HHSEARCH alignment of GI: 254780786 and SCOP domain: d1josa_

Alignment
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=99.95  E-value=1.8e-27  Score=172.89  Aligned_cols=96  Identities=30%  Similarity=0.549  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999995141342012651689888898587565599998279864---77899999985689999999
Q gi|254780786|r   11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS---PDRVISALNCNIKFIRGRIG   87 (128)
Q Consensus        11 R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~---~~~~~~~L~~~~~~ir~~l~   87 (128)
                      |+.||+++|+++||++|.+ ++.||+++  +||||+|++|+|+++|+||||++++.+   .++++++||+++|+||+++|
T Consensus         1 R~~rv~~~i~~~is~il~~-~i~d~~l~--~vtIt~V~~S~Dl~~A~Vy~s~~~~~~~~~~~~~~~~L~~~~~~ir~~la   77 (100)
T d1josa_           1 RSDRVAQEIQKEIAVILQR-EVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLG   77 (100)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HCCCTTTC--CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH-HCCCCCCC--CEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9189999999999999997-56586668--05898999769834279999965761245599999999998999999999


Q ss_pred             HHHHHCCCCCEEEEEECCCHHHH
Q ss_conf             98752145785899973868889
Q gi|254780786|r   88 RSLRNLRYVPELRFRYDTSLQSY  110 (128)
Q Consensus        88 ~~l~~lr~~P~L~F~~D~s~e~~  110 (128)
                      +++ ++||+|+|+|++|+++|++
T Consensus        78 ~~l-~~r~~P~L~F~~D~s~e~g   99 (100)
T d1josa_          78 KAM-RLRIVPEIRFIYDQSLVEG   99 (100)
T ss_dssp             HHH-CCSSCCEEEEEECCCCCCC
T ss_pred             HHC-CCCCCCEEEEEECCCHHCC
T ss_conf             766-8816986899956862135


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Ribosome-binding factor A, RbfA
family: Ribosome-binding factor A, RbfA
domain: Ribosome-binding factor A, RbfA
species: Haemophilus influenzae [TaxId: 727]