Query gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 128
No_of_seqs 102 out of 1288
Neff 6.6
Searched_HMMs 23785
Date Mon May 30 13:19:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780786.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jos_A RBFA, ribosome-binding 100.0 1E-31 4.3E-36 198.2 10.9 115 5-123 1-118 (128)
2 1pa4_A Probable ribosome-bindi 100.0 1.4E-31 5.7E-36 197.5 0.9 114 7-124 1-114 (116)
3 2kzf_A RBFA, ribosome-binding 100.0 7.3E-30 3.1E-34 187.7 7.9 103 6-111 2-105 (106)
4 2e7g_A Putative ribosome-bindi 100.0 4E-30 1.7E-34 189.2 0.8 115 6-122 9-124 (129)
5 2dyj_A Ribosome-binding factor 99.9 3.4E-25 1.4E-29 161.4 10.9 93 9-108 2-94 (95)
6 3foz_A TRNA delta(2)-isopenten 22.5 39 0.0016 14.3 5.0 52 66-120 262-314 (316)
7 1b4a_A Arginine repressor; hel 21.7 32 0.0014 14.7 1.6 95 8-121 3-114 (149)
8 3crm_A TRNA delta(2)-isopenten 17.7 49 0.0021 13.7 4.5 48 68-118 270-317 (323)
9 1aoy_A Arginine repressor; DNA 17.7 11 0.00047 17.3 -1.5 46 1-56 1-53 (78)
10 2dit_A HIV TAT specific factor 11.2 71 0.003 12.8 1.1 33 44-76 53-85 (112)
No 1
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=99.97 E-value=1e-31 Score=198.16 Aligned_cols=115 Identities=26% Similarity=0.472 Sum_probs=104.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf 8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF 81 (128)
Q Consensus 5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~ 81 (128)
|+++++|+.||+++||++||++|.+ ++.||+++ +||||+|++|+||++|+||||++|+.++ +.++++|++++|+
T Consensus 1 M~~~~~R~~Rv~~~i~~~is~~l~~-~i~d~~l~--~vtIt~V~~S~Dl~~AkVy~s~~~~~~~~~~~~~~~~L~~~~~~ 77 (128)
T 1jos_A 1 MAREFKRSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPY 77 (128)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9898707899999999999999998-56686668--34885999889866389999846871067799999999998999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHH
Q ss_conf 999999987521457858999738688899999985576777
Q gi|254780786|r 82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123 (128)
Q Consensus 82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~ 123 (128)
||+.||+++ +|||+|+|+|++|++++++.+|++||++..-+
T Consensus 78 ir~~l~~~l-~lr~~P~L~F~~D~s~e~~~~I~~lL~~i~~~ 118 (128)
T 1jos_A 78 IRSLLGKAM-RLRIVPEIRFIYDQSLVEGMRMSNLVTNVVRE 118 (128)
T ss_dssp HHHHHHHHH-CCSSCCEEEEEECCCCCCCC------------
T ss_pred HHHHHHHHC-CCEECCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999999667-88079878999789778999999999998887
No 2
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=99.96 E-value=1.4e-31 Score=197.47 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77738999999999999999951413420126516898888985875655999982798647789999998568999999
Q gi|254780786|r 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86 (128)
Q Consensus 7 ~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l 86 (128)
++|.|+.|++++|+++||++|++ ++.||++. +||||+|++|+||++|+||||++++.+.++++++|++++|+||++|
T Consensus 1 M~~~R~~rv~~~i~~~is~il~~-~~~d~~l~--~vtIt~V~vS~Dl~~AkVy~s~~~~~~~~~~~~~L~~~~~~ir~~l 77 (116)
T 1pa4_A 1 MASYKKERLENDIIRLINRTVIH-EIYNETVK--TGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVL 77 (116)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-CSSSSCHH--HHCCSCCEEETTTTEEEECCCCSSSSSHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98578999999999999999997-56486768--3588799989997668999984672037999999999899999999
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHH
Q ss_conf 99875214578589997386888999999855767777
Q gi|254780786|r 87 GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124 (128)
Q Consensus 87 ~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v~~ 124 (128)
|+++. +||+|+|+|++|++++++.+|++||++++-.+
T Consensus 78 ~~~l~-lr~~P~L~F~~D~s~e~~~~I~~ll~~~~~~~ 114 (116)
T 1pa4_A 78 AHNLY-LAKAVQIHFVKDKAIDNAMRIESIINSLKKSK 114 (116)
T ss_dssp HTTCC-CGGGCCCEECSSSTTSSCC-------------
T ss_pred HHHCC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 96768-84498789997897789999999999987458
No 3
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-2, protein struc initiative; NMR {Thermotoga maritima}
Probab=99.96 E-value=7.3e-30 Score=187.70 Aligned_cols=103 Identities=27% Similarity=0.384 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 77773899999999999999995141342012651689888898587565599998279864-77899999985689999
Q gi|254780786|r 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISALNCNIKFIRG 84 (128)
Q Consensus 6 ~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~-~~~~~~~L~~~~~~ir~ 84 (128)
..+|.|+.|++++|+++||++|. ++.||++.+++||||+|++|+||++|+||||++++.+ .++++++|++++|+||+
T Consensus 2 M~~~~R~~rv~~~i~~~is~il~--~i~dp~l~~~~VtIt~V~~S~Dl~~AkVy~s~~~~~~~~~~~~~~L~~~~~~ir~ 79 (106)
T 2kzf_A 2 MNPAYRKAMLESEIQKLLMEALQ--QLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRT 79 (106)
T ss_dssp CSCCTTTHHHHHHHHHHHHHHHH--TTCCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88168999999999999999999--8548444686489959998999862799999878811099999999998999999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 999987521457858999738688899
Q gi|254780786|r 85 RIGRSLRNLRYVPELRFRYDTSLQSYW 111 (128)
Q Consensus 85 ~l~~~l~~lr~~P~L~F~~D~s~e~~~ 111 (128)
.||++|. +||+|+|+|++|+++|++.
T Consensus 80 ~l~~~l~-lr~~P~L~F~~D~s~e~~~ 105 (106)
T 2kzf_A 80 FIAKNLR-LYVAPEIRFYEDKGIEASV 105 (106)
T ss_dssp HHHHHSC-SSSCCEEEEESSCCCTTCC
T ss_pred HHHHHCC-CEECCEEEEEECCCHHHHC
T ss_conf 9996679-8189888999469566543
No 4
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=99.95 E-value=4e-30 Score=189.17 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 77773899999999999999995141342012651689888898587565599998279864-77899999985689999
Q gi|254780786|r 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISALNCNIKFIRG 84 (128)
Q Consensus 6 ~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~-~~~~~~~L~~~~~~ir~ 84 (128)
+.+|.|+.|++++|+++|+++|.++++.++.+ +.+||||+|++|+||++|+|||+++++.+ .+.++++|++++++||+
T Consensus 9 k~~s~R~~rv~~li~k~iseil~~~~~~~~~~-~~~VtIt~V~vS~Dl~~AkVy~s~~~~~~~~~~i~~~L~~~~~~iR~ 87 (129)
T 2e7g_A 9 KEDHARLRALNGLLYKALTDLLCTPEVSQELY-DLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRH 87 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCTTTCHHHH-HHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 86567899999999999999998466676555-87279989998798278999999679702599999999983999999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHH
Q ss_conf 99998752145785899973868889999998557677
Q gi|254780786|r 85 RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122 (128)
Q Consensus 85 ~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~v 122 (128)
.|++++ .|||||+|+|++|++++++.+|++||+..+.
T Consensus 88 ~l~~~l-~lr~~P~L~F~~D~s~e~~~~I~~lL~~~d~ 124 (129)
T 2e7g_A 88 LLMSQQ-TLRNVPPIVFVQDKGNAALAELDQLLAVADS 124 (129)
T ss_dssp HHHTCT-TCSCCCCEEEEETTCCCCCCCCCCCSCCCCC
T ss_pred HHHHHH-CCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 999882-8751772799957878899999999984668
No 5
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain, structural genomics, NPPSFA; 1.84A {Thermus thermophilus HB8} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=99.92 E-value=3.4e-25 Score=161.35 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73899999999999999995141342012651689888898587565599998279864778999999856899999999
Q gi|254780786|r 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR 88 (128)
Q Consensus 9 s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~~~~~~ir~~l~~ 88 (128)
|.|..|++++|+++||++|. ++.||+++ +||||+|++|+|+++|+||||++++ .++++++||+++|+||+.+++
T Consensus 2 s~r~~rl~~~i~r~is~~l~--~~~d~~~~--~vtIt~V~~S~Dl~~akVy~s~~~~--~~~~~~~L~~~~~~ir~~l~~ 75 (95)
T 2dyj_A 2 AYGKAHLEAQLKRALAEEIQ--ALEDPRLF--LLTVEAVRLSKDGSVLSVYVEAFRE--EEGALRALSRAERRLVAALAR 75 (95)
T ss_dssp --CHHHHHHHHHHHHHHHHH--TCCCGGGT--TCEEEEEEECTTSSEEEEEEECSSC--HHHHHHHHHHTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH--HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 71689999999999999999--80686668--3799699989997658999997898--699999999989999999995
Q ss_pred HHHHCCCCCEEEEEECCCHH
Q ss_conf 87521457858999738688
Q gi|254780786|r 89 SLRNLRYVPELRFRYDTSLQ 108 (128)
Q Consensus 89 ~l~~lr~~P~L~F~~D~s~e 108 (128)
++ ++||+|+|+|++|++.+
T Consensus 76 ~l-~lr~~P~L~F~~D~s~~ 94 (95)
T 2dyj_A 76 RV-RMRRLPRLEFLPWRASP 94 (95)
T ss_dssp TS-CCSSCCEEEEEEGGGCC
T ss_pred HC-CCEECCEEEEEECCCCC
T ss_conf 57-88289838998548998
No 6
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=22.52 E-value=39 Score=14.27 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHHHHHCCH
Q ss_conf 64778999999856899999999875214578589997-38688899999985576
Q gi|254780786|r 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY-DTSLQSYWKLNALMCLP 120 (128)
Q Consensus 66 ~~~~~~~~~L~~~~~~ir~~l~~~l~~lr~~P~L~F~~-D~s~e~~~~I~~LL~~~ 120 (128)
.+.+++++.+.. .-|++.-++++|+|.-|.+++.- ++.-+..+.|.++|+.+
T Consensus 262 ~s~~eaie~i~~---~TrqyAKRQ~TWfR~~~~i~wid~~~~~~~~~~I~~~l~~i 314 (316)
T 3foz_A 262 ISYDEMVYRGVC---ATRQLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAI 314 (316)
T ss_dssp SCHHHHHHHHHH---HHHHHHHHHHHHHHSCSSCEEEETTCHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999---99999999889838999875878988689999999999974
No 7
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=21.65 E-value=32 Score=14.72 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCC---EEEE-------EEEECCCCCHHH
Q ss_conf 7738999999999-------9999999514134201265168988889858756---5599-------998279864778
Q gi|254780786|r 8 NSRRALRVGEEVR-------SALMWVILNNEFQDRLISRDVISISEVCMSVDLR---VATV-------YISLPLDVSPDR 70 (128)
Q Consensus 8 ~s~R~~rv~~~i~-------~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~---~AkV-------yvs~~~~~~~~~ 70 (128)
.+.|+..+-++|+ ++|.+.|... | +.+|..-+|+|++ ..|| ||..+.+ ....
T Consensus 3 K~~Rq~~I~~lI~~~~I~tQeeL~~~L~~~--------G--i~vTQATiSRDlkeL~~vKv~~~~G~~~y~~~~~-~~~~ 71 (149)
T 1b4a_A 3 KGQRHIKIREIIMSNDIETQDELVDRLREA--------G--FNVTQATVSRDIKEMQLVKVPMANGRYKYSLPSD-QRFN 71 (149)
T ss_dssp -CHHHHHHHHHHHHSCCCSHHHHHHHHHHT--------T--CCCCHHHHHHHHHHTTCEEEECSSSCEEEECTTC-SSSC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------C--CCCCHHHHHHHHHHHCCEEEECCCCCEEEEECCC-CCCC
T ss_conf 899999999999858978899999999986--------9--8540899888899839888776999689960555-5546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHH
Q ss_conf 999999856899999999875214578589997386888999999855767
Q gi|254780786|r 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121 (128)
Q Consensus 71 ~~~~L~~~~~~ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~~~~ 121 (128)
.. ..++..+...+.++.+...+.... ...-.|.-+..+++...
T Consensus 72 ~~-------~~l~~~~~~~v~~i~~~~~lvvik-T~pG~A~~va~~ID~~~ 114 (149)
T 1b4a_A 72 PL-------QKLKRALVDVFIKLDGTGNLLVLR-TLPGNAHAIGVLLDNLD 114 (149)
T ss_dssp HH-------HHHHHHHHHHEEEEEEETTEEEEE-ESTTCHHHHHHHHHHHT
T ss_pred HH-------HHHHHHHHHHEEEEECCCCEEEEE-ECCCCHHHHHHHHHHCC
T ss_conf 68-------999999997726884038789999-47995899999998479
No 8
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=17.73 E-value=49 Score=13.67 Aligned_cols=48 Identities=10% Similarity=-0.085 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC
Q ss_conf 778999999856899999999875214578589997386888999999855
Q gi|254780786|r 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118 (128)
Q Consensus 68 ~~~~~~~L~~~~~~ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~I~~LL~ 118 (128)
.+++++.+. ..-|++.-++++|+|.-|.+.+.--...+...++-++|+
T Consensus 270 ~~e~~e~i~---~~TrqyAKRQ~TWfR~~~~i~w~d~~~~~~~~~~l~~lk 317 (323)
T 3crm_A 270 YAEMTERGI---IATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLK 317 (323)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHTCSSCEEEETTCSCHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHH
T ss_conf 999999999---999999989999848999881347988157999999988
No 9
>1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli K12} SCOP: a.4.5.3
Probab=17.73 E-value=11 Score=17.33 Aligned_cols=46 Identities=9% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCCCCCCCCHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 9988877773899999999-------9999999951413420126516898888985875655
Q gi|254780786|r 1 MKNKNPKNSRRALRVGEEV-------RSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA 56 (128)
Q Consensus 1 mk~~~~~~s~R~~rv~~~i-------~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~A 56 (128)
|++..++. .|..-+.++| |.+|.+.|... ++.+||..-+|+||+--
T Consensus 1 M~~~~kq~-~~l~~I~~lI~~~~i~tQ~eL~~~L~~~---------G~~~vTQaTiSRDL~eL 53 (78)
T 1aoy_A 1 MRSSAKQE-ELVKAFKALLKEEKFSSQGEIVAALQEQ---------GFDNINQSKVSRMLTKF 53 (78)
T ss_dssp CCCCCCST-THHHHHHHHHHTCCCCSHHHHHHHHHHH---------TCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHC---------CCCEECHHHHHHHHHHH
T ss_conf 98278899-9999999999828856799999999982---------98665298899999980
No 10
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=11.21 E-value=71 Score=12.79 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEEEECCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 888898587565599998279864778999999
Q gi|254780786|r 44 ISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76 (128)
Q Consensus 44 It~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~L~ 76 (128)
|+.|.+..+-....+||.+....+...+++.||
T Consensus 53 V~~v~~~~~~~~G~~fV~F~~~e~A~~Ai~~ln 85 (112)
T 2dit_A 53 IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSEEEEETTCTTCEEEEECSCHHHHHHHHHHST
T ss_pred EEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 899770477887279999898999999999979
Done!