RPSBLAST alignment for GI: 254780784 and conserved domain: TIGR01966

>gnl|CDD|131021 TIGR01966, RNasePH, ribonuclease PH. This bacterial enzyme, ribonuclease PH, performs the final 3'-trimming and modification of tRNA precursors. This model is restricted absolutely to bacteria. Related families outside the model include proteins described as probable exosome complex exonucleases (rRNA processing) and polyribonucleotide nucleotidyltransferases (mRNA degradation). The most divergent member within the family is RNase PH from Deinococcus radiodurans. Length = 236

 Score = 61.2 bits (149), Expect = 9e-10
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 35/208 (16%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +S     L+   GS L   G+T+ +   ++    +E+    L G+   
Sbjct: 1   RPDGRKPDQLRPVSITRDFLKHAEGSVLIEFGNTKVLCTASV----EEKVPPFLRGSGEG 56

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPYT 422
                Y  LP AT    R     RRE   G          RL  RA+  V+   A    T
Sbjct: 57  WITAEYGMLPRATQT--RN----RRESAKGKQSGRTQEIQRLIGRALRAVVDLEALGERT 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +AL DA             PI   VA +++G+V    
Sbjct: 111 IWIDCDVIQADGGTRTASITGAFVALADAISKLHKRGILKESPIRDFVAAVSVGIVDGE- 169

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+  +ED    +D  V  T SG
Sbjct: 170 ---PVLDLDYEEDSAADVDMNVVMTGSG 194