RPSBLAST alignment for GI: 254780784 and conserved domain: cd05708

>gnl|CDD|88463 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.. Length = 77
 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +V +   G V +V D+G F+   G    GL H S++S  RVA  S + + GD V  K+L 
Sbjct: 1   KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLK 60

Query: 677 FD-DRGKIKLSMK 688
            D ++ +I L +K
Sbjct: 61  IDAEKKRISLGLK 73