BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] (699 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/699 (100%), Positives = 699/699 (100%) Query: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT Sbjct: 1 MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60 Query: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH Sbjct: 61 VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120 Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG Sbjct: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180 Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL Sbjct: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240 Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA Sbjct: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300 Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE Sbjct: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360 Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP Sbjct: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420 Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS Sbjct: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480 Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS Sbjct: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540 Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL Sbjct: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600 Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT Sbjct: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660 Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV Sbjct: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699 >gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 47.0 bits (110), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 +R+ GR +R+IS + + GS L GDT + TL +E+ + T+ Sbjct: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Y LP +TG + A S R+ G R+ RA+ V+ +A + I Sbjct: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Query: 428 EITESDGSSSMATVCGSSLALMDA 451 ++ ++DG + A + G+ +AL D Sbjct: 117 DVIQADGGTRTAAITGAWVALHDC 140 >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 44.7 bits (104), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653 I S A +E +R RS I E ++ +G V + D+G FV G DGL+H++ ++ Sbjct: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGV-DGLLHVTDIA 230 Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693 R+ S V+ G V VK++ + + +I L MK +++N Sbjct: 231 WHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKN 271 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682 G V + D+G FV +GL HISQ+S T++ S ++ G V V +L+ + R + Sbjct: 288 GVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKR 347 Query: 683 IKLSMK 688 I L +K Sbjct: 348 ISLGLK 353 Score = 32.0 bits (71), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDR 680 +G+V DFG F+ DG++H+S L R + V+ E GD V +LD D Sbjct: 374 EGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEK--VIAEYAKGDIVKAVVLDI-DV 430 Query: 681 GKIKLSMKV 689 GK ++S+ V Sbjct: 431 GKERISLGV 439 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE--FTPR 552 S I Q D K I + L+Q R HILN +K++S ++ + + FT R Sbjct: 286 SHILNFQKDFKDANI------IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQR 336 >gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 24.6 bits (52), Expect = 5.1, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 K ++ + + + +KL DFD G IKLS Sbjct: 378 KINNSIISNEKLQIKLQDFDSTGNIKLSF 406 >gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62] Length = 152 Score = 24.3 bits (51), Expect = 6.5, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 229 PIVIDSKDFSKLEEEMSQMIK 249 P+VID+ DF KL ++ +IK Sbjct: 125 PLVIDTIDFLKLFQQEKSLIK 145 >gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 500 Score = 24.3 bits (51), Expect = 6.9, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 56 FFPLTVNYQERTYAVGKIPGGYLRRESR---PTENE 88 F L + Y+ R GG++R+E+R P++NE Sbjct: 245 FLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNE 280 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,164 Number of Sequences: 1233 Number of extensions: 16662 Number of successful extensions: 66 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 12 length of query: 699 length of database: 328,796 effective HSP length: 80 effective length of query: 619 effective length of database: 230,156 effective search space: 142466564 effective search space used: 142466564 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)