195.1| hypothetical protein SAUSA300_0486 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194268|ref|YP_499060.1| hypothetical protein SAOUHSC_00483 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266967|ref|YP_001245910.1| hypothetical protein SaurJH9_0530 [Staphylococcus aureus subsp. aureus JH9] gi|150393013|ref|YP_001315688.1| hypothetical protein SaurJH1_0543 [Staphylococcus aureus subsp. aureus JH1] gi|151220682|ref|YP_001331504.1| hypothetical protein NWMN_0470 [Staphylococcus aureus subsp. aureus str. Newman] gi|156978836|ref|YP_001441095.1| hypothetical protein SAHV_0505 [Staphylococcus aureus subsp. aureus Mu3] gi|161508748|ref|YP_001574407.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142300|ref|ZP_03566793.1| hypothetical protein SauraJ_11807 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315223|ref|ZP_04838436.1| hypothetical protein SauraC_03490 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730976|ref|ZP_04865141.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735243|ref|ZP_04869408.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005301|ref|ZP_05143902.2| hypothetical protein SauraM_02500 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424620|ref|ZP_05601048.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427286|ref|ZP_05603687.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429923|ref|ZP_05606309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432625|ref|ZP_05608987.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257435529|ref|ZP_05611579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257794251|ref|ZP_05643230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|258407232|ref|ZP_05680377.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|258420801|ref|ZP_05683737.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9719] gi|258424456|ref|ZP_05687335.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258429625|ref|ZP_05688299.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9299] gi|258446105|ref|ZP_05694266.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A6300] gi|258448013|ref|ZP_05696143.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A6224] gi|258452811|ref|ZP_05700806.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|258453841|ref|ZP_05701814.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|262049993|ref|ZP_06022852.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30] gi|262052535|ref|ZP_06024732.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3] gi|269202128|ref|YP_003281397.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus ED98] gi|282895116|ref|ZP_06303336.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A8117] gi|282903094|ref|ZP_06310986.1| general stress protein 13 [Staphylococcus aureus subsp. aureus C160] gi|282904883|ref|ZP_06312743.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282907830|ref|ZP_06315668.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910146|ref|ZP_06317952.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913336|ref|ZP_06321127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus M899] gi|282915826|ref|ZP_06323594.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus D139] gi|282918289|ref|ZP_06326029.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus C427] gi|282923040|ref|ZP_06330726.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus C101] gi|282925583|ref|ZP_06333236.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A9765] gi|283768943|ref|ZP_06341852.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|283957298|ref|ZP_06374756.1| general stress protein 13 [Staphylococcus aureus subsp. aureus A017934/97] gi|284023517|ref|ZP_06377915.1| hypothetical protein Saura13_02949 [Staphylococcus aureus subsp. aureus 132] gi|293500385|ref|ZP_06666237.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509324|ref|ZP_06668040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293515912|ref|ZP_06670602.1| general stress protein 13 [Staphylococcus aureus subsp. aureus M1015] gi|294850368|ref|ZP_06791101.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A9754] gi|295407398|ref|ZP_06817195.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819] gi|296276161|ref|ZP_06858668.1| hypothetical protein SauraMR_07419 [Staphylococcus aureus subsp. aureus MR1] gi|297207389|ref|ZP_06923828.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246478|ref|ZP_06930318.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796] gi|297591581|ref|ZP_06950218.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8] gi|300910348|ref|ZP_07127801.1| general stress protein 13 [Staphylococcus aureus subsp. aureus TCH70] gi|304380526|ref|ZP_07363202.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700398|dbj|BAB41696.1| SA0466 [Staphylococcus aureus subsp. aureus N315] gi|14246276|dbj|BAB56670.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21203628|dbj|BAB94328.1| MW0463 [Staphylococcus aureus subsp. aureus MW2] gi|49243815|emb|CAG42240.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285570|gb|AAW37664.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL] gi|87126160|gb|ABD20674.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201826|gb|ABD29636.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740036|gb|ABQ48334.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149945465|gb|ABR51401.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373482|dbj|BAF66742.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|156720971|dbj|BAF77388.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367557|gb|ABX28528.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725288|gb|EES94017.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726803|gb|EES95532.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|257272647|gb|EEV04767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275937|gb|EEV07405.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279439|gb|EEV10034.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282490|gb|EEV12623.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257285166|gb|EEV15283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257788223|gb|EEV26563.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|257841190|gb|EEV65639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|257843193|gb|EEV67606.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9719] gi|257845325|gb|EEV69360.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257849684|gb|EEV73651.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A9299] gi|257855082|gb|EEV78024.1| RNA binding S1 domain-containing protein [Staphylococcus aureus A6300] gi|257858703|gb|EEV81576.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A6224] gi|257859497|gb|EEV82350.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|257864012|gb|EEV86767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|259159582|gb|EEW44629.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3] gi|259161928|gb|EEW46511.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30] gi|262074418|gb|ACY10391.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus ED98] gi|269940079|emb|CBI48455.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282314559|gb|EFB44946.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus C101] gi|282317855|gb|EFB48224.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus C427] gi|282320317|gb|EFB50659.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus D139] gi|282322807|gb|EFB53127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus M899] gi|282325994|gb|EFB56300.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328306|gb|EFB58581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332000|gb|EFB61509.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282592487|gb|EFB97499.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A9765] gi|282596520|gb|EFC01480.1| general stress protein 13 [Staphylococcus aureus subsp. aureus C160] gi|282762534|gb|EFC02674.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A8117] gi|283461124|gb|EFC08210.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|283469800|emb|CAQ49011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ST398] gi|283791222|gb|EFC30032.1| general stress protein 13 [Staphylococcus aureus subsp. aureus A017934/97] gi|285816207|gb|ADC36694.1| RNA binding protein, contains ribosomal protein S1 domain [Staphylococcus aureus 04-02981] gi|290921320|gb|EFD98378.1| general stress protein 13 [Staphylococcus aureus subsp. aureus M1015] gi|291096345|gb|EFE26605.1| S1 RNA binding domain-containing protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467869|gb|EFF10379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294822792|gb|EFG39228.1| S1 RNA binding domain-containing protein [Staphylococcus aureus A9754] gi|294967755|gb|EFG43787.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819] gi|296887952|gb|EFH26846.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176665|gb|EFH35927.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796] gi|297575450|gb|EFH94167.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8] gi|298693838|gb|ADI97060.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ED133] gi|300888337|gb|EFK83524.1| general stress protein 13 [Staphylococcus aureus subsp. aureus TCH70] gi|302332221|gb|ADL22414.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JKD6159] gi|302750399|gb|ADL64576.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340930|gb|EFM06854.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436402|gb|ADQ75473.1| general stress protein 13 [Staphylococcus aureus subsp. aureus TCH60] gi|312829003|emb|CBX33845.1| general stress protein 13 (GSP13) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128636|gb|EFT84639.1| hypothetical protein CGSSa03_01645 [Staphylococcus aureus subsp. aureus CGS03] gi|315193870|gb|EFU24264.1| hypothetical protein CGSSa00_12592 [Staphylococcus aureus subsp. aureus CGS00] gi|315196191|gb|EFU26547.1| hypothetical protein CGSSa01_12543 [Staphylococcus aureus subsp. aureus CGS01] gi|320144182|gb|EFW35950.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438740|gb|EGA96480.1| hypothetical protein SAO11_2433 [Staphylococcus aureus O11] gi|323442048|gb|EGA99683.1| hypothetical protein SAO46_2007 [Staphylococcus aureus O46] gi|329313227|gb|AEB87640.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329725063|gb|EGG61558.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329729775|gb|EGG66172.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329731089|gb|EGG67461.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 133 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V + + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63 Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697 D GKI LS+K Q+T KP Sbjct: 64 ADDGKISLSIKKAKDRPRRQHTSKP 88 >gi|330943283|gb|EGH45672.1| RNA binding S1 [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 118 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 177 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 178 KRVGLSMRMSD 188 >gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185] gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185] Length = 499 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 5/99 (5%) Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655 S A +E + +R+ T + E+ K + G V +++FGAFV G DGLVH+S+LS + Sbjct: 184 SRRAWLEQTQSEVRT-TFLKELQKGQVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 241 Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 242 HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 280 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV G ++VK++D D Sbjct: 291 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVTVGSDIFVKVIDID 350 Query: 679 -DRGKIKLSMKVVDQN 693 +R +I LS+K +++ Sbjct: 351 LERRRISLSLKQANED 366 >gi|332141546|ref|YP_004427284.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep ecotype'] gi|327551568|gb|AEA98286.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep ecotype'] Length = 504 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + ++ E ++I Sbjct: 127 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERETLLANLEEGHEI 181 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 182 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 239 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 240 RVSLGMK 246 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE KI GQV + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 261 PEGTKI-NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 319 Query: 676 DFD-DRGKIKLSMK 688 + D +R +I L +K Sbjct: 320 EIDEERRRISLGLK 333 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V K+GD + +L D +R Sbjct: 355 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 412 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 413 ERISLGVKQIEED 425 >gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 501 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 31/167 (18%) Query: 530 HILNEMSKVLSESRLQLGEFTPRV-----EIMAIPPDQIRNVIGMGGKVIRGIVEQTGA- 583 ++ E+ + L+E + ++GE E++A +++ +G+GG E+ GA Sbjct: 31 EVVAEVKEELAEVKEEIGEALAEAREKASEVLA----EVKERVGLGGD--DEATEEAGAT 84 Query: 584 -KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642 + + D+DGT LA++ A E+ G+V +G FV Sbjct: 85 FEPSGDEDGTT---PRRLADLHAGMEL--------------DGKVTSTALYGVFVDIGVG 127 Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 RDGLVHIS++S +R+ +DVV+ GD V V++ D D +I L+M+ Sbjct: 128 RDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRISLTMR 174 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V + FGAFV RDGLVHIS+LS RV K DVVK GD V V++L+ D D Sbjct: 298 VLDGKVSGIAPFGAFVDLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDS 357 Query: 681 GKIKLSMKVVDQNT 694 +I L+M+V + T Sbjct: 358 KRISLTMRVEEAPT 371 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 11/83 (13%) Query: 617 PEVNK----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 PEVN + G V + FG FV +DGLVHIS+LS RV K D V Sbjct: 188 PEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTV 247 Query: 667 GDTVWVKLLDFDDRG-KIKLSMK 688 G + ++L+ D +I LS++ Sbjct: 248 GQSYTFRVLEVDTGAQRISLSLR 270 >gi|21633221|gb|AAM22483.1| ribosomal protein S1-like protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 124 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G+V + +FGAFV GLVH+S+++ + V K SDV+K G V VK+L+ D + Sbjct: 7 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSK 66 Query: 681 GKIKLSMKVVD 691 +I LS+K VD Sbjct: 67 RRISLSIKQVD 77 >gi|330965662|gb|EGH65922.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 773 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|300313473|ref|YP_003777565.1| transcription accessory protein [Herbaspirillum seropedicae SmR1] gi|300076258|gb|ADJ65657.1| transcription accessory protein [Herbaspirillum seropedicae SmR1] Length = 783 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I D+ + I +G V V FGAFV +DGLVHIS LS V VVK Sbjct: 651 KEGVEEIKDL-RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKA 709 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691 G V VK+L+ D+ R +I L+M++ D Sbjct: 710 GQVVKVKVLEVDEKRKRIALTMRLND 735 >gi|184154694|ref|YP_001843034.1| RNA binding protein [Lactobacillus fermentum IFO 3956] gi|227514334|ref|ZP_03944383.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931] gi|260663743|ref|ZP_05864631.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN] gi|183226038|dbj|BAG26554.1| RNA binding protein [Lactobacillus fermentum IFO 3956] gi|227087306|gb|EEI22618.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931] gi|260551794|gb|EEX24910.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN] Length = 168 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 39/64 (60%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V + +FGAF+ + GLVHISQ+S + + DV+ GD V VK++ + GKI Sbjct: 11 GTVSGITNFGAFIDLADNKTGLVHISQVSDKFIKDIHDVLTVGDKVMVKVMKIEGNGKIA 70 Query: 685 LSMK 688 LSMK Sbjct: 71 LSMK 74 >gi|144897525|emb|CAM74389.1| Transcriptional accessory protein [Magnetospirillum gryphiswaldense MSR-1] Length = 779 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVH+S L+ V +VVK GD V VK+L+ D R Sbjct: 659 ILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVKVLEVDLKR 718 Query: 681 GKIKLSMKVVD 691 +I L+M+ D Sbjct: 719 KRIALTMRKND 729 >gi|332993175|gb|AEF03230.1| 30S ribosomal protein S1 [Alteromonas sp. SN2] Length = 556 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + ++ E ++I Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERESLLANLEEGHEI 195 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 253 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 254 RVSLGMK 260 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE KI GQV + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 275 PEGTKI-SGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 333 Query: 676 DFD-DRGKIKLSMK 688 + D +R +I L +K Sbjct: 334 EIDEERRRISLGLK 347 Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V K+GD + +L D +R Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 426 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 427 ERISLGVKQIEED 439 >gi|329117363|ref|ZP_08246080.1| Tex-like protein N-terminal domain protein [Streptococcus parauberis NCFD 2020] gi|326907768|gb|EGE54682.1| Tex-like protein N-terminal domain protein [Streptococcus parauberis NCFD 2020] Length = 710 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS++S V S VV GD TVWV +D DR Sbjct: 639 EGTVRNVVDFGAFVDVGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 698 KVNLSL 703 >gi|94501660|ref|ZP_01308176.1| S1 RNA binding domain protein [Oceanobacter sp. RED65] gi|94426236|gb|EAT11228.1| S1 RNA binding domain protein [Oceanobacter sp. RED65] Length = 776 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE + E I+ + D + I +G V V FGAFV +DGLVHIS +S + + Sbjct: 635 AEFKEGVEEIKDLKD----DMILEGVVSNVAAFGAFVDVGVHQDGLVHISMMSDQFIDDP 690 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 VVK GD V VK+++ D R +I LSM++ D Sbjct: 691 RQVVKAGDVVKVKVMEVDVPRKRIALSMRMSD 722 >gi|330957181|gb|EGH57441.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 134 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 R + D+ ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V Sbjct: 2 RDLKDL-QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVV 60 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 VK+++ D R ++ LSM++ D Sbjct: 61 KVKVMEVDIPRKRVGLSMRMSD 82 >gi|196250872|ref|ZP_03149557.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] gi|196209601|gb|EDY04375.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] Length = 121 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 I KG+V + +GAFV G GL+HIS++S V D V GD V VK+LD D + Sbjct: 9 IVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDYKA 68 Query: 681 GKIKLSMKVVD 691 G+ LS+K ++ Sbjct: 69 GRASLSLKALE 79 >gi|168180380|ref|ZP_02615044.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum NCTC 2916] gi|226949048|ref|YP_002804139.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182668877|gb|EDT80855.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum NCTC 2916] gi|226843882|gb|ACO86548.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum A2 str. Kyoto] Length = 638 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + + +G+V + DFGAF+ G DGL+H+S++S RV K D +K GD + V +LD Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + K+ LS+K + ++ K + Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612] gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612] Length = 240 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 27/204 (13%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +E +R +S + G+ L G+T+ I + +++ L G ++ Sbjct: 3 RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMV----EDKVPPFLRGEKKG 58 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRIV 426 Y LP +TG SR G R G RL R++ V+ T+ I Sbjct: 59 WVTAEYEMLPSSTG--SRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWID 116 Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL DA PI+ VA ++G+ ++ Sbjct: 117 CDVIQADGGTRTASITGAFVALYDAVTWLMEEEIIDEWPINGYVAATSVGINQNEP---- 172 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ +ED +D + TD G Sbjct: 173 IMDLCYEEDSTAEVDMNIVMTDEG 196 >gi|291458642|ref|ZP_06598032.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419175|gb|EFE92894.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 723 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V + DFGAF+ +DGLVHIS+L+ V S++++ G V++L D+ R Sbjct: 652 ILEGVVRNITDFGAFLDIGVHQDGLVHISELAERYVKHPSELLRLGQVKRVRILSVDEKR 711 Query: 681 GKIKLSMKVV 690 G+I LSMK + Sbjct: 712 GRISLSMKKI 721 >gi|316932054|ref|YP_004107036.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris DX-1] gi|315599768|gb|ADU42303.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris DX-1] Length = 778 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 20/152 (13%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606 +I+A I+ +IG KV++G+ Q A D+ + S L E+E Sbjct: 579 KILAATKSDIKALIGQT-KVLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633 Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E + ITD+ + I + + V FGAF +DGL+HIS +S R+ Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 +VVK G V VK+L+ D R +I L++++ D Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724 >gi|187780230|ref|ZP_02996703.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC 15579] gi|187773855|gb|EDU37657.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC 15579] Length = 387 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 49/86 (56%), Gaps = 10/86 (11%) Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 N + KGQ V ++ FGAFV G DGLVH SQLS RV S+VV GD V V + Sbjct: 193 NSLEKGQKIDGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251 Query: 675 LDFD-DRGKIKLSMKVVDQ---NTGK 696 LDFD D KI LS+K V NT K Sbjct: 252 LDFDKDTKKIALSLKDVKNDPWNTAK 277 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G V+K+++FGAF+ +GLVHIS+++ E +AK S+ + GD V VK+L+ + Sbjct: 282 VGSVVEGTVIKLLNFGAFIEVEKGIEGLVHISEITDENIAKPSENLNIGDRVKVKVLELN 341 Query: 679 -DRGKIKLSMK 688 D ++ LS+K Sbjct: 342 SDEKRMSLSIK 352 >gi|159477689|ref|XP_001696941.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii] gi|158274853|gb|EDP00633.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii] Length = 560 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|53794017|gb|AAU93599.1| plastid-specific ribosomal protein-7 precursor [Chlamydomonas reinhardtii] Length = 560 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|330874560|gb|EGH08709.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 773 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ D R Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710 Query: 681 GKIKLSMKVVD 691 ++ LSM++ D Sbjct: 711 KRVGLSMRMSD 721 >gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1] gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1] gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2] gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4] gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1] gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3] gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1] gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1] gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1] gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2] gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1] gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2] gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3] gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2] gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2] gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1] Length = 254 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209 Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV 185 +++ +SG D V Sbjct: 199 TDMNVVMSGNGDFV 212 >gi|270293991|ref|ZP_06200193.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275458|gb|EFA21318.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 711 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 +R+I+D+ E ++ G V + +FGAFV +GLVH+SQL+ ++ ++VV Sbjct: 628 VRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 686 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693 + VK+L D DR +I+L+MK V+QN Sbjct: 687 IRVKVLSIDMDRKRIQLTMKGVEQN 711 >gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C] gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C] Length = 504 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 296 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 355 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 356 DLERRRISLSLKQANESFG 374 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 272 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 273 RERVSLSLKATQED 286 >gi|227503365|ref|ZP_03933414.1| transcription accessory protein [Corynebacterium accolens ATCC 49725] gi|227075868|gb|EEI13831.1| transcription accessory protein [Corynebacterium accolens ATCC 49725] Length = 774 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ + +G V V FGAFV +DGLVH+S +S + V+ +VV+ Sbjct: 628 KEGVHKVSDLTP-GMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHQFVSDPHEVVRS 686 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 G V VK+++ D DR +I LS++ +D G+P Sbjct: 687 GQVVKVKVMEVDVDRQRIGLSLR-LDDEPGQP 717 >gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1p [Melissococcus plutonius ATCC 35311] gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311] Length = 408 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G++ ++ DFGAF+ G DGLVH+S+++ V K SD + G+ V VK+L + D Sbjct: 208 IVEGKIARLTDFGAFIDLGGI-DGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDE 266 Query: 681 GKIKLSMK 688 G+I LS+K Sbjct: 267 GRISLSIK 274 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD + VK+L+ Sbjct: 290 VGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVH 349 Query: 679 -DRGKIKLSMKVVD 691 + ++ LS+K ++ Sbjct: 350 PEDHRLALSIKALE 363 >gi|53794019|gb|AAU93600.1| chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas reinhardtii] Length = 603 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 + DV E ++ Y+G V V +FGAFV+F +GLVHIS+L++ DVV+ G V V Sbjct: 58 LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116 Query: 673 KLLDFD-DRGKIKLSMK 688 K+L D ++ ++ L +K Sbjct: 117 KVLSVDAEKKRVSLELK 133 >gi|306821676|ref|ZP_07455273.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550258|gb|EFM38252.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 149 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672 ++DV EV I G V+ + +G FV + GLVHISQ+S E + + +++ GD + V Sbjct: 1 MSDVLEVGSIISGTVINIKPYGIFVSIGKNQKGLVHISQVSDEYIRDINQILRSGDKINV 60 Query: 673 KLLDFDDRGKIKLSMK 688 K+L ++ GK+ LS+K Sbjct: 61 KVLS-NEEGKVSLSIK 75 >gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group] Length = 382 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 234 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 292 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 293 RERGRVSLSTKKLEPTPG 310 >gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe] Length = 242 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 13/233 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R+ + G+ +GS+ G+T+ + +V E + S + R Sbjct: 12 LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVD---GPSEPVIKSKARADR 68 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 + N +T +V + RR I LA + + QT +P + + + + Sbjct: 69 TFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 + DG+ + + ++LAL+DAG+P+ V G+V+ ++L S +E L + Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD---MLLDLNSLEESALSWLT 184 Query: 491 FKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSES 542 V G + MQ++ + E++M MA+ G HI N M + +S Sbjct: 185 VAVLGNIKKVVYMQLETSMHLDYLESVMNMAIA----GSEHIYNTMQSAVRQS 233 >gi|322806046|emb|CBZ03613.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium botulinum H04402 065] Length = 638 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + + +G+V + DFGAF+ G DGL+H+S++S RV K D +K GD + V +LD Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + K+ LS+K + ++ K + Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2] Length = 254 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWPTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209 Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV 185 +++ +SG D V Sbjct: 199 TDMNVVMSGNGDFV 212 >gi|312880067|ref|ZP_07739867.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260] gi|310783358|gb|EFQ23756.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260] Length = 502 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684 +VV++ DFGAFV +GL+HISQLS +RV K DV++EG V ++L+ + +I+ Sbjct: 387 KVVRLADFGAFVELEEGVEGLIHISQLSRQRVDKPQDVLQEGQEVEARILEVNPAERRIR 446 Query: 685 LSMK 688 LS++ Sbjct: 447 LSLR 450 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V + FG FV+ GA +GLVHIS+LS +R AK D+V +GD V VK++ D + Sbjct: 213 VLEGDVSSITSFGVFVNL-GALEGLVHISELSWQRNAKARDLVNKGDHVKVKVIGIDRET 271 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 272 NRISLSIK 279 Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 27/47 (57%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 +G V + DFGAFV +GLVHI LS R+ +V+K+G + Sbjct: 300 EGTVTNLTDFGAFVEIEPGVEGLVHIGDLSWSRIKHPREVLKKGQKI 346 >gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] Length = 282 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 27/205 (13%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ +R + ++ GS L GDT+ I ++ D++ + Sbjct: 25 LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASV----DDKVPPFKKNSGE 80 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRI 425 Y+ LP +TG ++S++ R +EI RL RA+ V+ A + I Sbjct: 81 GWVTAEYSMLPRSTGVRNQRDISKLKLNGRSQEI--QRLIGRALRSVVNFHALGERAIII 138 Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474 ++ ++DG + A++ G+ +A++DA +PI+ VA +++G++ D + Sbjct: 139 DCDVIQADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEE--- 195 Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499 + D+ ED +D V T SG Sbjct: 196 -MLDLCYGEDSNAVVDMNVVMTSSG 219 >gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 15912] gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC 15912] Length = 718 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%) Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668 DV ++ ++ GQ V V+DFGAFV DGL+HIS +S + + S VV GD Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692 Query: 669 -TVWVKLLDFDDRGKIKLSM 687 TVWVK +D +R K+ LS+ Sbjct: 693 VTVWVKKIDV-EREKVNLSL 711 >gi|288922364|ref|ZP_06416555.1| RNA binding S1 domain protein [Frankia sp. EUN1f] gi|288346271|gb|EFC80609.1| RNA binding S1 domain protein [Frankia sp. EUN1f] Length = 768 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S +S V+ DV K GD V VK+LD D R Sbjct: 665 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSKNFVSDPRDVAKPGDIVRVKVLDVDIPR 724 Query: 681 GKIKLSMKVVD 691 +I L++++ D Sbjct: 725 KRISLTLRLDD 735 >gi|68250248|ref|YP_249360.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP] gi|68058447|gb|AAX88700.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP] Length = 549 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|329116949|ref|ZP_08245666.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020] gi|326907354|gb|EGE54268.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020] Length = 407 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLAGIDGLVHISQISHNRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+E + + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKEARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262 >gi|160889663|ref|ZP_02070666.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492] gi|156860655|gb|EDO54086.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492] Length = 704 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 +R+I+D+ E ++ G V + +FGAFV +GLVH+SQL+ ++ ++VV Sbjct: 621 VRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 679 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693 + VK+L D DR +I+L+MK V+QN Sbjct: 680 IRVKVLSIDMDRKRIQLTMKGVEQN 704 >gi|330895742|gb|EGH28031.1| RNA binding S1 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 741 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 616 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 675 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 676 DIPRKRVGLSMRMSD 690 >gi|153941510|ref|YP_001391062.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein [Clostridium botulinum F str. Langeland] gi|152937406|gb|ABS42904.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog [Clostridium botulinum F str. Langeland] gi|295319111|gb|ADF99488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein [Clostridium botulinum F str. 230613] Length = 638 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + + +G+V + DFGAF+ G DGL+H+S++S RV K D +K GD + V +LD Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535 Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698 D + K+ LS+K + ++ K + Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105] gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105] Length = 243 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 27/206 (13%) Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370 + R DGR+ +R+IS + + GS + GDT + ++ +++ L G Sbjct: 5 QARPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSV----EDKVPGFLKGKN 60 Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLR 424 + Y LP +T SRM + R GR L RA+ + TL+ Sbjct: 61 QGWLTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLK 118 Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDF 473 I ++ ++DG + A++ G+ +A+ DA G PI + VA +++G+V + Sbjct: 119 IDCDVIQADGGTRTASITGAMVAVADAIGKLIANGALPENPIKQFVAAVSVGVV----NG 174 Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499 ++ D++ DED D V T+ G Sbjct: 175 QVVLDLNYDEDSTCETDLNVVMTEKG 200 >gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555] gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016] gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555] gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 248 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R + + GS L GDT+ I ++ +++ L G Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASI----EDKVPPFLKGRGE 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 YN +P AT +++R G R + R+ RA+ V+ A T+ + Sbjct: 57 GWITCEYNMIPRATQVRKARDINR-GRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVD 115 Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL+DA PI V+ +++G+V D Sbjct: 116 CDVIQADGGTRTASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDTR---- 171 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 + D+ ED +D V TDSG Sbjct: 172 MLDLCYLEDSRAKVDMNVVMTDSG 195 >gi|332308524|ref|YP_004436375.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175853|gb|AEE25107.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 776 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + S++D+ E I +G V V +FGAFV +DGLVHIS ++ + ++ ++VK Sbjct: 637 KEGVSSLSDLKE-GMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKFISDPREIVKT 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D R ++ +M++ D Sbjct: 696 GDIVKVKVMEVDVARKRVSFTMRLND 721 >gi|311694257|gb|ADP97130.1| ribosomal S1 synthesis/modification protein [marine bacterium HP15] Length = 564 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%) Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AE A RE ++ ++T+ E+ KG V + D+GAFV G DGL+HI+ ++ +R+ Sbjct: 176 AENSAEREALLETLTEGMEI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S++V GD + VK+L FD +R ++ L +K Sbjct: 231 PSEIVNVGDEISVKVLKFDRERNRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ K +V + D+G F +GLVH+S++ T + S VV+ GD V V +L Sbjct: 275 PEGSKV-KARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVDVMIL 333 Query: 676 DFD-DRGKIKLSMK 688 D D +R +I L +K Sbjct: 334 DIDEERRRISLGIK 347 Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 G++ + DFG F+ G DGLVH+S +S + + K+GD V +L D +R + Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVILSVDPERER 428 Query: 683 IKLSMK 688 I L +K Sbjct: 429 ISLGIK 434 >gi|260584655|ref|ZP_05852401.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633] gi|260157678|gb|EEW92748.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633] Length = 731 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G + V+DFGAFV +DGLVHIS++ V SDVV GD TVWV +D +G Sbjct: 659 QGTIRNVVDFGAFVDIGVKQDGLVHISRMKKGFVKHPSDVVAVGDIVTVWVTEIDM-KKG 717 Query: 682 KIKLSM 687 ++ LSM Sbjct: 718 RVSLSM 723 >gi|212703198|ref|ZP_03311326.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098] gi|212673464|gb|EEB33947.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098] Length = 487 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 V+ DD G +I SL+ +A + D + +G+VV++ FGAFV + Sbjct: 258 VSKDDKGRTRI---SLSRKKAEGDPWLQAADRLAAGTVVEGKVVRIAPFGAFVELLPGVE 314 Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 GLVH+S++S T+RV K DVV GD + VK+ + + + +I LS++ Sbjct: 315 GLVHLSEMSWTKRVNKAEDVVNVGDVISVKIKEINVESRRISLSLR 360 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677 V +G++ ++ FGAF+ +G++H+S+LS RV + V GD V KLL Sbjct: 200 VGDTVEGRITRLASFGAFMELAPGVEGMIHLSELSWSRVNSADEAVAVGDVVRAKLLSVS 259 Query: 678 -DDRGKIKLSM 687 DD+G+ ++S+ Sbjct: 260 KDDKGRTRISL 270 >gi|138893885|ref|YP_001124338.1| S1 RNA-binding domain-containing protein [Geobacillus thermodenitrificans NG80-2] gi|134265398|gb|ABO65593.1| S1 RNA binding domain protein [Geobacillus thermodenitrificans NG80-2] Length = 721 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V D+V GD VWV+ +D +G Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDV-AKG 710 Query: 682 KIKLSM 687 +I LSM Sbjct: 711 RISLSM 716 >gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ + +R + ++ GS L GDT+ + T+ +++ G + Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATV----EDKVPPFAKGEGK 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP +T + A R+ G RL RA+ V+ A TL I Sbjct: 57 GWITAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A + GS +A L++ G +P+ VA +++G+V DG++ + Sbjct: 117 DVIQADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIV-DGEEIL-- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDS 498 D++ +ED +D V T S Sbjct: 174 -DLNFEEDSKALVDMNVVMTGS 194 >gi|85060299|ref|YP_456001.1| hypothetical protein SG2321 [Sodalis glossinidius str. 'morsitans'] gi|84780819|dbj|BAE75596.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 779 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + VVK GD V VK+++ D R Sbjct: 653 VLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFIDDPHKVVKAGDIVKVKVMEVDIAR 712 Query: 681 GKIKLSMKVVDQNTGK 696 +I LSM+ +D+ G+ Sbjct: 713 KRIALSMR-LDERPGE 727 >gi|145639201|ref|ZP_01794808.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII] gi|145271763|gb|EDK11673.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII] gi|309750777|gb|ADO80761.1| 30S ribosomal protein S1 [Haemophilus influenzae R2866] Length = 549 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + + ++ E +++ KG V + ++GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV S++V GD V VK+L FD DR ++ L +K + Q+ Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637 VN+ D+ TVK+ SL + ++ +I + VN G+V + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 +GLVH+S++ T + S VV GDTV V +L+ D +R +I L +K N Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352 >gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 250 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 23/204 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R +GR + +R IS + + + GS L G+T+ + ++ D + L G+ + Sbjct: 6 LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASV----DNKVPPFLRGSGQ 61 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT S G S R + RL R++ + T+ + Sbjct: 62 GWVTAEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDC 121 Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LAL A P PVA +++G V D IL Sbjct: 122 DVLQADGGTRTASITGAFLALAGAVRSLIAGGRIAASPFRMPVAAVSIGKV----DGQIL 177 Query: 477 SDISGDEDHLGHMDFKVAGTDSGI 500 +D+ ED +DF V G +G+ Sbjct: 178 TDLDYSEDSRAEVDFNVVGNGNGV 201 >gi|239994307|ref|ZP_04714831.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126] Length = 556 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E++ E + ++ E ++I Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERETLLANLEEGHEI 195 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD ++ Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 253 Query: 682 KIKLSMK 688 ++ L MK Sbjct: 254 RVSLGMK 260 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE KI GQV + D+G FV +GLVH+S++ T + S VV GDTV V +L Sbjct: 275 PEGTKI-NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 333 Query: 676 DFD-DRGKIKLSMK 688 + D +R +I L +K Sbjct: 334 EIDEERRRISLGLK 347 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG F+ G DGLVH+S +S + + D V K+GD + +L D +R Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 426 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 427 ERISLGVKQIEED 439 >gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486] gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486] Length = 500 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis] gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis] Length = 247 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 9/200 (4%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R + +VG+L + GS+ G+T+A+ V G E + +L R Sbjct: 12 LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATV-YGPHEVQNKAKALH--DR 68 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431 + + +TGE + R+ + RR + + I ++ + Sbjct: 69 VLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQ 128 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HM 489 +DG + +A + +LAL++AG+P+ V+ + V D L DI+ E+ G + Sbjct: 129 ADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTP----LMDINYLEESTGGPQL 184 Query: 490 DFKVAGTDSGITAMQMDMKI 509 + I QMD ++ Sbjct: 185 TLAILPKSDKIVLFQMDSRL 204 Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 19/199 (9%) Query: 26 QSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVG---KIPGGYL 78 Q+DG+ G T LATV +++ D L V + T++ G K P Sbjct: 34 QADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFSTGERKKKP---- 89 Query: 79 RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138 R + + TE +++ R + +I L + +++ + + V+Q D HV + A + AL Sbjct: 90 RGDRKATELSMMVRRTFEAAI--LINLYPRSQIDIYVQVLQAD--GGNHVACINAVTLAL 145 Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLMVELEANQL 195 + +G+P + V V ++N +++ L+E G L L + D +++ ++++ +L Sbjct: 146 INAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAILPKSDKIVLFQMDS-RL 204 Query: 196 SEDVVLDAIIFGHNECKPV 214 D + + CK + Sbjct: 205 HMDNMDKVLALAMKGCKDI 223 >gi|153006639|ref|YP_001380964.1| RNA-binding S1 domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030212|gb|ABS27980.1| RNA binding S1 domain protein [Anaeromyxobacter sp. Fw109-5] Length = 527 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 ++ G V V D+GAFV G +GLVH+S+LS +RV+K D++ GD V V++L D+ Sbjct: 322 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELSWDRVSKPQDLLTAGDAVQVQVLRIDEDP 380 Query: 682 K----IKLSMKVV 690 K I LS+K + Sbjct: 381 KKGERIGLSVKTL 393 >gi|47207907|emb|CAF89868.1| unnamed protein product [Tetraodon nigroviridis] Length = 1310 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 48/91 (52%), Gaps = 17/91 (18%) Query: 622 IYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677 IY G+V +M FG FV G R +GLVH+S+L E RVA +DVV +G V VK+L Sbjct: 234 IYSGKVCSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVADVADVVTKGQKVQVKVLSV 293 Query: 678 DDRGKIKLSMKV------------VDQNTGK 696 K LSMK VDQ TG+ Sbjct: 294 TG-TKASLSMKASHLGCFHEEESDVDQVTGE 323 >gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6] Length = 830 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E I I+D+ + + +G V V FGAFV +DGLVH+S L+ V+ +VVK G Sbjct: 652 EGIEKISDL-KPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSG 710 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692 V VK+L+ D +R +I L++++ D+ Sbjct: 711 QVVRVKVLEADPERKRISLTLRLDDE 736 >gi|207743011|ref|YP_002259403.1| rna-binding protein [Ralstonia solanacearum IPO1609] gi|206594408|emb|CAQ61335.1| putative rna-binding protein [Ralstonia solanacearum IPO1609] Length = 180 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 66 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 125 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ D+ P Sbjct: 126 NRIGLTMRLTDEPGQAP 142 >gi|207724157|ref|YP_002254555.1| rna-binding protein [Ralstonia solanacearum MolK2] gi|206589367|emb|CAQ36329.1| rna-binding protein [Ralstonia solanacearum MolK2] Length = 222 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 108 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 167 Query: 681 GKIKLSMKVVDQNTGKP 697 +I L+M++ D+ P Sbjct: 168 NRIGLTMRLTDEPGQAP 184 >gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1] gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1] Length = 787 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 E +AA+ E + I D+ + +G V V FGAFV +DGLVHIS LS V Sbjct: 638 EFKAAKFAEGVEDIKDL-RPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSERYVKD 696 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 DVVK GD V VK+L+ D R +I L+ ++ D+ Sbjct: 697 PRDVVKAGDIVKVKVLEVDVARKRIALTCRMSDE 730 >gi|237797943|ref|ZP_04586404.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020794|gb|EGI00851.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 773 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 707 DIPRRRVGLSMRMSD 721 >gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl] Length = 399 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G V V DFG FV GA DGLVH+S++S RV +V+K GD V V +L+ D +R Sbjct: 231 VRDGVVSSVCDFGVFVDIGGA-DGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHER 289 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 290 KRIALSIK 297 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I +G + ++ FGAF +GL+HIS++ ER+ +V+ EG V +++ Sbjct: 312 QLGQIVEGTITQLASFGAFARIEDGVEGLIHISEMGDERIQHPREVLSEGQVVQARIIRI 371 Query: 678 DD-RGKIKLSMKV 689 D R ++ LS+++ Sbjct: 372 DPARKRMGLSLRL 384 >gi|254448853|ref|ZP_05062309.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015] gi|198261543|gb|EDY85832.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015] Length = 774 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS +S E V DVVK G+ V VK++ D R Sbjct: 649 ILEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHEFVKDPRDVVKAGEVVKVKVMAVDVAR 708 Query: 681 GKIKLSMKVVD 691 +I LSM++ D Sbjct: 709 KRIGLSMRLDD 719 >gi|187779599|ref|ZP_02996072.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC 15579] gi|187773224|gb|EDU37026.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC 15579] Length = 638 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 10/101 (9%) Query: 607 REMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 RE++++I D E + I +G+V + +FGAFV G DGL+H+S++S RV Sbjct: 458 REILKTIRDEHIEETWASLEKDTIVEGEVKRFTNFGAFVEINGV-DGLLHVSEISWGRVE 516 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 + D +K GD + V +LD D + K+ LS+K + ++ K + Sbjct: 517 RPEDALKVGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+VV+ FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + K I Sbjct: 569 GKVVRFASFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSAEKRI 628 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 629 ALSIKDVEE 637 >gi|50123042|ref|YP_052209.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613568|emb|CAG77019.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043] Length = 777 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS L+ V VVK GD V VK+++ D R Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|300864265|ref|ZP_07109145.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337730|emb|CBN54291.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 746 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 8/98 (8%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I+ I+D+ V +G V V +FGAFV +DGLVHISQL+ V +VK Sbjct: 634 KEGIKEISDL-NVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKLIVKV 692 Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQN------TGKP 697 G V V++L+ +++ K I LSMK+ +Q T KP Sbjct: 693 GQVVKVRVLEVNEKLKRISLSMKLQEQQNSDRKATSKP 730 >gi|227510734|ref|ZP_03940783.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189855|gb|EEI69922.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 722 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS++S V S +V GD TVW+ +D DR Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDV-DRH 711 Query: 682 KIKLSM 687 +I+LSM Sbjct: 712 RIQLSM 717 >gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2] Length = 495 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGA 635 I +Q AK+ D + S A +E + +R + ++ G V +++FGA Sbjct: 168 IGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGA 227 Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 FV G DGLVH+S+LS + + +VV GD V V++LD D DR ++ LS+K ++ Sbjct: 228 FVDLGGV-DGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 285 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV +T++VK++D D Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDID 355 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 356 LERRRISLSLK 366 >gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22] gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22] Length = 498 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|209521839|ref|ZP_03270516.1| RNA binding S1 domain protein [Burkholderia sp. H160] gi|209497722|gb|EDZ97900.1| RNA binding S1 domain protein [Burkholderia sp. H160] Length = 784 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 4/88 (4%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 RE + ++D +P + + +G V V FGAF+ +DGLVH+S +ST+ V +VVK Sbjct: 644 REGVEKVSDLIPGM--VLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVK 701 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 702 AGQIVKVKVLEVDVKRQRIALTMRLDDE 729 >gi|187929004|ref|YP_001899491.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12J] gi|187725894|gb|ACD27059.1| RNA binding S1 domain protein [Ralstonia pickettii 12J] Length = 777 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 662 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 721 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 722 NRIGLTMRLSDE 733 >gi|70733781|ref|YP_257421.1| S1 RNA-binding domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68348080|gb|AAY95686.1| S1 RNA binding domain protein [Pseudomonas fluorescens Pf-5] Length = 873 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 746 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 805 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 806 DIPRKRVGLSMRMGD 820 >gi|295676889|ref|YP_003605413.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002] gi|295436732|gb|ADG15902.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002] Length = 783 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 4/88 (4%) Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665 RE + ++D +P + + +G V V FGAF+ +DGLVH+S +ST+ V +VVK Sbjct: 644 REGVEKVSDLIPGM--VLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVK 701 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 702 AGQIVKVKVLEVDVKRQRIALTMRLDDE 729 >gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group] Length = 402 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 254 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 312 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 313 RERGRVSLSTKKLEPTPG 330 >gi|300112899|ref|YP_003759474.1| 30S ribosomal protein S1 [Nitrosococcus watsonii C-113] gi|299538836|gb|ADJ27153.1| ribosomal protein S1 [Nitrosococcus watsonii C-113] Length = 561 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE A RE + ++ + E K KG V + D+GAFV G DGL+HI+ +S +R+ Sbjct: 176 AEYSAEREAL--LSSLGE-GKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699 S+VV GD + V++L FD +R ++ L +K + ++ K + Sbjct: 232 SEVVNIGDDITVQVLKFDKERQRVSLGLKQMGEDPWKDLA 271 Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680 G++ + DFG FV G DGLVH+S +S A +++ K+GD V +L D +R Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 426 Query: 681 GKIKLSMKVVDQN 693 +I L +K ++ + Sbjct: 427 ERISLGVKQLEDD 439 >gi|239931899|ref|ZP_04688852.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672] Length = 497 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|227512321|ref|ZP_03942370.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227522407|ref|ZP_03952456.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227084496|gb|EEI19808.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227090465|gb|EEI25777.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 169 Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V + +FGAF+ R GLVHIS++S V DV+K GD V VK+L Sbjct: 4 EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63 Query: 678 DDRGKIKLSMK 688 + KI LS++ Sbjct: 64 EGNNKISLSIR 74 >gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064] Length = 496 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 294 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 353 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 354 DLERRRISLSLKQANESFG 372 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 212 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 270 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 271 RERVSLSLKATQED 284 >gi|138896517|ref|YP_001126970.1| general stress protein 13 [Geobacillus thermodenitrificans NG80-2] gi|134268030|gb|ABO68225.1| Polyribonucleotide nucleotidyltransferase, general stress protein 13 [Geobacillus thermodenitrificans NG80-2] Length = 124 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 I KG+V + +GAFV G GL+HIS++S V D V GD V VK+LD D + Sbjct: 12 IVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDYKA 71 Query: 681 GKIKLSMKVVD 691 G+ LS+K ++ Sbjct: 72 GRASLSLKALE 82 >gi|330977298|gb|EGH77252.1| RNA binding S1 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 638 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ I +G V V +FGAFV +DGLVHIS LS + + + VK GD V VK+++ Sbjct: 513 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 572 Query: 678 D-DRGKIKLSMKVVD 691 D R ++ LSM++ D Sbjct: 573 DIPRKRVGLSMRMSD 587 >gi|269126870|ref|YP_003300240.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311828|gb|ACY98202.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183] Length = 795 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS +S V+ +VVK GD V V++LD D R Sbjct: 665 VLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKNYVSDPREVVKPGDIVKVRVLDVDIPR 724 Query: 681 GKIKLSMKVVD 691 +I L++++ D Sbjct: 725 KRISLTLRLDD 735 >gi|228476209|ref|ZP_04060912.1| RNA binding S1 domain protein [Staphylococcus hominis SK119] gi|314937285|ref|ZP_07844627.1| general stress protein 13 [Staphylococcus hominis subsp. hominis C80] gi|228269694|gb|EEK11193.1| RNA binding S1 domain protein [Staphylococcus hominis SK119] gi|313654581|gb|EFS18331.1| general stress protein 13 [Staphylococcus hominis subsp. hominis C80] Length = 133 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 42/80 (52%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ V D + GD V VK+L Sbjct: 4 EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 + GKI LS+K +P Sbjct: 64 AEDGKISLSIKKAKDRPRRP 83 >gi|254514352|ref|ZP_05126413.1| general secretion pathway protein J [gamma proteobacterium NOR5-3] gi|219676595|gb|EED32960.1| general secretion pathway protein J [gamma proteobacterium NOR5-3] Length = 786 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I ITD+ +++ + +G V V FGAFV +DGLVHIS +S + + + K GD Sbjct: 642 IEKITDL-KLDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMSDKFIKDPREAAKAGDI 700 Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691 V VK++ D R ++ LSM++ D Sbjct: 701 VKVKVMAIDVPRKRVGLSMRLTD 723 >gi|186476164|ref|YP_001857634.1| RNA-binding S1 domain-containing protein [Burkholderia phymatum STM815] gi|184192623|gb|ACC70588.1| RNA binding S1 domain protein [Burkholderia phymatum STM815] Length = 780 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + I+D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKISDL-SPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 G V VK+L+ D R +I L+M++ D Sbjct: 703 GQIVKVKVLEVDVKRQRISLTMRMDD 728 >gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779] gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779] Length = 709 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKKFIKHPSQVVSV 680 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694 GD TVWVK +D R K+ LS+ D++ Sbjct: 681 GDLVTVWVKKIDV-QREKVNLSLLAPDESN 709 >gi|299538552|ref|ZP_07051835.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis ZC1] gi|298726139|gb|EFI66731.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis ZC1] Length = 378 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 3/102 (2%) Query: 589 DDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D G ++ S A +EA + +++ + + + G+V ++ FGAF+ G DGLV Sbjct: 155 DKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVLDGKVQRLASFGAFIDLGGI-DGLV 213 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 HISQ+S E V+ S+V+ EG V VK+L D + +I LS+K Sbjct: 214 HISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLSIK 255 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G+V ++ FGAFV +GLVHISQ++ + + + +KEG V VK+LD + D Sbjct: 274 ILDGRVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNADE 333 Query: 681 GKIKLSMKVVDQN 693 G++ LS+K + +N Sbjct: 334 GRLALSIKELLEN 346 >gi|154684582|ref|YP_001419743.1| hypothetical protein RBAM_000720 [Bacillus amyloliquefaciens FZB42] gi|308171954|ref|YP_003918659.1| polyribonucleotide nucleotidyltransferase or phosphorylase [Bacillus amyloliquefaciens DSM 7] gi|311070710|ref|YP_003975633.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942] gi|154350433|gb|ABS72512.1| YabR [Bacillus amyloliquefaciens FZB42] gi|307604818|emb|CBI41189.1| putative RNA degradation protein; polyribonucleotide nucleotidyltransferase or phosphorylase [Bacillus amyloliquefaciens DSM 7] gi|310871227|gb|ADP34702.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942] gi|328551764|gb|AEB22256.1| hypothetical protein BAMTA208_00320 [Bacillus amyloliquefaciens TA208] gi|328910024|gb|AEB61620.1| hypothetical protein LL3_00065 [Bacillus amyloliquefaciens LL3] Length = 128 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G++ + +FGAFV G GLVHIS+++ V ++ +K GD V VK+++ Sbjct: 4 EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGDQVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030] gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030] Length = 488 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + ++VV GD V V++LD D D Sbjct: 213 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + +I G+V K++ FGAFV +GLVHIS+L+ V VV +TV+VK++D D Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVTVDETVYVKVIDID 355 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 356 LERRRISLSLK 366 >gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425] gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425] Length = 763 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R +++I+D+ V +G V V +FGAFV +DGLVH+SQL+ V+ +VK Sbjct: 634 RADVKAISDL-SVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSDPKQIVKV 692 Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688 G V V++L+ D++ K I LSM+ Sbjct: 693 GQVVNVRVLEVDEKLKRISLSMR 715 >gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712] Length = 503 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 297 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 356 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 357 DLERRRISLSLKQANESFG 375 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 215 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 274 RERVSLSLKATQED 287 >gi|309782606|ref|ZP_07677329.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA] gi|308918697|gb|EFP64371.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA] Length = 788 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAF+ +DGLVH+S LST+ V +VVK G V VK+++ D R Sbjct: 673 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 732 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 733 NRIGLTMRLSDE 744 >gi|291562742|emb|CBL41558.1| Transcriptional accessory protein [butyrate-producing bacterium SS3/4] Length = 716 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V V+DFGAFV +DGLVHISQ+S + + + V GD V VK+L D + Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSRKYIKHPLEAVSVGDIVEVKVLGVDMAK 704 Query: 681 GKIKLSM 687 +I LSM Sbjct: 705 KRISLSM 711 >gi|323340110|ref|ZP_08080375.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644] gi|323092487|gb|EFZ35094.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644] Length = 164 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G++ + +FGAFV + GLVHIS++S V DV+ GDTV VK+L Sbjct: 4 EVGSKVSGKISGITNFGAFVDLGDKKTGLVHISEVSDGFVKDIHDVLTVGDTVTVKVLSV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS++ Sbjct: 64 GDDGKISLSIR 74 >gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus TM300] Length = 392 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 + I +G+VV++ DFGAFV GLVHIS++S + + S+V++ V VK+L D+ Sbjct: 279 DSIIEGRVVRLTDFGAFVEIAAGVQGLVHISEISRKHIGTPSEVLEPNQEVTVKVLSIDE 338 Query: 680 RG-KIKLSMK 688 +I LS+K Sbjct: 339 ESERISLSIK 348 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G + ++ +FGAFV G DGLVH+S+LS E V K DVV GD V VK+ + D Sbjct: 196 VIEGTIARLTNFGAFVDIGGV-DGLVHVSELSHEHVDKPEDVVSVGDKVNVKVKSVEQDS 254 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 255 ERISLSIK 262 Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 7/86 (8%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I ++ E +KI GQV KV D V G + G+V ISQLST + ++VVKEGD V Sbjct: 10 INEIKEGDKI-SGQVQKVEDKQVIVDVDGGKFSGIVPISQLSTHHIDSPNEVVKEGDAVE 68 Query: 671 -WVKLLDFDDR---GKIKLSMKVVDQ 692 +V ++ D+ G LS++ ++Q Sbjct: 69 AYVTKVEVDEENESGAYILSIRQLEQ 94 >gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300] gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300] Length = 709 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 680 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693 GD TVWVK +D +R K+ LS+ D+ Sbjct: 681 GDLVTVWVKKID-TEREKVNLSLLAPDET 708 >gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14] gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14] Length = 496 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|167770447|ref|ZP_02442500.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM 17241] gi|167667042|gb|EDS11172.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM 17241] Length = 163 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V + FGAF+ G + G+VHIS++++ V + +D + V VK++ Sbjct: 4 EVGSILEGRVTGITKFGAFIELPGGKTGMVHISEVASSYVKEITDYLSMNQMVKVKIIGI 63 Query: 678 DDRGKIKLSMK 688 GK+ LS+K Sbjct: 64 TPEGKVSLSIK 74 >gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450] gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450] Length = 556 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ S+ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLESLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1] Length = 254 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDVNVVMSGNG 209 >gi|307326059|ref|ZP_07605257.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113] gi|306888281|gb|EFN19269.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113] Length = 504 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|314936391|ref|ZP_07843738.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80] gi|313655010|gb|EFS18755.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80] Length = 392 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 N + +G+V+++ +FGAFV GLVHIS+++ + + S+V++ G V VK+L D Sbjct: 279 NDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDE 338 Query: 679 DRGKIKLSMK 688 D +I LS+K Sbjct: 339 DNERISLSIK 348 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG+V ++ +FGAFV G DGLVH+S+LS E V DVV G V VK+ + D Sbjct: 196 VIKGKVARLTNFGAFVDIGGV-DGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDT 254 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 255 ERISLSIK 262 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I D+ E +K+ G+V +V D VH GA+ +G++ ISQLST + S+++ EGD + Sbjct: 10 INDIKEGDKV-TGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIE 68 Query: 671 -WVKLLDFDDRGK 682 +V ++ D+ + Sbjct: 69 AYVTKIEIDEENE 81 >gi|90962328|ref|YP_536244.1| hypothetical protein LSL_1356 [Lactobacillus salivarius UCC118] gi|301300307|ref|ZP_07206514.1| S1 RNA binding domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821522|gb|ABE00161.1| S1-type RNA-binding domain [Lactobacillus salivarius UCC118] gi|300214979|gb|ADJ79395.1| S1-type RNA-binding domain protein [Lactobacillus salivarius CECT 5713] gi|300852080|gb|EFK79757.1| S1 RNA binding domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 154 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 41/71 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + DFGAFV + GLVHIS++S V +V+ GD V VK+L Sbjct: 4 EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 SDDGKIGLSIK 74 >gi|269796749|ref|YP_003316204.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542] gi|269098934|gb|ACZ23370.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542] Length = 816 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V FGAFV +DGLVH+S LS V+ +VVK GD V VK+L D R Sbjct: 660 VLEGVVTNCAAFGAFVDVGVHQDGLVHVSALSDRFVSDPREVVKPGDVVTVKVLTVDVRR 719 Query: 681 GKIKLSMKVVDQNTG 695 G+I L++++ D G Sbjct: 720 GRIGLTLRLEDPVPG 734 >gi|313898405|ref|ZP_07831942.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2] gi|312956787|gb|EFR38418.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2] Length = 715 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 8/81 (9%) Query: 614 TDVPEVNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 +DV E+ ++ +G V V+DFGAFV DGLVHIS++S R+A SD V GD Sbjct: 632 SDVLELEDLHIGDQLEGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRIAHPSDKVSIGD 691 Query: 669 --TVWVKLLDFDDRGKIKLSM 687 VWV +D +++ K++LS+ Sbjct: 692 IVKVWVYNID-EEKQKVQLSL 711 >gi|229822883|ref|ZP_04448953.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271] gi|229787696|gb|EEP23810.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271] Length = 417 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V ++ DFGAFV +GLVHISQ+S E +A + ++EG V VK+L + + Sbjct: 290 VLKGTVKRLTDFGAFVEVLPGVEGLVHISQISHEHIATPGEKLQEGQEVDVKVLSVNPED 349 Query: 681 GKIKLSMKVVDQNTGKP 697 ++ LS+K + + +P Sbjct: 350 QRLSLSIKALLERPARP 366 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 ++ +AE E A + ++ ++ E I +G V ++ +FGAFV+ G DGLVH+S++S Sbjct: 179 LSHKEIAERERAEKRAAALANLVE-GSIVEGTVARLTNFGAFVNL-GDVDGLVHLSRISH 236 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 + K DV+ GD V VK+L + + G++ LS+K Sbjct: 237 SHIRKPGDVLNVGDKVNVKVLSVNPEDGRVSLSIK 271 >gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037] gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037] gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037] gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037] Length = 709 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 680 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693 GD TVWVK +D +R K+ LS+ D+ Sbjct: 681 GDLVTVWVKKID-TEREKVNLSLLAPDET 708 >gi|229820681|ref|YP_002882207.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333] gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333] Length = 488 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V V K G+ V+VK++D D Sbjct: 296 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDID 355 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 356 LERRRISLSLKQANE 370 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 +I G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD + D Sbjct: 213 QIRNGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1] gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1] gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2] gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2] gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1] gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1] gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2] gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1] gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2] gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1] gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1] gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1] gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1] gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3] gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2] gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1] gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1] gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1] gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2] gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1] gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2] gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3] gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2] gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3] gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1] gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1] gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2] gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3] gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1] gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2] gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2] gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1] gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1] gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1] gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266] Length = 254 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +RD+ + G L + GS L G T + ++ E G+ Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 71 Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP AT G SR G R RL R++ V+ A T+ + + Sbjct: 72 WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131 Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477 + ++DG + A++ G+ +AL+DA G +S+P+ G I++G+V D I + Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D++ +ED D V + SG Sbjct: 188 DLAYEEDSRADTDMNVVMSGSG 209 Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220 +++ +SG+ D V + E + +++ + + C + +A S+ Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSE 248 >gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25] gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25] Length = 238 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R + R ++ VR I GS L G+T+ + T+ +E L G + Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT +R A S ++ G RL R++ V+ A + + + Sbjct: 57 GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+S+A+ DA P+ VA +++GL+ GDD +L Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 172 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V T+ G Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195 >gi|310639524|ref|YP_003944282.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2] gi|309244474|gb|ADO54041.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2] Length = 171 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V +D +K D V VK+++ Sbjct: 4 EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63 Query: 678 DDRGKIKLSMKVVDQNTGKP 697 D GKI LS+K Q KP Sbjct: 64 DKDGKIGLSIK---QTIDKP 80 >gi|188585248|ref|YP_001916793.1| RNA binding S1 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349935|gb|ACB84205.1| RNA binding S1 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 727 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G++ V+DFGAFV DGL+HIS LS + V ++V GD V V+++ D DR Sbjct: 660 ILEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDR 719 Query: 681 GKIKL 685 G+I L Sbjct: 720 GRIGL 724 >gi|158318407|ref|YP_001510915.1| RNA-binding S1 domain-containing protein [Frankia sp. EAN1pec] gi|158113812|gb|ABW16009.1| RNA binding S1 domain protein [Frankia sp. EAN1pec] Length = 901 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVH+S +S V+ +V K GD V VK+LD D R Sbjct: 662 ILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIPR 721 Query: 681 GKIKLSMKVVDQ 692 +I L++++ D+ Sbjct: 722 KRISLTLRLDDE 733 >gi|73541033|ref|YP_295553.1| RNA binding S1 [Ralstonia eutropha JMP134] gi|72118446|gb|AAZ60709.1| RNA binding S1 [Ralstonia eutropha JMP134] Length = 802 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS LS + V +VVK G V VK+++ D R Sbjct: 683 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKVMEVDVMR 742 Query: 681 GKIKLSMKVVD---QNTGKP 697 +I LSM++ D Q + +P Sbjct: 743 NRIGLSMRLDDEPGQTSSRP 762 >gi|56479339|ref|YP_160928.1| hypothetical protein ebA6834 [Aromatoleum aromaticum EbN1] gi|56315382|emb|CAI10027.1| conserved hypothetical protein, putative s1 rna binding domain protein [Aromatoleum aromaticum EbN1] Length = 782 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++ D+ + +G V V +FGAFV +DGLVHIS L+ V VVK Sbjct: 638 REGVETLKDLAP-GMMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHSVVKA 696 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 697 GQVVKVKVLEVDLARKRIALTMRMSDE 723 >gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045] gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045] Length = 499 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1] Length = 280 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 VSV+ KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 27 VSVWPTTLGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 80 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 81 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 136 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 137 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIT 196 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ +ED D V + +G Sbjct: 197 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 235 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 52 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 110 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 111 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 164 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 165 TRTASITGAYVALIDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 224 Query: 174 --LDLFVSGTQDAV 185 +++ +SG D V Sbjct: 225 TDMNVVMSGNGDFV 238 >gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641] gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641] Length = 708 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HISQ+S + + S VV GD TVWV +D +R Sbjct: 637 EGVVRNVVDFGAFVDIGIHEDGLIHISQMSQQFIKHPSQVVSVGDLVTVWVYKIDL-ERE 695 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 696 KVNLSL 701 >gi|227509309|ref|ZP_03939358.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191239|gb|EEI71306.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 169 Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G+V + +FGAF+ R GLVHIS++S V DV+K GD V VK+L Sbjct: 4 EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63 Query: 678 DDRGKIKLSMK 688 + KI LS++ Sbjct: 64 EGNNKISLSIR 74 >gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25] gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25] Length = 240 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R + R ++ VR I GS L G+T+ + T+ +E L G + Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT +R A S ++ G RL R++ V+ A + + + Sbjct: 59 GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 118 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+S+A+ DA P+ VA +++GL+ GDD +L Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V T+ G Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEG 197 >gi|149377379|ref|ZP_01895123.1| ribosomal protein S1 [Marinobacter algicola DG893] gi|149358303|gb|EDM46781.1| ribosomal protein S1 [Marinobacter algicola DG893] Length = 564 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%) Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659 AE A RE ++ ++T+ E+ KG V + D+GAFV G DGL+HI+ ++ +R+ Sbjct: 176 AENSAEREALLETLTEGLEI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230 Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S++V GD + VK+L FD +R ++ L +K Sbjct: 231 PSEIVNVGDEINVKVLKFDRERNRVSLGLK 260 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE K+ +V + D+G F +GLVH+S++ T + S VV+ GD V V +L Sbjct: 275 PEGTKVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMIL 333 Query: 676 DFD-DRGKIKLSMK 688 D D +R +I L +K Sbjct: 334 DIDEERRRISLGIK 347 Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 G++ + DFG F+ G DGLVH+S +S + + K+GD V +L D +R + Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVILSVDPERER 428 Query: 683 IKLSMK 688 I L +K Sbjct: 429 ISLGIK 434 >gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780] gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780] Length = 709 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKKFIKHPSQVVSV 680 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694 GD TVWVK +D R K+ LS+ D++ Sbjct: 681 GDLVTVWVKKIDV-QREKVNLSLLAPDESN 709 >gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653] gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653] Length = 502 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|255660000|ref|ZP_05405409.1| protein YhgF [Mitsuokella multacida DSM 20544] gi|260847753|gb|EEX67760.1| protein YhgF [Mitsuokella multacida DSM 20544] Length = 733 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V + DFGAFV DGL+HIS+L+ RV +VV G + V ++ D+ R Sbjct: 658 ILRGTVRNITDFGAFVDIGLHEDGLIHISELAKRRVKHPLEVVSIGQVLRVMVISVDEKR 717 Query: 681 GKIKLSMKVVDQ 692 G+I LS+K V + Sbjct: 718 GRIGLSLKRVPE 729 >gi|82750215|ref|YP_415956.1| hypothetical protein SAB0457 [Staphylococcus aureus RF122] gi|82655746|emb|CAI80145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus RF122] Length = 133 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG++ + FGAFV + GLVHIS+++ V + + GD V VK+L Sbjct: 4 EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63 Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697 D GKI LS+K Q+T KP Sbjct: 64 ADDGKISLSIKKAKDRPRRQHTSKP 88 >gi|148263533|ref|YP_001230239.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4] gi|146397033|gb|ABQ25666.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4] Length = 584 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G + ++ L E E + ++ + E + G V + D+GAFV G DGL+H++ Sbjct: 189 GNIVLSRRVLLEEERDKARTTTLATLSE-GDVVDGIVKNIADYGAFVDLGGV-DGLLHVT 246 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 +S R+ S+ VK GDT+ VK+L +D ++GKI L +K Sbjct: 247 DMSWGRLNHPSEAVKVGDTIKVKVLKYDREKGKISLGLK 285 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG+V + DFG F+ +GLVHIS+LS E++A T D GD + +L+ D K Sbjct: 480 KGKVTSITDFGVFMEIEEGIEGLVHISELSQEKLASTKDFAAVGDELDAVVLNVDTVEKK 539 Query: 683 IKLSMK 688 I LS+K Sbjct: 540 IALSIK 545 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681 +G+VV + D+GAF+ +GLVHIS++S T+RV S+++ GD V +L D Sbjct: 306 QGRVVSLTDYGAFIALEEGVEGLVHISEMSWTKRVRHPSELLTVGDNVEALILGVDTSNR 365 Query: 682 KIKLSMKVVDQN 693 +I L +K + N Sbjct: 366 RISLGLKQTEVN 377 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 +GQ+ + DFG F+ DGLVH+S +S T+R+ ++ +G TV +L+ D D Sbjct: 393 EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGELYSKGQTVQAVVLNIDADNE 452 Query: 682 KIKLSMK 688 ++ L +K Sbjct: 453 RLSLGIK 459 >gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2] Length = 254 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR + +RD+ + G L + GS L G T + ++ E G+ Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 71 Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP AT G SR G R RL R++ V+ A T+ + + Sbjct: 72 WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131 Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477 + ++DG + A++ G+ +AL+DA G +S+P+ G I++G+V D I + Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D++ +ED D V + SG Sbjct: 188 DLAYEEDSRADTDMNVVMSGSG 209 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%) Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70 R +++E G ++ Q++G+VL ++G T VL + + G +T Y+ A Sbjct: 26 RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84 Query: 71 GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125 + G RESR + ISR++ RS+R + E +I+ +V+Q D Sbjct: 85 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138 Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173 S+ A AL+ L P G V V ++G +L+ +ED + Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198 Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220 +++ +SG+ D V + E + +++ + + C + +A S+ Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSE 248 >gi|239940449|ref|ZP_04692386.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379] gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998] Length = 504 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1] gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1] Length = 505 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|171779310|ref|ZP_02920274.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281927|gb|EDT47358.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 398 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLEVNAAA 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E I KG+V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250 Query: 678 DDR-GKIKLSMK 688 D+ G++ LS+K Sbjct: 251 DEEAGRVSLSLK 262 >gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saphenum ATCC 49989] gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium saphenum ATCC 49989] Length = 703 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G +V++ ++GAF+ DGL+HIS++S RV + V+ GD V K+L+ D DR + Sbjct: 585 EGDIVQIKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRR 644 Query: 683 IKLSMKVV 690 I LS+K + Sbjct: 645 ISLSIKAL 652 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 5/75 (6%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G+V++ ++GAFV G DGL+HIS++S ++ S+V+ GDT+ VK+L + ++GK Sbjct: 500 EGKVMRFTEYGAFVDI-GGVDGLLHISEISWGKLKHPSEVLTVGDTINVKILSLNPEKGK 558 Query: 683 IKLSMKVVDQNTGKP 697 I L K QN +P Sbjct: 559 ISLGYK---QNMPEP 570 >gi|238927157|ref|ZP_04658917.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531] gi|238884939|gb|EEQ48577.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531] Length = 154 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689 + +FGAFV + GL+HIS+++ V D +KE D V VK+L D+RGKI LS+K Sbjct: 22 ITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKEHDKVKVKVLTVDERGKIGLSIKA 81 Query: 690 V 690 + Sbjct: 82 L 82 >gi|226366001|ref|YP_002783784.1| transcriptional accessory protein [Rhodococcus opacus B4] gi|226244491|dbj|BAH54839.1| transcriptional accessory protein [Rhodococcus opacus B4] Length = 807 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 19/149 (12%) Query: 563 IRNVIGMGGKVIRGIVEQTGA--KVN----IDDDGTVKIASSSLAEIEAA----REMIRS 612 +R ++ G +R I+ T A +N +DD + + + E+E R ++ Sbjct: 565 VRKIVQTSGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624 Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 T + K+ +G V V FGAFV +DGLVH+S +S V DVV Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684 Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692 K GD V VK+L+ D+ R +I L++++ D+ Sbjct: 685 KSGDVVTVKVLEVDEARQRIGLTLRLDDE 713 >gi|261855929|ref|YP_003263212.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2] gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2] Length = 560 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V + D+GAF+ G DGL+HI+ ++ +RV S+VV GD V VK+L FD DR Sbjct: 197 VLRGVVKNLTDYGAFLDLGGI-DGLLHITDMAWKRVKHPSEVVNIGDEVDVKVLKFDRDR 255 Query: 681 GKIKLSMK 688 ++ L MK Sbjct: 256 NRVSLGMK 263 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + D+G FV +GLVH+S++ T + VV GD V V +LD D +R + Sbjct: 285 GKVTNLTDYGCFVEIDNGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRR 344 Query: 683 IKLSMKVVDQN 693 I L MK N Sbjct: 345 ISLGMKQCQAN 355 Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 GQ+ + DFG F+ G DGL+H+S LS + + K+G+ + ++ D +R + Sbjct: 372 GQIKSITDFGVFIGLDGGIDGLIHLSDLSWNEAGEEAVRQFKKGEEIEAVVIAIDPERER 431 Query: 683 IKLSMKVVDQN 693 I L +K ++ + Sbjct: 432 ISLGLKQLESD 442 >gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1] gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1] Length = 503 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K +++ G Sbjct: 355 DLERRRISLSLKQANESFG 373 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 >gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)] gi|256788388|ref|ZP_05526819.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)] gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24] Length = 502 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|90421783|ref|YP_530153.1| RNA binding S1 [Rhodopseudomonas palustris BisB18] gi|90103797|gb|ABD85834.1| RNA binding S1 [Rhodopseudomonas palustris BisB18] Length = 782 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS +S + +VVK GD V VK+L+ D R Sbjct: 655 VLEGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVKVLEVDVAR 714 Query: 681 GKIKLSMKVVDQNTGK 696 +I LS+++ D+ K Sbjct: 715 KRIALSLRLDDEVGAK 730 >gi|302338566|ref|YP_003803772.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293] gi|301635751|gb|ADK81178.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293] Length = 571 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676 +VN I KG V K+ DFGAF+ +GL HIS+LS +R+ +V+ GD V V +L Sbjct: 284 QVNDIVKGTVTKLTDFGAFIELEEGIEGLAHISELSWVKRINHPKEVLNIGDEVDVMILS 343 Query: 677 FD-DRGKIKLSMKVVDQN 693 +D +G++ L +K V N Sbjct: 344 YDIQQGRVSLGLKQVRPN 361 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V FGAF+ G DGL+HI+ +S V + D VK+G V +K++ D Sbjct: 200 IGDVVTGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDYVKKGQEVELKVIKLD 258 Query: 679 -DRGKIKLSMK 688 + KI LS+K Sbjct: 259 PEEQKINLSLK 269 >gi|239978882|ref|ZP_04701406.1| 30S ribosomal protein S1 [Streptomyces albus J1074] gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074] gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074] Length = 504 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|257064689|ref|YP_003144361.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476] gi|256792342|gb|ACV23012.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476] Length = 407 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I G+V K++ FGAFV +GLVHIS+++ R+ + VVK G V VK+++ + +R Sbjct: 294 IIDGKVTKIVPFGAFVELGNNVEGLVHISEMAPRRIDTPAQVVKVGQDVKVKVMEVNPER 353 Query: 681 GKIKLSMKVVDQNTG 695 +I LSMK G Sbjct: 354 RRISLSMKAAAAELG 368 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKI 683 G V ++DFGAFV G DGLVHIS+LS V S+VVK G L DR +I Sbjct: 212 GVVSSIVDFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVEVLKVELDRERI 270 Query: 684 KLSMKVVDQNTGKP 697 L +K Q T P Sbjct: 271 SLGLK---QTTEDP 281 >gi|320529060|ref|ZP_08030152.1| S1 RNA binding domain protein [Selenomonas artemidis F0399] gi|320138690|gb|EFW30580.1| S1 RNA binding domain protein [Selenomonas artemidis F0399] Length = 733 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ I ++D+ V + +G V + DFGAF+ + GL+HIS++S RV DV+ Sbjct: 639 RQNIVKLSDLA-VGTVLRGTVRNITDFGAFIDIGLKQAGLLHISEMSGRRVRHPLDVLSV 697 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 GD + V ++ D+ RG+I LS+K Sbjct: 698 GDVLDVMIISIDETRGRIGLSLK 720 >gi|260437065|ref|ZP_05790881.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] gi|292810374|gb|EFF69579.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio crossotus DSM 2876] Length = 367 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG+V ++ DFGAFV D L+H+SQ++ + + K ++V+K G + K++D + Sbjct: 280 VGSVVKGKVARMTDFGAFVELEEGVDALLHVSQIAKQHIEKPAEVLKIGQEIEAKVVDLN 339 Query: 679 -DRGKIKLSMKVV 690 D KI LS+K + Sbjct: 340 ADEHKISLSIKAL 352 Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V ++ G V V DFG F+ G DGL+H+S++S R+ K GD V + D + Sbjct: 197 VGQVVTGTVKNVTDFGVFIDIGGV-DGLLHVSEISWGRIENPKKKFKPGDEVKAYIKDIN 255 Query: 679 DRGKIKLSMKVVDQN 693 + KI LS+K ++N Sbjct: 256 N-DKIALSLKFDNEN 269 >gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000] gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000] Length = 497 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720] gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720] Length = 1677 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676 E+ +IY G V KV D+G FV G A DGL H S+++ +V + + EGD V VK+L Sbjct: 1212 EIGEIYDGTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKVKILK 1271 Query: 677 -FDDRGKIKLSMK 688 F D+ ++ L MK Sbjct: 1272 IFKDKKQLSLGMK 1284 >gi|304310672|ref|YP_003810270.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1] gi|301796405|emb|CBL44613.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1] Length = 551 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 8/127 (6%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622 +R+ + GK + V + AK N V ++ ++ E E + E ++++ E ++ Sbjct: 136 VRDTAHLEGKELEFKVIKLDAKRN-----NVVVSRRAVLEAENSAEREALLSNLQEGMEV 190 Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG V + D+GAFV G DGL+HI+ ++ +R+ S++V GD + VK+L FD DR Sbjct: 191 -KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVAVGDEILVKVLKFDRDRN 248 Query: 682 KIKLSMK 688 ++ L +K Sbjct: 249 RVSLGLK 255 Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE ++ K +V + D+G F +GLVH+S++ T + S VV G+ + V +L Sbjct: 270 PEGARV-KARVTNLTDYGCFAELQEGVEGLVHVSEMDWTNKNIHPSKVVSIGEEIEVVIL 328 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 329 DIDEERRRISLGVKQCKPN 347 >gi|262274461|ref|ZP_06052272.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886] gi|262221024|gb|EEY72338.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886] Length = 556 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ S+ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEINVKVLKFDRDRTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRG 681 G++ + DFG F+ G DGLVH+S +S VA V K+GD + +L D +R Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISW-NVAGEEAVRDFKKGDEISAVVLQVDAERE 427 Query: 682 KIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 428 RISLGIKQMEED 439 >gi|15900746|ref|NP_345350.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TIGR4] gi|111657643|ref|ZP_01408376.1| hypothetical protein SpneT_02001175 [Streptococcus pneumoniae TIGR4] gi|149004073|ref|ZP_01828879.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69] gi|168484699|ref|ZP_02709651.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC1873-00] gi|168575518|ref|ZP_02721454.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016] gi|237650398|ref|ZP_04524650.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974] gi|237822248|ref|ZP_04598093.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974M2] gi|14972334|gb|AAK74990.1| ribosomal protein S1 [Streptococcus pneumoniae TIGR4] gi|147757974|gb|EDK64982.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69] gi|172042098|gb|EDT50144.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC1873-00] gi|183578463|gb|EDT98991.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016] gi|332202718|gb|EGJ16787.1| hypothetical protein SPAR69_0831 [Streptococcus pneumoniae GA41317] gi|332204016|gb|EGJ18083.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368] Length = 400 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAFV G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFVDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|31789463|gb|AAP58577.1| putative 30S ribosomal protein S1 [uncultured Acidobacteria bacterium] Length = 318 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G++ + +FGAFV +GL HIS+LS ERV K DVV+ G + K+L D + Sbjct: 144 VVRGKIARFANFGAFVELDDNLEGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVES 203 Query: 681 GKIKLSMKVVDQNTGKPIV 699 KI LS + V ++ +PIV Sbjct: 204 KKIGLSARSVGKDD-EPIV 221 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 6/74 (8%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEG---DTVWVKLLDFDDR 680 G+V + DFGAF+ DGLVH+S +S + R+ S+V+K+G D V + +D ++R Sbjct: 60 GRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAV-ITSIDAENR 118 Query: 681 GKIKLSMKVVDQNT 694 ++ LS+K ++ N Sbjct: 119 -RLSLSIKDLEPNA 131 >gi|299144438|ref|ZP_07037518.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518923|gb|EFI42662.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 133 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 47/79 (59%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V +I G V V+ FGAF++ GLVHIS++S V SD +K+G V VK+L D Sbjct: 5 VGQIVDGVVSGVLKFGAFINLPEDNSGLVHISEISDSYVENVSDFLKKGQKVKVKVLSLD 64 Query: 679 DRGKIKLSMKVVDQNTGKP 697 DRGKI LS+K + KP Sbjct: 65 DRGKIALSIKQAQVKSSKP 83 >gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] Length = 432 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 24/204 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR ++ R ++ + L+ GS L GDT+ I T+ T+ L G Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETK----VPRFLKGMGS 56 Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426 Y+ LP AT E ++ G S R + RL R++ + A ++ + Sbjct: 57 GWVHAEYSMLPRATNTRNIREAAK-GKLSGRTMEIQRLIARSLRSCIDLEALGERSITVD 115 Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +A L+D+G PI + VA I++G+++DG + Sbjct: 116 CDVIQADGGTRTASITGAFVALKLAIQTLLDSGELALSPIKENVAAISVGILEDGQAVL- 174 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 D++ ED ++D + T G Sbjct: 175 --DLNYLEDSAANVDMNLVMTSGG 196 >gi|317478706|ref|ZP_07937860.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36] gi|316905136|gb|EFV26936.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36] Length = 704 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 +R+I D+ E ++ G V + +FGAFV +GLVH+SQL+ ++ ++VV Sbjct: 621 VRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 679 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693 + VK+L D DR +I+L+MK V+QN Sbjct: 680 IRVKVLSIDMDRKRIQLTMKGVEQN 704 >gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1] Length = 500 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|296158978|ref|ZP_06841806.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1] gi|295890853|gb|EFG70643.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1] Length = 782 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729 >gi|116493258|ref|YP_804993.1| transcriptional accessory protein [Pediococcus pentosaceus ATCC 25745] gi|116103408|gb|ABJ68551.1| Transcriptional accessory protein [Pediococcus pentosaceus ATCC 25745] Length = 722 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+L V + SDVV GD VWV+ +D +R Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDV-ERH 712 Query: 682 KIKLSM 687 +I+L+M Sbjct: 713 RIQLTM 718 >gi|15615909|ref|NP_244213.1| general stress protein 13 [Bacillus halodurans C-125] gi|10175970|dbj|BAB07066.1| polyribonucleotide nucleotidyltransferase (general stress protein 13) [Bacillus halodurans C-125] Length = 138 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV I +G+V + FGAFV + GLVHIS+++ V +DV+ GD V VK+L Sbjct: 5 EVGSIVEGKVTGIKPFGAFVAIDDQKQGLVHISEVAHGFVKDINDVLSVGDEVKVKILSV 64 Query: 678 DDR-GKIKLSMKVVDQNTGKP 697 D+ GKI LS++ + +P Sbjct: 65 DEESGKISLSIRATQEAPERP 85 >gi|294102013|ref|YP_003553871.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM 12261] gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM 12261] Length = 503 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V + FGAF++ G DGLVHIS+LS +R K +VVK+G+TV VK++ + + Sbjct: 213 ILEGRVSSITSFGAFINL-GPIDGLVHISELSWKRNVKPKEVVKKGETVKVKVIGIEQEN 271 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 272 NRVSLSIK 279 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 38/53 (71%) Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 +VV++ DFGAFV +GL+HISQLST+RV K DV+ EG+ V ++++ + Sbjct: 387 KVVRLADFGAFVEVEEGVEGLIHISQLSTKRVDKPEDVLSEGEEVLARVIEIN 439 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 32/58 (55%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 G V V DFGAFV +GL+HI LS R+ DV+K+G V V +LD D K Sbjct: 301 GVVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKK 358 >gi|323526564|ref|YP_004228717.1| Tex-like protein [Burkholderia sp. CCGE1001] gi|323383566|gb|ADX55657.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1001] Length = 780 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729 >gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910] gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910] Length = 596 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 5/89 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 A+IE + + I E ++ +G V + +G F+ G DGL+HI+ LS RV Sbjct: 207 ADIEGQK---KEIIAQLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLSWSRVNHP 262 Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688 S+++++G TV V +LDFDD + +I+L MK Sbjct: 263 SEILEDGQTVKVVILDFDDEKTRIQLGMK 291 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG+VV + D+GAFV +GL+H+S++S + + D VK GD V ++L D + Sbjct: 312 KGKVVVLADYGAFVEIAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREER 371 Query: 682 KIKLSMKVVDQNTGKPI 698 KI L +K + ++ + I Sbjct: 372 KISLGIKQLSKDPWENI 388 >gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514] gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514] Length = 553 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + GQV K+ FGAFV DGLVHISQ+S ERV K +V+K G V +++ Sbjct: 442 KVGDLVTGQVTKLASFGAFVGLQHEIDGLVHISQVSEERVDKIKNVLKVGQEVTARVIKI 501 Query: 678 D--DRGKIKLSMK 688 D DR +I LS+K Sbjct: 502 DKSDR-RIGLSIK 513 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V + DFGAF+ G DGL+HI+ +S R+A SD++K G + V +LD + ++ Sbjct: 187 IRKGTVKNITDFGAFIDLNGI-DGLLHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEK 245 Query: 681 GKIKLSMK 688 ++ L +K Sbjct: 246 ERVSLGLK 253 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG+VV ++ +GAFV +GLVH+++LS T+R+AK +DV+K + +L + + Sbjct: 274 KGKVVNLVPYGAFVELEPGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQ 333 Query: 682 KIKLSMKVVDQN 693 KI L ++ ++ N Sbjct: 334 KISLGVRQLETN 345 Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 KG++ + +GAF+ DG++H+S +S T ++ S+V+K+GD V +L+ D Sbjct: 361 KGKIRNLTSYGAFIELEEGLDGMIHVSDISWTRKINHPSEVLKKGDEVEAVVLEID 416 >gi|91784192|ref|YP_559398.1| S1 RNA-binding domain-containing protein [Burkholderia xenovorans LB400] gi|91688146|gb|ABE31346.1| S1 RNA binding domain protein [Burkholderia xenovorans LB400] Length = 781 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729 >gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2] gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2] Length = 246 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 41/209 (19%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + +R + + +++ GS + GDT+ + T+ D L G +R Sbjct: 8 RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATI--------EDGLPGWRRA 59 Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP +TG +RRE G R + I ++ ++ + LR + E Sbjct: 60 SRSGWVTAEYAMLPASTGR------RTRREFGQRRGRSQEIERLIGRSLRTATNLRALGE 113 Query: 429 IT--------ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKD 469 T ++DG + A + G+ +AL DA +P+ VA ++MGLV D Sbjct: 114 HTVTIDCDVIQADGGTRTAALTGAWVALHDALAAWVEAARIPRIPLVSQVAAVSMGLV-D 172 Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDS 498 G+ +L D+ ED +D + T S Sbjct: 173 GN---VLLDLDYAEDSRAEVDMNLVCTQS 198 >gi|322381802|ref|ZP_08055756.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154190|gb|EFX46512.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 411 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 6/87 (6%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E++ SI EV ++++G V ++ FGAFV G DGLVHIS+++ V S+VVKE Sbjct: 197 KEILNSI----EVGQVFEGTVQRLTQFGAFVD-IGGLDGLVHISEMAWHHVDHPSEVVKE 251 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+L D + K+ LS+K +Q Sbjct: 252 GDKVKVKVLKVDPEHDKVSLSIKATEQ 278 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + I G V ++ FGAFV +GLVHISQ++ + +V+KEG V VK+LD + Sbjct: 290 IGDIVDGTVKRLASFGAFVEITPGVEGLVHISQIAHRHIGTPQEVLKEGQEVKVKILDIN 349 Query: 679 DRGK-IKLSMK 688 K I LS+K Sbjct: 350 AAEKRISLSIK 360 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 604 EAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 +A +E +++ V + K I KG++VKV AFV DG++ + +LS+ +V Sbjct: 15 DAGQEAQEAMSQVATLKKGDIVKGKIVKVEQDQAFVDIGYKYDGIIPVRELSSVQVDTAD 74 Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 V+ G V K++ DD + K+ LS + VD Sbjct: 75 KAVEVGQEVEAKVVTIDDNKEKLVLSKRAVD 105 >gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] Length = 257 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 25/197 (12%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR +R +S Q G GS L G T+ + ++ +E+ L G+ R Sbjct: 10 RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASV----EEKVPPFLRGSDRG 65 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP +T ++SR G + R RL R++ + + T+ I Sbjct: 66 WVTAEYSLLPRSTSTRVPRDISR-GKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDC 124 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A V G +AL+DA +P+ VA +++G + +L Sbjct: 125 DVLQADGGTRSAAVTGGFVALVDALRHLWRIGKLKSIPLRSYVAAVSVGKISGK----LL 180 Query: 477 SDISGDEDHLGHMDFKV 493 +D+ DED +D V Sbjct: 181 TDLCYDEDSRAEVDMNV 197 >gi|227891602|ref|ZP_04009407.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227866749|gb|EEJ74170.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 154 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 41/71 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + DFGAFV + GLVHIS++S V +V+ GD V VK+L Sbjct: 4 EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 SDDGKIGLSIK 74 >gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 490 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 211 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFD 269 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 270 RERVSLSLKATQED 283 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV G V+VK++D D Sbjct: 294 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVTVGQEVFVKVIDID 353 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 354 LERRRISLSLKQANE 368 >gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74] gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74] Length = 504 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|168184863|ref|ZP_02619527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 homolog [Clostridium botulinum Bf] gi|237795216|ref|YP_002862768.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672058|gb|EDT84019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 homolog [Clostridium botulinum Bf] gi|229260583|gb|ACQ51616.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein S1 [Clostridium botulinum Ba4 str. 657] Length = 644 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 587 IDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645 I D KI S ++ R E I + E + + +G+V + +FGAF+ G DG Sbjct: 451 IKDRYKTKIVGSRRNILKTIRDEHIEETWNSLEKDTVVEGEVKRFTNFGAFIEINGV-DG 509 Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 L+H+S++S RV K D +K GD + V +LD D + K+ LS+K + ++ K + Sbjct: 510 LLHVSEISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 563 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+VV+ +FGAF+ DGLVHIS++S +R+ K + + G V K+L+ + +I Sbjct: 575 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 634 Query: 684 KLSMKVVDQ 692 LS+K V++ Sbjct: 635 ALSIKDVEE 643 >gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7] gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7] Length = 239 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R GR ++ +R I + GS L GDT+ I V+ + L G + Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP +TGE ++ A ++ G RL R++ L + TL I + Sbjct: 59 WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ G+++AL+DA G P+ + VA +++G+ + + + Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V TDSG Sbjct: 175 DLDYLEDSAAETDLNVVMTDSG 196 >gi|39997697|ref|NP_953648.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA] gi|39984589|gb|AAR35975.1| ribosomal protein S1 [Geobacter sulfurreducens PCA] Length = 574 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G + ++ L E E A ++ ++ E + +G V + D+GAFV G DGL+H++ Sbjct: 177 GNIVLSRRVLLEEERAGVRTETLANLAE-GQTREGVVKNITDYGAFVDIGGV-DGLLHVT 234 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +S R+ S+++K GD + VK+L +D ++GKI L +K + Sbjct: 235 DMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQI 275 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G+V V DFG F+ +GLVH+S+LS E+VA D GD + +L DD K Sbjct: 468 RGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKK 527 Query: 683 IKLSMKVV 690 I LS+K + Sbjct: 528 IALSVKAL 535 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 G+VV + D+GAFV +GLVH+S++S T+R+ SD++ GD V +L D + Sbjct: 295 GRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRR 354 Query: 683 IKLSMKVVDQN 693 I L +K N Sbjct: 355 ISLGLKQAQAN 365 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +GQ+ + DFG F+ DGLVH+S +S T+R+ +V +G TV +L+ D Sbjct: 381 EGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVD 436 >gi|88798566|ref|ZP_01114150.1| Transcriptional accessory protein [Reinekea sp. MED297] gi|88778666|gb|EAR09857.1| Transcriptional accessory protein [Reinekea sp. MED297] Length = 775 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++ D+ N +G V V FGAFV +DGLVHIS +S V S VVK Sbjct: 637 QEGVETLKDL-RPNMTLEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHSFVDDPSSVVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D R +I LSM++ D Sbjct: 696 GDIVKVKVMEVDVARKRIALSMRLDD 721 >gi|168212813|ref|ZP_02638438.1| ribosomal protein S1 family [Clostridium perfringens CPE str. F4969] gi|170715502|gb|EDT27684.1| ribosomal protein S1 family [Clostridium perfringens CPE str. F4969] Length = 378 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDIDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|309389058|gb|ADO76938.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium praevalens DSM 2228] Length = 721 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G++ K++DFGAF+ +GL+HISQLS V T +VV GD K+++ D D Sbjct: 597 EVIEGKITKLVDFGAFMEVEKGIEGLIHISQLSHRHVKTTDEVVSVGDVKEAKIINIDAD 656 Query: 680 RGKIKLSMKVVDQ 692 + ++ LS+K +++ Sbjct: 657 QERVGLSLKELEE 669 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648 D+ V ++ + E E A + ++ + E + +G V K++DFGAF+ G +GL+H Sbjct: 481 DNNNVVLSHKKVLEKERAAKKEETLASLEE-GQTVEGTVTKLVDFGAFIDLGGI-EGLLH 538 Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 IS++S R+ ++V+ EG+ V VK+L + + +I L +K Sbjct: 539 ISEMSWGRIESPAEVLTEGEKVEVKVLGVNKEEERISLGLK 579 >gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 709 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676 V + +G V V+DFGAFV DGL+HIS +S + + S VV GD TVWVK +D Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692 Query: 677 FDDRGKIKLSMKVVDQNT 694 +R K+ LS+ D++ Sbjct: 693 -TEREKVNLSLLAPDESN 709 >gi|298506630|gb|ADI85353.1| ribosomal protein S1 [Geobacter sulfurreducens KN400] Length = 586 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650 G + ++ L E E A ++ ++ E + +G V + D+GAFV G DGL+H++ Sbjct: 189 GNIVLSRRVLLEEERAGVRTETLANLAE-GQTREGVVKNITDYGAFVDIGGV-DGLLHVT 246 Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +S R+ S+++K GD + VK+L +D ++GKI L +K + Sbjct: 247 DMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQI 287 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 +G+V V DFG F+ +GLVH+S+LS E+VA D GD + +L DD K Sbjct: 480 RGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKK 539 Query: 683 IKLSMKVV 690 I LS+K + Sbjct: 540 IALSVKAL 547 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 G+VV + D+GAFV +GLVH+S++S T+R+ SD++ GD V +L D + Sbjct: 307 GRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRR 366 Query: 683 IKLSMKVVDQN 693 I L +K N Sbjct: 367 ISLGLKQAQAN 377 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +GQ+ + DFG F+ DGLVH+S +S T+R+ +V +G TV +L+ D Sbjct: 393 EGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVD 448 >gi|307729263|ref|YP_003906487.1| Tex-like protein [Burkholderia sp. CCGE1003] gi|307583798|gb|ADN57196.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1003] Length = 781 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729 >gi|288554672|ref|YP_003426607.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4] gi|288545832|gb|ADC49715.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4] Length = 159 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V ++ +K G+ V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGEEVTVKVVNV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS++ Sbjct: 64 EKDGKIGLSIR 74 >gi|187924504|ref|YP_001896146.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN] gi|187715698|gb|ACD16922.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN] Length = 782 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729 >gi|110799693|ref|YP_696828.1| 30S ribosomal protein S1 [Clostridium perfringens ATCC 13124] gi|168208852|ref|ZP_02634477.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC 3626] gi|168215777|ref|ZP_02641402.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239] gi|110674340|gb|ABG83327.1| ribosomal protein S1 family [Clostridium perfringens ATCC 13124] gi|170713092|gb|EDT25274.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC 3626] gi|182382017|gb|EDT79496.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239] Length = 378 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603] Length = 488 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656 S A +E + +RS + ++ G V +++FGAFV G DGLVH+S+LS + Sbjct: 183 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 241 Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 + S+VV+ G V V++LD D DR ++ LS+K ++ Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 279 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV GD +VK++D D Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKVIDID 349 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 350 LERRRISLSLK 360 >gi|251794092|ref|YP_003008823.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] gi|247541718|gb|ACS98736.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2] Length = 162 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V D +K D V VK+++ Sbjct: 4 EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKIDDVVKVKVINV 63 Query: 678 DDRGKIKLSMK-VVDQNTGK 696 D GKI LS+K VD+ G+ Sbjct: 64 DKDGKIGLSIKQAVDRPEGQ 83 >gi|166712336|ref|ZP_02243543.1| transcription-related protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 786 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I LS ++ D Sbjct: 717 KRIALSCRLSD 727 >gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672] gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672] Length = 238 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 23/244 (9%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR ++ +RDI ++ GS L G+T+ I T+ E L GT Sbjct: 1 MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATI----SEGVPPFLKGTGT 56 Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LPC+T S+ G + R RL R++ + + T+ I Sbjct: 57 GWLTSEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477 ++ ++DG + A++ G LAL A G PI VA +++G+V +G+ I+ Sbjct: 117 DVIQADGGTRTASITGGFLALYIACQKLSEDLKIGNPIKSFVAAVSLGIV-NGE---IML 172 Query: 478 DISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536 D++ +ED D +A S I +Q + G ++++ + G +++ Sbjct: 173 DLNYEEDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQK 232 Query: 537 KVLS 540 +VL+ Sbjct: 233 RVLN 236 >gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665] Length = 413 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ Sbjct: 134 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 192 Query: 678 D-DRGKIKLSMKVVDQN 693 D DR ++ LS+K ++ Sbjct: 193 DMDRERVSLSLKATQED 209 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L++ + VV D ++VK++D D Sbjct: 220 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 279 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 280 LERRRISLSLKQANE 294 >gi|226327578|ref|ZP_03803096.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198] gi|225204104|gb|EEG86458.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198] Length = 779 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS L+ + VVK GD V VK+L+ D R Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLADRFIEDPHTVVKTGDIVKVKVLEVDLAR 711 Query: 681 GKIKLSMKV 689 +I L+M++ Sbjct: 712 KRIALTMRL 720 >gi|46580651|ref|YP_011459.1| S1 RNA-binding domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450070|gb|AAS96719.1| S1 RNA binding domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234383|gb|ADP87237.1| Tex-like protein protein-like protein [Desulfovibrio vulgaris RCH1] Length = 723 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V FGAFV RDGLVH+SQL+ V ++VV G V V++LD D R +I Sbjct: 653 GIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERI 712 Query: 684 KLSMKVVDQN 693 L++K V Q Sbjct: 713 NLTLKGVPQQ 722 >gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78] gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG] gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF] gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78] Length = 504 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI-----RSITDVPEVNKIYKGQVVKV 630 G VE N+DD V I + +I +R+ ++ V + G+V ++ Sbjct: 225 GRVENPRKVFNVDDKVRVFIKEINGTKIALSRKFADENPWNGASEKFAVGTVVAGKVARM 284 Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKV 689 DFGAF+ D L+H+SQ+S + V K SD++ G V +++F + KI LSMK Sbjct: 285 TDFGAFIELAPGIDALLHVSQISKDHVDKPSDILSVGQEVTAVIVEFREADHKISLSMKA 344 Query: 690 VDQNTGK 696 +D + + Sbjct: 345 LDDSNSR 351 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I + + +E E+ + + + +V I +G + + DFGAFV G DGL+HIS++S Sbjct: 166 IGNRKMILVERKSEIQKDLLEKLKVGDIIEGTIKNITDFGAFVDLGGI-DGLLHISEMSW 224 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693 RV V D V V + + + KI LS K D+N Sbjct: 225 GRVENPRKVFNVDDKVRVFIKEINGT-KIALSRKFADEN 262 >gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335] gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335] Length = 304 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679 ++ +G + + FGAFV F GA GL+HI Q+S ++ DV K GD + +L+ D+ Sbjct: 201 ELIEGTIASLKPFGAFVDFGGA-SGLLHIKQISKSYISALGDVFKVGDPIKAVVLNIDEQ 259 Query: 680 RGKIKLSMKVVDQNTGK 696 RG+I LS +V+++ G+ Sbjct: 260 RGRIALSTQVLEKYPGE 276 >gi|110802114|ref|YP_699426.1| 30S ribosomal protein S1 [Clostridium perfringens SM101] gi|110682615|gb|ABG85985.1| ribosomal protein, S1 family [Clostridium perfringens SM101] Length = 378 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|167038148|ref|YP_001665726.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116557|ref|YP_004186716.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856982|gb|ABY95390.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929648|gb|ADV80333.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 712 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFG FV DGLVHIS++S + DVV GD V V++L D +R +I Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083] gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083] Length = 503 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202] gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202] Length = 254 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%) Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351 +SV+ I KV T R+DGR + +RD+ + G L + GS L G T + Sbjct: 1 MSVWSTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54 Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407 ++ E G+ Y LP AT G SR G R RL R Sbjct: 55 ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110 Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460 ++ V+ A T+ + ++ ++DG + A++ G+ +AL+DA G +S+P+ Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170 Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499 G I++G+V D I + D++ ED D V + +G Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYKEDSRADTDMNVVMSGNG 209 >gi|89892944|ref|YP_516431.1| hypothetical protein DSY0198 [Desulfitobacterium hafniense Y51] gi|219666211|ref|YP_002456646.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2] gi|89332392|dbj|BAE81987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536471|gb|ACL18210.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2] Length = 128 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V I +G V + +FGAFV GLVHIS+++ V D +KE D V VK++ D Sbjct: 5 VGTIVEGVVTGITNFGAFVELPEKVTGLVHISEVADAYVKDVRDYLKEQDRVKVKVIHVD 64 Query: 679 DRGKIKLSMK 688 ++GKI LS+K Sbjct: 65 EKGKIGLSIK 74 >gi|170694794|ref|ZP_02885945.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M] gi|170140425|gb|EDT08602.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M] Length = 783 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 RE + ++D+ + +G V V FGAF+ +DGLVH+S +ST+ + +VVK Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 G V VK+L+ D R +I L+M++ D+ Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729 >gi|168205615|ref|ZP_02631620.1| ribosomal protein S1 family [Clostridium perfringens E str. JGS1987] gi|170662936|gb|EDT15619.1| ribosomal protein S1 family [Clostridium perfringens E str. JGS1987] Length = 378 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|167039140|ref|YP_001662125.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp. X514] gi|300913270|ref|ZP_07130587.1| Tex-like protein [Thermoanaerobacter sp. X561] gi|307723716|ref|YP_003903467.1| Tex-like protein [Thermoanaerobacter sp. X513] gi|166853380|gb|ABY91789.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514] gi|300889955|gb|EFK85100.1| Tex-like protein [Thermoanaerobacter sp. X561] gi|307580777|gb|ADN54176.1| Tex-like protein protein-like protein [Thermoanaerobacter sp. X513] Length = 712 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V DFG FV DGLVHIS++S + DVV GD V V++L D +R +I Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 707 Query: 684 KLSMK 688 LSMK Sbjct: 708 SLSMK 712 >gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member (exos-4.1) [Caenorhabditis elegans] gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName: Full=Ribosomal RNA-processing protein 41 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 240 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R+I+ ++GL + GS G+T+ + V G E + S + Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKS---SKRIEDKC 65 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431 + Y+ + E R+ RL +A V+ T FP + L I E+ + Sbjct: 66 AIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVI-LTEAFPRSQLDIFCEVIQ 124 Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477 DGS+ A V +SLAL DAG+P+ K +A A V DG + L+ Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-KGIASAATCGVVDGKPIVDLT 169 >gi|182623946|ref|ZP_02951734.1| ribosomal protein S1 family [Clostridium perfringens D str. JGS1721] gi|177910839|gb|EDT73193.1| ribosomal protein S1 family [Clostridium perfringens D str. JGS1721] Length = 378 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|182419861|ref|ZP_02951101.1| protein tex [Clostridium butyricum 5521] gi|237666425|ref|ZP_04526410.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376409|gb|EDT73991.1| protein tex [Clostridium butyricum 5521] gi|237657624|gb|EEP55179.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 723 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVH SQ++ V D+VK GD V V +L+ D+ R +I Sbjct: 653 GTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVKVSILEVDEKRKRI 712 Query: 684 KLSMKVVDQN 693 L+MK + ++ Sbjct: 713 SLTMKDIKES 722 >gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor] gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor] Length = 400 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 255 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 313 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 314 RERGRVSLSTKKLEPTPG 331 >gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl] Length = 520 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 +G+V + +G FV RDGLVHIS++S R+ S+VV+ GDT VWVK ++ + R Sbjct: 108 EGKVTSIALYGVFVDIGVGRDGLVHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEAR- 166 Query: 682 KIKLSMK 688 +I L+M+ Sbjct: 167 RISLTMR 173 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +G + FGAF +DGL+H+S+L+ RV K D VK G+ K+L+ D Sbjct: 209 VGDVVEGVITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGERYQFKILEID 268 Query: 679 -DRGKIKLSMK 688 + +I LS++ Sbjct: 269 GEAARISLSLR 279 Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E +I +G V + FGAFV RDGLVHIS L+ RV K DVVK GD V VK+L Sbjct: 291 ETGQILEGTVSGIAPFGAFVDIGVGRDGLVHISALAPHRVEKVEDVVKVGDKVKVKVLGV 350 Query: 678 DDRGK-IKLSMKVVDQN 693 D + K I L+M++ ++ Sbjct: 351 DQQSKRISLTMRLEEEQ 367 >gi|15612640|ref|NP_240943.1| hypothetical protein BH0077 [Bacillus halodurans C-125] gi|10172689|dbj|BAB03796.1| BH0077 [Bacillus halodurans C-125] Length = 137 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV G GLVHIS+++ V ++++ G V VK+L+ Sbjct: 4 EVGSKLQGKVTGITKFGAFVELPGGSTGLVHISEVADHYVKDINELLTVGQEVQVKVLNV 63 Query: 678 DDRGKIKLSM-KVVDQ 692 + GKI LS+ K +DQ Sbjct: 64 ESDGKIGLSIRKALDQ 79 >gi|266622707|ref|ZP_06115642.1| protein YhgF [Clostridium hathewayi DSM 13479] gi|288865544|gb|EFC97842.1| protein YhgF [Clostridium hathewayi DSM 13479] Length = 713 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V V+DFGAFV +DGLVHISQ+S + + + V GD V VK++ D + Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSEKFIKHPLEAVSVGDIVEVKVISVDVAK 704 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 705 KRIALTMKL 713 >gi|269102376|ref|ZP_06155073.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae CIP 102761] gi|268162274|gb|EEZ40770.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae CIP 102761] Length = 556 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ S+ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD DR ++ L +K Sbjct: 239 DEINVKVLKFDRDRTRVSLGLK 260 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRG 681 G++ + DFG F+ G DGLVH+S +S VA V K+GD + +L D +R Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISW-NVAGEEAVRDFKKGDEISAVVLAVDAERE 427 Query: 682 KIKLSMKVVDQN 693 +I L +K ++++ Sbjct: 428 RISLGIKQIEED 439 >gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665] gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665] Length = 485 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ Sbjct: 206 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 264 Query: 678 D-DRGKIKLSMKVVDQN 693 D DR ++ LS+K ++ Sbjct: 265 DMDRERVSLSLKATQED 281 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L++ + VV D ++VK++D D Sbjct: 292 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 351 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 352 LERRRISLSLKQANE 366 >gi|120602043|ref|YP_966443.1| RNA-binding S1 domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562272|gb|ABM28016.1| RNA binding S1 domain protein [Desulfovibrio vulgaris DP4] Length = 723 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V V FGAFV RDGLVH+SQL+ V ++VV G V V++LD D R +I Sbjct: 653 GIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERI 712 Query: 684 KLSMKVVDQN 693 L++K V Q Sbjct: 713 NLTLKGVPQQ 722 >gi|113461119|ref|YP_719187.1| 30S ribosomal protein S1 [Haemophilus somnus 129PT] gi|112823162|gb|ABI25251.1| SSU ribosomal protein S1P [Haemophilus somnus 129PT] Length = 547 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREEILANLAEGSEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV ++V GD + VK+L FD D+ ++ L +K + Q+ Sbjct: 223 MAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQD 265 Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 V+ G V++ D+ TVK+ SL + ++ +I + VN G+V + Sbjct: 228 VKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNL 287 Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D+G FV +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 288 TDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRRISLGLK 347 Query: 689 VVDQN 693 N Sbjct: 348 QCKPN 352 >gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073] gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073] Length = 250 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 35/209 (16%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R +GR +R ++ + L+ GS+L GDT+ I T+ +E+ L T + Sbjct: 2 LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATV----EEKVPPFLKNTGK 57 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA----------RRAIHPVLPQTAQFPY 421 Y+ LP +T E + RE+ GRL R++ V+ + Sbjct: 58 GWITAEYSLLPRSTKE------RTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGER 111 Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470 T+ + ++ ++DG + A + GS +AL +A +P+ +A +++GLV Sbjct: 112 TIWLDCDVLQADGGTRTAAITGSFVALAEALAGLVAAGGVPAMPLKDFLAAVSVGLV--- 168 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499 DD +IL D+ ED +D V T SG Sbjct: 169 DDELIL-DLDFQEDSHAGVDMNVVMTGSG 196 >gi|52784382|ref|YP_090211.1| YdcI [Bacillus licheniformis ATCC 14580] gi|163119249|ref|YP_077801.2| RNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52346884|gb|AAU39518.1| YdcI [Bacillus licheniformis ATCC 14580] gi|145902755|gb|AAU22163.2| putative RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus licheniformis ATCC 14580] Length = 720 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V DVV GD TVWV+ +D +G Sbjct: 652 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDA-AKG 710 Query: 682 KIKLSM 687 ++ LSM Sbjct: 711 RVSLSM 716 >gi|222099846|ref|YP_002534414.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359] gi|221572236|gb|ACM23048.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359] Length = 120 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + KG+V K++ +GAFV G G +HIS++S + V + D +KEG + K++ Sbjct: 2 KVGEFVKGKVSKIVRYGAFVDIEGGERGFIHISKISKDYVKRIEDYLKEGQEISAKVIGK 61 Query: 678 DDRGKIKLSMKVVDQNT 694 G +LS+K V +NT Sbjct: 62 ARNGGWELSLKDVSENT 78 >gi|196250541|ref|ZP_03149231.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] gi|196209890|gb|EDY04659.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16] Length = 239 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + V D+V GD VWV+ +D +G Sbjct: 170 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDV-AKG 228 Query: 682 KIKLSM 687 +I LSM Sbjct: 229 RISLSM 234 >gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262] gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262] Length = 248 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR+ +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|170717701|ref|YP_001784774.1| 30S ribosomal protein S1 [Haemophilus somnus 2336] gi|168825830|gb|ACA31201.1| ribosomal protein S1 [Haemophilus somnus 2336] Length = 547 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%) Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651 V ++ ++ E E ++E + ++ E +++ KG V + D+GAFV G DGL+HI+ Sbjct: 165 NVVVSRRAVIESENSQEREEILANLAEGSEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222 Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 ++ +RV ++V GD + VK+L FD D+ ++ L +K + Q+ Sbjct: 223 MAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQD 265 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 V+ G V++ D+ TVK+ SL + ++ +I + VN G+V + Sbjct: 228 VKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNL 287 Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D+G FV +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 288 TDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRRISLGLK 347 Query: 689 VVDQN 693 N Sbjct: 348 QCKPN 352 >gi|329297356|ref|ZP_08254692.1| putative transcriptional accessory protein [Plautia stali symbiont] Length = 776 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + V VVK G+ V VK+++ D R Sbjct: 652 VLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVDDPHQVVKAGNIVKVKVMEVDLQR 711 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ +Q Sbjct: 712 KRIALTMRLDEQ 723 >gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120] gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120] Length = 248 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR+S +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D P +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEETPFTKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|169344163|ref|ZP_02865145.1| ribosomal protein S1 family [Clostridium perfringens C str. JGS1495] gi|169297621|gb|EDS79721.1| ribosomal protein S1 family [Clostridium perfringens C str. JGS1495] Length = 378 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|157149853|ref|YP_001450520.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis substr. CH1] gi|157074647|gb|ABV09330.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis substr. CH1] Length = 401 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPAN 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus carboxydivorans Nor1] Length = 655 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683 G+V K+ FGAFV +GLVH+S+L+ RVA +VV+ G TV VK+L D K I Sbjct: 553 GKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKENKRI 612 Query: 684 KLSMKVVDQN 693 LS+ Q+ Sbjct: 613 SLSIAQAQQD 622 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 +I G V ++ DFG FV G DGL+HIS LS RV ++VV GD V V + D Sbjct: 463 GQIVTGTVSRIADFGVFVDLGGV-DGLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDP 521 Query: 680 RGK-IKLSMKVVDQN 693 + K I LS+K V ++ Sbjct: 522 KAKRISLSLKRVQRD 536 >gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864] Length = 252 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 9/184 (4%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR +R I A+VG+ + GS+ +G+T+ I+ G E + L R Sbjct: 14 LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTK-ILATVYGPHEVSRKNKPLH--DR 70 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430 Y AT E + +R + R A + T +P + + I ++ Sbjct: 71 AIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAV-MTQLYPRSQIDIFLQVL 129 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 +SDG + + ++LALMDAG+ + V ++G + D L DI+ ED G D Sbjct: 130 QSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTP----LLDINYIEDSAGGPD 185 Query: 491 FKVA 494 VA Sbjct: 186 LTVA 189 >gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378] gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023] Length = 248 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR+ +R+I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGGTVL-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D + T SG Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196 >gi|282862064|ref|ZP_06271127.1| RNA binding S1 domain protein [Streptomyces sp. ACTE] gi|282563089|gb|EFB68628.1| RNA binding S1 domain protein [Streptomyces sp. ACTE] Length = 504 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|182419749|ref|ZP_02950989.1| putative 30S ribosomal protein [Clostridium butyricum 5521] gi|237666935|ref|ZP_04526920.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376297|gb|EDT73879.1| putative 30S ribosomal protein [Clostridium butyricum 5521] gi|237658134|gb|EEP55689.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 383 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 618 EVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 E+N+ + +G+VV++ FGAFV +GLVHI++++ E +AK SDV++ V VK+L Sbjct: 278 EINEGDVIEGKVVRLTSFGAFVELFDGVEGLVHITEITDENIAKPSDVLQLNQKVKVKVL 337 Query: 676 DFDDRGKIKLSMKVVD 691 D K K+S+ + D Sbjct: 338 SIDRESK-KMSLSIKD 352 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684 G V K++ FGAFV G +GL+H+S LS ERV K ++VKEGD V V + D+ K + Sbjct: 202 GVVKKLVKFGAFVDIGGV-EGLIHLSDLSWERVNKPEEIVKEGDKVEV-FIGSVDKEKER 259 Query: 685 LSM 687 LS+ Sbjct: 260 LSL 262 >gi|326576450|gb|EGE26358.1| RNA binding protein S1 [Moraxella catarrhalis CO72] Length = 788 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS V +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58] gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58] Length = 485 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++L+ Sbjct: 206 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 264 Query: 678 D-DRGKIKLSMKVVDQN 693 D DR ++ LS+K ++ Sbjct: 265 DMDRERVSLSLKATQED 281 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L++ + VV D ++VK++D D Sbjct: 292 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 351 Query: 679 -DRGKIKLSMKVVDQ 692 +R +I LS+K ++ Sbjct: 352 LERRRISLSLKQANE 366 >gi|167525162|ref|XP_001746916.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774696|gb|EDQ88323.1| predicted protein [Monosiga brevicollis MX1] Length = 375 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674 +P++ ++Y G V V FG FV G +GL+H+SQLS RV V++ G V+VK+ Sbjct: 54 LPKLYRVYLGVVKSVKPFGGFVELDGFTHEGLLHVSQLSKFRVDDVESVLQVGQQVFVKV 113 Query: 675 LDFDD--RGKIKLSMKVVDQNTG 695 ++ + +I LS+K VDQ G Sbjct: 114 IEVGEPPEHRIALSIKTVDQRNG 136 >gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory protein [Janthinobacterium sp. Marseille] gi|151281145|gb|ABR89555.1| Tex transcriptional accessory protein [Janthinobacterium sp. Marseille] Length = 782 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V V FGAFV +DGLVHIS LS V VVK G V VK+L+ D+ R Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDEKR 724 Query: 681 GKIKLSMKVVD 691 +I L+M++ D Sbjct: 725 KRIALTMRLSD 735 >gi|114762771|ref|ZP_01442205.1| S1 RNA binding domain protein [Pelagibaca bermudensis HTCC2601] gi|114544681|gb|EAU47687.1| S1 RNA binding domain protein [Roseovarius sp. HTCC2601] Length = 771 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E + ITD+ + +G V V FGAFV +DGLVH+SQL+ V +VVK G Sbjct: 637 EGVEQITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 695 Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 D V V++ + D R +I LSM+ GKP Sbjct: 696 DVVRVRVTEVDVPRKRIGLSMR--KDGGGKP 724 >gi|94676844|ref|YP_588705.1| 30S ribosomal protein S1 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219994|gb|ABF14153.1| ribosomal protein S1 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 558 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD +R + Sbjct: 196 KGLVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVTIGDEIIVKILKFDRERTR 254 Query: 683 IKLSMKVVDQN 693 + L +K + Q+ Sbjct: 255 VSLGLKQLSQD 265 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE N G+V + D+G FV +GLVH+S++ T + S VV D V + +L Sbjct: 275 PE-NSRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNVNDIVEIMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCQAN 352 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHIS----QLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 +G++ + DFG F+ G DGLVH+S LS E A+ K+G+ + +L D Sbjct: 368 EGKIKSITDFGIFIGLEGGIDGLVHLSDIYWNLSGEEAARE---YKKGEEIAAVVLQVDA 424 Query: 679 DRGKIKLSMKVVDQN 693 +R +I L +K +DQ+ Sbjct: 425 ERERISLGIKQLDQD 439 >gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] Length = 453 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + + GS + GDT+ I T+ +E+ L +++ Sbjct: 2 IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATI----EEKVPFFLKDSEK 57 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT +R + + G RL R++ V+ ++ I Sbjct: 58 GWVTAEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDC 117 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A L+ G+ PI + +A +++G++ + + + Sbjct: 118 DVIQADGGTRTASITGAFVALKLAVEKLLQQGLLTENPIKEYLAAVSVGMLSNDN---CI 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQA 524 +D++ +ED +D + T++G I + G N M+ +QA Sbjct: 175 TDLNYEEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQA 226 >gi|301063982|ref|ZP_07204447.1| ribosomal protein S1 [delta proteobacterium NaphS2] gi|300441893|gb|EFK06193.1| ribosomal protein S1 [delta proteobacterium NaphS2] Length = 599 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Query: 595 IASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I S A +EA R ++ T + E + + KG V + D+G F+ G DGLVHI+ +S Sbjct: 175 IVLSRRAILEAERAALKEETLKIIEEDAVLKGVVKNITDYGLFIDLGGL-DGLVHITDMS 233 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 RV S++ + GD + VK+L+FD +R ++ L +K Sbjct: 234 WGRVGHPSEMHRVGDEIQVKVLNFDRERERVSLGIK 269 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+VV + D+GAFV +GL+H+S++S T ++ S ++ GDTV +L+ D R + Sbjct: 291 GRVVSLTDYGAFVEVEQGVEGLIHVSEMSWTRKIRHPSQILNVGDTVDAIVLNMDVQRKR 350 Query: 683 IKLSMKVVDQN 693 I L MK V+ N Sbjct: 351 ISLGMKQVEPN 361 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +G++ + DFG F+ DGLVHIS +S T+R+ S++ K+G V +L+ D Sbjct: 377 EGKIKNITDFGTFIGIDEGIDGLVHISDMSWTKRIKHPSELYKKGQEVRAVVLNID 432 Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683 G V + DFG F+ +GLVH+S++S ++ + D + K+++ R KI Sbjct: 465 GTVTNITDFGLFIELEEGIEGLVHVSEISGDKRGNPLSRFQIDDVIQTKVINVSRREKKI 524 Query: 684 KLSMKVVDQNTGKPI 698 LS++ ++Q + K I Sbjct: 525 GLSIRKLEQTSEKEI 539 >gi|119471392|ref|ZP_01613864.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Alteromonadales bacterium TW-7] gi|119445668|gb|EAW26952.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Alteromonadales bacterium TW-7] Length = 774 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V +FGAFV +DGLVHIS ++ + ++ +VVK GD V VK+++ D R Sbjct: 651 ILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEVDASR 710 Query: 681 GKIKLSMKVVDQ--NTGKP 697 +I +M++ D+ + KP Sbjct: 711 KRISFTMRLNDEIDTSNKP 729 >gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi] Length = 246 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ +R+DGR S+ +R + ++G + S ++ ++ G RE + S Sbjct: 3 LLSDQGLRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPRE-PRGGSS 61 Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH-----PVLPQTAQFP 420 + + + +++ F A R +R+ G R A H QT +P Sbjct: 62 GDNSNKEEAILNVQFSSAAFSTAER----KQRQRGDKRSLEMAAHLKQTFAACIQTELYP 117 Query: 421 YT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479 + + I E+ ++DG A+V ++LAL+ AG+P+ V + L+K+ L DI Sbjct: 118 RSQIDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKE----TPLLDI 173 Query: 480 SGDEDHLG 487 S E +LG Sbjct: 174 SMLESNLG 181 >gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM 10507] gi|225037080|gb|EEG47326.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM 10507] Length = 301 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%) Query: 603 IEAAREMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I +ARE+++ D EV + +G V + +GAF+ GLVHISQ+S Sbjct: 171 ILSAREILKEKADEERKAKISNVEVGLVTEGIVESLQPYGAFIDLGNGLSGLVHISQISE 230 Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698 +R+ S V+ GD V VK++ D GK+ LSMK + K I Sbjct: 231 KRIKSCSQVLAVGDKVKVKVIAIKD-GKLSLSMKALADVAAKEI 273 >gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group] Length = 217 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 69 IGSVVLGTVESLKPYGAFIDIGGI-NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 127 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 128 RERGRVSLSTKKLEPTPG 145 >gi|156081953|ref|XP_001608469.1| RNA helicase [Plasmodium vivax SaI-1] gi|148801040|gb|EDL42445.1| RNA helicase, putative [Plasmodium vivax] Length = 1218 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%) Query: 619 VNKIYKGQVVKVMDFGAFVHF----CGARDGLVHISQL--STERVAKTSDVVKEGDTVWV 672 VN I+ G V KVMDFG FV F G ++GLVH + + + +RVA + + G V V Sbjct: 239 VNNIFSGTVSKVMDFGIFVSFRSEPGGYKEGLVHCTDILPNRKRVANMREQFQRGMKVKV 298 Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699 K+ KI L+M VDQ TGK +V Sbjct: 299 KVKALFGE-KISLNMAEVDQKTGKNLV 324 >gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680] gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680] Length = 501 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|326577921|gb|EGE27785.1| RNA binding protein S1 [Moraxella catarrhalis O35E] Length = 788 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS V +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|326561800|gb|EGE12135.1| RNA binding protein S1 [Moraxella catarrhalis 7169] gi|326564763|gb|EGE14976.1| RNA binding protein S1 [Moraxella catarrhalis 12P80B1] gi|326568974|gb|EGE19043.1| RNA binding protein S1 [Moraxella catarrhalis BC1] Length = 788 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ +V +G V V FG FV +DGLVHIS+LS V +DVVK Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705 Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688 D V V+++ D+ RG+I SMK Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728 >gi|302802588|ref|XP_002983048.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii] gi|300149201|gb|EFJ15857.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii] Length = 163 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 16/100 (16%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD----------- 662 ++PE+ I +G+V V FG FV G R GLVH+SQ+S V + D Sbjct: 8 ELPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAA 67 Query: 663 VVKEGDTVWVKLL----DFDDRGKIKLSMKVVDQNTGKPI 698 + +G+ +WVK++ + D KI SMK+V Q G+ + Sbjct: 68 IAGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107 >gi|222528668|ref|YP_002572550.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455515|gb|ACM59777.1| RNA binding S1 domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 120 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 44/73 (60%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V + FGAFV + GLVHIS+++ E V +KE TV VK+++ + G Sbjct: 8 ILEGIVKGITQFGAFVELPSGKVGLVHISEVADEYVEDIKKYLKENQTVKVKVINVKEDG 67 Query: 682 KIKLSMKVVDQNT 694 KI LS+K V++ T Sbjct: 68 KISLSIKRVNETT 80 >gi|319648686|ref|ZP_08002897.1| YdcI protein [Bacillus sp. BT1B_CT2] gi|317389105|gb|EFV69921.1| YdcI protein [Bacillus sp. BT1B_CT2] Length = 720 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V DVV GD TVWV+ +D +G Sbjct: 652 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDA-AKG 710 Query: 682 KIKLSM 687 ++ LSM Sbjct: 711 RVSLSM 716 >gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays] gi|194703708|gb|ACF85938.1| unknown [Zea mays] gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays] gi|223948553|gb|ACN28360.1| unknown [Zea mays] Length = 401 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 255 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 313 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 314 RERGRVSLSTKKLEPTPG 331 >gi|134096173|ref|YP_001101248.1| putative polyribonucleotide nucleotidyltransferase [Herminiimonas arsenicoxydans] gi|133740076|emb|CAL63127.1| putative transcription accessory protein TEX [Herminiimonas arsenicoxydans] Length = 780 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V V FGAFV +DGLVHIS LS V VVK G V VK+L+ D+ R Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDEKR 724 Query: 681 GKIKLSMKVVD 691 +I L+M++ D Sbjct: 725 KRIALTMRLSD 735 >gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa Length = 239 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R GR ++ +R I + GS L GDT+ I V+ + L G + Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP +TGE ++ A ++ G RL R++ L + TL I + Sbjct: 59 WLTAEYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ G+++AL+DA G P+ + VA +++G+ + + + Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQG----VPVL 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V TD+G Sbjct: 175 DLDYLEDSAAETDLNVVXTDAG 196 >gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR+ +R I L GS L G+T+ I ++ T+ + G R Sbjct: 1 MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56 Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G + R + RL RA+ V+ A T+ + Sbjct: 57 GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A+ +D VP +K PV A ++G++++G + L Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEQVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 + I ED +D + T SG Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196 >gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis] gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis] Length = 249 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 38/198 (19%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G E Sbjct: 6 LLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV-YGPHE------- 57 Query: 366 LSGTQRNDFMMH--------YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417 + G++ M+H Y+ +TGE RR G + + +H L QT Sbjct: 58 IRGSRSK--MLHDRCVINCQYSMATFSTGE------RKRRPHGDRKSSEMTLH--LKQTF 107 Query: 418 Q-------FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 + +P + + I +I ++DG + V ++LA++DAG+P+ V + G ++D Sbjct: 108 EAAILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIED 167 Query: 470 GDDFIILSDISGDEDHLG 487 L+D+S E+ G Sbjct: 168 ----TPLADLSYVEEATG 181 >gi|257898849|ref|ZP_05678502.1| ribosomal protein S1 [Enterococcus faecium Com15] gi|257836761|gb|EEV61835.1| ribosomal protein S1 [Enterococcus faecium Com15] Length = 417 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 272 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 273 ERVSLSIK 280 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 296 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 356 PEEHRIALSIKALEE 370 >gi|238916861|ref|YP_002930378.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750] gi|238872221|gb|ACR71931.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750] Length = 355 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + KG V ++ DFGAFV D L+H+SQ+S +R+ K SD + G + K++D + Sbjct: 268 VGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQEIEAKVVDLN 327 Query: 679 DRG-KIKLSMKVV 690 + KI LS+K + Sbjct: 328 EADKKISLSIKAL 340 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV--WVKLLDFDDRG 681 +G V V DFGAF+ G DGL+HIS++S R V K GD+V ++K ++ D Sbjct: 190 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRTENPKKVYKIGDSVKCFIKEINGD--- 245 Query: 682 KIKLSMKVVDQN 693 KI LS+K D N Sbjct: 246 KIALSVKYPDLN 257 >gi|227551165|ref|ZP_03981214.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330] gi|257887717|ref|ZP_05667370.1| ribosomal protein S1 [Enterococcus faecium 1,141,733] gi|257896211|ref|ZP_05675864.1| ribosomal protein S1 [Enterococcus faecium Com12] gi|227179727|gb|EEI60699.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330] gi|257823771|gb|EEV50703.1| ribosomal protein S1 [Enterococcus faecium 1,141,733] gi|257832776|gb|EEV59197.1| ribosomal protein S1 [Enterococcus faecium Com12] Length = 417 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 272 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 273 ERVSLSIK 280 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 296 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 356 PEEHRIALSIKALEE 370 >gi|195978262|ref|YP_002123506.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974967|gb|ACG62493.1| SSU ribosomal protein Rps1 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 400 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV D++ G V VK+LD D Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDMLTVGQEVTVKVLDVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA++ + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262 >gi|262282821|ref|ZP_06060588.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA] gi|262261073|gb|EEY79772.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA] Length = 401 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + +G V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ + Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPAN 340 Query: 682 -KIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|251782575|ref|YP_002996877.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391204|dbj|BAH81663.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127399|gb|ADX24696.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 401 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+E + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKEARTEVFSKLSEGAVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262 >gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Syntrophobotulus glycolicus DSM 8271] gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Syntrophobotulus glycolicus DSM 8271] Length = 662 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 + +G V ++ DFGAF+ G DGL+H+S ++ RV+ SD+V GD V V+++ D + Sbjct: 472 VVQGVVRRLTDFGAFIDLGGV-DGLLHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSK 530 Query: 681 GKIKLSMKVVDQN 693 G+I L +K + N Sbjct: 531 GRISLGLKQLKTN 543 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + +VV++ FGAFV D L+HISQL+ RV K +VVK GD + K+++ Sbjct: 554 VGSTVQAKVVRIAVFGAFVQLEDGIDALIHISQLADRRVGKVDEVVKIGDVIEAKIIECK 613 Query: 679 -DRGKIKLSMK 688 + +I LS++ Sbjct: 614 PEEKRISLSIR 624 >gi|322411908|gb|EFY02816.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 401 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 EAA+E + + G V ++ FGAF+ G DGLVH+++LS ER V Sbjct: 178 EAAKEARTEVFSKLSEGAVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236 Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688 V G+ V VK+L D+ G++ LS+K Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262 >gi|289422374|ref|ZP_06424220.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L] gi|289157209|gb|EFD05828.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L] Length = 412 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE EAA+ + + EV + G+V +M +GAF+ G +GL HI+ LS RVA Sbjct: 207 AEREAAKIAREELFNSLEVGEKRTGKVTNIMSYGAFIDLGGV-EGLAHINNLSWTRVADV 265 Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698 VV GD V V + D + K I LS+K D++ K I Sbjct: 266 ESVVSVGDEVDVYIQDINPENKRIALSLKNPDEDPWKKI 304 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 +V++++D GAFV + + I +LS +RV K DVV GD V ++ F+ D ++ Sbjct: 316 AKVLRIIDKGAFVEVKPGVEAYLPIGELSEDRVNKVEDVVNIGDEVKAAIIKFNPDTKRM 375 Query: 684 KLSMK 688 LS+K Sbjct: 376 MLSIK 380 >gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC 33331] Length = 503 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 272 RERVSLSLKATQED 285 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ D ++VK++D Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354 Query: 678 D-DRGKIKLSMKVVDQNTG 695 D +R +I LS+K ++ G Sbjct: 355 DLERRRISLSLKQANEAFG 373 >gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] Length = 243 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE--DEQYVDSLSGT 369 +R+DGR E +R + ++G+L R GS+ +G+T+A+ + G + D+ + Sbjct: 9 LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASIN-GPHQAGDKAKIKH---- 63 Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428 R Y+ +T E +R I +L R + T +P + + I + Sbjct: 64 DRVHINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAI-LTDLYPKSQIDIHVQ 122 Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467 I ++DG + A + ++LALMDAGVP+ + LV Sbjct: 123 ILQADGGNYSACINAATLALMDAGVPMKDFICSCTASLV 161 >gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group] gi|113548409|dbj|BAF11852.1| Os03g0315800 [Oryza sativa Japonica Group] Length = 390 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RVA S V++ GDT+ V +L D Sbjct: 242 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 300 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 301 RERGRVSLSTKKLEPTPG 318 >gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231] gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231] Length = 563 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V + D+GAFV G DGL+HI+ ++ RV S+VV GD V VK+L FD + Sbjct: 193 QVLKGIVKNLTDYGAFVDLGGI-DGLLHITDMAWRRVKHPSEVVNVGDEVDVKVLKFDRE 251 Query: 680 RGKIKLSMKVVDQNTGKPI 698 R ++ L +K + ++ + I Sbjct: 252 RNRVSLGLKQLGEDPWENI 270 Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE ++++ G+V + D+G+FV +GLVH+S++ T + + VV G+ V V +L Sbjct: 275 PESSRVF-GRVTNITDYGSFVEIEEGVEGLVHVSEMDWTNKNVNPAKVVTIGEEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R ++ L MK N Sbjct: 334 DIDEERRRVSLGMKQCQAN 352 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682 GQ+ + DFG FV G DGLVH+S LS + + K+G+ V +L D +R + Sbjct: 369 GQIKSITDFGIFVGLAGGIDGLVHLSDLSWNITGEEAVRRYKKGEEVETVVLSVDPERER 428 Query: 683 IKLSMKVVDQN 693 I L +K ++Q+ Sbjct: 429 ISLGIKQLEQD 439 >gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] Length = 247 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 25/209 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R I+ Q+G+ R GS+ + +G+T+ I+ G RE S+SG Sbjct: 12 LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTK-IIAAVYGPRE-----ISVSGQSI 65 Query: 372 ND-FMMHYNFLPCATGEVSRMGAPSRREIGH------GRLARRAIHPVLPQTAQFPYT-L 423 D ++ F + R P ++ G L ++A + QT +P + + Sbjct: 66 FDRAIVKCEFATSSFSTTER--KPQQKTKGDRATTEISNLVKQAFESTI-QTHLYPRSQI 122 Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI---S 480 I ++ +SDG A + S+LAL+DAG+ + V ++ + DG + L+ I S Sbjct: 123 NIYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCI-DGVAVLDLNHIEERS 181 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKI 509 G D L + ++ G+ ++ MD K+ Sbjct: 182 GGPDCLLSIQPQIG----GVISLNMDSKV 206 >gi|222153157|ref|YP_002562334.1| 30S ribosomal protein S1 [Streptococcus uberis 0140J] gi|222113970|emb|CAR42251.1| putative 30S ribosomal protein S1 [Streptococcus uberis 0140J] Length = 405 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + G V ++ FGAF+ G DGLVH+++LS ER VV GD V VK+L D+ Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLSIDEEA 254 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 255 GRVSLSLK 262 >gi|168334506|ref|ZP_02692672.1| 30S ribosomal protein S1 [Epulopiscium sp. 'N.t. morphotype B'] Length = 373 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 Y G++ K+M++GAFV G +GL+H S LS R+ D+V+EG V V ++ D + G Sbjct: 206 YIGKITKLMNYGAFVDLDGI-EGLIHNSDLSWSRIKHPKDIVQEGQEVEVSIISIDRENG 264 Query: 682 KIKLSMKVVDQN 693 KI L++K ++ + Sbjct: 265 KIALALKDINND 276 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E ++ KG V + FGAFV +GL+HISQ+ST R K DV+ G V VK++ Sbjct: 286 EEGQLVKGIVTRFALFGAFVRIADGVEGLIHISQISTPRPTKPQDVLTSGQEVEVKIIKI 345 Query: 678 DDRGK-IKLSM 687 D K I LS+ Sbjct: 346 DKAEKRISLSL 356 >gi|219667445|ref|YP_002457880.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2] gi|219537705|gb|ACL19444.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2] Length = 721 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V ++DFGAF+ DGLVHISQ+S + + +V+ GD V V++L D R Sbjct: 644 ILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGIDTAR 703 Query: 681 GKIKLSMK 688 ++ LSMK Sbjct: 704 ERVSLSMK 711 >gi|152966892|ref|YP_001362676.1| 30S ribosomal protein S1 [Kineococcus radiotolerans SRS30216] gi|151361409|gb|ABS04412.1| RNA binding S1 domain protein [Kineococcus radiotolerans SRS30216] Length = 505 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 272 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 273 RERVSLSLKATQED 286 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + ++ G+V K++ FGAFV +GLVHIS+L+ V VV+ ++VK++D D Sbjct: 297 IGQVVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPEQVVQVNSDIFVKVIDID 356 Query: 679 -DRGKIKLSMK 688 +R +I LS+K Sbjct: 357 LERRRISLSLK 367 >gi|224475651|ref|YP_002633257.1| hypothetical protein Sca_0159 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420258|emb|CAL27072.1| putative RNA binding protein with S1 domain [Staphylococcus carnosus subsp. carnosus TM300] Length = 136 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 41/71 (57%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV KG+V + FGAFV + GLVHIS+++ + V + + GD V VK+L Sbjct: 4 EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADKYVENVEEHLSVGDEVEVKVLSI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 ADDGKISLSIK 74 >gi|166031537|ref|ZP_02234366.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC 27755] gi|166028514|gb|EDR47271.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC 27755] Length = 717 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679 I KG V V+DFGAFV +DGLVHISQ++ ++ K +VV GD V VK++ D Sbjct: 647 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTNKKFIKHPLEVVSVGDIVDVKVMSVDLK 706 Query: 680 RGKIKLSMKVV 690 + +I+L+MK V Sbjct: 707 KKRIQLTMKDV 717 >gi|18311132|ref|NP_563066.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13] gi|18145815|dbj|BAB81856.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13] Length = 378 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G+V + GAFV +GLVHIS+++ E +AK SD+++ G V VK+L+ Sbjct: 277 KVGNVVLGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336 Query: 678 DDRGKIKLSMKVVD 691 DD K K+S+ + D Sbjct: 337 DDENK-KMSLSIKD 349 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+V ++ FGAFV G +GLVH+S +S RV K +VV GD V V + + D DR + Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257 Query: 683 IKLSMKVVDQN 693 I LS+K V +N Sbjct: 258 IALSLKDVIKN 268 >gi|295698418|ref|YP_003603073.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA] gi|291157307|gb|ADD79752.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA] Length = 554 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G V + D+GAF+ G DGL+HI+ +S +RV S++VK GD + VK+L FD D+ ++ Sbjct: 199 GIVKNLTDYGAFIDLGGV-DGLLHITDISWKRVKHPSEIVKIGDNIKVKVLKFDKDKSRV 257 Query: 684 KLSMK 688 L +K Sbjct: 258 SLGLK 262 Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD-DRGK 682 G++ + DFG F+ G DGLVH S +S + + V K+GD + +L D +R + Sbjct: 371 GKIKSITDFGIFIELNGGIDGLVHSSDVSWDNSYEEESVKYKKGDLISAVVLQVDFERER 430 Query: 683 IKLSMKVVDQN 693 I L +K + ++ Sbjct: 431 ISLGIKQLSED 441 >gi|294931469|ref|XP_002779890.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC 50983] gi|239889608|gb|EER11685.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC 50983] Length = 1239 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 9/87 (10%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVA-----KTSDVVKEGDT 669 E+ I++G V +VM++G FV F G ++GLVH+ ++ A SD+VK + Sbjct: 264 ELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVHVGEILPASSAGRSRMSASDLVKRNQS 323 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V+VK++ KI LSM+ DQ TG+ Sbjct: 324 VYVKIVGLAG-SKISLSMREADQKTGE 349 >gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243] gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1] gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239] gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16] gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243] gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1] gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239] gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16] Length = 489 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 ++ +I G+V K++ FG FV +GLVH+S+L+T + V K GD ++VK++D Sbjct: 293 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDI 352 Query: 678 D-DRGKIKLSMK 688 D +R +I LS+K Sbjct: 353 DLERRRISLSLK 364 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ G V +++FGAFV G DGLVH+S+LS + + S+VV+ G V V++LD D D Sbjct: 211 QVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 269 Query: 680 RGKIKLSMKVVDQN 693 R ++ LS+K ++ Sbjct: 270 RERVSLSLKATQED 283 >gi|314935980|ref|ZP_07843330.1| S1 RNA binding domain protein [Staphylococcus hominis subsp. hominis C80] gi|313655986|gb|EFS19728.1| S1 RNA binding domain protein [Staphylococcus hominis subsp. hominis C80] Length = 715 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 I SI D+ + K+ G V V+DFGAFV +DGLVHIS+LS + V D++ GD Sbjct: 633 ILSIEDLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDI 691 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693 V V +L+ D+ K K+++ +++ N Sbjct: 692 VDVWILNI-DKNKEKVALTMINPN 714 >gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium HF0200_09I09] Length = 677 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 AA E + + EV + G V KV+ FGAF G +GL H+S+L R+ +++ Sbjct: 353 AAPEQWQDLISQYEVGDVVPGIVTKVVAFGAFTRLPGPVEGLAHVSELVDRRINSPEEIL 412 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694 EGD V +K++ + DR ++ LS++ Q Sbjct: 413 IEGDVVPLKIVRIEHDRHRLGLSLREARQEA 443 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG V + +FG FV GA DGL H+S+LS +R A + + G + V ++ D D Sbjct: 284 EVRKGTVTSIRNFGVFVDLGGA-DGLAHLSELSWDRNADPEQLFQVGQDIDVYIMRIDRD 342 Query: 680 RGKIKLSMK 688 KI LS++ Sbjct: 343 SKKIALSVR 351 >gi|294868136|ref|XP_002765399.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC 50983] gi|239865418|gb|EEQ98116.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC 50983] Length = 1016 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 9/87 (10%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVA-----KTSDVVKEGDT 669 E+ I++G V +VM++G FV F G ++GLVH+ ++ A SD+VK + Sbjct: 120 ELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVHVGEILPASSAGRSRMSASDLVKRNQS 179 Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696 V+VK++ KI LSM+ DQ TG+ Sbjct: 180 VYVKIVGLAG-SKISLSMREADQKTGE 205 >gi|254487164|ref|ZP_05100369.1| transcriptional accessory protein [Roseobacter sp. GAI101] gi|214044033|gb|EEB84671.1| transcriptional accessory protein [Roseobacter sp. GAI101] Length = 802 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 21/145 (14%) Query: 564 RNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIE------------- 604 R ++ G+ +R I+ + A +DD + LAE+E Sbjct: 604 RKIVQACGRDVRAIMGDSAALAGLNAEQFVDDSFGLPTVRDILAELEKPGRDPRPAFKTA 663 Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664 + E I SITD+ + +G V V FGAFV +DGLVH+SQL+ V +VV Sbjct: 664 SFAEGIDSITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVV 722 Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688 K GD V V++ + D R +I L+M+ Sbjct: 723 KAGDVVRVRVTEVDVPRKRIGLTMR 747 >gi|166031130|ref|ZP_02233959.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC 27755] gi|166028977|gb|EDR47734.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + G V + ++GAFV GLVH+SQ+S +R+ DV+ GD V VK++ Sbjct: 120 KVGSVLTGTVESLQNYGAFVRLEDGLSGLVHVSQISQKRIKFPKDVLNVGDEVQVKVIGV 179 Query: 678 DDRGKIKLSMK 688 D GKI LSMK Sbjct: 180 KD-GKISLSMK 189 >gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] Length = 253 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R ++ ++ GS L GDT+ I TL +E+ + G + Sbjct: 1 MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATL----EERVPPFMRGGGK 56 Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT S G R + RL RA+ V+ A T+ + Sbjct: 57 GWITAEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++DA +P++ +A ++G+V G++ ++ Sbjct: 117 DVIQADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLPLNDFLAATSVGVV--GEEAVL- 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D V T G Sbjct: 174 -DLNYKEDSTAIVDMNVVMTGKG 195 >gi|121608029|ref|YP_995836.1| RNA-binding S1 domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552669|gb|ABM56818.1| RNA binding S1 domain protein [Verminephrobacter eiseniae EF01-2] Length = 794 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 ++ ITD+ E + +G V V FGAFV +D LVH+SQL+ + V +VVK G Sbjct: 657 VQDITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDALVHVSQLAHKFVNDAREVVKTGAI 715 Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 V V++L+ D R +I L+MK +D +P Sbjct: 716 VKVRVLEVDLPRKRIALTMK-LDAAPARP 743 >gi|89896725|ref|YP_520212.1| hypothetical protein DSY3979 [Desulfitobacterium hafniense Y51] gi|89336173|dbj|BAE85768.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 721 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I +G V ++DFGAF+ DGLVHISQ+S + + +V+ GD V V++L D R Sbjct: 644 ILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGIDTAR 703 Query: 681 GKIKLSMK 688 ++ LSMK Sbjct: 704 ERVSLSMK 711 >gi|315640571|ref|ZP_07895678.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952] gi|315483678|gb|EFU74167.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952] Length = 404 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 +I + +V +G V ++ FGAFV +GLVHISQ+S + +A +V+ EGDTV Sbjct: 283 NIEEKAQVGATLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDTVQ 342 Query: 672 VKLLDFDDRG-KIKLSMKVV 690 VK+L+ + +I LS+K + Sbjct: 343 VKVLEVNPTDHRIALSIKAL 362 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682 +G V ++ +FGAFV G DGLVH+S++S V K SDV+ GDTV V +L D + Sbjct: 210 EGNVARLTNFGAFVDLGGI-DGLVHVSEISHGHVGKPSDVLAVGDTVNVAVLSIDPTTER 268 Query: 683 IKLSMK 688 I LS+K Sbjct: 269 ISLSIK 274 >gi|206969559|ref|ZP_03230513.1| general stress protein 13 [Bacillus cereus AH1134] gi|218235815|ref|YP_002369692.1| general stress protein 13 [Bacillus cereus B4264] gi|218900051|ref|YP_002448462.1| general stress protein 13 [Bacillus cereus G9842] gi|206735247|gb|EDZ52415.1| general stress protein 13 [Bacillus cereus AH1134] gi|218163772|gb|ACK63764.1| general stress protein 13 [Bacillus cereus B4264] gi|218543520|gb|ACK95914.1| general stress protein 13 [Bacillus cereus G9842] gi|326942665|gb|AEA18561.1| general stress protein 13 [Bacillus thuringiensis serovar chinensis CT-43] Length = 114 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 13 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 73 SLSLKAAKRKQGRILI 88 >gi|77456487|ref|YP_345992.1| RNA binding S1 [Pseudomonas fluorescens Pf0-1] gi|77380490|gb|ABA72003.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens Pf0-1] Length = 774 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + + D+ ++ I +G V V FGAFV +DGLVHIS LS + + + VK Sbjct: 637 QEGVEDLKDL-QLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+++ D R ++ LSM++ D Sbjct: 696 GDVVKVKVMEVDIPRKRVGLSMRMSD 721 >gi|302385380|ref|YP_003821202.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] gi|302196008|gb|ADL03579.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1] Length = 366 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ DFGAFV D L+H+SQ+S E V K +DV+ G + +++DF+ Sbjct: 276 VGNVVSGKVARMTDFGAFVELEPGVDALLHVSQISKEHVDKPADVLAIGQEIEARVVDFN 335 Query: 679 D-RGKIKLSMKVV 690 + KI LS+K + Sbjct: 336 EGDKKISLSIKAL 348 >gi|270292576|ref|ZP_06198787.1| ribosomal protein S1 [Streptococcus sp. M143] gi|293365610|ref|ZP_06612319.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037] gi|307703559|ref|ZP_07640501.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037] gi|315613325|ref|ZP_07888234.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296] gi|322375396|ref|ZP_08049909.1| ribosomal protein S1 [Streptococcus sp. C300] gi|331266202|ref|YP_004325832.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5] gi|270278555|gb|EFA24401.1| ribosomal protein S1 [Streptococcus sp. M143] gi|291315978|gb|EFE56422.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037] gi|307622966|gb|EFO01961.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037] gi|315314560|gb|EFU62603.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296] gi|321279659|gb|EFX56699.1| ribosomal protein S1 [Streptococcus sp. C300] gi|326682874|emb|CBZ00491.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5] Length = 400 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + + G V VK+LD + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196] gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196] Length = 571 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I KG V + D+GAFV G DGL+HI+ L+ RV S+V+ GD V K+L FD ++ Sbjct: 203 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVISVGDEVTAKVLKFDQEK 261 Query: 681 GKIKLSMK 688 ++ L MK Sbjct: 262 NRVSLGMK 269 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + D+GAFV +GLVH+S++ T + S VV+ GD V V +L+ D +R + Sbjct: 291 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKVVQLGDEVEVMILEIDEERRR 350 Query: 683 IKLSMK 688 I L MK Sbjct: 351 ISLGMK 356 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681 +GQ+ + DFG F+ G DGLVH+S LS + + + K+GD V +L D +R Sbjct: 377 RGQIKSITDFGVFIGLQGGIDGLVHLSDLSWNQPGEEAVRNYKKGDEVEAVVLSIDVERE 436 Query: 682 KIKLSMKVVDQNTGKPI 698 +I L +K Q G P Sbjct: 437 RISLGIK---QLEGDPF 450 >gi|332288796|ref|YP_004419648.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179] gi|330431692|gb|AEC16751.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179] Length = 549 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V + D+GAFV G DGL+HI+ ++ +RV ++V GD V VK+L FD DR + Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPGEIVNVGDEVTVKVLKFDRDRTR 254 Query: 683 IKLSMKVVDQN 693 + L +K + Q+ Sbjct: 255 VSLGLKQLGQD 265 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630 V+ G VN+ D+ TVK+ SL + ++ +I + VN G+V + Sbjct: 228 VKHPGEIVNVGDEVTVKVLKFDRDRTRVSLGLKQLGQDPWAAIAENYPVNSKLTGKVTNL 287 Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 D+G FV +GLVH+S++ T + S VV GD V V +L+ D +R +I L +K Sbjct: 288 TDYGCFVEILDGIEGLVHVSEMDWTNKNIHPSKVVSVGDEVEVMVLEIDEERRRISLGLK 347 >gi|302764282|ref|XP_002965562.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii] gi|300166376|gb|EFJ32982.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii] Length = 169 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 16/100 (16%) Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD----------- 662 ++PE+ I +G+V V FG FV G R GLVH+SQ+S V + D Sbjct: 8 ELPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAA 67 Query: 663 VVKEGDTVWVKLL----DFDDRGKIKLSMKVVDQNTGKPI 698 + +G+ +WVK++ + D KI SMK+V Q G+ + Sbjct: 68 IAGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107 >gi|148543502|ref|YP_001270872.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184152909|ref|YP_001841250.1| hypothetical protein LAR_0254 [Lactobacillus reuteri JCM 1112] gi|194467677|ref|ZP_03073664.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227363651|ref|ZP_03847765.1| RNA-binding protein [Lactobacillus reuteri MM2-3] gi|227544682|ref|ZP_03974731.1| RNA-binding protein [Lactobacillus reuteri CF48-3A] gi|300909076|ref|ZP_07126539.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112] gi|325681846|ref|ZP_08161365.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A] gi|148530536|gb|ABQ82535.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016] gi|183224253|dbj|BAG24770.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194454713|gb|EDX43610.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23] gi|227071320|gb|EEI09629.1| RNA-binding protein [Lactobacillus reuteri MM2-3] gi|227185328|gb|EEI65399.1| RNA-binding protein [Lactobacillus reuteri CF48-3A] gi|300894483|gb|EFK87841.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112] gi|324978937|gb|EGC15885.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A] Length = 164 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 40/71 (56%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV G+V + +FGAFV + GLVHISQ+S + + DV+ GD V K+ Sbjct: 4 EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDEVTAKVTRI 63 Query: 678 DDRGKIKLSMK 688 D GKI LS+K Sbjct: 64 GDDGKIALSIK 74 >gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334] gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334] Length = 718 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676 V + +G V V+DFGAFV DGL+HIS +S + + S VV GD TVWVK +D Sbjct: 642 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 701 Query: 677 FDDRGKIKLSMKVVDQNT 694 +R K+ LS+ D++ Sbjct: 702 -TEREKVNLSLLAPDESN 718 >gi|307709199|ref|ZP_07645658.1| 40S ribosomal protein S1 [Streptococcus mitis SK564] gi|307620145|gb|EFN99262.1| 40S ribosomal protein S1 [Streptococcus mitis SK564] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|289167754|ref|YP_003446023.1| 30S ribosomal protein S1 [Streptococcus mitis B6] gi|288907321|emb|CBJ22158.1| 30S ribosomal protein S1 [Streptococcus mitis B6] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|255659244|ref|ZP_05404653.1| RNA-binding protein [Mitsuokella multacida DSM 20544] gi|260848698|gb|EEX68705.1| RNA-binding protein [Mitsuokella multacida DSM 20544] Length = 152 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 + +FGAFV + GL+HIS+++ V D + E D V VK+L DDRGKI LS+K Sbjct: 16 ITNFGAFVELPEGKTGLIHISEVADVYVKDVHDFLSEKDKVKVKVLSIDDRGKIALSIK 74 >gi|145594251|ref|YP_001158548.1| RNA-binding S1 domain-containing protein [Salinispora tropica CNB-440] gi|145303588|gb|ABP54170.1| RNA binding S1 domain protein [Salinispora tropica CNB-440] Length = 803 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 E + +I D VP + I +G V V FGAFV +DGLVH+S +S V +VVK Sbjct: 642 EGVETIADLVPGL--ILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVRDPHEVVKS 699 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V V++LD D R +I L++++ D Sbjct: 700 GDVVKVRVLDVDVPRKRISLTLRLDD 725 >gi|15902808|ref|NP_358358.1| 30S ribosomal protein S1 [Streptococcus pneumoniae R6] gi|116515525|ref|YP_816245.1| 30S ribosomal protein S1 [Streptococcus pneumoniae D39] gi|148984592|ref|ZP_01817860.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71] gi|148988281|ref|ZP_01819728.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73] gi|148993674|ref|ZP_01823121.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68] gi|148997062|ref|ZP_01824716.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70] gi|149007194|ref|ZP_01830858.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74] gi|149021729|ref|ZP_01835760.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72] gi|168485810|ref|ZP_02710318.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC1087-00] gi|168490295|ref|ZP_02714494.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae SP195] gi|168490951|ref|ZP_02715094.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC0288-04] gi|168493016|ref|ZP_02717159.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC3059-06] gi|169832652|ref|YP_001694315.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Hungary19A-6] gi|182683776|ref|YP_001835523.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14] gi|194397407|ref|YP_002037497.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54] gi|221231643|ref|YP_002510795.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC 700669] gi|225854368|ref|YP_002735880.1| 30S ribosomal protein S1 [Streptococcus pneumoniae JJA] gi|225856529|ref|YP_002738040.1| 30S ribosomal protein S1 [Streptococcus pneumoniae P1031] gi|225858661|ref|YP_002740171.1| 30S ribosomal protein S1 [Streptococcus pneumoniae 70585] gi|225861244|ref|YP_002742753.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Taiwan19F-14] gi|298229157|ref|ZP_06962838.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255735|ref|ZP_06979321.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503131|ref|YP_003725071.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A] gi|307067459|ref|YP_003876425.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200] gi|15458359|gb|AAK99568.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae R6] gi|116076101|gb|ABJ53821.1| ribosomal protein S1 [Streptococcus pneumoniae D39] gi|147756762|gb|EDK63802.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70] gi|147761232|gb|EDK68199.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74] gi|147922983|gb|EDK74098.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71] gi|147925962|gb|EDK77036.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73] gi|147927754|gb|EDK78777.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68] gi|147930190|gb|EDK81176.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72] gi|168995154|gb|ACA35766.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae Hungary19A-6] gi|182629110|gb|ACB90058.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14] gi|183571017|gb|EDT91545.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC1087-00] gi|183571355|gb|EDT91883.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae SP195] gi|183574635|gb|EDT95163.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC0288-04] gi|183576994|gb|EDT97522.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae CDC3059-06] gi|194357074|gb|ACF55522.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54] gi|220674103|emb|CAR68621.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC 700669] gi|225721143|gb|ACO16997.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae 70585] gi|225723388|gb|ACO19241.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae JJA] gi|225725584|gb|ACO21436.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae P1031] gi|225728251|gb|ACO24102.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae Taiwan19F-14] gi|298238726|gb|ADI69857.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A] gi|301793998|emb|CBW36396.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV104] gi|301799856|emb|CBW32430.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae OXC141] gi|306408996|gb|ADM84423.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200] gi|327390213|gb|EGE88556.1| hypothetical protein SPAR5_0822 [Streptococcus pneumoniae GA04375] gi|332073191|gb|EGI83670.1| 30S ribosomal protein S1 [Streptococcus pneumoniae GA17570] gi|332204867|gb|EGJ18932.1| hypothetical protein SPAR120_0834 [Streptococcus pneumoniae GA47901] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|322376414|ref|ZP_08050907.1| ribosomal protein S1 [Streptococcus sp. M334] gi|321282221|gb|EFX59228.1| ribosomal protein S1 [Streptococcus sp. M334] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|293570248|ref|ZP_06681317.1| 30S ribosomal protein S1 [Enterococcus faecium E980] gi|291609655|gb|EFF38916.1| 30S ribosomal protein S1 [Enterococcus faecium E980] Length = 409 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 264 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 265 ERVSLSIK 272 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 288 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 348 PEEHRIALSIKALEE 362 >gi|261207579|ref|ZP_05922264.1| ribosomal protein S1 [Enterococcus faecium TC 6] gi|289565091|ref|ZP_06445544.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF] gi|260077962|gb|EEW65668.1| ribosomal protein S1 [Enterococcus faecium TC 6] gi|289163098|gb|EFD10945.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF] Length = 409 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 264 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 265 ERVSLSIK 272 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 288 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 348 PEEHRIALSIKALEE 362 >gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933] gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502] gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410] gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408] gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04] gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082] gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A] gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933] gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502] gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410] gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408] gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A] gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04] gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082] Length = 417 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 272 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 273 ERVSLSIK 280 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 296 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 356 PEEHRIALSIKALEE 370 >gi|323463927|gb|ADX76080.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius ED99] Length = 716 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--T 669 SI D+ + K+ G V V+DFGAFV +DGLVHIS+L+ + + D+V GD Sbjct: 636 SIEDLSKGMKL-NGTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVE 694 Query: 670 VWVKLLDFDDRGKIKLSM 687 VW++ +D +++GK+ L+M Sbjct: 695 VWIENID-ENKGKVALTM 711 >gi|293379547|ref|ZP_06625689.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1] gi|292641856|gb|EFF60024.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1] Length = 409 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 264 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 265 ERVSLSIK 272 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 288 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 348 PEEHRIALSIKALEE 362 >gi|163942616|ref|YP_001647500.1| general stress protein 13 [Bacillus weihenstephanensis KBAB4] gi|229014089|ref|ZP_04171211.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048] gi|229062574|ref|ZP_04199884.1| RNA binding S1 domain protein [Bacillus cereus AH603] gi|229135728|ref|ZP_04264502.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196] gi|229169624|ref|ZP_04297326.1| RNA binding S1 domain protein [Bacillus cereus AH621] gi|163864813|gb|ABY45872.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4] gi|228613820|gb|EEK70943.1| RNA binding S1 domain protein [Bacillus cereus AH621] gi|228647733|gb|EEL03794.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196] gi|228716677|gb|EEL68373.1| RNA binding S1 domain protein [Bacillus cereus AH603] gi|228747197|gb|EEL97078.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048] Length = 114 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 13 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 73 SLSLKAAKRKQGRILI 88 >gi|89100513|ref|ZP_01173374.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911] gi|89084779|gb|EAR63919.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911] Length = 156 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV GLVHIS+++ V +D +K GD V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPEGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|332076140|gb|EGI86606.1| hypothetical protein SPAR68_0864 [Streptococcus pneumoniae GA41301] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|319893018|ref|YP_004149893.1| S1 RNA-binding domain-containing transcription accessory protein [Staphylococcus pseudintermedius HKU10-03] gi|317162714|gb|ADV06257.1| S1 RNA-binding domain-containing transcription accessory protein [Staphylococcus pseudintermedius HKU10-03] Length = 716 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--T 669 SI D+ + K+ G V V+DFGAFV +DGLVHIS+L+ + + D+V GD Sbjct: 636 SIEDLSKGMKL-NGTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVE 694 Query: 670 VWVKLLDFDDRGKIKLSM 687 VW++ +D +++GK+ L+M Sbjct: 695 VWIENID-ENKGKVALTM 711 >gi|306829662|ref|ZP_07462852.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249] gi|304428748|gb|EFM31838.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + + G V VK+LD + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira defluvii] gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira defluvii] Length = 799 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + S+ D+ + + +G V V FGAFV +DGLVH+S L+ + V +VVK Sbjct: 664 RDGVESLADL-QPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALANKFVKDPHEVVKP 722 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694 G V VK+L D R +I L+M++ D T Sbjct: 723 GQIVKVKVLAVDVPRQRISLTMRMEDAAT 751 >gi|254490959|ref|ZP_05104141.1| ribosomal protein S1 [Methylophaga thiooxidans DMS010] gi|224463868|gb|EEF80135.1| ribosomal protein S1 [Methylophaga thiooxydans DMS010] Length = 530 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 5/98 (5%) Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661 E A RE ++ + E K+ KG V + D+GAFV G DGL+HI+ ++ +RV S Sbjct: 177 ENSAERE---ALLETLEEGKVVKGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVKHPS 232 Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698 +VV GD + V++L FD +R ++ L +K + + K I Sbjct: 233 EVVAIGDEIEVQVLKFDKERERVSLGLKQMGDDPWKDI 270 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 P +I+ G+V + D+G FV +GLVH+S++ T + S +V GD V V +L Sbjct: 275 PNSTRIH-GKVTNIADYGCFVEIEDGVEGLVHMSEMDWTNKNVHPSKLVSLGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDAERRRISLGIKQCQAN 352 >gi|162448175|ref|YP_001621307.1| Tex protein-related transcription accessory protein [Acholeplasma laidlawii PG-8A] gi|161986282|gb|ABX81931.1| Tex protein-related transcription accessory protein (S1 RNA binding domain) [Acholeplasma laidlawii PG-8A] Length = 724 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V DFGAFV DGLVHIS+LS + V DVV G V V +L+ D D+G+ Sbjct: 655 EGTVRNVTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVTVWVLNIDRDKGQ 714 Query: 683 IKLSM 687 + L+M Sbjct: 715 VGLTM 719 >gi|58581848|ref|YP_200864.1| transcription-related protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623748|ref|YP_451120.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576599|ref|YP_001913528.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426442|gb|AAW75479.1| transcription-related protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367688|dbj|BAE68846.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521051|gb|ACD58996.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 786 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD + VK+L+ D R Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIIKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I LS ++ D Sbjct: 717 KRIALSCRLSD 727 >gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 713 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS++S V S V+ GD TVWV +D DR Sbjct: 642 EGTVRNVVDFGAFVDIGVHEDGLIHISEMSQTFVNHPSQVLSVGDVVTVWVSKIDL-DRH 700 Query: 682 KIKLSM 687 K+ LS+ Sbjct: 701 KVNLSL 706 >gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249] gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249] Length = 709 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676 V + +G V V+DFGAFV DGL+HIS +S + + S VV GD TVWVK +D Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692 Query: 677 FDDRGKIKLSMKVVDQN 693 +R K+ LS+ D+ Sbjct: 693 -TEREKVNLSLLAPDET 708 >gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR + +R+I L+ GS L GDT+ I T+ +E+ + G + Sbjct: 1 MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56 Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y +P AT + S G + R + RL RA+ V+ A T+ I Sbjct: 57 GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++ A +P+ +A ++G+V+D ++ Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D V T G Sbjct: 174 LDLNYAEDSQADVDMNVIMTGKG 196 >gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis] Length = 249 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 32/195 (16%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360 ++ D+ R+DGR + +R I A++G+ + GS+ +G+T+A+ VV G+R Sbjct: 6 LLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKM 65 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418 + S+ Q Y+ +TGE RR G + + +H L QT + Sbjct: 66 LHDRSVVNCQ-------YSMATFSTGE------RKRRPHGDRKSSEMTLH--LKQTFEAA 110 Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472 +P + + I +I ++DG + V ++LA++DAG+P+ V + G ++D Sbjct: 111 ILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIED--- 167 Query: 473 FIILSDISGDEDHLG 487 L+D+S E+ G Sbjct: 168 -TPLADLSYVEEAAG 181 >gi|291543623|emb|CBL16732.1| Predicted RNA binding protein (contains ribosomal protein S1 domain) [Ruminococcus sp. 18P13] Length = 156 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E+ ++Y+G V + +GAFV G+VHIS+++ V+ D + E TV VK+L Sbjct: 4 EIGQVYEGVVKGITPYGAFVDLADGVTGMVHISEVANVYVSNIRDHLTENQTVKVKVLSI 63 Query: 678 DDRGKIKLSMK 688 ++ GKI LS+K Sbjct: 64 NEAGKISLSIK 74 >gi|317132412|ref|YP_004091726.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens harbinense YUAN-3] gi|315470391|gb|ADU26995.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens harbinense YUAN-3] Length = 666 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V I ++V M FGAF DGL+HISQ++ VAK D ++ G V VK+++ Sbjct: 574 QVGDIVDAKIVNFMTFGAFAQIIPGVDGLIHISQIADHHVAKPQDELELGQEVRVKIIEI 633 Query: 678 -DDRGKIKLSMK 688 +DR +I LS++ Sbjct: 634 EEDRKRISLSIR 645 >gi|209559262|ref|YP_002285734.1| 30S ribosomal protein S1 [Streptococcus pyogenes NZ131] gi|209540463|gb|ACI61039.1| SSU ribosomal protein S1p [Streptococcus pyogenes NZ131] Length = 401 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + G V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L D+ Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 255 GRVSLSLK 262 >gi|30264941|ref|NP_847318.1| general stress protein 13 [Bacillus anthracis str. Ames] gi|47530437|ref|YP_021786.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor'] gi|47566934|ref|ZP_00237651.1| MW0837 [Bacillus cereus G9241] gi|49187760|ref|YP_031013.1| general stress protein 13 [Bacillus anthracis str. Sterne] gi|49480341|ref|YP_038921.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140622|ref|YP_086205.1| general stress protein 13 [Bacillus cereus E33L] gi|65316891|ref|ZP_00389850.1| COG1098: Predicted RNA binding protein (contains ribosomal protein S1 domain) [Bacillus anthracis str. A2012] gi|165870810|ref|ZP_02215462.1| general stress protein 13 [Bacillus anthracis str. A0488] gi|167634998|ref|ZP_02393316.1| general stress protein 13 [Bacillus anthracis str. A0442] gi|167640042|ref|ZP_02398310.1| general stress protein 13 [Bacillus anthracis str. A0193] gi|170685687|ref|ZP_02876910.1| general stress protein 13 [Bacillus anthracis str. A0465] gi|170706916|ref|ZP_02897373.1| general stress protein 13 [Bacillus anthracis str. A0389] gi|177652259|ref|ZP_02934762.1| general stress protein 13 [Bacillus anthracis str. A0174] gi|190567121|ref|ZP_03020036.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I] gi|196033216|ref|ZP_03100629.1| general stress protein 13 [Bacillus cereus W] gi|196040462|ref|ZP_03107762.1| general stress protein 13 [Bacillus cereus NVH0597-99] gi|196043862|ref|ZP_03111099.1| general stress protein 13 [Bacillus cereus 03BB108] gi|218906099|ref|YP_002453933.1| general stress protein 13 [Bacillus cereus AH820] gi|225866875|ref|YP_002752253.1| general stress protein 13 [Bacillus cereus 03BB102] gi|227817669|ref|YP_002817678.1| general stress protein 13 [Bacillus anthracis str. CDC 684] gi|229603942|ref|YP_002869144.1| general stress protein 13 [Bacillus anthracis str. A0248] gi|254687233|ref|ZP_05151090.1| general stress protein 13 [Bacillus anthracis str. CNEVA-9066] gi|254725246|ref|ZP_05187029.1| general stress protein 13 [Bacillus anthracis str. A1055] gi|254735430|ref|ZP_05193138.1| general stress protein 13 [Bacillus anthracis str. Western North America USA6153] gi|254740697|ref|ZP_05198388.1| general stress protein 13 [Bacillus anthracis str. Kruger B] gi|254753041|ref|ZP_05205077.1| general stress protein 13 [Bacillus anthracis str. Vollum] gi|254761384|ref|ZP_05213405.1| general stress protein 13 [Bacillus anthracis str. Australia 94] gi|300119698|ref|ZP_07057238.1| general stress protein 13 [Bacillus cereus SJ1] gi|301056390|ref|YP_003794601.1| RNA binding S1 domain-containing protein [Bacillus anthracis CI] gi|30259616|gb|AAP28804.1| general stress protein 13 [Bacillus anthracis str. Ames] gi|47505585|gb|AAT34261.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor'] gi|47556252|gb|EAL14586.1| MW0837 [Bacillus cereus G9241] gi|49181687|gb|AAT57063.1| general stress protein 13 [Bacillus anthracis str. Sterne] gi|49331897|gb|AAT62543.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974091|gb|AAU15641.1| general stress protein 13 [Bacillus cereus E33L] gi|164713319|gb|EDR18844.1| general stress protein 13 [Bacillus anthracis str. A0488] gi|167512123|gb|EDR87501.1| general stress protein 13 [Bacillus anthracis str. A0193] gi|167529748|gb|EDR92497.1| general stress protein 13 [Bacillus anthracis str. A0442] gi|170128019|gb|EDS96889.1| general stress protein 13 [Bacillus anthracis str. A0389] gi|170670151|gb|EDT20891.1| general stress protein 13 [Bacillus anthracis str. A0465] gi|172082265|gb|EDT67331.1| general stress protein 13 [Bacillus anthracis str. A0174] gi|190561625|gb|EDV15595.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I] gi|195994645|gb|EDX58600.1| general stress protein 13 [Bacillus cereus W] gi|196025198|gb|EDX63868.1| general stress protein 13 [Bacillus cereus 03BB108] gi|196028594|gb|EDX67201.1| general stress protein 13 [Bacillus cereus NVH0597-99] gi|218537073|gb|ACK89471.1| general stress protein 13 [Bacillus cereus AH820] gi|225790437|gb|ACO30654.1| general stress protein 13 [Bacillus cereus 03BB102] gi|227007010|gb|ACP16753.1| general stress protein 13 [Bacillus anthracis str. CDC 684] gi|229268350|gb|ACQ49987.1| general stress protein 13 [Bacillus anthracis str. A0248] gi|298722926|gb|EFI63828.1| general stress protein 13 [Bacillus cereus SJ1] gi|300378559|gb|ADK07463.1| RNA binding S1 domain protein [Bacillus cereus biovar anthracis str. CI] Length = 114 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 13 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 73 SLSLKAAKRKQGRILI 88 >gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296] gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296] Length = 727 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ + I D+ ++ + +G V V+DFGAFV DGL+HIS +S + + S VV Sbjct: 640 RQDVLDIKDL-KIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 698 Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693 GD TVWVK +D +R K+ LS+ D+ Sbjct: 699 GDLVTVWVKKID-TEREKVNLSLLAPDET 726 >gi|315302310|ref|ZP_07873200.1| protein YhgF [Listeria ivanovii FSL F6-596] gi|313629320|gb|EFR97563.1| protein YhgF [Listeria ivanovii FSL F6-596] Length = 725 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V D+V GD TVWV +D + Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDIVSVGDVVTVWVDEVD-TKKN 711 Query: 682 KIKLSMK 688 +I L+M+ Sbjct: 712 RIALTMR 718 >gi|307704664|ref|ZP_07641564.1| 40S ribosomal protein S1 [Streptococcus mitis SK597] gi|307706411|ref|ZP_07643221.1| 40S ribosomal protein S1 [Streptococcus mitis SK321] gi|307708551|ref|ZP_07645016.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261] gi|307615467|gb|EFN94675.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261] gi|307618198|gb|EFN97355.1| 40S ribosomal protein S1 [Streptococcus mitis SK321] gi|307621773|gb|EFO00810.1| 40S ribosomal protein S1 [Streptococcus mitis SK597] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + +K G V VK+L+ + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVKVKVLEVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|296505343|ref|YP_003667043.1| general stress protein 13 [Bacillus thuringiensis BMB171] gi|296326395|gb|ADH09323.1| general stress protein 13 [Bacillus thuringiensis BMB171] Length = 114 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 13 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 73 SLSLKAAKRKQGRILI 88 >gi|55981717|ref|YP_145014.1| hypothetical protein TTHA1748 [Thermus thermophilus HB8] gi|55773130|dbj|BAD71571.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 125 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%) Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688 FGAFV G GLVHISQ++ E V D + EGD V V + D +G++ LS+K Sbjct: 19 FGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDAKGRLDLSIK 74 >gi|313890098|ref|ZP_07823733.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN 20026] gi|313121459|gb|EFR44563.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN 20026] Length = 404 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + G V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L D+ Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 255 GRVSLSLK 262 >gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068] gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068] Length = 600 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%) Query: 615 DVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 D+P + ++ G V K+ +FG FV +GL+HIS+L+ +V DVVK GD + Sbjct: 471 DIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVGDKID 530 Query: 672 VKLL--DFDDRGKIKLSMKVVD 691 VK+L D D+R KI LS K V+ Sbjct: 531 VKILRVDIDER-KIGLSRKRVE 551 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V + KG VV VM +GAFV +GLVHIS++S T RV S++V GD + V +L Sbjct: 303 VGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGV 362 Query: 678 DDRG-KIKLSMKVVDQN 693 D G ++ L MK +N Sbjct: 363 DKDGQQLSLGMKQTQEN 379 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 589 DDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647 D+ I S + IE RE R ++ E+ ++ KG V + +FGAFV G DGL+ Sbjct: 187 DEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGAFVDLGGI-DGLL 245 Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697 HI+ +S ER+ S++V + V +L D ++ KI L +K Q G P Sbjct: 246 HITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLK---QKEGNP 293 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 2/77 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677 V+ I +G+V + ++GAFV DGL+H+S +S T +++ S+++++G V K+L Sbjct: 390 VDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSV 449 Query: 678 D-DRGKIKLSMKVVDQN 693 D +R +I L +K +D++ Sbjct: 450 DQERRRIALGLKQLDED 466 >gi|170749398|ref|YP_001755658.1| RNA-binding S1 domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655920|gb|ACB24975.1| RNA binding S1 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 772 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVHIS ++ R+A ++VV+ G+ V V +L+ D R + Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARRRIASPTEVVRIGEVVRVLVLNVDVPRKR 714 Query: 683 IKLSMKVVDQ-NTGKP 697 I LSM++ D G+P Sbjct: 715 IALSMRLDDPVEPGQP 730 >gi|289665857|ref|ZP_06487438.1| transcription-related protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTCRLSD 727 >gi|15674934|ref|NP_269108.1| 30S ribosomal protein S1 [Streptococcus pyogenes M1 GAS] gi|19745977|ref|NP_607113.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS8232] gi|50914078|ref|YP_060050.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10394] gi|71903360|ref|YP_280163.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS6180] gi|71910528|ref|YP_282078.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS5005] gi|94988402|ref|YP_596503.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS9429] gi|94990283|ref|YP_598383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10270] gi|94992284|ref|YP_600383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS2096] gi|94994205|ref|YP_602303.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10750] gi|306827494|ref|ZP_07460777.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782] gi|13622077|gb|AAK33829.1| putative ribosomal protein S1-like DNA-binding protein [Streptococcus pyogenes M1 GAS] gi|19748138|gb|AAL97612.1| putative ribosomal protein S1-like DNA-binding protein [Streptococcus pyogenes MGAS8232] gi|50903152|gb|AAT86867.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10394] gi|71802455|gb|AAX71808.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS6180] gi|71853310|gb|AAZ51333.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS5005] gi|94541910|gb|ABF31959.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS9429] gi|94543791|gb|ABF33839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10270] gi|94545792|gb|ABF35839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS2096] gi|94547713|gb|ABF37759.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10750] gi|304430292|gb|EFM33318.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782] Length = 401 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + G V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L D+ Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 255 GRVSLSLK 262 >gi|258616519|ref|ZP_05714289.1| 30S ribosomal protein S1 [Enterococcus faecium DO] gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68] gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039] gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162] gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071] gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636] gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679] gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317] gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C] gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B] gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01] gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68] gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071] gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636] gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679] gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317] gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039] gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162] gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01] gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B] gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C] Length = 409 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + G+V ++ DFGAFV G DGLVH+S++S VAK SDV+ D V VK+L + ++ Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 264 Query: 681 GKIKLSMK 688 ++ LS+K Sbjct: 265 ERVSLSIK 272 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G V ++ FGAFV +GLVHISQ+S + +A +V+ EGD V VK+L+ Sbjct: 288 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347 Query: 679 -DRGKIKLSMKVVDQ 692 + +I LS+K +++ Sbjct: 348 PEEHRIALSIKALEE 362 >gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp] gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp] Length = 239 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R GR ++ +R I + GS L GDT+ I V++ + L G + Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ESGVPRFLKGQGQG 58 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP ATGE ++ A ++ G RL R++ L + TL + + Sbjct: 59 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ G+ +AL+DA G P+ + +A +++G+ + G+ + Sbjct: 119 VIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQ-GEPVL--- 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V T++G Sbjct: 175 DLDYLEDSAAETDLNVVMTNAG 196 >gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99] Length = 394 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E+++SI + + +G+V ++ +FGAF+ G DGLVH+S+LS E V +VV G Sbjct: 187 ELLQSI----KAGDVIEGKVARLTNFGAFIDLGGV-DGLVHVSELSHEHVKSPEEVVSIG 241 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 DTV VK+ + D ++ LS+K Sbjct: 242 DTVKVKVRSVEQDSERVSLSIK 263 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V+++ FGAFV GLVHIS++S + + +V++ G TV VK+L + + Sbjct: 282 IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEE 341 Query: 681 GKIKLSMKVVD 691 +I LS+K + Sbjct: 342 ERISLSIKAAN 352 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I D+ E +KI G+V ++ D VH G + +G++ ISQLST V ++VVK GD + Sbjct: 11 INDIKEGDKI-TGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIG 69 Query: 671 -WVKLLDFDDRGK 682 +V ++ D+ + Sbjct: 70 AYVTKIEVDEENE 82 >gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208] gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3] Length = 245 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R DGR + +R I+ + + GS L G+T+ I ++ +++ L G + Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56 Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP AT + S G S R + RL RA+ V+ T+ I Sbjct: 57 GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116 Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ LA L+ +GV P++ +A I++G+ K+ +L Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAAGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ +ED +D + T SG Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSG 196 >gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [Ruminococcus sp. 18P13] Length = 661 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654 I + + A+ +AAR + EV +++ G+V + +GAFV G DG+VHIS+LS Sbjct: 460 IKAVAKAQKDAARA---KFWETAEVGQVFTGEVKSLTSYGAFVDL-GGIDGMVHISELSW 515 Query: 655 ERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQN 693 +R+ S+VVK GD V++K LD + +I L K + N Sbjct: 516 KRIKHPSEVVKVGDMLEVYIKALD-PEANRISLGYKKKEDN 555 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + VV + FGAF DGL+HISQ++ +RV D++ G V VK+++ D Sbjct: 566 VGDVVDATVVSITQFGAFAQIMDGVDGLIHISQIANQRVDNVKDILSVGQQVQVKIVEID 625 Query: 679 -DRGKIKLSMKVV 690 ++ +I +SM+ + Sbjct: 626 PEKKRISISMRAL 638 >gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143] gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143] Length = 709 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGL+HIS +S + + S VV GD TVWVK +D +R Sbjct: 638 EGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID-TERE 696 Query: 682 KIKLSMKVVDQN 693 K+ LS+ D+ Sbjct: 697 KVNLSLLAPDET 708 >gi|332524026|ref|ZP_08400278.1| putative ribosomal protein S1 [Streptococcus porcinus str. Jelinkova 176] gi|332315290|gb|EGJ28275.1| putative ribosomal protein S1 [Streptococcus porcinus str. Jelinkova 176] Length = 406 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680 + G V ++ FGAF+ G DGLVH+++LS ER VV G+ V VK+L D+ Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254 Query: 681 GKIKLSMK 688 G++ LS+K Sbjct: 255 GRVSLSLK 262 >gi|309774609|ref|ZP_07669634.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917640|gb|EFP63355.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 715 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV DGLVHIS++S RV+ S++V GD VWV +D +++ Sbjct: 647 EGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRVSHPSELVSVGDIVKVWVYHID-EEKQ 705 Query: 682 KIKLSM 687 K++LS+ Sbjct: 706 KVQLSL 711 >gi|289669048|ref|ZP_06490123.1| transcription-related protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTCRLSD 727 >gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] Length = 260 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 26/204 (12%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQR 371 R DGR + +R ++ G Q GS L G+T+ + ++ E V G+ + Sbjct: 4 RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASV-----ELGVPGWRRGSGQ 58 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT E SR + + G RL R++ + A T+ I Sbjct: 59 GWLTAEYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDC 118 Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475 ++ ++DG + A++ G+ +AL DA PIS +A +++G+V D + Sbjct: 119 DVLQADGGTRTASITGAYVALCDAVTYLGAAGKLTDPQPISCAIAAVSVGVV----DGRV 174 Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499 D+ +ED +D V TD+G Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198 >gi|160941601|ref|ZP_02088932.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC BAA-613] gi|158435495|gb|EDP13262.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC BAA-613] Length = 715 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V V+DFGAFV +DGLVHISQ++ + + + V GD V VK+L D + Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDKYIKHPLEAVSVGDIVDVKILSVDLAK 704 Query: 681 GKIKLSMKVV 690 +I L+MK V Sbjct: 705 KRISLTMKGV 714 >gi|139473926|ref|YP_001128642.1| 30S ribosomal protein S1 [Streptococcus pyogenes str. Manfredo] gi|134272173|emb|CAM30418.1| putative 30S ribosomal protein S1 [Streptococcus pyogenes str. Manfredo] Length = 401 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678 + +G+V ++ DFGAFV DGLVHISQ+S +RV DV+ G V VK+L+ D Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340 Query: 679 DRGKIKLSMKVVDQ 692 +R + LS+K +++ Sbjct: 341 ER--VSLSIKALEE 352 >gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379] Length = 723 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 R+ IR I D+ E + +G V V FGAFV +DGLVHIS L+ V D V+ Sbjct: 637 RDDIRKIEDLRE-GMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688 G V VK+L D R +I LS++ Sbjct: 696 GQLVRVKVLSADPKRKRISLSIR 718 >gi|256829796|ref|YP_003158524.1| RNA binding S1 domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578972|gb|ACU90108.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 472 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW--VKLLDFDDRG 681 G+VVK+MDFGAFV +GLVH+S++S +R+ K DVV+ GD V VK +D + + Sbjct: 286 GKVVKLMDFGAFVEIAPGIEGLVHVSEMSYAKRINKPGDVVQVGDMVAAVVKQIDVEKQ- 344 Query: 682 KIKLSMK 688 +I LSM+ Sbjct: 345 RISLSMR 351 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663 +A+ +++D I +G V ++ FGAFV +GLVHIS+++ R+ ++ Sbjct: 179 QASASFFETVSD----GDIVEGTVTRLAAFGAFVELVPGVEGLVHISEIAWARIQSPEEI 234 Query: 664 VKEGDTVWVKLL 675 + GD V VK L Sbjct: 235 LSVGDKVRVKYL 246 >gi|114778276|ref|ZP_01453135.1| probable transcriptional accessory protein [Mariprofundus ferrooxydans PV-1] gi|114551378|gb|EAU53934.1| probable transcriptional accessory protein [Mariprofundus ferrooxydans PV-1] Length = 825 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 ++ + D+ E I +G V V +FGAFV +DGLVHIS L+ + + VVK G+ Sbjct: 655 VKELRDLRE-GMILEGVVTNVANFGAFVDIGVHQDGLVHISALTHQFIDDPRKVVKTGEV 713 Query: 670 VWVKLLDFDDRGK-IKLSMKVVD 691 V VK+L+ D R K I L+M++ D Sbjct: 714 VQVKVLEVDARRKRISLTMRMDD 736 >gi|111219982|ref|YP_710776.1| putative transcriptional accessory protein [Frankia alni ACN14a] gi|111147514|emb|CAJ59167.1| Putative transcriptional accessory protein [Frankia alni ACN14a] Length = 895 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V FGAFV +DGLVH+S +S V+ +V K GD V VK+LD D R + Sbjct: 666 EGTVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVTVKVLDVDIPRKR 725 Query: 683 IKLSMKVVDQ 692 I L++++ D+ Sbjct: 726 ISLTLRLDDE 735 >gi|323486378|ref|ZP_08091703.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum WAL-14163] gi|323694998|ref|ZP_08109145.1| YhgF [Clostridium symbiosum WAL-14673] gi|323400360|gb|EGA92733.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum WAL-14163] gi|323500942|gb|EGB16857.1| YhgF [Clostridium symbiosum WAL-14673] Length = 713 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V V+DFGAFV +DGLVHISQ++ + + V GD V VK+L D + Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEAVSVGDIVEVKVLGVDLAK 704 Query: 681 GKIKLSMKV 689 +I L+MK+ Sbjct: 705 KRISLTMKL 713 >gi|319892466|ref|YP_004149341.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03] gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03] Length = 394 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E+++SI + + +G+V ++ +FGAF+ G DGLVH+S+LS E V +VV G Sbjct: 187 ELLQSI----KAGDVIEGKVARLTNFGAFIDLGGV-DGLVHVSELSHEHVKSPEEVVSIG 241 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 DTV VK+ + D ++ LS+K Sbjct: 242 DTVKVKVRSVEQDSERVSLSIK 263 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G+V+++ FGAFV GLVHIS++S + + +V++ G TV VK+L + + Sbjct: 282 IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEE 341 Query: 681 GKIKLSMKVVD 691 +I LS+K + Sbjct: 342 ERISLSIKAAN 352 Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I D+ E +KI G+V ++ D VH G + +G++ ISQLST V ++VVK GD + Sbjct: 11 INDIKEGDKI-TGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIG 69 Query: 671 -WVKLLDFDDRGK 682 +V ++ D+ + Sbjct: 70 AYVTKIEVDEENE 82 >gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix orenii H 168] gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix orenii H 168] Length = 678 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ KG+V K++DFGAFV G +GL+HIS++S R+ S+V++EG + VK+L + + Sbjct: 480 QVVKGKVTKIVDFGAFVDLGGI-EGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKE 538 Query: 680 RGKIKLSMK 688 +I L +K Sbjct: 539 EERISLGLK 547 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 6/83 (7%) Query: 621 KIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675 K Y+G+VV K++DFGAF+ +GL+HISQLS V +VV G+ + +++ Sbjct: 560 KHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEII 619 Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697 + D ++ ++ LS+K +++ P Sbjct: 620 NIDPEQKRVGLSIKALEEQPETP 642 >gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767] gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii] Length = 1716 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVA 658 +EI +++ D+ EV +I++G V +V DFGAF+ G + GL H SQ+S V Sbjct: 1228 SEINGELNVLKKFEDL-EVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQISDNDVE 1286 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 S + EGD V VK+L D ++ ++ L MK Sbjct: 1287 NVSSLFGEGDRVKVKILAIDQEKKQLSLGMK 1317 >gi|260589442|ref|ZP_05855355.1| ribosomal protein S1 [Blautia hansenii DSM 20583] gi|260540187|gb|EEX20756.1| ribosomal protein S1 [Blautia hansenii DSM 20583] Length = 250 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 RS D +V I +G V + +GAF+ GLVH+SQ+S +R+ V+ GDTV Sbjct: 138 RSKIDDIKVGSIVEGTVESLQTYGAFIDLGDGISGLVHVSQISEKRIKSPKAVLSIGDTV 197 Query: 671 WVKLLDFDDRGKIKLSMKVVD 691 K++ +D GKI LSMK ++ Sbjct: 198 KAKVIKNED-GKISLSMKALN 217 >gi|66768285|ref|YP_243047.1| transcription-related protein [Xanthomonas campestris pv. campestris str. 8004] gi|66573617|gb|AAY49027.1| transcription-related protein [Xanthomonas campestris pv. campestris str. 8004] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTRRLSD 727 >gi|21231593|ref|NP_637510.1| transcription-related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113282|gb|AAM41434.1| transcription-related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTRRLSD 727 >gi|30022942|ref|NP_834573.1| general stress protein 13 [Bacillus cereus ATCC 14579] gi|75761837|ref|ZP_00741767.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903399|ref|ZP_04067528.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222] gi|228910735|ref|ZP_04074545.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200] gi|228923634|ref|ZP_04086913.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942063|ref|ZP_04104604.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955163|ref|ZP_04117173.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968005|ref|ZP_04129013.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228974993|ref|ZP_04135553.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981584|ref|ZP_04141880.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407] gi|229048593|ref|ZP_04194151.1| RNA binding S1 domain protein [Bacillus cereus AH676] gi|229072384|ref|ZP_04205587.1| RNA binding S1 domain protein [Bacillus cereus F65185] gi|229082146|ref|ZP_04214611.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2] gi|229112343|ref|ZP_04241881.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15] gi|229130160|ref|ZP_04259120.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4] gi|229147452|ref|ZP_04275800.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24] gi|229181198|ref|ZP_04308529.1| RNA binding S1 domain protein [Bacillus cereus 172560W] gi|229193166|ref|ZP_04320118.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876] gi|29898501|gb|AAP11774.1| S1-type RNA-binding domain [Bacillus cereus ATCC 14579] gi|74490670|gb|EAO53956.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228590286|gb|EEK48153.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876] gi|228602252|gb|EEK59742.1| RNA binding S1 domain protein [Bacillus cereus 172560W] gi|228635997|gb|EEK92479.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24] gi|228653274|gb|EEL09152.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4] gi|228670991|gb|EEL26297.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15] gi|228701138|gb|EEL53659.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2] gi|228710707|gb|EEL62679.1| RNA binding S1 domain protein [Bacillus cereus F65185] gi|228722712|gb|EEL74099.1| RNA binding S1 domain protein [Bacillus cereus AH676] gi|228778069|gb|EEM26340.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407] gi|228784698|gb|EEM32717.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791676|gb|EEM39270.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228804504|gb|EEM51113.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817579|gb|EEM63663.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835995|gb|EEM81357.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848907|gb|EEM93751.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200] gi|228856235|gb|EEN00766.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222] Length = 119 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 18 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 78 SLSLKAAKRKQGRILI 93 >gi|228993620|ref|ZP_04153527.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442] gi|228999658|ref|ZP_04159234.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17] gi|229007217|ref|ZP_04164818.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4] gi|228753971|gb|EEM03408.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4] gi|228760020|gb|EEM08990.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17] gi|228766049|gb|EEM14696.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442] Length = 138 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 + KG+V + D+GAFV GLVHIS+++ V D +K GD V VK+L D+ Sbjct: 34 VVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDIVEVKVLSIDEEH 93 Query: 682 -KIKLSMKVVDQNTGKPIV 699 K+ LS+K + G+ IV Sbjct: 94 RKMSLSLKAAKRKQGRIIV 112 >gi|224825246|ref|ZP_03698352.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002] gi|224602917|gb|EEG09094.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002] Length = 767 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V +FGAFV +DGLVHIS LS + + VVK GD V VK+ + D R Sbjct: 654 VLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVQEVDVKR 713 Query: 681 GKIKLSMKVVDQ 692 +I L+M++ D+ Sbjct: 714 RRIALTMRLDDE 725 >gi|88861076|ref|ZP_01135711.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Pseudoalteromonas tunicata D2] gi|88817004|gb|EAR26824.1| conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) [Pseudoalteromonas tunicata D2] Length = 772 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ++D+ + I +G V V +FGAFV +DGLVHIS ++ + ++ +VVK Sbjct: 637 KEGVEKVSDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKA 695 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692 GD V VK+++ D R +I +M++ D+ Sbjct: 696 GDIVKVKVVEVDAARNRISFTMRLNDE 722 >gi|284007586|emb|CBA73155.1| 30S ribosomal protein S1 [Arsenophonus nasoniae] Length = 569 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD + VK+L FD DR + Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRDRTR 266 Query: 683 IKLSMK 688 + L +K Sbjct: 267 VSLGLK 272 >gi|306825063|ref|ZP_07458405.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432499|gb|EFM35473.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 400 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + G+V ++ FGAF+ G DGLVH+++LS ER VV G+ + VK+LD + Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251 Query: 679 -DRGKIKLSMK 688 + G++ LS+K Sbjct: 252 EEEGRVSLSLK 262 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V ++ DFGAFV DGLVH+SQ+S +R+ + + G V VK+LD + D Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340 Query: 681 GKIKLSMKVVDQ 692 ++ LS+K +++ Sbjct: 341 ERVSLSIKALEE 352 >gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119] gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119] Length = 393 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679 N + +G+V+++ +FGAFV GLVHIS+++ + + S+V++ G V VK+L D+ Sbjct: 280 NDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDE 339 Query: 680 RG-KIKLSMK 688 +I LS+K Sbjct: 340 ENERISLSIK 349 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG+V ++ +FGAFV G DGLVH+S+LS E V DVV G V VK+ + D Sbjct: 197 VIKGKVARLTNFGAFVDIGGV-DGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDT 255 Query: 681 GKIKLSMK 688 +I LS+K Sbjct: 256 ERISLSIK 263 Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670 I D+ E +K+ G+V +V D VH GA+ +G++ ISQLST + S+++ EGD + Sbjct: 11 INDIKEGDKV-TGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIE 69 Query: 671 -WVKLLDFDDRGK 682 +V ++ D+ + Sbjct: 70 AYVTKIEIDEENE 82 >gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa] gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa] Length = 412 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 + + G V + +GAF+ G +GL+H+SQ+S +RV+ S V++ GDT+ V +L D Sbjct: 261 IGSVVTGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHD 319 Query: 679 -DRGKIKLSMKVVDQNTG 695 +RG++ LS K ++ G Sbjct: 320 RERGRVSLSTKKLEPTPG 337 >gi|210608535|ref|ZP_03287908.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787] gi|210152986|gb|EEA83992.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787] Length = 222 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV + G V + +GAF+ GLVH+SQ+ +R+ +DV+K G+ V VK++ Sbjct: 119 EVGSVLTGTVETLQTYGAFIRLENGLSGLVHVSQICEKRIKTPADVLKTGEEVNVKVIGI 178 Query: 678 DDRGKIKLSMKVV 690 D GKI LS+K + Sbjct: 179 KD-GKISLSIKAL 190 >gi|118479994|ref|YP_897145.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam] gi|228917529|ref|ZP_04081074.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929927|ref|ZP_04092941.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936189|ref|ZP_04098989.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948623|ref|ZP_04110901.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988145|ref|ZP_04148243.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229032543|ref|ZP_04188508.1| RNA binding S1 domain protein [Bacillus cereus AH1271] gi|229093998|ref|ZP_04225085.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42] gi|229124443|ref|ZP_04253630.1| RNA binding S1 domain protein [Bacillus cereus 95/8201] gi|229158502|ref|ZP_04286562.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342] gi|229163882|ref|ZP_04291822.1| RNA binding S1 domain protein [Bacillus cereus R309803] gi|229187141|ref|ZP_04314287.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1] gi|118419219|gb|ABK87638.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam] gi|228596310|gb|EEK53984.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1] gi|228619503|gb|EEK76389.1| RNA binding S1 domain protein [Bacillus cereus R309803] gi|228624938|gb|EEK81705.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342] gi|228658991|gb|EEL14644.1| RNA binding S1 domain protein [Bacillus cereus 95/8201] gi|228689382|gb|EEL43198.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42] gi|228728728|gb|EEL79739.1| RNA binding S1 domain protein [Bacillus cereus AH1271] gi|228771556|gb|EEM20024.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810930|gb|EEM57273.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823436|gb|EEM69268.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829724|gb|EEM75347.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842096|gb|EEM87198.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 119 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 18 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 78 SLSLKAAKRKQGRILI 93 >gi|225387171|ref|ZP_03756935.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme DSM 15981] gi|225046719|gb|EEG56965.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme DSM 15981] Length = 715 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%) Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 EM R I TDV ++ + G V+K V+DFGAFV +DGLVHISQ++ + Sbjct: 624 EMPRPILRTDVMDMKDLKPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHP 683 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 + V GD V VK+L D + +I L+MK Sbjct: 684 LEAVSVGDVVDVKVLGVDLAKNRISLTMK 712 >gi|192289017|ref|YP_001989622.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1] gi|192282766|gb|ACE99146.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1] Length = 777 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 20/152 (13%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606 +I+A I+ +IG K+++G+ Q A D+ + S L E+E Sbjct: 579 KILAATKSDIKALIGQT-KMLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633 Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E + ITD+ + I + + V FGAF +DGL+HIS +S R+ Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 +VVK G V VK+L+ D R +I L++++ D Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724 >gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326] gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326] Length = 556 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|39933661|ref|NP_945937.1| RNA binding S1 [Rhodopseudomonas palustris CGA009] gi|39647507|emb|CAE26028.1| transcriptional accessory protein [Rhodopseudomonas palustris CGA009] Length = 778 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 20/152 (13%) Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606 +I+A I+ +IG K+++G+ Q A D+ + S L E+E Sbjct: 579 KILAATKSDIKALIGQT-KMLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633 Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E + ITD+ + I + + V FGAF +DGL+HIS +S R+ Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691 +VVK G V VK+L+ D R +I L++++ D Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724 >gi|91976666|ref|YP_569325.1| RNA binding S1 [Rhodopseudomonas palustris BisB5] gi|91683122|gb|ABE39424.1| RNA binding S1 [Rhodopseudomonas palustris BisB5] Length = 798 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ITD+ + I + + V FGAF +DGL+HIS +S R+ +VVK Sbjct: 663 QEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKP 721 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 G V VK+L+ D R +I L++++ D Sbjct: 722 GQVVKVKVLEVDVPRNRIGLTLRLAD 747 >gi|312114916|ref|YP_004012512.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100] gi|311220045|gb|ADP71413.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100] Length = 778 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + I+D+ + + +G V V FGAF+ +DGL H+S LS V DVVK Sbjct: 642 QEGVEKISDL-KPGMVLEGVVTNVAAFGAFIDIGVHQDGLAHVSALSKTFVKDPRDVVKP 700 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 GD V VK+L+ D R +I L++++ D Sbjct: 701 GDVVRVKVLEVDAPRKRISLTLRLDD 726 >gi|188991422|ref|YP_001903432.1| Putative RNA-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167733182|emb|CAP51380.1| Putative RNA-binding protein [Xanthomonas campestris pv. campestris] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 I +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTRRLSD 727 >gi|30250132|ref|NP_842202.1| S1 RNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30139239|emb|CAD86109.1| S1 RNA binding domain [Nitrosomonas europaea ATCC 19718] Length = 801 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I SITD+ + I +G V V FGAF+ +DGLVH+S L+ + + +VK Sbjct: 664 QEGIESITDL-QPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSALANKFIKDPHQIVKP 722 Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691 G V V++L D R +I L+M++ D Sbjct: 723 GQVVKVRVLTVDAVRQRISLTMRIDD 748 >gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex] Length = 246 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365 ++ D+ +R+DGR +R I +G+ + GS+ +G+T+ + V G E Sbjct: 6 LLSDQGLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAV-YGPHE------- 57 Query: 366 LSGTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIH-----PVLPQTAQF 419 + G+ ++ + F+ C + MG RR G + + H +T + Sbjct: 58 IRGS-KSKALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELY 116 Query: 420 PYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469 P + + I E+ ++DG + A V + +AL+DAGVP+ V LVKD Sbjct: 117 PRSQIDIFVEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKD 167 >gi|304309783|ref|YP_003809381.1| predicted transcriptional accessory protein [gamma proteobacterium HdN1] gi|301795516|emb|CBL43714.1| predicted transcriptional accessory protein [gamma proteobacterium HdN1] Length = 787 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 8/82 (9%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V +FGAFV +DGLVHIS LS + V +VVK GD V VK+++ D R + Sbjct: 653 EGCVTNVTNFGAFVDIGVHQDGLVHISVLSDKFVKDPHEVVKAGDIVKVKVVEIDIPRKR 712 Query: 683 IKLSMK-------VVDQNTGKP 697 I LSM+ V N G P Sbjct: 713 IGLSMRMDEPVGQVTTGNKGAP 734 >gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] Length = 245 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366 M + +R DGR + +R + G GS L G+T+ V+ T E Sbjct: 3 MTEAFLRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTR--VMCTASAEEGVPRFKKD 60 Query: 367 SGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422 SG Y LP AT + S G R RL R++ + TA T Sbjct: 61 SG--EGWLTAEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENT 118 Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471 +++ ++ ++DG + A++ G+ +AL DA G P+ PVA +++G+V Sbjct: 119 IQLDCDVLQADGGTRTASITGAYVALADAIGYLKEQGVVPGEPLLAPVAAVSVGIV---- 174 Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499 D + D+ +ED +D V TDSG Sbjct: 175 DGRVCLDLPYEEDSRAEVDLNVVMTDSG 202 >gi|229153088|ref|ZP_04281268.1| RNA binding S1 domain protein [Bacillus cereus m1550] gi|228630354|gb|EEK87003.1| RNA binding S1 domain protein [Bacillus cereus m1550] Length = 119 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 18 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 78 SLSLKAAKRKQGRILI 93 >gi|42784085|ref|NP_981332.1| general stress protein 13 [Bacillus cereus ATCC 10987] gi|206976489|ref|ZP_03237396.1| general stress protein 13 [Bacillus cereus H3081.97] gi|217962367|ref|YP_002340939.1| general stress protein 13 [Bacillus cereus AH187] gi|222098354|ref|YP_002532412.1| general stress protein 13 [Bacillus cereus Q1] gi|42740016|gb|AAS43940.1| general stress protein 13 [Bacillus cereus ATCC 10987] gi|206745413|gb|EDZ56813.1| general stress protein 13 [Bacillus cereus H3081.97] gi|217068117|gb|ACJ82367.1| general stress protein 13 [Bacillus cereus AH187] gi|221242413|gb|ACM15123.1| general stress protein 13 [Bacillus cereus Q1] gi|324328780|gb|ADY24040.1| general stress protein 13 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 114 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683 G+V + D+GAFV GLVHIS+++ V D +K GDTV VK+L D+ K+ Sbjct: 13 GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72 Query: 684 KLSMKVVDQNTGKPIV 699 LS+K + G+ ++ Sbjct: 73 SLSLKAAKRKQGRILI 88 >gi|229159409|ref|ZP_04287429.1| Tex protein-related transcription accessory protein (S1 RNA binding domain) [Bacillus cereus R309803] gi|228624076|gb|EEK80882.1| Tex protein-related transcription accessory protein (S1 RNA binding domain) [Bacillus cereus R309803] Length = 722 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 +G V V+DFGAFV +DGLVHIS+LST+ V D+V G V V + D D +G+ Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSTQYVKHPLDIVSVGQIVKVWVDDIDTKKGR 713 Query: 683 IKLSM 687 + LSM Sbjct: 714 VALSM 718 >gi|119484685|ref|ZP_01619167.1| RNA binding S1 [Lyngbya sp. PCC 8106] gi|119457503|gb|EAW38627.1| RNA binding S1 [Lyngbya sp. PCC 8106] Length = 716 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E I+ I+D+ E ++ +G V V++FGAFV +DGLVHISQL+ + V + VK Sbjct: 634 KEGIKEISDLKEGMEL-EGIVTNVVNFGAFVDIGVHQDGLVHISQLADQFVDDPNQFVKV 692 Query: 667 GDTVWVKLLDFDDRGK-IKLSMKV 689 G V V++L+ ++ K I LSMK+ Sbjct: 693 GQVVKVRVLEVKEKLKRIGLSMKL 716 >gi|258592125|emb|CBE68430.1| 30S ribosomal subunit protein S1 [NC10 bacterium 'Dutch sediment'] Length = 577 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682 +G+V+ + D+GAFV +GLVHIS++S T+RV S VV GD++ V +LD D K Sbjct: 304 RGKVISLTDYGAFVELADGIEGLVHISEMSWTQRVKHPSKVVSVGDSIEVVVLDVDKVNK 363 Query: 683 -IKLSMKVVDQN 693 I L ++ ++ N Sbjct: 364 RISLGLRQIEPN 375 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 K +VV++ DFGAFV +GL+HIS+LS ERVAK DVV + +K++ D + K Sbjct: 479 KAKVVRLTDFGAFVELEDGVEGLLHISELSHERVAKPEDVVSIDQELSLKIIKLDANERK 538 Query: 683 IKLSMK 688 + LS++ Sbjct: 539 LGLSLR 544 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E KI +G+V + ++GAF+ G DGL+HI+ +S RV S++ GD + V +L F Sbjct: 213 EEGKIIRGKVKNITEYGAFIDLGGL-DGLLHITDMSWGRVGHPSELFTVGDEIEVVVLKF 271 Query: 678 D 678 D Sbjct: 272 D 272 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644 V +D D K S L +IE + SI + V +G V + DFGAFV D Sbjct: 354 VVLDVDKVNKRISLGLRQIEPNPWL--SIEESYPVGMRVEGTVRNLTDFGAFVELNDGID 411 Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688 GL+H+S +S T+RV S+V+K GD V +L D +I L +K Sbjct: 412 GLIHVSDMSWTKRVRHPSEVLKRGDKVEAVVLHTDKANRRISLGLK 457 >gi|299822367|ref|ZP_07054253.1| YhgF like protein [Listeria grayi DSM 20601] gi|299815896|gb|EFI83134.1| YhgF like protein [Listeria grayi DSM 20601] Length = 726 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS + + DVV GD TVWV+ +D ++ Sbjct: 654 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDVVSVGDIVTVWVEEVDL-NKN 712 Query: 682 KIKLS 686 +I L+ Sbjct: 713 RIALT 717 >gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946] Length = 598 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +GQVV+V +FG FV G DGLVH S+++ R +V+++G TV K+L D +R Sbjct: 258 VVEGQVVEVTEFGVFVALGGV-DGLVHRSEITWGRFTHPKEVIQKGQTVRAKVLSVDPER 316 Query: 681 GKIKLSMKVV 690 ++ LS+K + Sbjct: 317 ERVNLSIKAL 326 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 KG+V + DFG FV +GL+HIS+L RV K SD+ K+GD V +L+ D + Sbjct: 432 KGKVTGLTDFGVFVEIEPGIEGLIHISELDYSRVEKPSDLFKKGDEVEAVILNIDPVEQR 491 Query: 683 IKLSMK 688 I LS K Sbjct: 492 ISLSRK 497 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +G+VV + FGAFV +GL+HIS+LS T+R S+VVKEG V +L D Sbjct: 345 QGKVVGLTPFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGQEVEAVVLRID 400 >gi|113679482|ref|NP_001038817.1| exosome complex exonuclease RRP46 isoform 1 [Danio rerio] gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio] gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio] Length = 218 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 33/214 (15%) Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYVDSLSGTQRND 373 R +R+ ++ LL R GSS F++GDT +I+ G E ++ D Sbjct: 5 RSCPVLREYGSEQSLLSRPDGSSTFVQGDT-SILAGVYGPAEVKVSKEIYDR-------- 55 Query: 374 FMMHYNFLPCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430 AT EV +MG PS RE + R L T +L ++ ++ Sbjct: 56 ----------ATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVV 105 Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490 DGS + + +ALMDAG+P+S+ + + K+G I++D + ++ + Sbjct: 106 HDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQ---IITDPTARQEKVSRAL 162 Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524 A DS + M G S V LQQ Sbjct: 163 LTFA-IDSNERNVLMSSTTGSFS----VQELQQC 191 >gi|256371862|ref|YP_003109686.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 427 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658 SL+ R+ + ++ ++ G+V K++ FG FV +GLVHIS+++ V Sbjct: 289 SLSLKATQRDPWQEFASAHKIGELVYGRVTKIVPFGCFVQVAPGIEGLVHISEMALHHVD 348 Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688 VV G+ +WVK++D D R +I LS++ Sbjct: 349 LPEQVVSVGEELWVKIIDLDPGRRRISLSIR 379 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678 ++ KG V ++ FG FV G DGLVH+S+LS V S VV GD V V +L+ D Sbjct: 225 GEVRKGVVSSIVHFGVFVDL-GGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLVLEVDQ 283 Query: 679 DRGKIKLSMKVVDQN 693 + +I LS+K ++ Sbjct: 284 EHERISLSLKATQRD 298 >gi|210615657|ref|ZP_03290703.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787] gi|210150200|gb|EEA81209.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787] Length = 361 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V K G+V ++ DFGAFV D L+H+SQ+S V K SD + G + K++D + Sbjct: 276 VGKEVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDALSVGQEITAKVVDLN 335 Query: 679 D-RGKIKLSMKVV 690 + KI LSMK + Sbjct: 336 EAEKKISLSMKAL 348 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V + +G V V DFGAF+ G DGL+HIS++S RV V + GDTV V + D Sbjct: 192 KVGDVVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDTVKVLVKDI 250 Query: 678 DDRGKIKLSMKVVDQN 693 +D K+ LS+K + N Sbjct: 251 NDT-KVALSLKFPETN 265 >gi|311086046|gb|ADP66128.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 558 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 23/201 (11%) Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554 Q+D+ + I + +++ ++AKR ++ E + SE+ + + G FT + + Sbjct: 67 QIDVALDAIEDGFGETLLSREKAKRHEAWLILEKAHEKSETVIGIINGKVKGGFTVELND 126 Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 I A P +R+ I + GK + V + K N V ++ ++ E E + E Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 + + ++ E + KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD Sbjct: 182 RDQLLENLQEGMHV-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239 Query: 669 TVWVKLLDFD-DRGKIKLSMK 688 + +K+L FD +R ++ L +K Sbjct: 240 EINIKILKFDRERTRVSLGLK 260 >gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 251 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 22/254 (8%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R D R + +R I + GS L G T+ I T+ ++ L G+ + Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56 Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP +T VSR A + R + RL RA+ V+ A ++ I Sbjct: 57 GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478 ++ ++DG + A++ G+ +AL+DA PI+ A I++G+ DG ++D Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITNFCAAISVGIGPDGP----ITD 172 Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537 + +ED +D V T SG + +Q + G + + + L A+ ++ + + Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232 Query: 538 VLSESRLQLGEFTP 551 VL + ++G+ P Sbjct: 233 VLGATADKVGKEYP 246 >gi|224533971|ref|ZP_03674555.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a] gi|224512807|gb|EEF83174.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a] Length = 551 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTV 670 S+ D +++ I KG+VVK++ FGA + G +HIS S RV K+ +++K G V Sbjct: 264 SVDDKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIV 323 Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693 VK+L+ D + KI L +K +++N Sbjct: 324 EVKILEIDKENQKISLGIKQINEN 347 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 +E R++ + I V N+ + G V ++ ++GA V G++H ++ +V Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226 Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693 D V+ GD + +K++ + + GK++LS+K + N Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260 >gi|167628523|ref|YP_001679022.1| hypothetical protein HM1_0392 [Heliobacterium modesticaldum Ice1] gi|167591263|gb|ABZ83011.1| conserved domain protein [Heliobacterium modesticaldum Ice1] Length = 729 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V+DFGAFV DGLVH+SQL+ + V +VV GD V V +L D R Sbjct: 655 VLQGTVRNVVDFGAFVDIGIKHDGLVHVSQLADKFVRHPMEVVAVGDIVTVAVLSVDRQR 714 Query: 681 GKIKLSMKVVDQNT 694 ++ L+M+ V Q + Sbjct: 715 ERVGLTMRGVPQTS 728 >gi|323495049|ref|ZP_08100138.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546] gi|323310706|gb|EGA63881.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546] Length = 556 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|229917405|ref|YP_002886051.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] gi|229468834|gb|ACQ70606.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b] Length = 170 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 43/71 (60%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + FGAFV + GLVHIS+++ V ++V+ G V VK+L+ Sbjct: 4 EVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNV 63 Query: 678 DDRGKIKLSMK 688 ++ GKI LS+K Sbjct: 64 ENDGKIGLSIK 74 >gi|21227909|ref|NP_633831.1| translation initiation factor IF-2 subunit alpha [Methanosarcina mazei Go1] gi|20906328|gb|AAM31503.1| protein translation initiation factor 2 subunit alpha [Methanosarcina mazei Go1] Length = 271 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 609 MIRSITD-VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665 M+R D PEV + V V DFGA+V G R+G +HIS++ V D V+ Sbjct: 1 MVRMGNDNWPEVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVR 60 Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 EG + K+L+ D RG I LS+K V+++ Sbjct: 61 EGQKIVCKVLNVDPSRGHIDLSLKDVNEH 89 >gi|28898804|ref|NP_798409.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633] gi|28807023|dbj|BAC60293.1| ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633] gi|328474637|gb|EGF45442.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329] Length = 556 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1] gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1] Length = 245 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 25/203 (12%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R+DGR +R + + GS L GDT+ I T+ +E+ L G + Sbjct: 3 RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATV----EERVPPFLKGLGKG 58 Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y+ LP ATG E +R G R + RL RA+ V+ A +L + Sbjct: 59 WVTAEYSMLPRATGSRTIREAAR-GKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDC 117 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++ A +P+S +A ++G+VK G I Sbjct: 118 DVIQADGGTRTASITGAYVAMIFALNRLVEQGMLEKIPVSDFIAATSVGIVK-GRPVI-- 174 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+ ED + +D V T +G Sbjct: 175 -DLCYAEDSVAEVDMNVVMTGTG 196 >gi|325661147|ref|ZP_08149774.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085098|ref|ZP_08334184.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472654|gb|EGC75865.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407881|gb|EGG87371.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 360 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+V ++ DFGAFV D L+H+SQ+S V K SDV+ G + +++D ++ KI Sbjct: 282 GKVARMTDFGAFVELAPGVDALLHVSQISKAHVEKPSDVLSVGQEIVARVVDLNEAEKKI 341 Query: 684 KLSMKVV 690 LSMK + Sbjct: 342 SLSMKAL 348 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 +V +G V V DFGAF+ G DGL+HIS++S RV V + GD V V + D Sbjct: 192 KVGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDI 250 Query: 678 DDRGKIKLSMKVVDQN 693 +D KI LS+K + N Sbjct: 251 NDT-KIALSLKFPESN 265 >gi|260887148|ref|ZP_05898411.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena ATCC 35185] gi|260863210|gb|EEX77710.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena ATCC 35185] Length = 373 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +I +G V +++++GAF+ G DGL HIS L+ RV + SDV+ GD V V + +F Sbjct: 190 EVGQIIRGTVKRLVEYGAFIDIGGV-DGLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNF 248 Query: 678 DDRGK-IKLSMK 688 D K I LS+K Sbjct: 249 DPETKRISLSVK 260 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+++K+ DFGAF+ DGL+ + +L+ R+A+ + V+ GD V VK+L D R + Sbjct: 281 KGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQLGDIVKVKILHIDMKRKR 340 Query: 683 IKLSM 687 I LS+ Sbjct: 341 ISLSI 345 >gi|217965005|ref|YP_002350683.1| hypothetical protein LMHCC_1728 [Listeria monocytogenes HCC23] gi|217334275|gb|ACK40069.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|307570435|emb|CAR83614.1| toxin expression-transcriptional accessory protein [Listeria monocytogenes L99] Length = 725 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681 +G V V+DFGAFV +DGLVHIS+LS V DVV GD TVWV +D + Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDIVTVWVDEVD-TKKN 711 Query: 682 KIKLSM 687 +I L+M Sbjct: 712 RIALTM 717 >gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2] Length = 239 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R GR ++ +R I + GS L GDT+ I V+ + L G + Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58 Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428 Y LP +TGE ++ A ++ G RL R++ L + TL I + Sbjct: 59 WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118 Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477 + ++DG + A++ G+++AL+DA G P+ + VA +++G+ + + + Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174 Query: 478 DISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V TD+G Sbjct: 175 DLDYLEDSAAETDLNVVMTDAG 196 >gi|15616919|ref|NP_240132.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681673|ref|YP_002468059.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682228|ref|YP_002468612.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471362|ref|ZP_05635361.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387054|sp|P57395|RS1_BUCAI RecName: Full=30S ribosomal protein S1 gi|25294429|pir||B84966 30S ribosomal protein S1 [imported] - Buchnera sp. (strain APS) gi|10038983|dbj|BAB13018.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621961|gb|ACL30117.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624516|gb|ACL30671.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086619|gb|ADP66700.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087202|gb|ADP67282.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087727|gb|ADP67806.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 558 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 23/201 (11%) Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554 Q+D+ + I + +++ ++AKR ++ E + SE+ + + G FT + + Sbjct: 67 QIDVALDAIEDGFGETLLSREKAKRHEAWLILEKAHEKSETVIGIINGKVKGGFTVELND 126 Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 I A P +R+ I + GK + V + K N V ++ ++ E E + E Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 + + ++ E + KG V + D+GAFV G DGL+HI+ ++ +RV S++V GD Sbjct: 182 RDQLLENLQEGMHV-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239 Query: 669 TVWVKLLDFD-DRGKIKLSMK 688 + +K+L FD +R ++ L +K Sbjct: 240 EINIKILKFDRERTRVSLGLK 260 >gi|309389981|gb|ADO77861.1| Tex-like protein [Halanaerobium praevalens DSM 2228] Length = 723 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680 I+KG+V ++DFGAF+ +DGL+HIS++S V ++V+ G + V++L D R Sbjct: 655 IFKGKVRNIVDFGAFIDIGLKQDGLLHISEMSQMYVNDPFEIVEIGQNIDVQVLAVDQSR 714 Query: 681 GKIKLSMK 688 G+I L++K Sbjct: 715 GRISLTLK 722 >gi|197124120|ref|YP_002136071.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K] gi|196173969|gb|ACG74942.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K] Length = 537 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 ++ G V V D+GAFV G +GLVH+S+L+ +RV+K D++ GD V V++L D+ Sbjct: 328 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDP 386 Query: 682 K----IKLSMK 688 K I LS+K Sbjct: 387 KKGERIGLSVK 397 Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + + V KV FG FV F G R GLV S+ T R A K GDT+ + D Sbjct: 429 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGADLRRSFKVGDTLQALVSAID 487 Query: 679 DRGKIKLS 686 ++G+I+LS Sbjct: 488 EQGRIRLS 495 >gi|86750388|ref|YP_486884.1| RNA binding S1 [Rhodopseudomonas palustris HaA2] gi|86573416|gb|ABD07973.1| RNA binding S1 [Rhodopseudomonas palustris HaA2] Length = 799 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666 +E + ITD+ + I + V V FGAF +DGL+HIS +S R+ +VVK Sbjct: 663 QEGVEKITDL-KPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKP 721 Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691 G V VK+L+ D R +I L++++ D Sbjct: 722 GQVVKVKVLEVDVPRNRIGLTLRLSD 747 >gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] Length = 242 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 37/251 (14%) Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372 R DGR + +R IS Q + GS L GDT + ++ E+ L T + Sbjct: 5 RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVA----EEVPPFLQNTGQG 60 Query: 373 DFMMHYNFLPCATGE--------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424 Y LP AT + VS A +R IG A H + + T+ Sbjct: 61 WLTAEYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSR------TIT 114 Query: 425 IVSEITESDGSSSMATVCGSSLALMDA--------------GVPISKPVAGIAMGLVKDG 470 + +++ ++DGS+ A + G +AL DA G P+ + VA +++G+V+ G Sbjct: 115 VDADVLQADGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVR-G 173 Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529 + +L D+ +ED +D + + G + +Q + G + ++ L A+ G Sbjct: 174 E---VLVDLCYEEDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQ 230 Query: 530 HILNEMSKVLS 540 +L + L+ Sbjct: 231 ELLRAQRETLN 241 >gi|78222087|ref|YP_383834.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15] gi|78193342|gb|ABB31109.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15] Length = 586 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%) Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679 ++ +G V + D+GAFV G DGL+H++ +S R+ S+++K GD + VK+L +D + Sbjct: 218 QVREGVVKNITDYGAFVDIGGV-DGLLHVTDMSWGRLGHPSEILKPGDKLNVKVLKYDQE 276 Query: 680 RGKIKLSMKVV 690 +GKI L +K V Sbjct: 277 KGKISLGLKQV 287 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G+V V DFG F+ +GL+H+S+LS E+VA + GD + +L D+ KI Sbjct: 481 GKVTSVTDFGVFLEIEEGIEGLIHVSELSREKVASPKEFTNVGDELDAVVLSVDESEKKI 540 Query: 684 KLSMK 688 LS+K Sbjct: 541 ALSIK 545 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL--DFDDR 680 KG+VV + D+GAF+ +GLVH+S++S T R+ S+++ GD V +L D +R Sbjct: 306 KGKVVSLTDYGAFIALEDGVEGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGNR 365 Query: 681 GKIKLSMKVVDQN 693 +I L +K V N Sbjct: 366 -RISLGLKQVQVN 377 Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678 +GQ+ + DFG F+ DGLVH+S +S T+R+ +V +G TV +L+ D Sbjct: 393 EGQIKSITDFGVFIGIEEGIDGLVHVSDISWTKRIKHPGEVFTKGQTVQAVVLNID 448 >gi|330839082|ref|YP_004413662.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185] gi|329746846|gb|AEC00203.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185] Length = 378 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +I +G V +++++GAF+ G DGL HIS L+ RV + SDV+ GD V V + +F Sbjct: 195 EVGQIIRGTVKRLVEYGAFIDIGGV-DGLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNF 253 Query: 678 DDRGK-IKLSMK 688 D K I LS+K Sbjct: 254 DPETKRISLSVK 265 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 KG+++K+ DFGAF+ DGL+ + +L+ R+A+ + V+ GD V VK+L D R + Sbjct: 286 KGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQLGDIVKVKILHIDMKRKR 345 Query: 683 IKLSM 687 I LS+ Sbjct: 346 ISLSI 350 >gi|328947116|ref|YP_004364453.1| Tex-like protein [Treponema succinifaciens DSM 2489] gi|328447440|gb|AEB13156.1| Tex-like protein [Treponema succinifaciens DSM 2489] Length = 784 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683 G++ V+DFGAFV GL+HIS+LS V+ DV+K GD ++D D DR +I Sbjct: 656 GKIKNVVDFGAFVDIGLHETGLIHISELSDSFVSDPMDVIKVGDVKEFTIIDLDTDRKRI 715 Query: 684 KLSMK 688 LS+K Sbjct: 716 SLSLK 720 >gi|255528150|ref|ZP_05394977.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] gi|255508163|gb|EET84576.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7] Length = 725 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V DFGAFV +DGLVHISQLS + V DVV+ GD V V +++ D+ R +I Sbjct: 655 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVEVTVIEVDEKRKRI 714 Query: 684 KLSMKVV 690 L+++ V Sbjct: 715 ALTIEKV 721 >gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252] gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252] Length = 720 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680 + +G+V K+ +FG FV DGLVHIS LS T R+ S+VVKEG+ + V +L+ D+ Sbjct: 466 VLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEE 525 Query: 681 G-KIKLSMKVVDQN 693 +I L K V N Sbjct: 526 NRRISLGHKQVQTN 539 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680 + +G+VV + D+GAFV +GLVHIS++S T+ + S V G V VK+L+ D Sbjct: 379 VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 438 Query: 681 G-KIKLSMKVVDQN 693 G KI L MK ++ N Sbjct: 439 GRKISLGMKQLEPN 452 >gi|229495637|ref|ZP_04389366.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406] gi|229317407|gb|EEN83311.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406] Length = 583 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%) Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AE+E + R I E ++ +G V ++ FG FV G DGL+HI+ LS ERV+ Sbjct: 187 AELEQQK---RDIISKLEKGQVLEGTVKNILPFGVFVDLGGV-DGLIHITDLSWERVSHP 242 Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 S+VV+ + V +LDFD ++ +I L +K + N Sbjct: 243 SEVVELDQKINVVILDFDENKTRIALGLKQLTPN 276 Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679 + KG+V + D+GAFV +GL+H+S++S + + D +K G+ V +L D + Sbjct: 290 VLKGKVELITDYGAFVEIAPGIEGLIHVSEMSWAQHLRSAQDFLKVGEEVEAVILTLDRE 349 Query: 680 RGKIKLSMK 688 K+ L MK Sbjct: 350 ERKMSLGMK 358 Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681 ++ +V +FG FV DGL+H+S LS T++V S+V + G + V++L+ D Sbjct: 378 HQAKVRNFTNFGVFVEIEEGVDGLIHLSDLSWTKKVKHPSEVTEIGAMIEVEVLEIDKEN 437 Query: 682 -KIKLSMKVVDQN 693 ++ L K ++N Sbjct: 438 RRLSLGHKQTEEN 450 >gi|167950655|ref|ZP_02537729.1| RNA binding S1 domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 130 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690 +FGAFV +DGLVHISQL+ V +VVK GD V VK+++ D +R ++ LSM++ Sbjct: 23 NFGAFVDIGVHQDGLVHISQLADRFVKDPREVVKAGDLVKVKVMEVDLERKRVGLSMRLQ 82 Query: 691 DQNTGKP 697 ++ +P Sbjct: 83 ERAEREP 89 >gi|262393793|ref|YP_003285647.1| 30S ribosomal protein S1p [Vibrio sp. Ex25] gi|269966533|ref|ZP_06180616.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B] gi|262337387|gb|ACY51182.1| SSU ribosomal protein S1p [Vibrio sp. Ex25] gi|269828877|gb|EEZ83128.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B] Length = 556 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44] gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44] Length = 245 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+DGR++ +R I L+ GS L GDT+ I T+ +E+ + G + Sbjct: 1 MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56 Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427 Y +P AT + S G + R + RL RA+ V+ A T+ I Sbjct: 57 GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+ +A++ A +P+ +A ++G+V+D ++ Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D++ ED +D V T G Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196 >gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753] gi|156866348|gb|EDO59720.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753] Length = 722 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683 G V V+DFGAFV +DGLVHISQ+ + + S+V+K GD V V +L+ D + +I Sbjct: 654 GTVRNVIDFGAFVDIGVHQDGLVHISQICNKYIKHPSEVLKVGDIVKVWVLNADPVKKRI 713 Query: 684 KLSMK 688 L+MK Sbjct: 714 GLTMK 718 >gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01] gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01] Length = 238 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R + R ++ VR I GS L G+T+ + T+ +E L G + Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP AT +R A + ++ G RL R++ V+ A + + + Sbjct: 57 GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476 ++ ++DG + A++ G+S+A+ DA P+ VA +++GL+ GDD +L Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 172 Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499 D+ ED D V T+ G Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195 >gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2] Length = 778 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669 + I D+ E + +G V V FGAF+ +DGLVH+SQLS + V +VVK GD Sbjct: 647 VEDIRDLKE-GMLLEGTVSNVAAFGAFIDIGVHQDGLVHVSQLSNKFVTDAREVVKTGDI 705 Query: 670 VWVKLLDFD-DRGKIKLSMKV 689 V V++ + D R +I L+MK+ Sbjct: 706 VKVRVTEVDVARKRIGLTMKL 726 >gi|325926365|ref|ZP_08187694.1| transcriptional accessory protein [Xanthomonas perforans 91-118] gi|325543244|gb|EGD14678.1| transcriptional accessory protein [Xanthomonas perforans 91-118] Length = 787 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHIS LS V DVVK GD V VK+L+ D R Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716 Query: 681 GKIKLSMKVVD 691 +I L+ ++ D Sbjct: 717 KRIALTCRLSD 727 >gi|218710037|ref|YP_002417658.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32] gi|218323056|emb|CAV19233.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32] Length = 556 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEILVKVLKFDRERTRVSLGLK 260 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 D D +R +I L +K N Sbjct: 334 DIDEERRRISLGLKQCKAN 352 >gi|220918900|ref|YP_002494204.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956754|gb|ACL67138.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 535 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 ++ G V V D+GAFV G +GLVH+S+L+ +RV+K D++ GD V V++L D+ Sbjct: 326 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDP 384 Query: 682 K----IKLSMK 688 K I LS+K Sbjct: 385 KKGERIGLSVK 395 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678 V + + V KV FG FV F G R GLV S+ T R + K GDT+ + D Sbjct: 427 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGSDLRRSFKVGDTLQALVSAID 485 Query: 679 DRGKIKLS 686 ++G+I+LS Sbjct: 486 EQGRIRLS 493 >gi|157690845|ref|YP_001485307.1| hypothetical protein BPUM_0047 [Bacillus pumilus SAFR-032] gi|194017967|ref|ZP_03056574.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061] gi|157679603|gb|ABV60747.1| S1 family RNA-binding protein [Bacillus pumilus SAFR-032] gi|194010304|gb|EDW19879.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061] Length = 132 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 EV +G+V + +FGAFV G GLVHIS+++ V ++ +K G+ V VK+++ Sbjct: 4 EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGEQVEVKVINV 63 Query: 678 DDRGKIKLSMK 688 + GKI LS+K Sbjct: 64 EKDGKIGLSIK 74 >gi|330684832|gb|EGG96525.1| Tex-like protein N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 716 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671 SI D+ E K+ G V V+DFGAFV +DGLVH+S+LS + V D+V GD V Sbjct: 636 SIEDLSEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 672 VKLLDFD-DRGKIKLSM 687 V +L+ D + K+ L+M Sbjct: 695 VWILNIDKQKDKVSLTM 711 >gi|312134574|ref|YP_004001912.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774625|gb|ADQ04112.1| RNA binding S1 domain protein [Caldicellulosiruptor owensensis OL] Length = 120 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681 I +G V ++ FGAFV + GLVHIS+++ E V +KE TV VK++D + G Sbjct: 8 ILEGIVKDIIQFGAFVELPNGKVGLVHISEVAEEYVEDIKKYLKENQTVKVKVIDVKEDG 67 Query: 682 KIKLSMK 688 KI LS+K Sbjct: 68 KISLSIK 74 >gi|269961758|ref|ZP_06176118.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3] gi|269833541|gb|EEZ87640.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3] Length = 556 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667 E++ ++ + EV KG V + D+GAFV G DGL+HI+ ++ +RV S++V G Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238 Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688 D + VK+L FD +R ++ L +K Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675 PE +K+ G+V + D+G FV +GLVH+S++ T + S VV GD V V +L Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333 Query: 676 DFD-DRGKIKLSMKVVDQN 693 + D +R +I L +K N Sbjct: 334 EIDEERRRISLGLKQCKAN 352 >gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428] gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428] Length = 566 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 + I + ++ + KG+V K+ FGAF+ G DGL+HISQ+S +RV K D +K G V Sbjct: 439 KEIENKYKIGDLVKGKVSKITTFGAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEV 498 Query: 671 WVKLLDFDD-RGKIKLSMKVVD 691 +++ D +I LS+K + Sbjct: 499 EARVIKVDKTERRIGLSLKAAN 520 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608 F P +I +PP ++ +G + K+N DD V ++ L E E A + Sbjct: 127 FLPGSQIDIVPPKDLQQFVG-------NTYDFKIVKIN-DDRKNVVLSRRELIEAERAEK 178 Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 R D +V KG V + DFGAF+ G DGL+HI+ ++ R+ S++VK G Sbjct: 179 RQR-FMDTIKVGSTVKGVVKNLTDFGAFIDLDGM-DGLLHITDMTWGRLGHPSELVKVGQ 236 Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693 + V +LD + ++ ++ L +K +N Sbjct: 237 ELDVIVLDINKEKERVSLGLKQTQKN 262 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676 ++ + KG V + +GAFV DG++H+S +S T++V S+V+K+GD + ++D Sbjct: 359 QIGRQVKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVID 418 Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698 D + +I L +K ++ + K I Sbjct: 419 IDKQNQRISLGIKQLEGDPWKEI 441 Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681 KG++ ++ +GAFV +GL+H+S+LS T+R+ + SDV+ G V +L + + Sbjct: 278 KGKITNLVPYGAFVEIEEGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQ 337 Query: 682 KIKLSMKVVDQN 693 KI L ++ ++ N Sbjct: 338 KISLGVRQLEPN 349 >gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 397 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677 E + G+V ++ FGAF+ GA DGL HIS+LS +RV +V++ G V V +L+ Sbjct: 208 EPGAVVTGRVNQLTPFGAFIDLGGA-DGLAHISELSWQRVNHPREVLQPGQEVQVYVLEV 266 Query: 678 D-DRGKIKLSMK 688 D DR +I LS++ Sbjct: 267 DRDRERIGLSLR 278 >gi|21242797|ref|NP_642379.1| transcription-related protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108280|gb|AAM36915.1| transcription-related protein [Xanthomonas axonopodis pv. citri str. 306] Length = 786 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA----------AREMIRS 612 I+ ++G G +RG+ A++ DD V L E+E A + Sbjct: 591 IKALLG-DGSFLRGL----KAEMFTDDQFGVPTVRDILKELEKPGRDPRPEFKAAQFAEG 645 Query: 613 ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670 I D+ + + +G V V FGAFV +DGLVHIS LS V DVVK GD V Sbjct: 646 IEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIV 705 Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691 VK+L+ D R +I L+ ++ D Sbjct: 706 KVKVLEVDVARKRIALTCRLSD 727 >gi|288960277|ref|YP_003450617.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510] gi|288912585|dbj|BAI74073.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510] Length = 784 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + +G V V FGAFV +DGLVHISQL+ V VVK GD V VK+L+ D R Sbjct: 650 MLEGVVTNVTAFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGDVVKVKVLEVDIPR 709 Query: 681 GKIKLSMKV 689 ++ L+M++ Sbjct: 710 KRVALTMRM 718 >gi|225025738|ref|ZP_03714930.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC 23834] gi|224941519|gb|EEG22728.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC 23834] Length = 583 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680 + KG V + D+GAFV G DGL+HI+ L+ RV S+V++ G V K+L FD DR Sbjct: 218 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDR 276 Query: 681 GKIKLSMK 688 ++ L MK Sbjct: 277 SRVSLGMK 284 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682 G+V + D+GAFV +GLVH+S++ T + S VV+ GD V V +LD D DR + Sbjct: 306 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILDIDEDRRR 365 Query: 683 IKLSMKVVDQN 693 I L MK N Sbjct: 366 ISLGMKQCQAN 376 >gi|78047770|ref|YP_363945.1| transcription-related protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036200|emb|CAJ23891.1| transcription-related protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 787 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/71 (46%),