BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780784|ref|YP_003065197.1| polynucleotide
phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str.
psy62]
         (699 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/699 (100%), Positives = 699/699 (100%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT
Sbjct: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH
Sbjct: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG
Sbjct: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL
Sbjct: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA
Sbjct: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE
Sbjct: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP
Sbjct: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS
Sbjct: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS
Sbjct: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL
Sbjct: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT
Sbjct: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV
Sbjct: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score = 47.0 bits (110), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR    +R+IS    + +   GS L   GDT  +   TL    +E+    +  T+ 
Sbjct: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +  A S R+ G      R+  RA+  V+  +A     + I  
Sbjct: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G+ +AL D 
Sbjct: 117 DVIQADGGTRTAAITGAWVALHDC 140


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 44.7 bits (104), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E +R   RS I    E  ++ +G V  + D+G FV   G  DGL+H++ ++
Sbjct: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGV-DGLLHVTDIA 230

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             R+   S V+  G  V VK++  + +  +I L MK +++N
Sbjct: 231 WHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKN 271



 Score = 35.0 bits (79), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G V  + D+G FV      +GL HISQ+S T++    S ++  G  V V +L+ +  R +
Sbjct: 288 GVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKR 347

Query: 683 IKLSMK 688
           I L +K
Sbjct: 348 ISLGLK 353



 Score = 32.0 bits (71), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDR 680
           +G+V    DFG F+      DG++H+S L   R  +   V+ E   GD V   +LD  D 
Sbjct: 374 EGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEK--VIAEYAKGDIVKAVVLDI-DV 430

Query: 681 GKIKLSMKV 689
           GK ++S+ V
Sbjct: 431 GKERISLGV 439


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score = 26.2 bits (56), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE--FTPR 552
           S I   Q D K   I      + L+Q  R   HILN  +K++S ++ +  +  FT R
Sbjct: 286 SHILNFQKDFKDANI------IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQR 336


>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 24.6 bits (52), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           K ++ +   + + +KL DFD  G IKLS 
Sbjct: 378 KINNSIISNEKLQIKLQDFDSTGNIKLSF 406


>gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 152

 Score = 24.3 bits (51), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 229 PIVIDSKDFSKLEEEMSQMIK 249
           P+VID+ DF KL ++   +IK
Sbjct: 125 PLVIDTIDFLKLFQQEKSLIK 145


>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 500

 Score = 24.3 bits (51), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESR---PTENE 88
           F  L + Y+ R        GG++R+E+R   P++NE
Sbjct: 245 FLGLAIEYEARRQIAILEDGGHIRQETRLFDPSKNE 280


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,164
Number of Sequences: 1233
Number of extensions: 16662
Number of successful extensions: 66
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 12
length of query: 699
length of database: 328,796
effective HSP length: 80
effective length of query: 619
effective length of database: 230,156
effective search space: 142466564
effective search space used: 142466564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)