RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15
[Candidatus Liberibacter asiaticus str. psy62]
         (89 letters)



>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
          [TaxId: 562]}
          Length = 88

 Score =  102 bits (255), Expect = 1e-23
 Identities = 42/88 (47%), Positives = 58/88 (65%)

Query: 2  SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61
          S++ E   +++ E+     DTGS EVQVA+ T +I +L  HF   KKD +S+ GL R++S
Sbjct: 1  SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60

Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89
           R  LL YL+RKDV RY RL++ L LRR
Sbjct: 61 QRRKLLDYLKRKDVARYTRLIERLGLRR 88


>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 85

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 3  ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISL 62
          +T ERKRE+++++ V   DTGSPEVQ+A+ TE+I NL EH +  KKD +S+ GL +++  
Sbjct: 1  LTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGK 60

Query: 63 RSSLLKYLERKDVERYKRLVQSLKL 87
          R  LL YL  KDV RY+ +V+ L L
Sbjct: 61 RRRLLAYLRNKDVARYREIVEKLGL 85


>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
          [TaxId: 274]}
          Length = 84

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 6  ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSS 65
          E K+++++E+A  PGDTGS EVQVA+ T RI  L+EH K  KKD +S  GL  ++  R  
Sbjct: 3  EEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRR 62

Query: 66 LLKYLERKDVERYKRLVQSLKL 87
          LL+YL+R+D ERY+ L++ L +
Sbjct: 63 LLRYLQREDPERYRALIEKLGI 84


>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase
           {Pseudomonas fragi [TaxId: 296]}
          Length = 260

 Score = 24.8 bits (53), Expect = 1.9
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 16  AVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRL 59
           A+ PG   +P V+  +      N  +   +A++ ++ K    + 
Sbjct: 182 AICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQF 225


>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 215

 Score = 24.0 bits (51), Expect = 4.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 71 ERKDVERYKRLVQSLK 86
          E++  E++ R V+ LK
Sbjct: 1  EKELYEKWMRTVEMLK 16


>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
          mellifera) [TaxId: 7460]}
          Length = 321

 Score = 23.3 bits (50), Expect = 6.7
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 36 IANLTEHFKSAKKDVNSKI 54
          + NLT+H +  +  + ++I
Sbjct: 72 LGNLTKHLQVFRDHLINQI 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.348 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 302,684
Number of extensions: 11517
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)