RPSBLAST alignment for GI: 254780784 and conserved domain: cd00164
>gnl|CDD|88416 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.. Length = 65
Score = 57.7 bits (139), Expect = 1e-08
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
G+VV + FG FV +GLVHIS+LS + V S+V K GD V VK+L+ D G
Sbjct: 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG 60
Query: 682 KIKLS 686
+I LS
Sbjct: 61 RISLS 65