RPSBLAST alignment for GI: 254780784 and conserved domain: COG0689

>gnl|CDD|31033 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis]. Length = 230
 Score = 96.9 bits (241), Expect = 2e-20
 Identities = 68/239 (28%), Positives = 110/239 (46%), Gaps = 16/239 (6%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
             +  +R DGR  + +R I    G+L+   GSSL   G+T+ I  V+ G RE       L
Sbjct: 3   ESEDGMRPDGRKPDELRPIKITRGVLKHAEGSSLIEFGNTKVICTVS-GPREPVPR--FL 59

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            GT +      Y  LP +T E  +  A   R     RL  RA+  V+      P +   +
Sbjct: 60  RGTGKGWLTAEYGMLPRSTDERKKREADRGRTKEISRLIGRALRAVI-DLELLPESTIDI 118

Query: 427 S-EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ ++DG +  A++ G+SLAL DAG+P+   VA I++G+V       I+ D+  +ED 
Sbjct: 119 DCDVLQADGGTRTASITGASLALADAGIPLRDLVAAISVGIVDGV----IVLDLDYEEDS 174

Query: 486 LGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
               D  V  T +G    I  +  D   G  +E+ ++  L  A +G   +     + L+
Sbjct: 175 AAEADMNVVMTGNGGLVEIQGLAED---GPFTEDELLELLDLAIKGCNELRELQREALA 230