HHsearch alignment of GI: 254780786 and MMDB domain: 1jos_A_

>1jos_A (A:) RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae}
Probab=99.97  E-value=4.9e-31  Score=195.22  Aligned_cols=118  Identities=25%  Similarity=0.446  Sum_probs=106.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf             8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r    5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF   81 (128)
Q Consensus         5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~   81 (128)
                      |+++|.|+.|++++|+++||++|.+ ++.||++.  +||||+|++|+|+++|+||||++|+.++   +.++++|++++|+
T Consensus         1 M~~~s~R~~rv~~~i~~~is~il~~-ei~d~~~~--~vtIt~V~vs~Dl~~akVy~s~~~~~~~~~~~~~~~~L~~~~g~   77 (128)
T 1jos_A            1 MAREFKRSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPY   77 (128)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9898717899999999999999997-56576668--15897999768855179999956871056799999999998999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf             999999987521457858999738688899999985576777764
Q gi|254780786|r   82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL  126 (128)
Q Consensus        82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~d~  126 (128)
                      ||+.||+++ .||++|+|+|++|++++++.+|++||++.+.+...
T Consensus        78 iR~~l~~~l-~lr~~P~L~F~~D~~~~~~~~i~~ll~~~~~~~~~  121 (128)
T 1jos_A           78 IRSLLGKAM-RLRIVPEIRFIYDQSLVEGMRMSNLVTNVVREDEK  121 (128)
T ss_dssp             HHHHHHHHH-CCSSCCEEEEEECCCCCCCC---------------
T ss_pred             HHHHHHHHC-CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999667-88079878999789778999999999998887663