HHsearch alignment of GI: 254780786 and MMDB domain: 1jos_A_
>1jos_A (A:) RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae}
Probab=99.97 E-value=4.9e-31 Score=195.22 Aligned_cols=118 Identities=25% Similarity=0.446 Sum_probs=106.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf 8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF 81 (128)
Q Consensus 5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~ 81 (128)
|+++|.|+.|++++|+++||++|.+ ++.||++. +||||+|++|+|+++|+||||++|+.++ +.++++|++++|+
T Consensus 1 M~~~s~R~~rv~~~i~~~is~il~~-ei~d~~~~--~vtIt~V~vs~Dl~~akVy~s~~~~~~~~~~~~~~~~L~~~~g~ 77 (128)
T 1jos_A 1 MAREFKRSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPY 77 (128)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9898717899999999999999997-56576668--15897999768855179999956871056799999999998999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999999987521457858999738688899999985576777764
Q gi|254780786|r 82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126 (128)
Q Consensus 82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~d~ 126 (128)
||+.||+++ .||++|+|+|++|++++++.+|++||++.+.+...
T Consensus 78 iR~~l~~~l-~lr~~P~L~F~~D~~~~~~~~i~~ll~~~~~~~~~ 121 (128)
T 1jos_A 78 IRSLLGKAM-RLRIVPEIRFIYDQSLVEGMRMSNLVTNVVREDEK 121 (128)
T ss_dssp HHHHHHHHH-CCSSCCEEEEEECCCCCCCC---------------
T ss_pred HHHHHHHHC-CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999667-88079878999789778999999999998887663