HHsearch alignment for GI: 254780786 and conserved domain: PRK13817
>PRK13817 ribosome-binding factor A; Provisional.
Probab=100.00 E-value=1.5e-33 Score=209.72 Aligned_cols=115 Identities=30% Similarity=0.417 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77389999999999999999514134201265168988889858756559999827986477899999985689999999
Q gi|254780786|r 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIG 87 (128)
Q Consensus 8 ~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~ 87 (128)
T Consensus 1 mS~R~~Rv~~~i~~eis~il~-~ei~dp~l~~--vtIt~V~vS~DL~~AkVy~s~l~~~~~~~~~~~L~~~~g~iR~~l~ 77 (119)
T PRK13817 1 MSQRQQRVADLIHQQLAELLK-KEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNEKEVQKALNKATGYLRHLLA 77 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCC--EEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 982779999999999999999-7577877786--3886999889987689999978996889999999996999999998
Q ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 987521457858999738688899999985576777764
Q gi|254780786|r 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126 (128)
Q Consensus 88 ~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~d~ 126 (128)
T Consensus 78 k~l-~lR~~P~L~F~~D~s~e~~~~I~~LL~~~~~~d~~ 115 (119)
T PRK13817 78 QAT-VLRYVPKLEFVYDESIERAHRISLLIERALKKDDS 115 (119)
T ss_pred HHC-CCEECCEEEEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 456-88579878999579778999999999999862113