HHsearch alignment of GI: 254780786 and MMDB domain: 2dyj_A_
>2dyj_A (A:) Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain, structural genomics, NPPSFA; 1.84A {Thermus thermophilus HB8}
Probab=99.92 E-value=5.3e-25 Score=161.13 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73899999999999999995141342012651689888898587565599998279864778999999856899999999
Q gi|254780786|r 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR 88 (128)
Q Consensus 9 s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~~ 88 (128)
|.|+.|++++|+++|+++|. +++||++. +||||+|++|+|+++|+|||++++ ++++++++|++++|+||+.||+
T Consensus 2 s~r~~r~~~~i~~~is~il~--~~~d~~~~--~vtIt~V~lS~D~~~a~Vy~s~~~--~~~~~~~~L~~~~~~iR~~l~~ 75 (95)
T 2dyj_A 2 AYGKAHLEAQLKRALAEEIQ--ALEDPRLF--LLTVEAVRLSKDGSVLSVYVEAFR--EEEGALRALSRAERRLVAALAR 75 (95)
T ss_dssp --CHHHHHHHHHHHHHHHHH--TCCCGGGT--TCEEEEEEECTTSSEEEEEEECSS--CHHHHHHHHHHTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH--HHCCCCCC--CEEEEEEEECCCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 74589999999999999999--80686669--469979998899775999999744--4179999999989999999986
Q ss_pred HHHHCCCCCEEEEEECCCHHH
Q ss_conf 875214578589997386888
Q gi|254780786|r 89 SLRNLRYVPELRFRYDTSLQS 109 (128)
Q Consensus 89 ~l~~lr~~P~L~F~~D~s~e~ 109 (128)
++ .||++|+|+|++|+++|.
T Consensus 76 ~l-~lr~~P~L~F~~D~~~e~ 95 (95)
T 2dyj_A 76 RV-RMRRLPRLEFLPWRASPA 95 (95)
T ss_dssp TS-CCSSCCEEEEEEGGGCC-
T ss_pred HC-CCCCCCEEEEEECCCCCC
T ss_conf 67-980798689985599889