HHsearch alignment for GI: 254780786 and conserved domain: pfam02033
>pfam02033 RBFA Ribosome-binding factor A.
Probab=99.96 E-value=3.3e-29 Score=185.24 Aligned_cols=103 Identities=36% Similarity=0.578 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999951413420126516898888985875655999982798-647789999998568999999998
Q gi|254780786|r 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDRVISALNCNIKFIRGRIGRS 89 (128)
Q Consensus 11 R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~-~~~~~~~~~L~~~~~~ir~~l~~~ 89 (128)
T Consensus 1 R~~rv~~~I~~~is~il~~-~i~d~~~~--~vtIt~V~~S~Dl~~AkVy~s~~~~~~~~~~~~~~L~~~~~~ir~~l~~~ 77 (104)
T pfam02033 1 RTERVAELIQRELAEILQR-ELKDPRLG--LVTVTEVEVSPDLSHAKVYVSVLGDEEEKEETLKALNKAAGFIRSELAKR 77 (104)
T ss_pred CCHHHHHHHHHHHHHHHHH-HCCCCCCC--EEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9389999999999999997-57586778--37998999657800189999965762049999999999899999998756
Q ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 7521457858999738688899999985
Q gi|254780786|r 90 LRNLRYVPELRFRYDTSLQSYWKLNALM 117 (128)
Q Consensus 90 l~~lr~~P~L~F~~D~s~e~~~~I~~LL 117 (128)
T Consensus 78 l~-lr~~P~L~F~~D~s~e~~~~I~~lL 104 (104)
T pfam02033 78 LR-LRYTPELRFVYDDSIEYGARIEELL 104 (104)
T ss_pred CC-CCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 47-6607727998269777899999739