HHsearch results for GI: 254780786 and protein with PDBid: 2dyj_A
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain, structural genomics, NPPSFA; 1.84A {Thermus thermophilus HB8} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=99.92 E-value=3.4e-25 Score=161.35 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73899999999999999995141342012651689888898587565599998279864778999999856899999999
Q gi|254780786|r 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR 88 (128)
Q Consensus 9 s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~~ 88 (128)
|.|..|++++|+++||++|. ++.||+++ +||||+|++|+|+++|+||||++++ .++++++||+++|+||+.+++
T Consensus 2 s~r~~rl~~~i~r~is~~l~--~~~d~~~~--~vtIt~V~~S~Dl~~akVy~s~~~~--~~~~~~~L~~~~~~ir~~l~~ 75 (95)
T 2dyj_A 2 AYGKAHLEAQLKRALAEEIQ--ALEDPRLF--LLTVEAVRLSKDGSVLSVYVEAFRE--EEGALRALSRAERRLVAALAR 75 (95)
T ss_dssp --CHHHHHHHHHHHHHHHHH--TCCCGGGT--TCEEEEEEECTTSSEEEEEEECSSC--HHHHHHHHHHTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH--HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 71689999999999999999--80686668--3799699989997658999997898--699999999989999999995
Q ss_pred HHHHCCCCCEEEEEECCCHH
Q ss_conf 87521457858999738688
Q gi|254780786|r 89 SLRNLRYVPELRFRYDTSLQ 108 (128)
Q Consensus 89 ~l~~lr~~P~L~F~~D~s~e 108 (128)
++ ++||+|+|+|++|++.+
T Consensus 76 ~l-~lr~~P~L~F~~D~s~~ 94 (95)
T 2dyj_A 76 RV-RMRRLPRLEFLPWRASP 94 (95)
T ss_dssp TS-CCSSCCEEEEEEGGGCC
T ss_pred HC-CCEECCEEEEEECCCCC
T ss_conf 57-88289838998548998