HHsearch alignment of GI: 254780786 and MMDB domain: 2dyj_A_

>2dyj_A (A:) Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain, structural genomics, NPPSFA; 1.84A {Thermus thermophilus HB8}
Probab=99.92  E-value=5.3e-25  Score=161.13  Aligned_cols=94  Identities=18%  Similarity=0.246  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             73899999999999999995141342012651689888898587565599998279864778999999856899999999
Q gi|254780786|r    9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR   88 (128)
Q Consensus         9 s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~~   88 (128)
                      |.|+.|++++|+++|+++|.  +++||++.  +||||+|++|+|+++|+|||++++  ++++++++|++++|+||+.||+
T Consensus         2 s~r~~r~~~~i~~~is~il~--~~~d~~~~--~vtIt~V~lS~D~~~a~Vy~s~~~--~~~~~~~~L~~~~~~iR~~l~~   75 (95)
T 2dyj_A            2 AYGKAHLEAQLKRALAEEIQ--ALEDPRLF--LLTVEAVRLSKDGSVLSVYVEAFR--EEEGALRALSRAERRLVAALAR   75 (95)
T ss_dssp             --CHHHHHHHHHHHHHHHHH--TCCCGGGT--TCEEEEEEECTTSSEEEEEEECSS--CHHHHHHHHHHTHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH--HHCCCCCC--CEEEEEEEECCCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             74589999999999999999--80686669--469979998899775999999744--4179999999989999999986


Q ss_pred             HHHHCCCCCEEEEEECCCHHH
Q ss_conf             875214578589997386888
Q gi|254780786|r   89 SLRNLRYVPELRFRYDTSLQS  109 (128)
Q Consensus        89 ~l~~lr~~P~L~F~~D~s~e~  109 (128)
                      ++ .||++|+|+|++|+++|.
T Consensus        76 ~l-~lr~~P~L~F~~D~~~e~   95 (95)
T 2dyj_A           76 RV-RMRRLPRLEFLPWRASPA   95 (95)
T ss_dssp             TS-CCSSCCEEEEEEGGGCC-
T ss_pred             HC-CCCCCCEEEEEECCCCCC
T ss_conf             67-980798689985599889