HHSEARCH alignment of GI: 254780785 and SCOP domain: d1kuqa_

Alignment

Probab=100.00  E-value=1.2e-35  Score=215.45  Aligned_cols=83  Identities=48%  Similarity=0.735  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             89999999995458887888999999977999999999997784135277899999978999999984099999999998
Q gi|254780785|r    5 LERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQS   84 (89)
Q Consensus         5 ~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~   84 (89)
                      +++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++|++
T Consensus         2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~   81 (84)
T d1kuqa_           2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK   81 (84)
T ss_dssp             TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             17999999997689999898899999889999999999987765410399999999999999999986699999999988


Q ss_pred             HCC
Q ss_conf             368
Q gi|254780785|r   85 LKL   87 (89)
Q Consensus        85 Lgl   87 (89)
                      |||
T Consensus        82 LgL   84 (84)
T d1kuqa_          82 LGI   84 (84)
T ss_dssp             TCC
T ss_pred             CCC
T ss_conf             388

SCOP domain information

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]