HHSEARCH alignment of GI: 254780786 and SCOP domain: d1kkga_

Alignment
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=4.8e-30  Score=187.42  Aligned_cols=105  Identities=33%  Similarity=0.473  Sum_probs=94.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCH---HHHHHHHHHHHHH
Q ss_conf             8777738999999999999999951413420126516898888985875655999982798647---7899999985689
Q gi|254780786|r    5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKF   81 (128)
Q Consensus         5 ~~~~s~R~~rv~~~i~~~is~il~~~~~~d~~~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~---~~~~~~L~~~~~~   81 (128)
                      |++++.|+.||+++|+++||++|.+ ++.||++++ +||||+|++|+||++|+||||++++.++   ++++++||+++|+
T Consensus         1 M~~~~~R~~rv~~~i~r~is~il~~-~~~dp~l~~-~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~~~L~~~~~~   78 (108)
T d1kkga_           1 MAKEFGRPQRVAQEMQKEIALILQR-EIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGF   78 (108)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHHTTS-SSSSGGGTS-CCBCSCEEEETTTTEEEEEEBCSGGGCHHHHHHHHHHHHHTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCC-EEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9986727899999999999999997-563865577-06994899768813189999954772067799999999997899


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
Q ss_conf             9999999875214578589997386888999
Q gi|254780786|r   82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWK  112 (128)
Q Consensus        82 ir~~l~~~l~~lr~~P~L~F~~D~s~e~~~~  112 (128)
                      ||++||++| ++||||+|+|++|+++|++.+
T Consensus        79 ir~~l~~~l-~lr~~P~L~F~~D~s~e~a~R  108 (108)
T d1kkga_          79 IRSLLGKAM-RLRIVPELTFFYDNSLVEGMR  108 (108)
T ss_dssp             HHHHHHHHT-TCSCCCEEEEEECCTTSSSCC
T ss_pred             HHHHHHHHC-CCEECCEEEEEECCCHHHHCC
T ss_conf             999998447-980898889996595530057


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Ribosome-binding factor A, RbfA
family: Ribosome-binding factor A, RbfA
domain: Ribosome-binding factor A, RbfA
species: Escherichia coli [TaxId: 562]